Sun, 24 Apr 2011

New package SPECIES with initial version 1.0
Package: SPECIES
Type: Package
Title: Statistical package for species richness estimation
Version: 1.0
Date: 2010-01-24
Author: Ji-Ping Wang,
Maintainer: Ji-Ping Wang
Description: SPECIES is an R package for estimation of species richness or diversity.
License: GPL-2
Packaged: 2011-04-23 11:19:27 UTC; root
Repository: CRAN
Date/Publication: 2011-04-24 20:26:06

More information about SPECIES at CRAN
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Package openair updated to version 0.4-17 with previous version 0.4-15 dated 2011-04-12

Title: Tools for the analysis of air pollution data
Description: Tools to analyse, interpret and understand air pollution data. Data are typically hourly time series and both monitoring data and dispersion model output can be analysed. Many functions can also be applied to other data, including meteorological and traffic data.
Author: David Carslaw and Karl Ropkins
Maintainer: David Carslaw

Diff between openair versions 0.4-15 dated 2011-04-12 and 0.4-17 dated 2011-04-24

 DESCRIPTION        |   10 ++++----
 NAMESPACE          |    1 
 NEWS               |   17 ++++++++++++++
 R/MannKendall.R    |   11 +++++++--
 R/aqStats.R        |only
 R/cutData.R        |   63 +++++++++++++++++++++++++++++++++++++++--------------
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 R/polarFreq.R      |    7 +++--
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 R/smoothTrend.R    |   34 ++++++++++++++++++----------
 R/timePlot.R       |   14 +++++++++--
 R/utilities.R      |   18 +++++++--------
 R/zzz.R            |    2 -
 man/aqStats.Rd     |only
 man/rollingMean.Rd |    8 +++---
 16 files changed, 173 insertions(+), 72 deletions(-)

More information about openair at CRAN
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Package lassoshooting updated to version 0.1.4-1 with previous version 0.1.3-7 dated 2011-04-24

Title: L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
Description: L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting is fast. This implementation can choose which coefficients to penalize. It support coefficient-specific penalities and it can take X'X and X'y instead of X and y.
Author: Tobias Abenius
Maintainer: Tobias Abenius

Diff between lassoshooting versions 0.1.3-7 dated 2011-04-24 and 0.1.4-1 dated 2011-04-24

 DESCRIPTION          |    8 ++++----
 man/lassoshooting.Rd |    3 +++
 src/ccd_r.c          |   16 ++++++++++------
 3 files changed, 17 insertions(+), 10 deletions(-)

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Package ff updated to version 2.2-2 with previous version 2.2-1 dated 2010-10-05

Title: memory-efficient storage of large data on disk and fast access functions
Description: The ff package provides data structures that are stored on disk but behave (almost) as if they were in RAM by transparently mapping only a section (pagesize) in main memory - the effective virtual memory consumption per ff object. ff supports R's standard atomic data types 'double', 'logical', 'raw' and 'integer' and non-standard atomic types boolean (1 bit), quad (2 bit unsigned), nibble (4 bit unsigned), byte (1 byte signed with NAs), ubyte (1 byte unsigned), short (2 byte signed with NAs), ushort (2 byte unsigned), single (4 byte float with NAs). For example 'quad' allows efficient storage of genomic data as an 'A','T','G','C' factor. The unsigned types support 'circular' arithmetic. There is also support for close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date' and custom close-to-atomic types. ff not only has native C-support for vectors, matrices and arrays with flexible dimorder (major column-order, major row-order and generalizations for arrays). There is also a ffdf class not unlike data.frames and import/export filters for csv files. ff objects store raw data in binary flat files in native encoding, and complement this with metadata stored in R as physical and virtual attributes. ff objects have well-defined hybrid copying semantics, which gives rise to certain performance improvements through virtualization. ff objects can be stored and reopened across R sessions. ff files can be shared by multiple ff R objects (using different data en/de-coding schemes) in the same process or from multiple R processes to exploit parallelism. A wide choice of finalizer options allows to work with 'permanent' files as well as creating/removing 'temporary' ff files completely transparent to the user. On certain OS/Filesystem combinations, creating the ff files works without notable delay thanks to using sparse file allocation. Several access optimization techniques such as Hybrid Index Preprocessing and Virtualization are implemented to achieve good performance even with large datasets, for example virtual matrix transpose without touching a single byte on disk. Further, to reduce disk I/O, 'logicals' and non-standard data types get stored native and compact on binary flat files i.e. logicals take up exactly 2 bits to represent TRUE, FALSE and NA. Beyond basic access functions, the ff package also provides compatibility functions that facilitate writing code for ff and ram objects and support for batch processing on ff objects (e.g. as.ram, as.ff, ffapply). ff interfaces closely with functionality from package 'bit': chunked looping, fast bit operations and coercions between different objects that can store subscript information ('bit', 'bitwhich', ff 'boolean', ri range index, hi hybrid index). This allows to work interactively with selections of large datasets and quickly modify selection criteria. Further high-performance enhancements can be made available upon request.
Author: Daniel Adler , Christian Gl\xE4ser , Oleg Nenadic , Jens Oehlschl\xE4gel , Walter Zucchini
Maintainer: Jens Oehlschl\xE4gel

Diff between ff versions 2.2-1 dated 2010-10-05 and 2.2-2 dated 2011-04-24

 ANNOUNCEMENT-2.2.txt          |    4 
 DESCRIPTION                   |    8 
 NEWS                          |   23 +
 R/as.ff.R                     |   14 
 R/bigsample.R                 |    6 
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 R/ffapply.R                   |   36 +-
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 118 files changed, 5977 insertions(+), 5919 deletions(-)

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Package bit updated to version 1.1-7 with previous version 1.1-6 dated 2010-09-27

