Title:  SMACOF for Multidimensional Scaling.  
Diff between smacof versions 1.1-3 dated 2011-03-16 and 1.2-0 dated 2011-05-26 
Description:  This package provides the following approaches of
multidimensional scaling (MDS) based on stress minimization by
means of majorization (smacof): Simple smacof on symmetric
dissimilarity matrices, smacof for rectangular matrices
(unfolding models), smacof with constraints on the
configuration, three-way smacof for individual differences
(including constraints for idioscal, indscal, and identity),
and spherical smacof (primal and dual algorithm). Each of these
approaches is implemented in a metric and nonmetric manner
including primary, secondary, and tertiary approaches for tie
handling. Jackknife and permutation tests are included as well. 
Author:  Jan de Leeuw, Patrick Mair 
Maintainer:  Jan de Leeuw 
 DESCRIPTION              |   16 +++++----
 NAMESPACE                |    8 ++++
 R/deleteOne.R            |only
 R/jackknife.R            |only
 R/jackknife.smacofB.R    |only
 R/permtest.R             |only
 R/permtest.smacofB.R     |only
 R/plot.smacof.R          |   12 +++++--
 R/plot.smacofID.r        |   11 ++++--
 R/plot.smacofJK.R        |only
 R/plot.smacofPerm.R      |only
 R/plot.smacofR.R         |   49 +++++++++++++++++-----------
 R/print.smacofJK.R       |only
 R/print.smacofPerm.R     |only
 R/procrustus.R           |only
 R/smacofConstraint.R     |   20 +++++++++++
 R/smacofIndDiff.R        |   80 +++++++++++++++++++++++++----------------------
 R/smacofSym.R            |    2 -
 data/EW_ger.rda          |binary
 data/bread.rda           |binary
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 data/stardist.rda        |binary
 data/trading.rda         |binary
 data/winedat.rda         |binary
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 inst/doc/plotje.pdf      |binary
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 man/helm.Rd              |only
 man/jackknife.smacofB.Rd |only
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 man/plot.smacof.rd       |   21 +++++++-----
 man/smacofConstraint.rd  |   40 +++++++++++++++++------
 man/smacofIndDiff.Rd     |   35 +++++++++++++++++---
 man/smacofRect.Rd        |   14 ++++++--
 man/smacofSym.Rd         |    6 ++-
 45 files changed, 215 insertions(+), 99 deletions(-)
Title:  arulesViz - Visualizing Association Rules and Frequent Itemsets  
Diff between arulesViz versions 0.1-2 dated 2011-05-24 and 0.1-3 dated 2011-05-26 
Description:  Various visualization techniques for association rules and
itemsets. The packages also includes several interactive
visualizations for rule exploration. This package extends
package arules. 
Author:  Michael Hahsler and Sudheer Chelluboina 
Maintainer:  Michael Hahsler 
 DESCRIPTION            |   20 -
 NAMESPACE              |    2 
 R/AAA_helpers.R        |    4 
 R/graph.R              |  721 +++++++++++++++++++++++++++----------------------
 R/save.R               |   89 ------
 inst/doc/arulesViz.Rnw |   25 -
 inst/doc/arulesViz.bib |   15 -
 inst/doc/arulesViz.pdf |binary
 man/abbreviate.Rd      |   46 ---
 man/plot.Rd            |  222 ++++++++-------
 man/save.Rd            |   62 +---
 11 files changed, 609 insertions(+), 597 deletions(-)
Title:  Traveling Salesperson Problem (TSP)  
Diff between TSP versions 1.0-2 dated 2011-01-14 and 1.0-3 dated 2011-05-26 
Description:  Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP). The
package provides some simple algorithms and an interface to
Concorde, the currently fastest TSP solver. Concorde itself is
not included in the package and has to be obtained separately. 
Author:  Michael Hahsler and Kurt Hornik 
Maintainer:  Michael Hahsler 
 TSP-1.0-2/TSP/Work                 |only
 TSP-1.0-3/TSP/DESCRIPTION          |   17 +++++++++--------
 TSP-1.0-3/TSP/R/tsp_concorde.R     |   13 ++++++++-----
 TSP-1.0-3/TSP/data/USCA312.rda     |binary
 TSP-1.0-3/TSP/data/USCA312_map.rda |binary
 TSP-1.0-3/TSP/data/USCA50.rda      |binary
 TSP-1.0-3/TSP/inst/doc/TSP.pdf     |binary
 TSP-1.0-3/TSP/man/ATSP.Rd          |    3 ---
 TSP-1.0-3/TSP/man/Concorde.Rd      |    6 ------
 TSP-1.0-3/TSP/man/TOUR.Rd          |    6 ------
 TSP-1.0-3/TSP/man/TSP.Rd           |    3 ---
 TSP-1.0-3/TSP/man/TSPLIB.Rd        |    6 ------
 TSP-1.0-3/TSP/man/USCA312.Rd       |    2 --
 TSP-1.0-3/TSP/man/cut_tour.Rd      |    4 ----
 TSP-1.0-3/TSP/man/solve_TSP.Rd     |    3 ---
 TSP-1.0-3/TSP/man/tour_length.Rd   |    2 --
 16 files changed, 17 insertions(+), 48 deletions(-)
Title:  Seismic Time Series Analysis Tools  
Diff between RSEIS versions 2.5-8 dated 2011-03-31 and 2.5-10 dated 2011-05-26 
Description:  Multiple interactive codes to view and analyze seismic
data, via spectrum analysis, wavelet transforms, particle
motion, hodograms.  Includes general time-series tools,
plotting, filtering, interactive display. 
