Title: Dendrochronology Program Library in R
Diff between dplR versions 1.4.3 dated 2011-07-02 and 1.4.4 dated 2011-07-04
Description: This package contains functions for performing tree-ring
analyses, IO, and graphics.
Author: Andy Bunn with major additions from Mikko Korpela and other
significant contributions from Franco Biondi and Christian Zang
Maintainer: Andy Bunn
ChangeLog | 107 ++++++++
DESCRIPTION | 12
R/bai.in.R | 9
R/bai.out.R | 4
R/ccf.series.rwl.R | 55 ++--
R/chron.R | 10
R/cms.R | 13 -
R/corr.series.seg.R | 60 ++--
R/crn.plot.R | 5
R/detrend.R | 16 -
R/detrend.series.R | 49 +--
R/exactmean.R | 4
R/ffcsaps.R | 87 +++---
R/gini.coef.R | 4
R/glk.R | 37 +-
R/hanning.R | 11
R/helpers.R | 20 -
R/i.detrend.R | 4
R/i.detrend.series.R | 12
R/morlet.R | 68 ++---
R/normalize.xdate.R | 8
R/rcs.R | 16 -
R/read.rwl.R | 3
R/read.tridas.R | 230 +++++++++--------
R/read.tucson.R | 5
R/rwi.stats.R | 25 +
R/rwi.stats.running.R | 85 +++---
R/rwl.stats.R | 7
R/sea.R | 26 +-
R/sens1.R | 4
R/sens2.R | 4
R/series.rwl.plot.R | 51 ++-
R/simpleXML.R | 224 ++++++++---------
R/skel.plot.R | 68 ++---
R/spag.plot.R | 18 -
R/tbrm.R | 4
R/tridas.vocabulary.R | 3
R/wavelet.plot.R | 18 -
R/write.compact.R | 4
R/write.crn.R | 52 ++--
R/write.rwl.R | 3
R/write.tridas.R | 502 ++++++++++++++++++++-------------------
R/write.tucson.R | 49 +--
data/ca533.rda |binary
data/cana157.rda |binary
data/co021.rda |binary
data/gp.d2pith.rda |binary
data/gp.dbh.rda |binary
data/gp.po.rda |binary
data/gp.rwl.rda |binary
inst/po/fi/LC_MESSAGES/R-dplR.mo |binary
man/ccf.series.rwl.Rd | 18 -
man/chron.Rd | 12
man/corr.series.seg.Rd | 17 -
man/detrend.Rd | 4
man/detrend.series.Rd | 6
man/glk.Rd | 11
man/hanning.Rd | 20 -
man/i.detrend.Rd | 4
man/i.detrend.series.Rd | 6
man/morlet.Rd | 13 -
po/R-dplR.pot | 7
po/R-fi.po | 16 -
63 files changed, 1156 insertions(+), 974 deletions(-)
Title: Flux rate calculation from dynamic closed chamber measurements
Diff between flux versions 0.1-2 dated 2011-04-11 and 0.1-3 dated 2011-07-04
Description: Functions for the calculation of greenhouse gas flux rates
from closed chamber concentration measurements. The package
follows a modular concept: Fluxes can be calculated in just two
simple steps or in several steps if more control in details is
wanted. Additionaly plot and preparation functions are
provided.
Author: Gerald Jurasinski, Franziska Koebsch
Maintainer: Gerald Jurasinski
DESCRIPTION | 8 ++++----
R/CO2.control.R |only
R/flux.R | 29 ++++++++++++++++++++++++++++-
R/flux.calib.R | 2 +-
R/print.fluss.R |only
inst/ChangeLog | 11 +++++++++++
man/CO2.control.Rd |only
man/flux-internal.Rd |only
man/flux.Rd | 44 +++++++++++++++++++++++++++++++++++++-------
9 files changed, 81 insertions(+), 13 deletions(-)
Title: Detection of disease-associated SNP interactions in case-parent
trio data
Diff between trio versions 1.2.0 dated 2011-04-24 and 1.2.1 dated 2011-07-04
Description: Testing SNPs and SNP interactions with a genotypic TDT.