Title: A class for vectors of 1-bit booleans
Description: bitmapped vectors of booleans (no NAs), coercion from and to logicals, integers and integer subscripts; fast boolean operators and fast summary statistics. With 'bit' vectors you can store true binary booleans {FALSE,TRUE} at the expense of 1 bit only, on a 32 bit architecture this means factor 32 less RAM and ~ factor 32 more speed on boolean operations. Due to overhead of R calls, actual speed gain depends on the size of the vector: expect gains for vectors of size > 10000 elements. Even for one-time boolean operations it can pay-off to convert to bit, the pay-off is obvious, when such components are used more than once. Reading from and writing to bit is approximately as fast as accessing standard logicals - mostly due to R's time for memory allocation. The package allows to work with pre-allocated memory for return values by calling .Call() directly: when evaluating the speed of C-access with pre-allocated vector memory, coping from bit to logical requires only 70% of the time for copying from logical to logical; and copying from logical to bit comes at a performance penalty of 150%. the package now contains further classes for representing logical selections: 'bitwhich' for very skewed selections and 'ri' for selecting ranges of values for chunked processing. All three index classes can be used for subsetting 'ff' objects (ff-2.1-0 and higher).
Author: Jens Oehlschl\xE4gel
Maintainer: Jens Oehlschl\xE4gel

Diff between bit versions 1.1-6 dated 2010-09-27 and 1.1-7 dated 2011-04-24

 DESCRIPTION        |    8 
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 13 files changed, 328 insertions(+), 313 deletions(-)

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Package actuar updated to version 1.1-2 with previous version 1.1-1 dated 2010-07-24

Title: Actuarial functions
Description: Additional actuarial science functionality, mostly in the fields of loss distributions, risk theory (including ruin theory), simulation of compound hierarchical models and credibility theory. The package also features 17 new probability laws commonly used in insurance, most notably heavy tailed distributions.
Author: Vincent Goulet, Sébastien Auclair, Christophe Dutang, Xavier Milhaud, Tommy Ouellet, Louis-Philippe Pouliot, Mathieu Pigeon
Maintainer: Vincent Goulet

Diff between actuar versions 1.1-1 dated 2010-07-24 and 1.1-2 dated 2011-04-24

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Package RInside updated to version 0.2.4 with previous version 0.2.3 dated 2010-08-06

Title: C++ classes to embed R in C++ applications
Description: C++ classes to embed R in C++ applications The RInside packages makes it easier to have 'R inside' your C++ application by providing a few wrapper classes. As R itself is embedded into your application, a shared library build of R is required. This works on Linux, OS X and even on Windows provided you use the same tools used to build R itself. (NB: Windows versions curretly seg.fault and debugging help would be appreciated. An older version worked fine, but there may have been some Rcpp changes which caused this.) Numerous examples are provided in the three subdirectories the examples/ directory of the installed package: standard, mpi (for parallel computing) and qt (showing how to embed RInside inside a Qt application). Doxygen-generated documentation of the C++ classes is available at the RInside website as well.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel and Romain Francois

Diff between RInside versions 0.2.3 dated 2010-08-06 and 0.2.4 dated 2011-04-24

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Package prodlim updated to version 1.2.1 with previous version 1.1.3 dated 2010-01-12

Title: Product Limit Estimation
Description: Fast and user friendly nonparametric estimation in censored survival (event history) analysis.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds

Diff between prodlim versions 1.1.3 dated 2010-01-12 and 1.2.1 dated 2011-04-24

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 80 files changed, 1500 insertions(+), 1797 deletions(-)

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Package WGCNA updated to version 1.10-2 with previous version 1.00 dated 2011-02-15

Title: Weighted Gene Co-Expression Network Analysis
Description: Functions necessary to perform Weighted Gene Co-Expression Network Analysis
Author: Peter Langfelder and Steve Horvath with contributions by Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang
Maintainer: Peter Langfelder

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Package SQLiteMap updated to version 0.6.1 with previous version 0.5 dated 2011-04-05

Title: Wrapper to spatialite functions
Description: Provides bindings to spatialite functionalities. Through this bindings (due to OGC specifications) numerous spatial functions can be performed by simple SQL statements.
Author: Norbert Solymosi
Maintainer: Norbert Solymosi

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Package languageR updated to version 1.2 with previous version 1.1 dated 2011-04-15

Title: Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics".
Description: Data sets exemplifying statistical methods, and some facilitatory utility functions used in "Analyzing Linguistic Data: A practical introduction to statistics using R", Cambridge University Press, 2008.
Author: R. H. Baayen
Maintainer:

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Package laeken updated to version 0.2.2 with previous version 0.2.1 dated 2011-03-09

Title: Estimation of indicators on social exclusion and poverty
Description: Estimation of indicators on social exclusion and poverty, as well as Pareto tail modeling for empirical income distributions (including graphical tools).
Author: Andreas Alfons, Josef Holzer and Matthias Templ
Maintainer: Andreas Alfons

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Package FRBData updated to version 0.2 with previous version 0.1 dated 2011-04-23

Title: Download financial data from FRB's website
Description: This package provides functions which can get financial and economical data from FRB's website.(http://www.federalreserve.gov)
Author: Shinichi Takayanagi
Maintainer: Shinichi Takayanagi

Diff between FRBData versions 0.1 dated 2011-04-23 and 0.2 dated 2011-04-24

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New package NBPSeq with initial version 0.1.4
Package: NBPSeq
Type: Package
Version: 0.1.4
Date: 04-23-2011
Title: The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq
Author: Yanming Di , Daniel W Schafer , with contributions from Jason S Cumbie and Jeff H Chang .
Maintainer: Yanming Di
Description: Fit NBP model to RNA-Seq count data and identify genes differentially expressing in two groups.
Depends: qvalue
License: GPL-2
LazyLoad: yes
Packaged: 2011-04-24 04:39:29 UTC; yanming
Repository: CRAN
Date/Publication: 2011-04-24 08:12:30

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Package BARD updated to version 1.21 with previous version 1.20 dated 2011-04-23