Author:  Jonathan M. Lees 
Maintainer:  Jonathan M. Lees
 DESCRIPTION          |    6 +-
 R/FILT.spread.R      |    2 
 R/Mine.seis.R        |   16 ++++++-
 R/fixcomps.R         |    1 
 R/pickFUNCS.R        |  113 ++++++++++++++++++++++++++++++++++++++++++++++++++-
 R/plotDB.R           |   12 ++++-
 R/swig.ALLPX.R       |   28 +++++++++---
 R/swig.R             |   32 +++++++++++---
 R/view.seis.R        |    2 
 inst/doc/hodo.Rnw    |    4 -
 inst/doc/hodo.pdf    |binary
 inst/doc/rseis.Rnw   |   24 +++++-----
 inst/doc/rseis.pdf   |binary
 man/Mine.seis.Rd     |    8 ++-
 man/RSEIS-package.Rd |    2 
 man/YPIX.Rd          |   26 +++++++++++
 16 files changed, 233 insertions(+), 43 deletions(-)
Title:  Graphics for Spherical Distributions and Earthquake Focal
Mechanisms  
Diff between RFOC versions 1.1-0.1 dated 2011-02-18 and 2.0-00 dated 2011-05-26 
Description:  Graphics for statistics on a sphere, as applied to
geological fault data, crystalogaphy, earthquake focal
mechanisms, radiation patterns, ternary plots and
geographical/geological maps. 
Author:  Jonathan M. Lees 
Maintainer:  Jonathan M. Lees
 DESCRIPTION           |   10 +++++-----
 R/Beachfoc.R          |    6 +++++-
 R/SDRfoc.R            |    9 ++++++++-
 R/TEACHFOC.R          |    4 ++--
 R/faultplane.R        |    2 +-
 R/getCMT.R            |    8 +++-----
 R/lowplane.R          |    2 +-
 R/mijsdr.R            |only
 R/plotmanyfoc.R       |    6 ++++--
 R/rotateFoc.R         |only
 R/xsecmanyfoc.R       |only
 inst/doc/focalmec.Rnw |   36 ++++++++++++++++++------------------
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 man/getCMT.Rd         |   40 ++++++++++++++++++++++++++++++++++++++--
 man/getUWfocs.Rd      |   29 ++++++++++++++++++++++++++++-
 man/mijsdr.Rd         |only
 man/nipXY.Rd          |   44 +++++++++++++++++++++++++++++++++++++++++++-
 man/plotmanyfoc.Rd    |    7 +++++--
 man/rotateFoc.Rd      |only
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 25 files changed, 163 insertions(+), 44 deletions(-)
Title:  Topographic and Geologic Mapping  
Diff between GEOmap versions 1.5-13 dated 2011-03-30 and 1.6-00 dated 2011-05-26 
Description:  Set of routines for making Map Projections (forward and
inverse), Topographic Maps, Perspective plots, Geological Maps,
geological map symbols, geological databases, interactive
plotting and selection of focus regions. 
Author:  Jonathan M. Lees 
Maintainer:  Jonathan M. Lees
 DESCRIPTION           |    6 -
 R/XSECEQ.R            |  147 +++++++++++++++++++++++++++++--
 R/XSECwin.R           |  236 +++++++++++++++++++++++++++++++++-----------------
 R/eqswath.R           |    2 
 R/list.GEOmap.R       |   34 ++++++-
 R/maplim.R            |only
 R/plotGEOmap.R        |    5 +
 R/plotGEOmapXY.R      |   91 +++++++++----------
 R/polyGEOmapXY.R      |only
 data/EHB.LLZ.RData    |binary
 data/NSWath.RData     |binary
 data/coastmap.RData   |binary
 inst/doc/GEOmap.Rnw   |   24 ++---
 inst/doc/GEOmap.pdf   |binary
 man/GEOmap-package.Rd |    2 
 man/linesGEOmapXY.Rd  |    4 
 man/list.GEOmap.Rd    |   46 ++++++++-
 man/maplim.Rd         |only
 18 files changed, 440 insertions(+), 157 deletions(-)
Title:  Multi-state Markov and hidden Markov models in continuous time  
Diff between msm versions 1.0 dated 2010-11-25 and 1.0.1 dated 2011-05-26 
Description:  Functions for fitting general continuous-time Markov and
hidden Markov multi-state models to longitudinal data.  Both
Markov transition rates and the hidden Markov output process
can be modelled in terms of covariates, which may be constant
or piecewise-constant in time.  A variety of observation
schemes are supported, including processes observed at
arbitrary times (panel data), continuously-observed processes,
and censored states. 
