Title: Functions to access vegetation databases (Turboveg and VegetWeb)
and prepare data for analysis
Diff between vegdata versions 0.3.1 dated 2011-06-30 and 0.3.2 dated 2011-07-02
Description: Handling of vegetation data sets from personal Turboveg or
online VegetWeb Databases. Taxonomic harmonization of datasets
with the help of the German taxonomical standard list
"GermanSL".
Author: Florian Jansen
Maintainer: Florian Jansen
DESCRIPTION | 6 +++---
R/child.r | 4 ++--
inst/ChangeLog | 12 ++++++++----
inst/doc/vegdata.pdf |binary
4 files changed, 13 insertions(+), 9 deletions(-)
Title: classes and methods for spatio-temporal data
Diff between spacetime versions 0.4-4 dated 2011-06-21 and 0.5-0 dated 2011-07-02
Description: A package with classes and methods for spatio-temporal
data.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
spacetime-0.4-4/spacetime/TODO |only
spacetime-0.5-0/spacetime/DESCRIPTION | 8
spacetime-0.5-0/spacetime/R/STFDF-methods.R | 12
spacetime-0.5-0/spacetime/R/apply.R | 3
spacetime-0.5-0/spacetime/R/over.R | 59
spacetime-0.5-0/spacetime/R/stplot.R | 3
spacetime-0.5-0/spacetime/demo/CressieWikle.R | 16
spacetime-0.5-0/spacetime/inst/doc/spacetime.Rnw | 51
spacetime-0.5-0/spacetime/inst/doc/spacetime.pdf | 2575 +++++++++++------------
spacetime-0.5-0/spacetime/inst/doc/sto.Rnw | 119 -
spacetime-0.5-0/spacetime/inst/doc/sto.pdf | 1583 +++++++-------
spacetime-0.5-0/spacetime/man/over.Rd | 2
spacetime-0.5-0/spacetime/tests/basic.Rout.save | 36
13 files changed, 2348 insertions(+), 2119 deletions(-)
Title: Visualisation of hexagonal Kohonen maps
Diff between somplot versions 1.04 dated 2011-05-19 and 1.05 dated 2011-07-02
Description: The package provides the plot function som.plot() to
create high quality visualisations of hexagonal Kohonen maps
(self-organising maps).
Author: Benjamin Schulz, Andreas Dominik
Maintainer: Andreas Dominik
DESCRIPTION | 6 +++---
R/somplot.R | 2 +-
man/somplot-package.Rd | 4 ++--
3 files changed, 6 insertions(+), 6 deletions(-)
Title: Stochastic Approximation Expectation Maximization (SAEM)
algorithm
Diff between saemix versions 0.95 dated 2011-06-30 and 0.96 dated 2011-07-02
Description: The SAEM package implements the Stochastic Approximation
EM algorithm for parameter estimation in (non)linear mixed
effects models. The SAEM algorithm: - computes the maximum
likelihood estimator of the population parameters, without any
approximation of the model (linearization, quadrature
approximation,...), using the Stochastic Approximation
Expectation Maximization (SAEM) algorithm, - provides standard
errors for the maximum likelihood estimator - estimates the
conditional modes, the conditional means and the conditional
standard deviations of the individual parameters, using the
Hastings-Metropolis algorithm. Several applications of SAEM in
agronomy, animal breeding and PKPD analysis have been published
by members of the Monolix group (http://software.monolix.org/).
Author: Emmanuelle Comets, Audrey Lavenu, Marc Lavielle.