Title: Better Automated ReDistricting
Description: This is a package for automated redistricting and heuristic exploration of redistricter revealed preference
Author: Micah Altman
Maintainer: Micah Altman

Diff between BARD versions 1.20 dated 2011-04-23 and 1.21 dated 2011-04-24

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Package x12 updated to version 0.1-0 with previous version 0.0-7 dated 2010-07-24

Title: X12 - wrapper function and GUI
Description: A wrapper function and GUI for the X12 binaries under windows
Author: Alexander Kowarik
Maintainer: Alexander Kowarik

Diff between x12 versions 0.0-7 dated 2010-07-24 and 0.1-0 dated 2011-04-24

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Package visualizationTools updated to version 0.2 with previous version 0.1 dated 2011-02-28

Title: Package contains a few functions to visualize statistical circumstances.
Description: Package contains function to visualize a t-test, the power of a t-test, control charts and the influence of regulating them, Oc-curves, the Law of large Numbers and confidence intervals.
Author: Thomas Roth Etienne Stockhausen
Maintainer: T. Roth E. Stockhausen

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Package unknownR updated to version 0.2 with previous version 0.1 dated 2011-03-24

Title: You didn't know you didn't know?
Description: Utility to quickly find useful functions in R that you didn't know you didn't know.
Author: Matthew Dowle
Maintainer: Matthew Dowle

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Package twitteR updated to version 0.99.6 with previous version 0.99.4 dated 2011-04-14

Title: R based Twitter client
Description: Provides an interface to the Twitter web API
Author: Jeff Gentry
Maintainer: Jeff Gentry

Diff between twitteR versions 0.99.4 dated 2011-04-14 and 0.99.6 dated 2011-04-24

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Package trio updated to version 1.2.0 with previous version 1.1.22 dated 2011-04-04

Title: Detection of disease-associated SNP interactions in case-parent trio data
Description: Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regreesion, to impute missing genotypes in trios, or to simulate case-parent trios with disease risk dependent on SNP interaction.
Author: Holger Schwender, Qing Li
Maintainer: Holger Schwender

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Package topicmodels updated to version 0.0-10 with previous version 0.0-9 dated 2011-04-15

Title: Topic models
Description: Provides an interface to the C code for Latent Dirichlet Allocation (LDA) models and Correlated Topics Models (CTM) by David M. Blei and co-authors and the C++ code for fitting LDA models using Gibbs sampling by Xuan-Hieu Phan and co-authors.
Author: Bettina Gruen and Kurt Hornik
Maintainer: Bettina Gruen

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Package textir updated to version 1.5-4 with previous version 1.5.3 dated 2011-04-15

Title: Inverse Regression for Text Analysis
Description: A suite of tools for text and sentiment mining. This includes the `mnlm' function, for sparse multinomial logistic regression, `pls', a concise partial least squares routine, and the `topics' function (beta), for efficient estimation and dimension selection in latent topic models.
Author: Matt Taddy
Maintainer: Matt Taddy

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Package stoichcalc updated to version 1.1-2 with previous version 1.1-1 dated 2010-02-23

Title: R Functions for Solving Stoichiometric Equations
Description: Given a list of substance compositions, a list of substances involved in a process, and a list of constraints in addition to mass conservation of elementary constituents, the package contains functions to build the substance composition matrix, to analyze the uniqueness of process stoichiometry, and to calculate stoichiometric coefficients if process stoichiometry is unique (see Reichert, P. and Schuwirth, N., A generic framework for deriving process stoichiometry in environmental models, Environmental Modelling and Software, in review, 2010 for more details).
Author: Peter Reichert
Maintainer: Peter Reichert

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Package sensitivityPStrat updated to version 1.0-4 with previous version 1.0-3 dated 2011-02-04

Title: Principal Stratification Sensitivity Analysis Functions
Description: This package provides functions to perform principal stratification sensitivity analyses on datasets.
Author: Charles Dupont, Bryan Shepherd
Maintainer: Charles Dupont

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Package rsdepth updated to version 0.1-2 with previous version 0.1-1 dated 2011-04-11

Title: Ray Shooting Depth (i.e. RS Depth) functions for bivariate analysis
Description: Ray Shooting Depth functions are provided for bivariate analysis.
Author: Nabil Mustafa , Saurabh Ray , Mudassir Shabbir .
Maintainer: Mudassir Shabbir

Diff between rsdepth versions 0.1-1 dated 2011-04-11 and 0.1-2 dated 2011-04-24

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Package rgenoud updated to version 5.7-2 with previous version 5.7-1 dated 2010-08-27

Title: R version of GENetic Optimization Using Derivatives
Description: A genetic algorithm plus derivative optimizer
Author: Walter R. Mebane, Jr. , Jasjeet Singh Sekhon
Maintainer: Jasjeet Singh Sekhon

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Package reporttools updated to version 1.0.6 with previous version 1.0.5 dated 2010-03-04

Title: Generate LaTeX tables of descriptive statistics
Description: The functions in this package are especially helpful when writing reports of data analysis using Sweave.
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach

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Package rbounds updated to version 0.7 with previous version 0.5 dated 2010-08-17

Title: Perform Rosenbaum bounds sensitivity tests for matched data.
Description: Takes matched data and calculates Rosenbaum bounds for the treatment effect. Calculates bounds for binary data, Hodges-Lehmann point estimates, Wilcoxon signed-rank test, and for data with multiple matched controls. Is designed to work with the Matching package and operate on Match() objects.
Author: Luke J. Keele
Maintainer: Luke J. Keele

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Package quantreg updated to version 4.65 with previous version 4.62 dated 2011-04-06

Title: Quantile Regression
Description: Quantile regression and related methods.
Author: Roger Koenker
Maintainer: Roger Koenker