Author:  Christopher Jackson 
Maintainer:  Christopher Jackson 
 msm-1.0.1/msm/ChangeLog               |   35 +++-
 msm-1.0.1/msm/DESCRIPTION             |    9 -
 msm-1.0.1/msm/R/msm.R                 |   14 -
 msm-1.0.1/msm/R/outputs.R             |    2 
 msm-1.0.1/msm/R/utils.R               |    2 
 msm-1.0.1/msm/data/aneur.txt.gz       |only
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 msm-1.0.1/msm/inst/NEWS               |   10 +
 msm-1.0.1/msm/inst/doc/msm-manual.pdf |binary
 msm-1.0.1/msm/man/boot.msm.Rd         |   16 +
 msm-1.0.1/msm/man/msm.Rd              |  193 +++++++++++-----------
 msm-1.0.1/msm/man/prevalence.msm.Rd   |    4 
 msm-1.0.1/msm/src/lik.c               |  292 +++++++++++++++++-----------------
 msm-1.0.1/msm/tests/misc.R            |    2 
 msm-1.0.1/msm/tests/pci.R             |   17 +
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 23 files changed, 337 insertions(+), 259 deletions(-)
Title:  Forensic Genetics DNA Mixture Separation  
Diff between mixsep versions 0.1-4 dated 2011-05-06 and 0.1-5 dated 2011-05-26 
Description:  Separates DNA mixtures using a statistical model within a
greedy algorithm. 
Author:  Torben Tvedebrink 
Maintainer:  Torben Tvedebrink 
 DESCRIPTION   |    8 ++---
 R/functions.R |    2 +
 R/gui.R       |   78 ++++++++++++++++++++++++++++++++++++++++++----------------
 R/mixsep.R    |    2 -
 4 files changed, 64 insertions(+), 26 deletions(-)
Title:  Efficient selection of undirected graphical models for
high-dimensional datasets  
Diff between gRapHD versions 0.2.1 dated 2011-04-26 and 0.2.2 dated 2011-05-26 
Description:  gRapHD is designed for efficient selection of
high-dimensional undirected graphical models. The package
provides tools for selecting trees, forests and decomposable
models minimizing information criteria such as AIC or BIC, and
for displaying the independence graphs of the models. It has
also some useful tools for analysing graphical structures. It
supports the use of discrete, continuous, or both types of
variables. 
Author:  Gabriel Coelho Goncalves de Abreu 
Maintainer:  Gabriel Coelho Goncalves de Abreu 
 gRapHD-0.2.1/gRapHD/man/as.gRapHD.rd      |only
 gRapHD-0.2.1/gRapHD/man/convertClass.rd   |only
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 gRapHD-0.2.1/gRapHD/man/summary.gRapHD.rd |only
 gRapHD-0.2.2/gRapHD/DESCRIPTION           |    7 
 gRapHD-0.2.2/gRapHD/NAMESPACE             |   20 -
 gRapHD-0.2.2/gRapHD/R/functions.r         |  489 ++++++++++++------------------
 gRapHD-0.2.2/gRapHD/R/gRapHD_class.r      |only
 gRapHD-0.2.2/gRapHD/man/CI.test.rd        |    2 
 gRapHD-0.2.2/gRapHD/man/DFS.rd            |    9 
 gRapHD-0.2.2/gRapHD/man/Degree.rd         |    3 
 gRapHD-0.2.2/gRapHD/man/MCS.rd            |    5 
 gRapHD-0.2.2/gRapHD/man/SubGraph.rd       |    2 
 gRapHD-0.2.2/gRapHD/man/adjMat.rd         |    4 
 gRapHD-0.2.2/gRapHD/man/calcStat.rd       |    2 
 gRapHD-0.2.2/gRapHD/man/ccoeff.rd         |    4 
 gRapHD-0.2.2/gRapHD/man/chStat.rd         |    4 
 gRapHD-0.2.2/gRapHD/man/convData.rd       |    2 
 gRapHD-0.2.2/gRapHD/man/dsCont.rd         |    2 
 gRapHD-0.2.2/gRapHD/man/dsDiscr.rd        |    2 
 gRapHD-0.2.2/gRapHD/man/dsMixed.rd        |    2 
 gRapHD-0.2.2/gRapHD/man/fit.rd            |    5 
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 gRapHD-0.2.2/gRapHD/man/gRapHD.rd         |    2 
 gRapHD-0.2.2/gRapHD/man/jTree.rd          |    5 
 gRapHD-0.2.2/gRapHD/man/minForest.Rd      |    4 
 gRapHD-0.2.2/gRapHD/man/modelDim.rd       |    2 
 gRapHD-0.2.2/gRapHD/man/modelFormula.rd   |    3 
 gRapHD-0.2.2/gRapHD/man/neighbourhood.rd  |    4 
 gRapHD-0.2.2/gRapHD/man/neighbours.rd     |    4 
 gRapHD-0.2.2/gRapHD/man/perfSets.rd       |    3 
 gRapHD-0.2.2/gRapHD/man/plot.gRapHD.rd    |    4 
 gRapHD-0.2.2/gRapHD/man/randTree.rd       |    4 
 gRapHD-0.2.2/gRapHD/man/rowProds.rd       |    2 
 gRapHD-0.2.2/gRapHD/man/shortPath.rd      |    4 
 gRapHD-0.2.2/gRapHD/man/sortMat.rd        |    2 
 gRapHD-0.2.2/gRapHD/man/stepw.rd          |    8 
 gRapHD-0.2.2/gRapHD/src/cond.c            |   14 
 gRapHD-0.2.2/gRapHD/src/minForest.c       |   17 -
 40 files changed, 268 insertions(+), 378 deletions(-)
Title:  Calculate efficiencies of group testing algorithms with
correlated responses  
Diff between gtcorr versions 0.1-2 dated 2011-05-13 and 0.2-1 dated 2011-05-26 
Description:  This package provides functions to calculate the
efficiencies (expected tests per unit) of hierarchical and
matrix group testing procedures.  Efficiencies can be
calculated in the presense of correlated responses under
multiple arrangements of clustesrs.  Efficiencies can also be
evaluated in the presense of test error. 