This package furthermore contains functions for computing
pairwise values of LD measures and for identifying LD blocks,
as well as functions for setting up matched case pseudo-control
genotype data for case-parent trios in order to run trio logic
regreesion, to impute missing genotypes in trios, or to
simulate case-parent trios with disease risk dependent on SNP
interaction.
Author: Holger Schwender, Qing Li
Maintainer: Holger Schwender
DESCRIPTION | 8 ++++----
R/colGxE.R | 32 ++++++++++++++------------------
R/colTDTsam.R | 4 ++--
R/fastTDT.R | 29 ++++++++++++++++++++++-------
R/tdt.R | 22 ++++++++--------------
inst/doc/trio.pdf |binary
man/colGxE.Rd | 1 +
man/tdt.Rd | 1 +
8 files changed, 52 insertions(+), 45 deletions(-)
Title: Pretty Heatmaps
Diff between pheatmap versions 0.5 dated 2011-06-15 and 0.5.1 dated 2011-07-04
Description: The package for drawing pretty heatmaps in R. The ordinary
heatmap function in R has several drawbacks, when it comes to
producing publication quality heatmaps. It is hard to produce
pictures with consistent text, cell and overall sizes and
shapes. The function pheatmap tries to alleviate the problems
by offering more fine grained control over heatmap dimensions
and appearance.
Author: Raivo Kolde
Maintainer: Raivo Kolde
DESCRIPTION | 6 +++---
R/pheatmap.r | 54 +++++++++++++++++++++++++++++++++++-------------------
man/pheatmap.Rd | 9 ++++++---
run_roxygen.r |only
4 files changed, 44 insertions(+), 25 deletions(-)
Title: A graphical approach to sequentially rejective multiple test
procedures
Diff between gMCP versions 0.6-5 dated 2011-05-26 and 0.6-6 dated 2011-07-04
Description: This package provides functions and a graphical user
interface for graphical described multiple test procedures.
Author: Kornelius Rohmeyer, Florian Klinglmueller
Maintainer: Kornelius Rohmeyer
DESCRIPTION | 8
INSTALL | 39 +-
NAMESPACE | 2
NEWS | 21 +
R/closure.R | 4
R/convertFromOldClassDefinition.R |only
R/gACT-internal.R | 42 ++
R/gMCP.R | 54 +--
R/generatePvals.R |only
R/graphMCP.R | 27 +
R/matrix2graph.R | 18 -
R/misc.R | 12
R/onLoad.R | 21 -
R/subVariables.R |only
TODO | 7
inst/doc/AQuickStart.Rnw | 1
inst/doc/AQuickStart.pdf |binary
inst/doc/Makefile | 2
inst/doc/gMCP.Rnw | 1
inst/doc/gMCP.pdf |binary
inst/doc/gMCP/AQuickStart-fake.Rnw | 1
inst/doc/gMCP/AQuickStart.Rnw | 4
inst/doc/gMCP/gMCP-fake.Rnw | 1
inst/doc/gMCP/gMCP.Rnw | 168 +++++++---
inst/doc/gMCP/parametric-fake.Rnw | 1
inst/doc/parametric.Rnw | 1
inst/doc/parametric.pdf |binary
inst/java-src/org/af/gMCP/config/Configuration.java | 8
inst/java-src/org/af/gMCP/config/GeneralConfig.java | 47 ++
inst/java-src/org/af/gMCP/config/VersionComparator.java | 76 +++-
inst/java-src/org/af/gMCP/gui/CreateGraphGUI.java | 67 ++-
inst/java-src/org/af/gMCP/gui/JSplitPaneBugWorkAround.java |only
inst/java-src/org/af/gMCP/gui/MenuBarMGraph.java | 2
inst/java-src/org/af/gMCP/gui/RControl.java | 11
inst/java-src/org/af/gMCP/gui/dialogs/DialogConfIntEstVar.java | 1
inst/java-src/org/af/gMCP/gui/dialogs/GraphSendToArchiveDialog.java | 4
inst/java-src/org/af/gMCP/gui/dialogs/NewVersionDialog.java |only
inst/java-src/org/af/gMCP/gui/graph/Edge.java | 102 ++----
inst/java-src/org/af/gMCP/gui/graph/GraphView.java | 10
inst/java-src/org/af/gMCP/gui/graph/NetList.java | 1
inst/java-src/org/af/gMCP/gui/graph/PView.java | 19 -
inst/java-src/org/af/gMCP/tests/FormatTest.java | 1
inst/java/gsrmtp.jar |binary
inst/unitTests/runit.fastgMCP.R | 11
inst/unitTests/runit.misc.R | 10
man/gMCP.Rd | 8
man/generatePvals.Rd |only
src/gMCP.c | 25 +
48 files changed, 559 insertions(+), 279 deletions(-)
Title: Species distribution modeling
Diff between dismo versions 0.6-12 dated 2011-06-15 and 0.7-1 dated 2011-07-04
Description: Functions for species distribution modeling, that is,
predicting entire geographic distributions form occurences at
specific sites.