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New package pycno with initial version 1.0
Package: pycno
Type: Package
Title: Pycnophylactic Interpolation
Version: 1.0
Date: 2011-04-15
Author: Chris Brunsdon
Maintainer: Chris Briunsdon
Depends: stats, sp, maptools
Description: Given a SpatialPolygonsDataFrame and a set of populations for each polygon, compute a population density estimate based on Tobler's pycnophylactic interpolation algorithm. The result is a SpatialGridDataFrame.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2011-04-15 15:34:06 UTC; chrisbrunsdon
Repository: CRAN
Date/Publication: 2011-04-24 06:57:58

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Package pomp updated to version 0.36-4 with previous version 0.36-2 dated 2011-04-13

Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner, Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael Lavine, Daniel C. Reuman
Maintainer: Aaron A. King

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Package plyr updated to version 1.5.2 with previous version 1.5.1 dated 2011-04-13

Title: Tools for splitting, applying and combining data
Description: plyr is a set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each pieces and then put all the pieces back together. For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of plyr has been generously supported by BD (Becton Dickinson).
Author: Hadley Wickham
Maintainer: Hadley Wickham

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Package plotrix updated to version 3.1-2 with previous version 3.1 dated 2011-03-13

Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi, Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos
Maintainer: Jim Lemon

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Package plotmo updated to version 1.2-3 with previous version 1.2-0 dated 2011-04-14

Title: Plot a model's response while varying the values of the predictors.
Description: Plot a model's response when varying one or two predictors while holding the other predictors constant. A poor man's partial dependence plot.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow

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Package picante updated to version 1.3-0 with previous version 1.2-0 dated 2010-07-24

Title: R tools for integrating phylogenies and ecology
Description: Phylocom integration, community analyses, null-models, traits and evolution in R
Author: Steven W. Kembel , David D. Ackerly , Simon P. Blomberg , Will K. Cornwell , Peter D. Cowan , Matthew R. Helmus , Helene Morlon , Campbell O. Webb
Maintainer: Steven W. Kembel

Diff between picante versions 1.2-0 dated 2010-07-24 and 1.3-0 dated 2011-04-24

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Package pcse updated to version 1.7.1 with previous version 1.7 dated 2009-07-02

Title: Panel-Corrected Standard Error Estimation in R
Description: This package contains a function to estimate panel-corrected standard errors. Data may contain balanced or unbalanced panels.
Author: Delia Bailey and Jonathan N. Katz
Maintainer: Delia Bailey

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Package nlstools updated to version 0.0-11 with previous version 0.0-10 dated 2010-02-22

Title: Tools for nonlinear regression diagnostics
Description: Several tools for assessing the quality of fit of a gaussian nonlinear model are provided.
Author: Florent Baty and Marie-Laure Delignette-Muller , with contributions from Sandrine Charles, Jean-Pierre Flandrois
Maintainer: Florent Baty

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Package neuRosim updated to version 0.2-7 with previous version 0.1-1 dated 2010-11-23

Title: Functions to generate fMRI data including activated data, noise data and resting state data.
Description: The package allows users to generate fMRI time series or 4D data. Some high-level functions are created for fast data generation with only a few arguments and a diversity of functions to define activation and noise. For more advanced users it is possible to use the low-level functions and manipulate the arguments.
Author: Marijke Welvaert with contributions from Joke Durnez, Beatrijs Moerkerke, Yves Rosseel and Geert Verdoolaege
Maintainer: Marijke Welvaert

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Package mvtnorm updated to version 0.9-99 with previous version 0.9-96 dated 2011-01-28

Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles, random deviates and densities.
Author: Alan Genz, Frank Bretz, Tetsuhisa Miwa, Xuefei Mi, Friedrich Leisch, Fabian Scheipl, Bjoern Bornkamp, Torsten Hothorn
Maintainer: Torsten Hothorn

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Package mvabund updated to version 0.1-11.1 with previous version 0.1-11 dated 2010-11-20

Title: statistical methods for analysing multivariate abundance data
Description: A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See mvabund-package.Rd or type 'help("mvabund-package")' in R for details of overall package organization. The package is implemented with the Gnu Scientific Library (http://www.gnu.org/software/gsl/) and Rcpp (http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ APIs.
Author: Yi Wang, Ulrike Naumann, Stehpen Wright and David Warton
Maintainer: Yi Wang

Diff between mvabund versions 0.1-11 dated 2010-11-20 and 0.1-11.1 dated 2011-04-24

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Package mritc updated to version 0.3-3 with previous version 0.3-2 dated 2010-10-28

Title: MRI tissue classification.
Description: Various methods for MRI tissue classification.
Author: Dai Feng and Luke Tierney
Maintainer: Dai Feng

Diff between mritc versions 0.3-2 dated 2010-10-28 and 0.3-3 dated 2011-04-24

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Package matlab updated to version 0.8.6 with previous version 0.8-3 dated 2009-10-13

Title: MATLAB emulation package
Description: Emulate MATLAB code using R
Author: P. Roebuck
Maintainer: P. Roebuck

Diff between matlab versions 0.8-3 dated 2009-10-13 and 0.8.6 dated 2011-04-24

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New package mnspc with initial version 1.01
Package: mnspc
Version: 1.01
Date: 2011-02-21
Title: Multivariate Nonparametric Statistical Process Control
Author: Martin Bezener and Peihua Qiu
Maintainer: Martin Bezener
Depends: R (>= 2.6.0)
Description: Statistical process control for multivariate data that is not necessarily Gaussian distributed. A function is provided to categorize components of multivariate response vectors. Tools for setting up a CUSUM procedure for the transformed data are included. The CUSUM scheme can also be applied to the case when some (or all) of the multivariate response components are binary-categorical.
License: X11
Packaged: 2011-04-19 17:46:36 UTC; bezener
Repository: CRAN
Date/Publication: 2011-04-24 06:56:50

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Package logcondens updated to version 2.0.4 with previous version 2.0.3 dated 2011-03-05