Author:  Sam Lendle 
Maintainer:  Sam Lendle 
 DESCRIPTION                     |    8 -
 NAMESPACE                       |    2 
 R/gtcorr.r                      |  179 +++++++++++++++++++++++++++++++++++++++-
 man/gtcorr.hierarchical.Rd      |   12 +-
 man/gtcorr.hierarchical.user.Rd |only
 man/gtcorr.matrix.Rd            |   12 +-
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 7 files changed, 197 insertions(+), 16 deletions(-)
Title:  A graphical approach to sequentially rejective multiple test
procedures  
Diff between gMCP versions 0.6-4 dated 2011-05-11 and 0.6-5 dated 2011-05-26 
Description:  This package provides functions and a graphical user
interface for graphical described multiple test procedures. 
Author:  Kornelius Rohmeyer, Florian Klinglmueller 
Maintainer:  Kornelius Rohmeyer 
 gMCP-0.6-4/gMCP/inst/R28                                                        |only
 gMCP-0.6-4/gMCP/inst/java-src/org/mutoss/config                                 |only
 gMCP-0.6-4/gMCP/inst/java-src/org/mutoss/gui/AboutDialog.java                   |only
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 gMCP-0.6-5/gMCP/DESCRIPTION                                                     |   12 +-
 gMCP-0.6-5/gMCP/INSTALL                                                         |   18 +---
 gMCP-0.6-5/gMCP/NAMESPACE                                                       |    1 
 gMCP-0.6-5/gMCP/NEWS                                                            |   22 ++++
 gMCP-0.6-5/gMCP/R/exampleGraphs.R                                               |   45 +++++++++-
 gMCP-0.6-5/gMCP/R/onLoad.R                                                      |   42 ++++++---
 gMCP-0.6-5/gMCP/R/startGUIs.R                                                   |    2 
 gMCP-0.6-5/gMCP/TODO                                                            |   17 ++-
 gMCP-0.6-5/gMCP/inst/build.xml                                                  |    2 
 gMCP-0.6-5/gMCP/inst/doc/AQuickStart.pdf                                        |binary
 gMCP-0.6-5/gMCP/inst/doc/gMCP.pdf                                               |binary
 gMCP-0.6-5/gMCP/inst/doc/gMCP/gMCP.Rnw                                          |   16 +++
 gMCP-0.6-5/gMCP/inst/doc/parametric.pdf                                         |binary
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 gMCP-0.6-5/gMCP/man/exampleGraphs.Rd                                            |   28 ++++--
 46 files changed, 157 insertions(+), 48 deletions(-)
Title:  Eyetracking Helper Functions  
Diff between eyetracking versions 1.0 dated 2011-05-26 and 1.1 dated 2011-05-26 
Description:  Misc function for working with eyetracking data 
Author:  Ryan M. Hope 
Maintainer:  Ryan M. Hope 
 DESCRIPTION                |    6 +++---
 R/subtendedAngle.R         |    8 ++++----
 man/eyetracking-package.Rd |    2 +-
 man/subtendedAngle.Rd      |    2 +-
 4 files changed, 9 insertions(+), 9 deletions(-)
Title:  Dendrochronology Program Library in R  
Diff between dplR versions 1.4.0 dated 2011-05-20 and 1.4.1 dated 2011-05-26 
Description:  This package contains functions for performing some
standard tree-ring analyses. 