Maintainer: Emmanuelle Comets
saemix-0.95/saemix/inst/saemix.pdf |only
saemix-0.95/saemix/inst/userguide_saemix.pdf |only
saemix-0.96/saemix/DESCRIPTION | 6 +-
saemix-0.96/saemix/R/main.R | 66 +++++++++++++------------
saemix-0.96/saemix/R/zzz.R | 5 +
saemix-0.96/saemix/inst/doc |only
saemix-0.96/saemix/man/PD1.saemix.Rd | 5 +
saemix-0.96/saemix/man/conddist.saemix.Rd | 2
saemix-0.96/saemix/man/default.saemix.plots.Rd | 2
saemix-0.96/saemix/man/fim.saemix.Rd | 2
saemix-0.96/saemix/man/llgq.saemix.Rd | 2
saemix-0.96/saemix/man/llis.saemix.Rd | 2
saemix-0.96/saemix/man/map.saemix.Rd | 3 -
saemix-0.96/saemix/man/oxboys.saemix.Rd | 3 -
saemix-0.96/saemix/man/psi.Rd | 2
saemix-0.96/saemix/man/saemix-package.Rd | 2
saemix-0.96/saemix/man/saemix.Rd | 3 -
saemix-0.96/saemix/man/saemix.plot.data.Rd | 2
saemix-0.96/saemix/man/saemix.plot.select.Rd | 2
saemix-0.96/saemix/man/saemix.plots.Rd | 2
saemix-0.96/saemix/man/theo.saemix.Rd | 6 +-
saemix-0.96/saemix/man/yield.saemix.Rd | 3 -
22 files changed, 67 insertions(+), 53 deletions(-)
Title: Random name generating function and data set
Diff between randomNames versions 0.0-2 dated 2011-06-15 and 0.0-3 dated 2011-07-02
Description: Function to generate random gender and ethnicity correct
first and/or last names. Names are chosen proportionally based
upon their probability of appearing in a large scale data base
of real names.
Author: Damian W. Betebenner
Maintainer: Damian W. Betebenner
DESCRIPTION | 10 +++++-----
R/randomNames.R | 8 ++++++--
inst/CITATION | 4 ++--
inst/NEWS | 4 ++++
man/randomNames-package.Rd | 4 ++--
5 files changed, 19 insertions(+), 11 deletions(-)
Title: Flexible Copula Density Estimation with Penalized Hierarchical
B-Splines
Diff between pencopula versions 0.3 dated 2011-06-28 and 0.3.1 dated 2011-07-02
Description: Flexible copula density estimation with penalized
hierarchical B-Splines.
Author: Christian Schellhase
Maintainer: Christian Schellhase
DESCRIPTION | 8 ++--
R/Derv2.R | 7 ++-
R/hierarch.bs.R | 2 -
R/knots.start.R | 55 ++++++++++++++++++-------------
R/my.IC.r | 6 +--
R/new.weights.R | 1
R/pencopula.R | 83 ++++++++++++++++++++++++++++++-----------------
R/plot.pencopula.R | 13 +++++--
R/print.pencopula.R | 5 +-
R/start.valgrid.R | 2 -
man/pencopula-package.Rd | 4 +-
11 files changed, 113 insertions(+), 73 deletions(-)
Title: Dendrochronology Program Library in R
Diff between dplR versions 1.4.2 dated 2011-06-04 and 1.4.3 dated 2011-07-02
Description: This package contains functions for performing tree-ring
analyses, IO, and graphics.
Author: Andy Bunn with major additions from Mikko Korpela and other
significant contributions from Franco Biondi and Christian Zang
Maintainer: Andy Bunn
ChangeLog | 156 ++++++++++++++++-
DESCRIPTION | 11 -
R/bai.in.R | 2
R/bai.out.R | 3
R/ccf.series.rwl.R | 14 -
R/cms.R | 133 ++++++--------
R/combine.rwl.R | 6
R/corr.rwl.seg.R | 43 ++--
R/corr.series.seg.R | 15 -
R/crn.plot.R | 9
R/detrend.series.R | 25 +-
R/ffcsaps.R | 6
R/glk.R | 2
R/helpers.R | 3
R/i.detrend.R | 6
R/i.detrend.series.R | 9
R/rcs.R | 23 +-
R/read.compact.R | 8
R/read.crn.R | 32 ++-
R/read.fh.R | 8
R/read.rwl.R | 15 +
R/read.tridas.R | 427 ++++++++++++++++++++++++-----------------------
R/read.tucson.R | 27 +-
R/rwi.stats.R | 2
R/rwi.stats.running.R | 6
R/rwl.stats.R | 3
R/sea.R | 19 +-
R/seg.plot.R | 4
R/series.rwl.plot.R | 43 ++--
R/skel.plot.R | 6
R/spag.plot.R | 6
R/wavelet.plot.R | 10 -
R/write.compact.R | 5
R/write.crn.R | 16 -
R/write.tridas.R | 57 ++----
R/write.tucson.R | 12 -
inst/po |only
man/ccf.series.rwl.Rd | 12 -
man/corr.rwl.seg.Rd | 6
man/crn.plot.Rd | 24 +-
man/detrend.Rd | 23 +-
man/glk.Rd | 3
man/po.to.wc.Rd | 5
man/rwi.stats.running.Rd | 68 ++++---
man/series.rwl.plot.Rd | 2
man/skel.plot.Rd | 46 ++---
man/tbrm.Rd | 16 -
man/wavelet.plot.Rd | 4
po |only
src/dplR.h |only
src/rcompact.c | 88 ++++-----
51 files changed, 834 insertions(+), 635 deletions(-)
Title: Deductive correction of simple rounding, typing and sign errors
Diff between deducorrect versions 0.9-6 dated 2011-06-29 and 1.0-0 dated 2011-07-02
Description: Deductive correction of simple rounding, typing and sign
errors
Author: Mark van der Loo, Edwin de Jonge, and Sander Scholtus
Maintainer: Mark van der Loo
DESCRIPTION | 6 +++---
NEWS | 3 +++
inst/doc/deducorrect-vignette.Snw | 4 ++--
inst/doc/deducorrect-vignette.pdf |binary
inst/doc/deducorrect-vignette.tex | 8 ++++----
inst/doc/index.html | 3 +++
inst/doc/vanderlooDeJongeScholtus2011.pdf |only
7 files changed, 15 insertions(+), 9 deletions(-)
Title: Extension of data.frame for fast indexing, fast ordered joins
and fast grouping.