Title: Estimate a Log-Concave Probability Density from iid Observations
Description: Given independent and identically distributed observations X(1), ..., X(n), this package allows to compute the maximum likelihood estimator (MLE) of a density as well as a smoothed version of it under the assumption that the density is log-concave, see Rufibach (2007) and Duembgen and Rufibach (2009). The main function of the package is 'logConDens' that allows computation of the log-concave MLE and its smoothed version. In addition, we provide functions to compute (1) the value of the density and distribution function estimates (MLE and smoothed) at a given point (2) the characterizing functions of the estimator, (3) to sample from the estimated distribution, (5) to compute a two-sample permutation test based on log-concave densities, (6) the ROC curve based on log-concave estimates within cases and controls. Finally, three datasets that have been used to illustrate log-concave density estimation are made available.
Author: Kaspar Rufibach and Lutz Duembgen
Maintainer: Kaspar Rufibach

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Package lmomco updated to version 1.3.4 with previous version 1.3.3 dated 2011-04-04

Title: L-moments, Censored L-moments, Trimmed L-moments, L-comoments, and Many Distributions
Description: The package implements the statistical theory of L-moments including L-moment estimation, probability-weighted moment estimation, parameter estimation for numerous familiar and not-so-familiar distributions, and L-moment estimation for the same distributions from the parameters. L-moments are derived from the expectations of order statistics and are linear with respect to the probability-weighted moments; choice of either can be made by mathematical convenience. L-moments are directly analogous to the well-known product moments; however, L-moments have many advantages including unbiasedness, robustness, and consistency with respect to the product moments. The method of L-moments can out perform the method of maximum likelihood. The lmomco package historically is oriented around canonical FORTRAN algorithms of J.R.M. Hosking, and the nomenclature for many of the functions parallels that of the Hosking library, which later became available in the lmom package. However, vast arrays of various extensions and curiosities are added by the author to aid and expand of the breadth of L-moment application. Such extensions include venerable statistics as Sen weighted mean, Gini mean difference, plotting positions, and conditional probability adjustment. Much extension of L-moment theory has occurred in recent years, including extension of L-moments into right-tail and left-tail censoring by known or unknown censoring threshold and also by indicator variable. E.A.H. Elamir and A.H. Seheult have developed the trimmed L-moments, which are implemented in this package. Further, Robert Serfling and Peng Xiao have extended L-moments into multivariate space; the so-called sample L-comoments are implemented here and might have considerable application in copula theory because they measure asymmetric correlation and higher co-moments. The supported distributions with moment type shown as L (L-moments) or TL (trimmed L-moments) and additional support for right-tail censoring ([RC]) include: Cauchy (TL), Exponential (L), Gamma (L), Generalized Extreme Value (L), Generalized Lambda (L & TL), Generalized Logistic (L), Generalized Normal (L), Generalized Pareto (L[RC] & TL), Gumbel (L), Kappa (L), Kumaraswamy (L), Normal (L), 3-parameter log-Normal (L), Pearson Type III (L), Rayleigh (L), Reverse Gumbel (L[RC]), Rice/Rician (L), Truncated Exponential (L), Wakeby (L), and Weibull (L).
Author: William H. Asquith
Maintainer: William H. Asquith

Diff between lmomco versions 1.3.3 dated 2011-04-04 and 1.3.4 dated 2011-04-24

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Package lfe updated to version 1.3-572 with previous version 1.3-512 dated 2011-04-08

Title: Linear Group Fixed Effects
Description: Estimates linear models with multiple group fixed effects
Author: Simen Gaure, The Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure

Diff between lfe versions 1.3-512 dated 2011-04-08 and 1.3-572 dated 2011-04-24

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Package lessR updated to version 1.8.7 with previous version 1.8.6 dated 2011-04-12

Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, rad() and full(), together read the csv data and generate descriptive statistics for all variables in the data frame, plus histograms and bar charts for all respective numerical and non-numerical variables. The function smd.t.test introduces the ODDSMD plot, which displays the Overlapping Density Distributions of two independent groups as well as a visual display of the mean difference and standardized mean difference. Other functions provide for descriptive statistics, the t-test from descriptive statistics, a comprehensive regression analysis, color plotting, color bar chart, color histogram, color box plot, density curves, a calibrated power curve plotted with colors, and the reading and display of csv formatted data. The function help.me provides a help system that suggests specific analyses and functions.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing

Diff between lessR versions 1.8.6 dated 2011-04-12 and 1.8.7 dated 2011-04-24

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Package lavaan updated to version 0.4-8 with previous version 0.4-7 dated 2011-02-21

Title: Latent Variable Analysis
Description: Fit a variety of latent variable models, including confirmatory factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel
Maintainer: Yves Rosseel

Diff between lavaan versions 0.4-7 dated 2011-02-21 and 0.4-8 dated 2011-04-24

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Package lattice updated to version 0.19-26 with previous version 0.19-23 dated 2011-04-04

Title: Lattice Graphics
Description: Lattice is a powerful and elegant high-level data visualization system, with an emphasis on multivariate data, that is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.
Author: Deepayan Sarkar
Maintainer: Deepayan Sarkar

Diff between lattice versions 0.19-23 dated 2011-04-04 and 0.19-26 dated 2011-04-24

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Package lassoshooting updated to version 0.1.3-7 with previous version 0.1.3-4 dated 2011-04-08

Title: L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
Description: L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting is fast. This implementation can choose which coefficients to penalize. It support coefficient-specific penalities and it can take X'X and X'y instead of X and y.
Author: Tobias Abenius
Maintainer: Tobias Abenius

Diff between lassoshooting versions 0.1.3-4 dated 2011-04-08 and 0.1.3-7 dated 2011-04-24

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Package ismev updated to version 1.36 with previous version 1.35 dated 2010-05-25

Title: An Introduction to Statistical Modeling of Extreme Values
Description: Functions to support the computations carried out in `An Introduction to Statistical Modeling of Extreme Values' by Stuart Coles. The functions may be divided into the following groups; maxima/minima, order statistics, peaks over thresholds and point processes.
Author: Original S functions by Stuart Coles, R port and R documentation files by Alec Stephenson.
Maintainer: Eric Gilleland