Author:  Andy Bunn with contributions from Mikko Korpela, Franco Biondi,
and Christian Zang 
Maintainer:  Andy Bunn 
 ChangeLog                |  524 +++++++++++++++++++++++++
 DESCRIPTION              |   10 
 R/bai.in.R               |   54 +-
 R/bai.out.R              |   58 +-
 R/ccf.series.rwl.R       |  211 +++++-----
 R/chron.R                |   43 +-
 R/cms.R                  |  128 +++---
 R/combine.rwl.R          |   88 ++--
 R/corr.rwl.seg.R         |  583 ++++++++++++++--------------
 R/corr.series.seg.R      |  264 ++++++------
 R/crn.plot.R             |   61 +-
 R/detrend.R              |   65 ++-
 R/detrend.series.R       |  222 +++++-----
 R/exactmean.R            |   11 
 R/ffcsaps.R              |  241 ++++++-----
 R/gini.coef.R            |    9 
 R/glk.R                  |   56 +-
 R/helpers.R              |  337 ++++++++--------
 R/i.detrend.R            |   21 -
 R/i.detrend.series.R     |   33 -
 R/morlet.R               |  205 +++++-----
 R/normalize.xdate.R      |   45 +-
 R/normalize1.R           |   40 -
 R/qa.xdate.R             |   36 -
 R/rcs.R                  |  104 ++---
 R/read.crn.R             |  254 ++++++------
 R/read.fh.R              |  103 ++---
 R/read.ids.R             |   68 +--
 R/read.rwl.R             |   71 ++-
 R/read.tridas.R          |  512 +++++++++----------------
 R/read.tucson.R          |  297 +++++++-------
 R/rwi.stats.R            |  142 +++---
 R/rwi.stats.running.R    |  491 ++++++++++++------------
 R/sea.R                  |  130 ++----
 R/sens1.R                |    9 
 R/sens2.R                |    9 
 R/series.rwl.plot.R      |  239 +++++------
 R/skel.plot.R            |  437 ++++++++++-----------
 R/spag.plot.R            |   64 +--
 R/tbrm.R                 |   10 
 R/wavelet.plot.R         |  398 +++++++++----------
 R/wc.to.po.R             |only
 R/write.compact.R        |  219 +++++-----
 R/write.crn.R            |  247 +++++-------
 R/write.rwl.R            |   13 
 R/write.tucson.R         |  473 +++++++++++------------
 man/bai.in.Rd            |    2 
 man/bai.out.Rd           |    2 
 man/ccf.series.rwl.Rd    |    7 
 man/chron.Rd             |   16 
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 man/detrend.Rd           |   15 
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 man/read.compact.Rd      |    4 
 man/read.crn.Rd          |    9 
 man/read.fh.rd           |    2 
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 man/read.tridas.Rd       |    8 
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 man/sea.Rd               |    2 
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 man/write.compact.Rd     |    2 
 man/write.crn.Rd         |   10 
 man/write.rwl.Rd         |   11 
 man/write.tridas.Rd      |   39 +
 man/write.tucson.Rd      |    3 
 src/exactmean.c          |    8 
 src/exactsum.c           |  177 ++++----
 src/exactsum.h           |  132 ++++--
 src/gini.c               |  119 ++---
 src/rcompact.c           |  960 +++++++++++++++++++++++------------------------
 src/readloop.c           |   77 +--
 src/sens.c               |  187 ++++-----
 src/tbrm.c               |  205 ++++------
 80 files changed, 5122 insertions(+), 4602 deletions(-)
Title:  Bayesian quantile regression  
Diff between bayesQR versions 1.1 dated 2011-05-11 and 1.2 dated 2011-05-26 
Description:  Bayesian quantile regression using the asymmetric Laplace
distribution, both continuous as well as binary dependent
variables are supported. The package consists of
implementations of the methods of Yu & Moyeed (2001) and Benoit
& Van den Poel (2011). 
Author:  Dries F. Benoit, Rahim Al-Hamzawi, Keming Yu, Dirk Van den Poel 
Maintainer:  Dries F. Benoit 
 DESCRIPTION     |   10 +++++-----
 data            |only
 man/Prostate.Rd |only
 3 files changed, 5 insertions(+), 5 deletions(-)
Title:  Analogue and weighted averaging methods for palaeoecology  
Diff between analogue versions 0.6-23 dated 2010-03-13 and 0.7-0 dated 2011-05-26 
Description:  Fits Modern Analogue Technique and Weighted Averaging
transfer function models for prediction of environmental data
from species data, and related methods used in palaeoecology. 