Diff between data.table versions 1.6.1 dated 2011-06-29 and 1.6.2 dated 2011-07-02
Description: Enhanced data.frame. Fast indexing, fast ordered joins and
fast grouping in a short and flexible syntax. i and j may be
expressions of column names directly, for faster development.
Example: X[Y] is a fast join for large data.
Author: M Dowle, T Short, S Lianoglou
Maintainer: M Dowle
DESCRIPTION | 6
NEWS | 20
R/IDateTime.R | 1
R/data.table.R | 3
R/setkey.R | 19
inst/doc/datatable-faq.pdf | 905 ++++++++++++++++++++---------------------
inst/doc/datatable-intro.pdf |binary
inst/doc/datatable-timings.pdf |binary
inst/tests/tests.R | 11
man/data.table.Rd | 7
man/setkey.Rd | 3
src/dogroups.c | 7
src/readfile.c | 2
src/reorder.c |only
14 files changed, 507 insertions(+), 477 deletions(-)
Title: Plot a correlogram
Diff between corrgram versions 0.1 dated 2006-12-01 and 1.0 dated 2011-07-02
Description: Calculates correlation of variables and displays the
results graphically.
Author: Kevin Wright
Maintainer: Kevin Wright
corrgram-0.1/corrgram/data/auto.R |only
corrgram-0.1/corrgram/data/baseball.R |only
corrgram-1.0/corrgram/DESCRIPTION | 26 -
corrgram-1.0/corrgram/NEWS |only
corrgram-1.0/corrgram/R/corrgram.r | 572 ++++++++++++++------------------
corrgram-1.0/corrgram/data/auto.rda |only
corrgram-1.0/corrgram/data/baseball.rda |only
corrgram-1.0/corrgram/data/vote.rda |only
corrgram-1.0/corrgram/man/auto.Rd | 4
corrgram-1.0/corrgram/man/baseball.Rd | 15
corrgram-1.0/corrgram/man/corrgram.Rd | 39 +-
corrgram-1.0/corrgram/man/vote.Rd |only
corrgram-1.0/corrgram/tests |only
13 files changed, 298 insertions(+), 358 deletions(-)
Title: Visualization and Imputation of Missing Values
Diff between VIM versions 2.0.1 dated 2011-05-05 and 2.0.2 dated 2011-07-02
Description: This package introduces new tools for the visualization of
missing values in R, which can be used for exploring the data
and the structure of the missing values. Depending on this
structure, they may help to identify the mechanism generating
the missings. A graphical user interface allows an easy
handling of the implemented plot methods.