Author: Robert J. Hijmans, Steven Phillips, John Leathwick and Jane
Elith
Maintainer:
ChangeLog | 4 ++++
DESCRIPTION | 17 ++++++++---------
NAMESPACE | 1 -
R/Mahalanobis.R | 2 +-
R/Mahalanobis.predict.R | 5 +++--
R/maxent.R | 19 +++++++++++++++++--
R/maxent.predict.R | 7 ++++---
R/onLoad.R | 3 +--
data/Anguilla_grids.RData |binary
data/Anguilla_test.RData |binary
data/Anguilla_train.RData |binary
data/ECOcrops.RData |binary
data/acaule.RData |binary
inst/doc/brt.pdf |binary
inst/doc/sdm.pdf |binary
man/mahal.Rd | 15 ++++++++++++++-
man/maxent.Rd | 4 ++--
17 files changed, 54 insertions(+), 23 deletions(-)
Title: Deductive correction of simple rounding, typing and sign errors
Diff between deducorrect versions 1.0-0 dated 2011-07-02 and 1.0-1 dated 2011-07-04
Description: Deductive correction of simple rounding, typing and sign
errors
Author: Mark van der Loo, Edwin de Jonge, and Sander Scholtus
Maintainer: Mark van der Loo
deducorrect-1.0-0/deducorrect/inst/doc/deducorrect-vignette.ps |only
deducorrect-1.0-0/deducorrect/inst/doc/deducorrect-vignette.tex |only
deducorrect-1.0-1/deducorrect/DESCRIPTION | 6 +++---
deducorrect-1.0-1/deducorrect/NEWS | 3 +++
deducorrect-1.0-1/deducorrect/R/correctSigns.R | 8 ++++----
deducorrect-1.0-1/deducorrect/inst/doc/buildVignette.bash | 4 +---
deducorrect-1.0-1/deducorrect/inst/doc/deducorrect-vignette.Snw.edited |only
deducorrect-1.0-1/deducorrect/inst/doc/deducorrect-vignette.dvi |binary
deducorrect-1.0-1/deducorrect/inst/doc/deducorrect-vignette.pdf |binary
deducorrect-1.0-1/deducorrect/inst/doc/sweave.r | 1 +
deducorrect-1.0-1/deducorrect/inst/tests/testCorrectSigns.R |only
11 files changed, 12 insertions(+), 10 deletions(-)
Title: Statistical Matching
Diff between StatMatch versions 1.0.1 dated 2011-03-12 and 1.0.2 dated 2011-07-04
Description: This package provides some R functions to perform
statistical matching between two data sources sharing a number
of common variables. Some functions can also be used to impute
missing values in data sets through hot deck imputation
methods. Methods to perform statistical atching when dealing
with data from complex sample surveys are available too.