Author:  Gavin L. Simpson, Jari Oksanen 
Maintainer:  Gavin L. Simpson 
 DESCRIPTION                   |   13 ++-
 R/Stratiplot.R                |  142 +++++++++++++++++++++++++++++++++++++-----
 R/Stratiplot.formula.R        |    3 
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 R/dissimilarities.R           |    6 +
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 R/predict.wa.R                |   18 ++---
 R/residLen.R                  |    2 
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 R/stdError.R                  |    8 +-
 R/summary.cma.R               |   43 +++++-------
 R/summary.logitreg.R          |    2 
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 R/timetrack.R                 |only
 R/tran.R                      |    8 +-
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 inst/THANKS                   |    7 --
 inst/doc/analogue_methods.pdf |binary
 man/Pollen.Rd                 |   15 ++++
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 man/logitreg.Rd               |   21 +++++-
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 man/panel.Stratiplot.Rd       |   29 +++++---
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 man/reconPlot.Rd              |   23 ++++--
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 src/distx.c                   |    8 ++
 src/distxy.c                  |    8 ++
 src/wastats.c                 |   10 ++
 89 files changed, 1075 insertions(+), 365 deletions(-)
Title:  JAR dependencies for the XLConnect package  
Diff between XLConnectJars versions 0.1-0 dated 2011-02-27 and 0.1-1 dated 2011-05-26 
Description:  This package provides external JAR dependencies for the
XLConnect package 
Author:  Mirai Solutions GmbH 
Maintainer:  Mirai Solutions GmbH 
 XLConnectJars-0.1-0/XLConnectJars/inst/java/poi-3.7.jar             |only
 XLConnectJars-0.1-0/XLConnectJars/inst/java/poi-ooxml-3.7.jar       |only
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 XLConnectJars-0.1-1/XLConnectJars/man/XLConnectJars-package.Rd      |    8 ++++----
 6 files changed, 9 insertions(+), 9 deletions(-)
Title:  Excel Connector for R  
Diff between XLConnect versions 0.1-3 dated 2011-02-27 and 0.1-4 dated 2011-05-26 
Description:  Manipulate Excel files from R 
Author:  Mirai Solutions GmbH 
Maintainer:  Mirai Solutions GmbH 
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 XLConnect-0.1-3/XLConnect/inst/java/XLConnect-0.1-3.jar                            |only
 XLConnect-0.1-4/XLConnect/DESCRIPTION                                              |   14 
 XLConnect-0.1-4/XLConnect/NAMESPACE                                                |   23 +
 XLConnect-0.1-4/XLConnect/R/col2idx.R                                              |only
 XLConnect-0.1-4/XLConnect/R/constants.R                                            |   11 
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 XLConnect-0.1-4/XLConnect/R/workbook.getSheets.R                                   |    2 
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 XLConnect-0.1-4/XLConnect/R/workbook.writeWorksheet.R                              |   10 
 XLConnect-0.1-4/XLConnect/R/writeWorksheetToFile.R                                 |    2 
 XLConnect-0.1-4/XLConnect/R/xlcCall.R                                              |   15 
 XLConnect-0.1-4/XLConnect/demo/00Index                                             |    1 
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 XLConnect-0.1-4/XLConnect/man/XLC.Rd                                               |  175 +++++-----
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 XLConnect-0.1-4/XLConnect/man/readWorksheetFromFile.Rd                             |    3 
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 XLConnect-0.1-4/XLConnect/man/saveWorkbook-methods.Rd                              |    6 
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 XLConnect-0.1-4/XLConnect/man/xlcCall.Rd                                           |   18 -
 86 files changed, 226 insertions(+), 159 deletions(-)
Title:  Reliability and factor analysis plugin  
Diff between DeducerPlugInScaling versions 0.0-6 dated 2010-10-04 and 0.0-7 dated 2011-05-26 
 
More information about DeducerPlugInScaling at CRAN
 
	    
Description:  A Deducer plug-in for factor analysis and reliability
analysis, using psych, GPArotation and mvnormtest packages. 
Author:  Alberto Mirisola and Ian Fellows 
Maintainer:  Alberto Mirisola 
 DESCRIPTION              |   10 +++++-----
 R/DeducerPlugInScaling.R |   42 ++++++++++--------------------------------
 2 files changed, 15 insertions(+), 37 deletions(-)
	    Permanent link
	  
Title:  WNOMINATE Roll Call Analysis Software.  
Diff between wnominate versions 0.94 dated 2007-09-01 and 0.95 dated 2011-05-26 
Description:  Estimates Poole and Rosenthal W-NOMINATE scores from roll
call votes supplied though a 'rollcall' object from package
'pscl'. 
Author:  Keith Poole 
Maintainer:  Jeffrey Lewis 
 wnominate-0.94/wnominate/data/UN.csv                    |only
 wnominate-0.94/wnominate/inst/doc/Rplots.ps             |only
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 wnominate-0.95/wnominate/HISTORY                        |    9 +++-
 wnominate-0.95/wnominate/R/wnominate.R                  |    7 ++-
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 wnominate-0.95/wnominate/inst/doc/Sweave.sty            |   22 +++++-----
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 wnominate-0.95/wnominate/inst/doc/wnominate.pdf         |binary
 wnominate-0.95/wnominate/man/UN.Rd                      |    6 +-
 wnominate-0.95/wnominate/man/generateTestData.Rd        |    6 +-
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 wnominate-0.95/wnominate/man/plot.cutlines.Rd           |    6 +-
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 wnominate-0.95/wnominate/man/qnprob.Rd                  |    6 +-
 wnominate-0.95/wnominate/man/sen90.Rd                   |    6 +-
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 wnominate-0.95/wnominate/man/wnominate.Rd               |    8 ++-
 wnominate-0.95/wnominate/src/Makevars.win               |    2 
 wnominate-0.95/wnominate/src/random_wrap.c              |    2 
 wnominate-0.95/wnominate/src/wnominate.f90              |   35 +++++++++-------
 32 files changed, 111 insertions(+), 85 deletions(-)
Title:  You didn't know you didn't know?  
Diff between unknownR versions 0.2 dated 2011-04-24 and 0.3 dated 2011-05-26 
Description:  Utility to quickly find useful functions in R that you
didn't know you didn't know. 