Author: Matthias Templ, Andreas Alfons, Alexander Kowarik
Maintainer: Matthias Templ
VIM-2.0.1/VIM/inst/tklibs/BWidget-1.9.0/images/Thumbs.db |only
VIM-2.0.2/VIM/DESCRIPTION | 8
VIM-2.0.2/VIM/R/aggr.R | 516 ++++++++-------
VIM-2.0.2/VIM/inst/doc/.directory |only
VIM-2.0.2/VIM/inst/doc/Sweave.sty |only
VIM-2.0.2/VIM/inst/doc/VIM-EU-SILC.pdf |binary
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VIM-2.0.2/VIM/man/aggr.Rd | 53 +
VIM-2.0.2/VIM/src/gowerD.cpp | 2
34 files changed, 318 insertions(+), 261 deletions(-)
Title: Record Linkage in R
Diff between RecordLinkage versions 0.3-2 dated 2011-05-11 and 0.3-3 dated 2011-07-02
Description: Provides functions for linking and deduplicating data
sets. Methods based on a stochastical approach are implemented
as well as classification algorithms from the machine learning
domain.
Author: Andreas Borg
Maintainer: Murat Sariyar
RecordLinkage-0.3-2/RecordLinkage/R/firstlib.r |only
RecordLinkage-0.3-3/RecordLinkage/DESCRIPTION | 20 +--
RecordLinkage-0.3-3/RecordLinkage/NAMESPACE |only
RecordLinkage-0.3-3/RecordLinkage/NEWS | 12 ++
RecordLinkage-0.3-3/RecordLinkage/R/classify.r | 30 +++++
RecordLinkage-0.3-3/RecordLinkage/R/compare.r | 33 +++---
RecordLinkage-0.3-3/RecordLinkage/R/em-methods.r | 12 +-
RecordLinkage-0.3-3/RecordLinkage/R/epilink-methods.r | 54 +++++-----
RecordLinkage-0.3-3/RecordLinkage/R/getPairs-methods.r | 14 +-
RecordLinkage-0.3-3/RecordLinkage/R/onAttach.r |only
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RecordLinkage-0.3-3/RecordLinkage/inst/doc/BigData.pdf |binary
RecordLinkage-0.3-3/RecordLinkage/inst/doc/EVT.pdf |binary
RecordLinkage-0.3-3/RecordLinkage/inst/doc/Supervised.pdf |binary
RecordLinkage-0.3-3/RecordLinkage/inst/doc/WeightBased.pdf |binary
RecordLinkage-0.3-3/RecordLinkage/inst/doc/WeightBased.rnw | 4
RecordLinkage-0.3-3/RecordLinkage/inst/unitTests/data1.fsWeights.txt |only
RecordLinkage-0.3-3/RecordLinkage/inst/unitTests/runit.getPairs.r | 9 +
RecordLinkage-0.3-3/RecordLinkage/inst/unitTests/runit.stochastic.r |only
RecordLinkage-0.3-3/RecordLinkage/inst/unitTests/runit.various.r | 13 ++
RecordLinkage-0.3-3/RecordLinkage/man/stochastic.rd |only
RecordLinkage-0.3-3/RecordLinkage/man/trainSupv.Rd | 17 +++
23 files changed, 155 insertions(+), 69 deletions(-)
Title: R Code for MARK Analysis
Diff between RMark versions 2.0.5 dated 2011-06-30 and 2.0.6 dated 2011-07-02
Description: This package provides an interface to the software package
MARK developed by Gary White. MARK is freely available at
(http://www.phidot.org/software/mark/download/) but is not open
source.
Author: Jeff Laake
Maintainer: Jeff Laake
DESCRIPTION | 8 ++++----
man/IELogitNormalMR.Rd | 3 ++-
man/LogitNormalMR.Rd | 4 ++--
man/PoissonMR.Rd | 4 ++--
man/Poisson_twoMR.Rd | 3 ++-
man/Whatsnew.Rd | 5 +++++
6 files changed, 17 insertions(+), 10 deletions(-)
Title: Automates the creation of new statistical analysis projects.
Diff between ProjectTemplate versions 0.1-3 dated 2010-10-03 and 0.3-3 dated 2011-07-02
More information about ProjectTemplate at CRAN
Description: ProjectTemplate provides functions to automatically build
a directory structure for a new R project. Using this
structure, ProjectTemplate automates data loading,
preprocessing, library importing and unit testing.