Author: Marcello D'Orazio
Maintainer: Marcello D'Orazio
StatMatch-1.0.1/StatMatch/R/maximum.dist.r |only
StatMatch-1.0.1/StatMatch/chm |only
StatMatch-1.0.2/StatMatch/DESCRIPTION | 14 +++----
StatMatch-1.0.2/StatMatch/NEWS | 8 ++++
StatMatch-1.0.2/StatMatch/R/NND.hotdeck.R | 40 ++++++++++----------
StatMatch-1.0.2/StatMatch/R/RANDwNND.hotdeck.R | 23 +++++++----
StatMatch-1.0.2/StatMatch/R/mahalanobis.dist.R |only
StatMatch-1.0.2/StatMatch/R/maximum.dist.R |only
StatMatch-1.0.2/StatMatch/R/mixed.mtc.R | 24 +++++++-----
StatMatch-1.0.2/StatMatch/man/Fbwidths.by.x.Rd | 6 +--
StatMatch-1.0.2/StatMatch/man/Frechet.bounds.cat.Rd | 12 +++---
StatMatch-1.0.2/StatMatch/man/NND.hotdeck.Rd | 21 +++++-----
StatMatch-1.0.2/StatMatch/man/RANDwNND.hotdeck.Rd | 18 ++++-----
StatMatch-1.0.2/StatMatch/man/comb.samples.Rd | 34 ++++++++---------
StatMatch-1.0.2/StatMatch/man/create.fused.Rd | 10 ++---
StatMatch-1.0.2/StatMatch/man/fact2dummy.Rd | 2 -
StatMatch-1.0.2/StatMatch/man/gower.dist.Rd | 2 -
StatMatch-1.0.2/StatMatch/man/harmonize.x.Rd | 13 +++---
StatMatch-1.0.2/StatMatch/man/mahalanobis.dist.Rd |only
StatMatch-1.0.2/StatMatch/man/maximum.dist.Rd | 8 ++--
StatMatch-1.0.2/StatMatch/man/mixed.mtc.Rd | 34 ++++++++---------
StatMatch-1.0.2/StatMatch/man/rankNND.hotdeck.Rd | 10 ++---
22 files changed, 146 insertions(+), 133 deletions(-)
Title: Automates the creation of new statistical analysis projects.
Diff between ProjectTemplate versions 0.3-3 dated 2011-07-02 and 0.3-4 dated 2011-07-04
More information about ProjectTemplate at CRAN
Description: ProjectTemplate provides functions to automatically build
a directory structure for a new R project. Using this
structure, ProjectTemplate automates data loading,
preprocessing, library importing and unit testing.
Author: John Myles White
Maintainer: John Myles White
ProjectTemplate-0.3-3/ProjectTemplate/R/run.tests.R |only
ProjectTemplate-0.3-3/ProjectTemplate/TODO |only
ProjectTemplate-0.3-3/ProjectTemplate/man/run.tests.Rd |only
ProjectTemplate-0.3-3/ProjectTemplate/website/letters.csv |only
ProjectTemplate-0.3-3/ProjectTemplate/workflows.dot |only
ProjectTemplate-0.3-4/ProjectTemplate/.gitignore | 2
ProjectTemplate-0.3-4/ProjectTemplate/ChangeLog | 11
ProjectTemplate-0.3-4/ProjectTemplate/DESCRIPTION | 15
ProjectTemplate-0.3-4/ProjectTemplate/NAMESPACE | 4
ProjectTemplate-0.3-4/ProjectTemplate/R/create.project.R | 2
ProjectTemplate-0.3-4/ProjectTemplate/R/db.reader.R |only
ProjectTemplate-0.3-4/ProjectTemplate/R/extensions.dispatch.table.R | 4
ProjectTemplate-0.3-4/ProjectTemplate/R/file.reader.R |only
ProjectTemplate-0.3-4/ProjectTemplate/R/load.project.R | 30 -
ProjectTemplate-0.3-4/ProjectTemplate/R/show.project.R |only
ProjectTemplate-0.3-4/ProjectTemplate/R/sql.reader.R | 114 ++--
ProjectTemplate-0.3-4/ProjectTemplate/R/stub.tests.R |only
ProjectTemplate-0.3-4/ProjectTemplate/R/test.project.R |only
ProjectTemplate-0.3-4/ProjectTemplate/R/url.reader.R | 2
ProjectTemplate-0.3-4/ProjectTemplate/TODO.markdown |only
ProjectTemplate-0.3-4/ProjectTemplate/data_examples/1972.dta |only
ProjectTemplate-0.3-4/ProjectTemplate/data_examples/example_34.mat |only
ProjectTemplate-0.3-4/ProjectTemplate/ideas/dewar/conventions.r | 21
ProjectTemplate-0.3-4/ProjectTemplate/ideas/workflow1.dot |only
ProjectTemplate-0.3-4/ProjectTemplate/ideas/workflow2.dot |only
ProjectTemplate-0.3-4/ProjectTemplate/ideas/workflow3.dot |only
ProjectTemplate-0.3-4/ProjectTemplate/inst/defaults/full/config/global.dcf | 2