Author:  Matthew Dowle 
Maintainer:  Matthew Dowle 
 DESCRIPTION |    6 +++---
 NEWS        |   15 +++++++++++++++
 R/funlist.R |   17 ++++++++++++++++-
 3 files changed, 34 insertions(+), 4 deletions(-)
Title:  Interfaces to various state-of-art SVD and eigensolvers  
Diff between svd versions 0.1 dated 2011-03-14 and 0.2 dated 2011-05-26 
Description:  This package provides various R bindings to various SVD
and eigensolvers (PROPACK, nuTRLan) 
Author:  Anton Korobeynikov 
Maintainer:  Anton Korobeynikov 
 DESCRIPTION               |    8 ++++----
 src/Makevars              |   16 +++++++---------
 src/propack/dlansvd_irl.f |    2 +-
 3 files changed, 12 insertions(+), 14 deletions(-)
Title:  Data Analysis Using Regression and Multilevel/Hierarchical
Models  
Diff between arm versions 1.4-10.01 dated 2011-05-11 and 1.4-11 dated 2011-05-26 
Description:  R functions for processing lm, glm, mer and polr outputs. 
Author:  Andrew Gelman 
Maintainer:  Yu-Sung Su 
 CHANGELOG    |    4 ++++
 DESCRIPTION  |    8 ++++----
 R/bayesglm.R |    4 +++-
 3 files changed, 11 insertions(+), 5 deletions(-)
Title:  ANES Raking Implementation  
Diff between anesrake versions 0.65 dated 2011-04-28 and 0.70 dated 2011-05-26 
Description:  This package provides a comprehensive system for selecting
variables and weighting data to match the specifications of the
American National Election Studies.  The package includes
methods for identifying discrepant variables, raking data, and
assessing the effects of the raking algorithm.  It also allows
automated re-raking if target variables fall outside identified
bounds and allows greater user specification than other
available raking algorithms. A variety of simple weighted
statistics that were previously in this package (version .55
and earlier) have been moved to the package 'weights.' 
Author:  Josh Pasek 
Maintainer:  Josh Pasek 
 DESCRIPTION                |    8 ++++----
 R/anesrake.R               |    2 +-
 man/anesrake.Rd            |    2 +-
 man/anesrakefinder.Rd      |    2 +-
 man/discrep.Rd             |    2 +-
 man/generaldesigneffect.Rd |    2 +-
 man/rakelist.Rd            |    2 +-
 man/weightassess.Rd        |    2 +-
 8 files changed, 11 insertions(+), 11 deletions(-)
Title:  Rcpp integration for Armadillo templated linear algebra library  
Diff between RcppArmadillo versions 0.2.19 dated 2011-04-24 and 0.2.20 dated 2011-05-26 
Description:  R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 1.99.2). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licenses under the GNU GPL version 2 or later, as is the rest
of Rcpp. 
Author:  Romain Francois, Dirk Eddelbuettel and Doug Bates 
Maintainer:  Romain Francois, Dirk Eddelbuettel and Doug Bates
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 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/eOpCube_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/eOp_proto.hpp              |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/eglue_core_proto.hpp       |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/eop_core_proto.hpp         |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/field_proto.hpp            |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/fn_htrans.hpp              |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/forward_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_conv_proto.hpp        |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_cor_proto.hpp         |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_cov_proto.hpp         |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_cross_proto.hpp       |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_join_proto.hpp        |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_kron_proto.hpp        |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_mixed_proto.hpp       |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_relational_proto.hpp  |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_solve_proto.hpp       |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_times_proto.hpp       |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/glue_toeplitz_proto.hpp    |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/injector_proto.hpp         |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/lapack_proto.hpp           |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/mtGlueCube_proto.hpp       |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/mtGlue_proto.hpp           |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/mtOpCube_proto.hpp         |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/mtOp_proto.hpp             |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_chol_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_cor_proto.hpp           |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_cov_proto.hpp           |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_cumsum_proto.hpp        |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_cx_scalar_proto.hpp     |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_diagmat_proto.hpp       |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_diagvec_proto.hpp       |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_dot_proto.hpp           |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_dotext_proto.hpp        |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_find_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_flip_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_htrans_proto.hpp        |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_inv_proto.hpp           |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_max_proto.hpp           |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_mean_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_median_proto.hpp        |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_min_proto.hpp           |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_misc_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_pinv_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_princomp_cov_proto.hpp  |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_princomp_proto.hpp      |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_prod_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_relational_proto.hpp    |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_repmat_proto.hpp        |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_reshape_proto.hpp       |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_shuffle_proto.hpp       |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_sort_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_stddev_proto.hpp        |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_sum_proto.hpp           |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_trans_meat.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_trans_proto.hpp         |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_trimat_proto.hpp        |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/op_var_proto.hpp           |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/podarray_proto.hpp         |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/running_stat_proto.hpp     |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/running_stat_vec_proto.hpp |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/subview_cube_proto.hpp     |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/subview_elem1_proto.hpp    |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/subview_field_proto.hpp    |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/subview_proto.hpp          |only
 RcppArmadillo-0.2.19/RcppArmadillo/inst/include/armadillo_bits/wall_clock_proto.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/ChangeLog                                              |   20 
 RcppArmadillo-0.2.20/RcppArmadillo/DESCRIPTION                                            |   10 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/NEWS                                              |   26 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/examples                                          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/RcppArmadillo/Mat_meat.h                  |    8 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo                                 |  199 -
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Col_bones.hpp              |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp               |  519 +++
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp             |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp              |   96 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/GlueCube_bones.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Glue_bones.hpp             |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp              |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp               |  673 +++-
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/OpCube_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Op_bones.hpp               |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Proxy.hpp                  |   28 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/ProxyCube.hpp              |   20 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Row_bones.hpp              |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp               |  491 +++
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/arma_ostream_bones.hpp     |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/arma_ostream_meat.hpp      |   87 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/arma_static_assert.hpp     |   31 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp           |    6 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/arrayops_bones.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/arrayops_meat.hpp          |  143 -
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/atlas_bones.hpp            |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/auxlib_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp            |  772 ++++-