Author: John Myles White
Maintainer: John Myles White
ProjectTemplate-0.1-3/ProjectTemplate/R/show.updates.R |only
ProjectTemplate-0.1-3/ProjectTemplate/data_examples/a.csv |only
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ProjectTemplate-0.3-3/ProjectTemplate/.gitignore | 2
ProjectTemplate-0.3-3/ProjectTemplate/ChangeLog | 41 ++
ProjectTemplate-0.3-3/ProjectTemplate/DESCRIPTION | 24 -
ProjectTemplate-0.3-3/ProjectTemplate/NAMESPACE |only
ProjectTemplate-0.3-3/ProjectTemplate/R/arff.reader.R |only
ProjectTemplate-0.3-3/ProjectTemplate/R/cache.R |only
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ProjectTemplate-0.3-3/ProjectTemplate/R/clean.variable.name.R |only
ProjectTemplate-0.3-3/ProjectTemplate/R/create.project.R | 33 +
ProjectTemplate-0.3-3/ProjectTemplate/R/csv.reader.R |only
ProjectTemplate-0.3-3/ProjectTemplate/R/dbf.reader.R |only
ProjectTemplate-0.3-3/ProjectTemplate/R/epiinfo.reader.R |only
ProjectTemplate-0.3-3/ProjectTemplate/R/extensions.dispatch.table.R |only
ProjectTemplate-0.3-3/ProjectTemplate/R/load.project.R | 176 +++++++++-
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ProjectTemplate-0.3-3/ProjectTemplate/README.markdown | 88 -----
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81 files changed, 343 insertions(+), 127 deletions(-)
Permanent link
Title: Pharmacometric tools for data preparation, modeling, simulation,
and reporting
Diff between MIfuns versions 4.3.2 dated 2011-06-05 and 4.3.7 dated 2011-07-02
Description: Pharmacometric tools for common data preparation tasks,
stratified bootstrap resampling of data sets, NONMEM control
stream creation/editing, NONMEM model execution, creation of
standard and user-defined diagnostic plots, execution and
summary of bootstrap and predictive check results,
implementation of simulations from posterior parameter
distributions, reporting of output tables and creation of a
detailed analysis log.
Author: Metrum Institute (http://metruminstitute.org): Bill Knebel,
Leonid Gibianski, Tim Bergsma
Maintainer: Tim Bergsma
MIfuns-4.3.2/MIfuns/inst/sample/script/.Rhistory |only
MIfuns-4.3.2/MIfuns/inst/sample/script/wikitab.Rnw |only
MIfuns-4.3.2/MIfuns/wikimath |only
MIfuns-4.3.7/MIfuns/DESCRIPTION | 8
MIfuns-4.3.7/MIfuns/NAMESPACE | 2
MIfuns-4.3.7/MIfuns/R/latex.R |only
MIfuns-4.3.7/MIfuns/R/omegacor.R | 14
MIfuns-4.3.7/MIfuns/R/parens.R |only
MIfuns-4.3.7/MIfuns/R/runCommand.R | 3
MIfuns-4.3.7/MIfuns/R/wikimath.R | 6
MIfuns-4.3.7/MIfuns/inst/sample/nonmem/1005.boot/CombRunLog.csv | 1200
MIfuns-4.3.7/MIfuns/inst/sample/nonmem/1005.boot/log.csv |23400 ++++++----
MIfuns-4.3.7/MIfuns/inst/sample/nonmem/1005/1005.ctl | 9
MIfuns-4.3.7/MIfuns/inst/sample/nonmem/1005/1005.lst | 35
MIfuns-4.3.7/MIfuns/inst/sample/nonmem/1005/diagnostics.pdf | 2448 -
MIfuns-4.3.7/MIfuns/inst/sample/nonmem/1105/1105.ctl | 7
MIfuns-4.3.7/MIfuns/inst/sample/nonmem/1105/1105.lst | 21
MIfuns-4.3.7/MIfuns/inst/sample/nonmem/ctl/1005.ctl | 9
MIfuns-4.3.7/MIfuns/inst/sample/nonmem/ctl/1105.ctl | 9
MIfuns-4.3.7/MIfuns/inst/sample/script/assemble.pdf |binary
MIfuns-4.3.7/MIfuns/inst/sample/script/assemble.tex | 4
MIfuns-4.3.7/MIfuns/inst/sample/script/covplot-covplot.pdf |only