Diff between ismev versions 1.35 dated 2010-05-25 and 1.36 dated 2011-04-24

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Package fftw updated to version 1.0-3 with previous version 1.0-2 dated 2010-04-05

Title: Fast FFT and DCT based on FFTW
Description: Provides a simple and efficient wrapper around the fastest Fourier transform in the west (FFTW) library.
Author: Sebastian Krey Uwe Ligges Olaf Mersmann
Maintainer: Olaf Mersmann

Diff between fftw versions 1.0-2 dated 2010-04-05 and 1.0-3 dated 2011-04-24

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Package feature updated to version 1.2.7 with previous version 1.2.6 dated 2011-01-06

Title: Feature significance for multivariate kernel density estimation
Description: Feature significance for multivariate kernel density estimation
Author: Tarn Duong & Matt Wand
Maintainer: Tarn Duong

Diff between feature versions 1.2.6 dated 2011-01-06 and 1.2.7 dated 2011-04-24

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Package anchors updated to version 3.0-6 with previous version 3.0-4 dated 2009-07-19

Title: Statistical analysis of surveys with anchoring vignettes
Description: Tools for analyzing survey responses with anchors.
Author: Wand, Jonathan and Gary King, and Olivia Lau
Maintainer: Jonathan Wand

Diff between anchors versions 3.0-4 dated 2009-07-19 and 3.0-6 dated 2011-04-24

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Package glmnet updated to version 1.6 with previous version 1.5.3 dated 2011-02-28

Title: Lasso and elastic-net regularized generalized linear models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, poisson regression and the Cox model. The algorithm uses cyclical coordinate descent in a pathwise fashion, as described in the paper listed below.
Author: Jerome Friedman, Trevor Hastie, Rob Tibshirani
Maintainer: Trevor Hastie

Diff between glmnet versions 1.5.3 dated 2011-02-28 and 1.6 dated 2011-04-24

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Package gdsfmt updated to version 0.9.2 with previous version 0.9.1 dated 2011-01-09

Title: CoreArray Generic Data Structurs (GDS) R Interface
Description: R interface of CoreArray GDS is based on the CoreArray project initiated and developed by Xiuwen Zheng from 2007.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng

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Package gdata updated to version 2.8.2 with previous version 2.8.1 dated 2010-11-13

Title: Various R programming tools for data manipulation
Description: Various R programming tools for data manipulation
Author: Gregory R. Warnes, with contributions from Ben Bolker, Gregor Gorjanc, Gabor Grothendieck, Ales Korosec, Thomas Lumley, Don MacQueen, Arni Magnusson, Jim Rogers, and others
Maintainer: Gregory Warnes

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Package gMCP updated to version 0.6-2 with previous version 0.6-1 dated 2011-04-09

Title: A graphical approach to sequentially rejective multiple test procedures
Description: This package provides functions and a graphical user interface for graphical described multiple test procedures.
Author: Kornelius Rohmeyer, Florian Klinglmueller
Maintainer: Kornelius Rohmeyer

Diff between gMCP versions 0.6-1 dated 2011-04-09 and 0.6-2 dated 2011-04-24

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Package forensim updated to version 1.1-9 with previous version 1.1-8 dated 2010-10-16

Title: Statistical tools for the interpretation of forensic DNA mixtures
Description: Statistical methods and simulation tools for the interpretation of forensic DNA mixtures
Author: Hinda Haned
Maintainer: Hinda Haned

Diff between forensim versions 1.1-8 dated 2010-10-16 and 1.1-9 dated 2011-04-24

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Package flexmix updated to version 2.3-5 with previous version 2.3-4 dated 2011-02-28

Title: Flexible Mixture Modeling
Description: FlexMix implements a general framework for finite mixtures of regression models using the EM algorithm. FlexMix provides the E-step and all data handling, while the M-step can be supplied by the user to easily define new models. Existing drivers implement mixtures of standard linear models, generalized linear models and model-based clustering.
Author: Friedrich Leisch and Bettina Gruen
Maintainer: Bettina Gruen

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Package fishmethods updated to version 1.2-0 with previous version 1.1-0 dated 2010-09-03

Title: Fisheries Methods and Models in R
Description: Fishery methods and models from Quinn and Deriso (1999), Haddon(2001) , and literature.
Author: Gary A. Nelson
Maintainer: Gary A. Nelson

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Package exact2x2 updated to version 1.1-1.0 with previous version 1.1-0.0 dated 2010-10-06

Title: Exact Conditional Tests and Confidence Intervals for 2x2 tables
Description: Calculates Fisher's exact test, Blaker's exact test, or the exact McNemar's test with appropriate matching confidence intervals.
Author: M.P. Fay
Maintainer: M.P. Fay

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Package epoc updated to version 0.2.4-4 with previous version 0.2.3-4 dated 2011-04-08

Title: EPoC (Endogenous Perturbation analysis of Cancer)
Description: Estimates sparse matrices A or G using fast lasso regression from mRNA transcript levels Y and CNA profiles U. Two models are provided, EPoC A where AY + U + R = 0 and EPoC G where Y = GU + E, the matrices R and E are so far treated as noise. For details see the reference and the manual page of `lassoshooting'.
Author: Rebecka Jornsten, Tobias Abenius, Sven Nelander
Maintainer: Tobias Abenius

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Package diversitree updated to version 0.6-5 with previous version 0.6-3 dated 2011-01-27