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/blas_bones.hpp             |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp         |   17 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/debug.hpp                  |   24 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/diagmat_proxy.hpp          |   93 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/diagview_bones.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/diagview_meat.hpp          |  128 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/diskio_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/diskio_meat.hpp            |  104 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/eGlueCube_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/eGlueCube_meat.hpp         |   14 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/eGlue_bones.hpp            |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/eGlue_meat.hpp             |   14 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/eOpCube_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/eOp_bones.hpp              |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/eglue_core_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/eglue_core_meat.hpp        |  519 ++-
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/eop_core_bones.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/eop_core_meat.hpp          |  327 +-
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/field_bones.hpp            |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_accu.hpp                |   40 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_det.hpp                 |    7 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_diagmat.hpp             |    7 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_elem.hpp                |   62 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_eye.hpp                 |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_inv.hpp                 |   18 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_log_det.hpp             |    8 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_max.hpp                 |   38 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_mean.hpp                |   42 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_median.hpp              |   53 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_min.hpp                 |   38 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_ones.hpp                |   45 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_prod.hpp                |   20 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_randn.hpp               |   10 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_randu.hpp               |   12 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_stddev.hpp              |   20 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_strans.hpp              |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_syl_lyap.hpp            |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_symmat.hpp              |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_trans.hpp               |   35 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_var.hpp                 |   20 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/fn_zeros.hpp               |   12 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/forward_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/gemm.hpp                   |  337 --
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/gemm_mixed.hpp             |   59 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/gemv.hpp                   |  208 +
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_conv_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_conv_meat.hpp         |   16 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_cor_bones.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_cor_meat.hpp          |   12 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_cov_bones.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_cross_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_cross_meat.hpp        |   47 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_join_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_join_meat.hpp         |   46 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_kron_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_mixed_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_relational_bones.hpp  |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_solve_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_times_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_times_meat.hpp        |  493 +--
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_toeplitz_bones.hpp    |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/glue_toeplitz_meat.hpp     |    5 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/injector_bones.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/lapack_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/mtGlueCube_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/mtGlue_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/mtOpCube_bones.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/mtOp_bones.hpp             |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_chol_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_cor_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_cor_meat.hpp            |   14 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_cov_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_cumsum_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_cumsum_meat.hpp         |    9 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_cx_scalar_bones.hpp     |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_diagmat_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_diagmat_meat.hpp        |   10 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_diagvec_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_dot_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_dotext_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_find_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_flip_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_htrans_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_htrans_meat.hpp         |   98 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_inv_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_inv_meat.hpp            |   13 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_max_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_max_meat.hpp            |   57 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_mean_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_mean_meat.hpp           |   34 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_median_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_median_meat.hpp         |  214 -
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_min_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_min_meat.hpp            |   33 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_misc_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_pinv_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_pinv_meat.hpp           |   10 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_princomp_bones.hpp      |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_princomp_cov_bones.hpp  |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_prod_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_prod_meat.hpp           |   34 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_relational_bones.hpp    |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_repmat_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_repmat_meat.hpp         |   29 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_reshape_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_reshape_meat.hpp        |   32 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_shuffle_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_shuffle_meat.hpp        |   10 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_sort_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_stddev_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_stddev_meat.hpp         |   34 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_strans_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_strans_meat.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_sum_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_sum_meat.hpp            |   38 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_symmat_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_symmat_meat.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_trimat_bones.hpp        |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_trimat_meat.hpp         |  190 +
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_var_bones.hpp           |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/op_var_meat.hpp            |   37 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/operator_times.hpp         |   12 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/podarray_bones.hpp         |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/podarray_meat.hpp          |   57 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/promote_type.hpp           |   18 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/running_stat_bones.hpp     |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/running_stat_meat.hpp      |    2 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/running_stat_vec_bones.hpp |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/subview_bones.hpp          |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/subview_cube_bones.hpp     |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/subview_cube_meat.hpp      |   50 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/subview_elem1_bones.hpp    |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/subview_elem1_meat.hpp     |   24 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/subview_field_bones.hpp    |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/subview_field_meat.hpp     |   37 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/subview_meat.hpp           | 1423 +++++++++-
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/traits.hpp                 |   69 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/typedef_u64.hpp            |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/undefine_conflicts.hpp     |only
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/unwrap.hpp                 |   64 
 RcppArmadillo-0.2.20/RcppArmadillo/inst/include/armadillo_bits/wall_clock_bones.hpp       |only
 RcppArmadillo-0.2.20/RcppArmadillo/src/RcppArmadillo.cpp                                  |   27 
 253 files changed, 6400 insertions(+), 2358 deletions(-)