MIfuns-4.3.7/MIfuns/inst/sample/script/covplot.Rnw |only
MIfuns-4.3.7/MIfuns/inst/sample/script/covplot.pdf |only
MIfuns-4.3.7/MIfuns/inst/sample/script/covplot.tex |only
MIfuns-4.3.7/MIfuns/inst/sample/script/model-qq.pdf | 4
MIfuns-4.3.7/MIfuns/inst/sample/script/model-qqdensity.pdf | 2990 -
MIfuns-4.3.7/MIfuns/inst/sample/script/model-qqdetail.pdf | 4
MIfuns-4.3.7/MIfuns/inst/sample/script/model.Rnw | 215
MIfuns-4.3.7/MIfuns/inst/sample/script/model.pdf |binary
MIfuns-4.3.7/MIfuns/inst/sample/script/model.tex | 615
MIfuns-4.3.7/MIfuns/inst/sample/script/parameters.Rnw |only
MIfuns-4.3.7/MIfuns/inst/sample/script/parameters.pdf |only
MIfuns-4.3.7/MIfuns/inst/sample/script/parameters.tex |only
MIfuns-4.3.7/MIfuns/inst/sample/script/settings.sty | 2
MIfuns-4.3.7/MIfuns/inst/tabular |only
MIfuns-4.3.7/MIfuns/inst/wikimath |only
MIfuns-4.3.7/MIfuns/man/MIfuns-package.Rd | 4
MIfuns-4.3.7/MIfuns/man/NONR.Rd | 2
MIfuns-4.3.7/MIfuns/man/align.decimal.Rd |only
MIfuns-4.3.7/MIfuns/man/breaks.Rd |only
MIfuns-4.3.7/MIfuns/man/colname.Rd | 30
MIfuns-4.3.7/MIfuns/man/command.Rd |only
MIfuns-4.3.7/MIfuns/man/helpList.Rd | 22
MIfuns-4.3.7/MIfuns/man/helpReport.Rd | 3
MIfuns-4.3.7/MIfuns/man/is.alpha.Rd |only
MIfuns-4.3.7/MIfuns/man/is.latex.token.Rd |only
MIfuns-4.3.7/MIfuns/man/is.one.nonalpha.Rd |only
MIfuns-4.3.7/MIfuns/man/latex.args.Rd |only
MIfuns-4.3.7/MIfuns/man/latex.options.Rd |only
MIfuns-4.3.7/MIfuns/man/ltable.Rd |only
MIfuns-4.3.7/MIfuns/man/ltable.data.frame.Rd |only
MIfuns-4.3.7/MIfuns/man/nm.pl.Rd | 20
MIfuns-4.3.7/MIfuns/man/omegacor.Rd | 23
MIfuns-4.3.7/MIfuns/man/parens.Rd |only
MIfuns-4.3.7/MIfuns/man/partab.Rd | 30
MIfuns-4.3.7/MIfuns/man/row2tabular.Rd |only
MIfuns-4.3.7/MIfuns/man/spaces.Rd |only
MIfuns-4.3.7/MIfuns/man/tabular.Rd |only
MIfuns-4.3.7/MIfuns/man/tabular.data.frame.Rd |only
MIfuns-4.3.7/MIfuns/man/tabularformat.Rd |only
MIfuns-4.3.7/MIfuns/man/tagvalue.Rd |only
MIfuns-4.3.7/MIfuns/man/wikiparse.Rd | 25
MIfuns-4.3.7/MIfuns/man/wrap.Rd |only
64 files changed, 18779 insertions(+), 12385 deletions(-)
Title: Joint Modelling of Longitudinal and Survival Data
Diff between JM versions 0.8-3 dated 2011-04-23 and 0.8-4 dated 2011-07-02
Description: Shared parameter models for the joint modelling of
longitudinal and time-to-event data.
Author: Dimitris Rizopoulos
Maintainer: Dimitris Rizopoulos
DESCRIPTION | 8 +-
R/MI.fixed.times.R | 18 +++--
R/MI.random.times.R | 14 ++--
R/S.b.R | 2
R/anova.jointModel.R | 146 ++++++++++++++++++++++++++++++++++---------
R/jointModel.R | 9 ++
R/log.posterior.b.R | 2
R/log.posterior.b2.R |only
R/piecewisePHGH.fit.R | 5 +
R/plot.jointModel.R | 8 +-
R/plot.survfitJM.R | 59 ++++++++++++-----
R/posterior.b.R | 38 ++++++++++-
R/print.aov.jointModel.R | 50 +++++++++++---
R/print.summary.jointModel.R | 2
R/ranef.jointModel.R | 31 +++++----
R/residuals.jointModel.R | 4 +
R/survfitJM.R | 5 -
R/wald.strata.R | 2
data/prothros.rda |binary
inst/NEWS | 23 +++++-
man/JM.Rd | 4 -
man/anova.Rd | 14 +++-
man/jointModel.Rd | 10 +-
man/plot-survfitJM.Rd | 7 +-
man/ranef.Rd | 16 +---
25 files changed, 355 insertions(+), 122 deletions(-)
Title: Extension to ggplot2.