Title: diversitree: comparative phylogenetic tests of diversification
Description: Contains a number of comparative phylogenetic methods, mostly focussing on analysing diversification and character evolution. Contains implementations of BiSSE (Binary State Speciation and Extinction; Maddison et al. 2007: Syst. Biol. 56: 701) and its unresolved tree extensions (FitzJohn et al. 2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation and Extinction), QuaSSE (Quantitative State Speciation and Extinction; FitzJohn 2010: Syst. Biol. 69: 619), and GeoSSE (Geographic State Speciation and Extinction; Goldberg et al. 2011: Syst. Biol.). Other included methods include Markov models of discrete and continuous trait evolution and constant rate speciation and extinction.
Author: Richard G. FitzJohn , with GeoSSE by Emma E. Goldberg .
Maintainer: Richard G. FitzJohn

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New package devEMF with initial version 0.9
Package: devEMF
Type: Package
Title: EMF graphics output device
Version: 0.9
Date: 2011-4-19
Author: Philip Johnson
Maintainer: Philip Johnson
Description: Output graphics to EMF (enhanced meta file).
License: GPL-3
Packaged: 2011-04-19 22:51:07 UTC; pjohnson
Repository: CRAN
Date/Publication: 2011-04-24 06:07:26

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Package descr updated to version 0.3.4 with previous version 0.3.3 dated 2011-02-17

Title: Descriptive statistics
Description: This package contains functions to describe weighted categorical variables and functions to facilitate the character encoding conversion of objects.
Author: Jakson Aquino. Includes R source code and/or documentation written by Dirk Enzmann, Marc Schwartz, and Nitin Jain
Maintainer: Jakson Aquino

Diff between descr versions 0.3.3 dated 2011-02-17 and 0.3.4 dated 2011-04-24

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Package data.table updated to version 1.6 with previous version 1.5.3 dated 2011-02-11

Title: Extension of data.frame for fast indexing, fast ordered joins and fast grouping.
Description: Enhanced data.frame. Fast indexing, fast ordered joins and fast grouping in a short and flexible syntax. i and j may be expressions of column names directly, for faster development. Example: X[Y] is a fast join for large data.
Author: Matthew Dowle with many contributions from Tom Short. See SVN logs on R-Forge.
Maintainer: M Dowle and T Short

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New package concreg with initial version 0.1
Package: concreg
Type: Package
Title: Concordance regression
Version: 0.1
Date: 2009-03-10
Author: R by Meinhard Ploner, Daniela Dunkler, Georg Heinze, Fortran by Georg Heinze
Maintainer:
Depends: R (>= 2.4.0), survival
Description: Concordance regression
License: GPL
Packaged: 2011-04-18 11:39:26 UTC; Georg
Repository: CRAN
Date/Publication: 2011-04-24 06:07:12

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Package coarseDataTools updated to version 0.5.1 with previous version 0.3 dated 2010-08-18

Title: A collection of functions to help with analysis of coarse infectious disease data
Description: This package contains functions to analyze coarse data. Its development was motivated by applications to infectious disease: in particular, problems with estimating the incubation period and the case fatality ratio of a given disease. Sample data files are included in the package.
Author: Nicholas G. Reich , Justin Lessler
Maintainer: Nicholas G. Reich

Diff between coarseDataTools versions 0.3 dated 2010-08-18 and 0.5.1 dated 2011-04-24

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Package cgdsr updated to version 1.1.4 with previous version 1.1 dated 2011-03-02

Title: R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS).
Description: The package provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
Author: Anders Jacobsen
Maintainer:

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Package bpca updated to version 1.0-8 with previous version 1.0-5 dated 2011-04-10

Title: Biplot of Multivariate Data Based on Principal Components Analysis
Description: Implements biplot (2d and 3d) of multivariate data based on principal components analysis and diagnostic tools of the quality of the reduction.
Author: Jose Claudio Faria & Clarice Garcia Borges Demetrio
Maintainer: Jose Claudio Faria

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Package bfast updated to version 1.2-1 with previous version 1.2 dated 2011-02-25

Title: BFAST: Breaks For Additive Seasonal and Trend
Description: BFAST integrates the decomposition of time series into trend, seasonal, and remainder components with methods for detecting and characterizing abrupt changes within the trend and seasonal components. BFAST can be used to analyze different types of satellite image time series and can be applied to other disciplines dealing with seasonal or non-seasonal time series, such as hydrology, climatology, and econometrics. The algorithm can be extended to label detected changes with information on the parameters of the fitted piecewise linear models.
Author: Jan Verbesselt, with contributions from Rob Hyndman
Maintainer: Jan Verbesselt

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Package ascii updated to version 1.3 with previous version 1.2 dated 2011-03-05

Title: Export R objects to several markup languages
Description: Coerce R object to asciidoc, txt2tags, restructuredText, org or textile syntax. Package comes with a set of drivers for Sweave.
Author: David Hajage
Maintainer: David Hajage

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Package adehabitatMA updated to version 0.3 with previous version 0.2 dated 2011-03-19

Title: Tools to Deal with Raster Maps
Description: A collection of tools to deal with raster maps
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge

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Package adehabitatLT updated to version 0.3 with previous version 0.2 dated 2011-03-19

Title: Analysis of animal movements
Description: A collection of tools for the analysis of animal movements
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge

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Package adehabitatHS updated to version 0.3.1 with previous version 0.2 dated 2011-03-19

Title: Analysis of habitat selection by animals
Description: A collection of tools for the analysis of habitat selection
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge

Diff between adehabitatHS versions 0.2 dated 2011-03-19 and 0.3.1 dated 2011-04-24

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Package adehabitatHR updated to version 0.3 with previous version 0.2 dated 2011-03-19

Title: Home range Estimation
Description: A collection of tools for the estimation of animals home range
Author: Clement Calenge, contributions from Scott Fortmann-Roe
Maintainer: Clement Calenge

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Package adehabitat updated to version 1.8.5 with previous version 1.8.4 dated 2011-03-19

Title: Analysis of habitat selection by animals
Description: A collection of tools for the analysis of habitat selection by animals
Author: Clement Calenge, contributions from Mathieu Basille, Stephane Dray and Scott Fortmann-Roe
Maintainer: Clement Calenge