Diff between GGally versions 0.2.3 dated 2011-01-20 and 0.3.0 dated 2011-07-02
Description: Package contains templates for different plots to be
combined into a plot matrix, as well as a parallel coordinate
plot function.
Author: Barret Schloerke
Maintainer: Jason Crowley
GGally-0.2.3/GGally/Testing/aes.r |only
GGally-0.3.0/GGally/DESCRIPTION | 29
GGally-0.3.0/GGally/NAMESPACE | 2
GGally-0.3.0/GGally/R/find-combo.r | 148 -
GGally-0.3.0/GGally/R/gg-plots.r | 1853 ++++++++++----------
GGally-0.3.0/GGally/R/ggpairs.r | 1833 ++++++++++---------
GGally-0.3.0/GGally/R/ggparcoord.R |only
GGally-0.3.0/GGally/TODO | 24
GGally-0.3.0/GGally/Testing/gparis.r | 1490 ++++++++--------
GGally-0.3.0/GGally/Testing/plotmatrix2.r | 70
GGally-0.3.0/GGally/Testing/violin.r | 30
GGally-0.3.0/GGally/load.r | 18
GGally-0.3.0/GGally/man/addAndOverwriteAes.Rd | 36
GGally-0.3.0/GGally/man/eval_ggpair.Rd | 18
GGally-0.3.0/GGally/man/find_plot_type.Rd | 22
GGally-0.3.0/GGally/man/get.VarTypes.Rd |only
GGally-0.3.0/GGally/man/getPlot.Rd | 26
GGally-0.3.0/GGally/man/get_plot_type.Rd | 20
GGally-0.3.0/GGally/man/ggally_barDiag.Rd | 28
GGally-0.3.0/GGally/man/ggally_blank.Rd | 20
GGally-0.3.0/GGally/man/ggally_box.Rd | 28
GGally-0.3.0/GGally/man/ggally_cor.Rd | 32
GGally-0.3.0/GGally/man/ggally_density.Rd | 32
GGally-0.3.0/GGally/man/ggally_densityDiag.Rd | 28
GGally-0.3.0/GGally/man/ggally_denstrip.Rd | 28
GGally-0.3.0/GGally/man/ggally_diagAxis.Rd |only
GGally-0.3.0/GGally/man/ggally_dot.Rd | 30
GGally-0.3.0/GGally/man/ggally_dotAndBox.Rd | 28
GGally-0.3.0/GGally/man/ggally_facetbar.Rd | 26
GGally-0.3.0/GGally/man/ggally_facetdensity.Rd | 26
GGally-0.3.0/GGally/man/ggally_facetdensitystrip.Rd | 28
GGally-0.3.0/GGally/man/ggally_facethist.Rd | 26
GGally-0.3.0/GGally/man/ggally_points.Rd | 28
GGally-0.3.0/GGally/man/ggally_ratio.Rd | 26
GGally-0.3.0/GGally/man/ggally_smooth.Rd | 28
GGally-0.3.0/GGally/man/ggally_text.Rd | 36
GGally-0.3.0/GGally/man/ggfluctuation2.Rd | 36
GGally-0.3.0/GGally/man/ggpairs.Rd | 318 +--
GGally-0.3.0/GGally/man/ggparcoord.Rd |only
GGally-0.3.0/GGally/man/is_blank_plot.Rd | 18
GGally-0.3.0/GGally/man/make_ggpair_text.Rd | 22
GGally-0.3.0/GGally/man/mapping_color_fill.Rd | 14
GGally-0.3.0/GGally/man/plot_types.Rd | 18
GGally-0.3.0/GGally/man/print.ggpairs.Rd | 22
GGally-0.3.0/GGally/man/putPlot.Rd | 38
GGally-0.3.0/GGally/man/scagOrder.Rd |only
GGally-0.3.0/GGally/man/singleClassOrder.Rd |only
GGally-0.3.0/GGally/man/skewness.Rd |only
GGally-0.3.0/GGally/man/vplayout.Rd | 20
49 files changed, 3384 insertions(+), 3219 deletions(-)