Diff between adehabitat versions 1.8.4 dated 2011-03-19 and 1.8.5 dated 2011-04-24

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Package VennDiagram updated to version 1.0.1 with previous version 1.0.0 dated 2011-03-01

Title: Generate high-resolution Venn and Euler plots
Description: A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros

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Package TunePareto updated to version 2.0 with previous version 1.0 dated 2010-08-16

Title: Multi-objective parameter tuning for classifiers
Description: Generic methods for parameter tuning of classification algorithms using multiple scoring functions
Author: Christoph Müssel, Hans Kestler
Maintainer: Hans Kestler

Diff between TunePareto versions 1.0 dated 2010-08-16 and 2.0 dated 2011-04-24

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 30 files changed, 870 insertions(+), 810 deletions(-)

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Package TIMP updated to version 1.10.1 with previous version 1.10 dated 2010-08-24

Title: a problem solving environment for fitting separable nonlinear models in physics and chemistry applications
Description: TIMP is a problem solving environment for fitting separable nonlinear models to measurements arising in physics and chemistry experiments, and has been extensively applied to time-resolved spectroscopy and FLIM-FRET data.
Author: Katharine M. Mullen, Joris J. Snellenburg, Sergey Laptenok, David Nicolaides, Ivo H.M. van Stokkum
Maintainer: Joris J. Snellenburg

Diff between TIMP versions 1.10 dated 2010-08-24 and 1.10.1 dated 2011-04-24

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 TIMP-1.10.1/TIMP/R/rescomp.R            |   21 +++++++++++++++++----
 TIMP-1.10.1/TIMP/Rplots.pdf             |    6 +++---
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 10 files changed, 42 insertions(+), 23 deletions(-)

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Package SemiParBIVProbit updated to version 2.0 with previous version 1.0-3 dated 2011-04-12

Title: Semiparametric Bivariate Probit Modelling
Description: Routine for bivariate probit modelling with linear predictors specified using parametric and nonparametric components.
Author: Giampiero Marra and Rosalba Radice
Maintainer: Giampiero Marra

Diff between SemiParBIVProbit versions 1.0-3 dated 2011-04-12 and 2.0 dated 2011-04-24

 ChangeLog                          |   13 +-
 DESCRIPTION                        |    6 -
 R/AT.r                             |    5 +
 R/SemiParBIVProbit.r               |  177 ++++++++++++++++---------------------
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 17 files changed, 203 insertions(+), 170 deletions(-)

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New package Rook with initial version 1.0-1
Package: Rook
Type: Package
Title: Rook - a web server interface for R
Version: 1.0-1
Date: 2011-04-14
Author: Jeffrey Horner
Maintainer: Jeffrey Horner
Description: This package contains the Rook specification and convenience software for building and running Rook applications. To get started, be sure and read the 'Rook' help file first.
Depends: R (>= 2.13.0), utils, tools, methods, brew
License: GPL-2
LazyLoad: yes
Packaged: 2011-04-21 20:38:18 UTC; hornerj
Repository: CRAN
Date/Publication: 2011-04-24 06:04:29

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Package RcppArmadillo updated to version 0.2.19 with previous version 0.2.18 dated 2011-04-04

Title: Rcpp integration for Armadillo templated linear algebra library
Description: R and Armadillo integration using Rcpp Armadillo is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. A delayed evaluation approach is employed (during compile time) to combine several operations into one, and to reduce (or eliminate) the need for temporaries. This is accomplished through recursive templates and template meta-programming. This library is useful if C++ has been decided as the language of choice (due to speed and/or integration capabilities), rather than another language. The RcppArmadillo package includes the header files from the templated Armadillo library (currently version 1.2.0). Thus users do not need to install Armadillo itself in order to use RcppArmadillo. This Armadillo integration provides a nice illustration of the capabilities of the Rcpp package for seamless R and C++ integration. Armadillo is licensed under the GNU LGPL version 3 or later, while RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licenses under the GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates

Diff between RcppArmadillo versions 0.2.18 dated 2011-04-04 and 0.2.19 dated 2011-04-24

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 RcppArmadillo-0.2.19/RcppArmadillo/ChangeLog                                               |   10 
 RcppArmadillo-0.2.19/RcppArmadillo/DESCRIPTION                                             |   10 
 RcppArmadillo-0.2.19/RcppArmadillo/R/fastLm.R                                              |    2 
 RcppArmadillo-0.2.19/RcppArmadillo/inst/NEWS                                               |   22 
 RcppArmadillo-0.2.19/RcppArmadillo/inst/doc/Makefile                                       |    5 
 RcppArmadillo-0.2.19/RcppArmadillo/inst/doc/RcppArmadillo-unitTests.pdf                    |binary
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 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/arma_ostream_meat.hpp       |   14 
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/arma_ostream_proto.hpp      |    4 
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp            |    6 
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp             |  128 +--
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/blas_proto.hpp              |   92 +-
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp          |   12 
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/config.hpp                  |    3 
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/constants.hpp               |   20 
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/diskio_meat.hpp             |    2 
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 19 files changed, 460 insertions(+), 270 deletions(-)

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New package RTAQ with initial version 0.1
Package: RTAQ
Type: Package
Title: RTAQ: Tools for the analysis of trades and quotes in R
Version: 0.1
Author: Kris Boudt, Jonathan Cornelissen
Maintainer: Jonathan Cornelissen
Description: The Trades and Quotes data of the New York Stock Exchange is a popular input for the implementation of intraday trading strategies, the measurement of liquidity and volatility and investigation of the market microstructure, among others. This package contains a collection of R functions to carefully clean and match the trades and quotes data, calculate ex post liquidity and volatility measures and detect price jumps in the data.
Depends: xts, timeDate
Suggests: realized, robustbase, cubature, mvtnorm, chron
License: GPL
LazyLoad: yes
Packaged: 2011-04-20 12:51:30 UTC; n09022
Repository: CRAN
Date/Publication: 2011-04-24 06:03:59

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