ProjectTemplate-0.3-4/ProjectTemplate/inst/defaults/minimal/config/global.dcf | 2
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/example_03.csv.zip |binary
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/example_07.tsv.zip |binary
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/example_11.wsv.zip |binary
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/example_18.tab.zip |binary
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/example_22.txt.zip |binary
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/example_29.db |only
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/example_30.db |only
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/example_31.db |only
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/example_32.arff |only
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/example_33.file |only
ProjectTemplate-0.3-4/ProjectTemplate/inst/example_data/sqlite3_examples.sql |only
ProjectTemplate-0.3-4/ProjectTemplate/man/ProjectTemplate-package.Rd | 4
ProjectTemplate-0.3-4/ProjectTemplate/man/create.project.Rd | 2
ProjectTemplate-0.3-4/ProjectTemplate/man/show.project.Rd |only
ProjectTemplate-0.3-4/ProjectTemplate/man/stub.tests.Rd |only
ProjectTemplate-0.3-4/ProjectTemplate/man/test.project.Rd |only
ProjectTemplate-0.3-4/ProjectTemplate/tests/1.R | 6
ProjectTemplate-0.3-4/ProjectTemplate/tests/3.R | 260 ++++++----
ProjectTemplate-0.3-4/ProjectTemplate/tests/4.R |only
ProjectTemplate-0.3-4/ProjectTemplate/website/README.html |only
ProjectTemplate-0.3-4/ProjectTemplate/website/README.markdown |only
ProjectTemplate-0.3-4/ProjectTemplate/website/TODO.html |only
ProjectTemplate-0.3-4/ProjectTemplate/website/TODO.markdown |only
ProjectTemplate-0.3-4/ProjectTemplate/website/architecture.html | 2
ProjectTemplate-0.3-4/ProjectTemplate/website/architecture.markdown | 2
ProjectTemplate-0.3-4/ProjectTemplate/website/changes.html | 20
ProjectTemplate-0.3-4/ProjectTemplate/website/changes.markdown | 16
ProjectTemplate-0.3-4/ProjectTemplate/website/configuring.html | 2
ProjectTemplate-0.3-4/ProjectTemplate/website/configuring.markdown | 2
ProjectTemplate-0.3-4/ProjectTemplate/website/create_letters_data_set.rb | 2
ProjectTemplate-0.3-4/ProjectTemplate/website/file_formats.html | 15
ProjectTemplate-0.3-4/ProjectTemplate/website/file_formats.markdown | 13
ProjectTemplate-0.3-4/ProjectTemplate/website/getting_started.html | 12
ProjectTemplate-0.3-4/ProjectTemplate/website/getting_started.markdown | 12
ProjectTemplate-0.3-4/ProjectTemplate/website/index.html | 2
ProjectTemplate-0.3-4/ProjectTemplate/website/index.markdown | 2
ProjectTemplate-0.3-4/ProjectTemplate/website/installing.html | 2
ProjectTemplate-0.3-4/ProjectTemplate/website/installing.markdown | 2
ProjectTemplate-0.3-4/ProjectTemplate/website/letters.csv.bz2 |only
ProjectTemplate-0.3-4/ProjectTemplate/website/updating.html | 6
ProjectTemplate-0.3-4/ProjectTemplate/website/updating.markdown | 3
ProjectTemplate-0.3-4/ProjectTemplate/website/upload.sh | 7
70 files changed, 381 insertions(+), 222 deletions(-)
Permanent link
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.6-33 dated 2010-12-16 and 0.7-1 dated 2011-07-04
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
rgdal binaries for OSX are available from the CRAN (extras)
repository.
Author: Timothy H. Keitt
Maintainer: Roger Bivand
ChangeLog | 80
DESCRIPTION | 8
R/AAA.R | 1
R/SGDF2RGB.R | 4
R/gdal.R | 30
R/ogr.R | 6
R/ogr_sp.R | 18
R/ogr_write.R | 2
R/project.R | 6
R/sgdf_gdal.R | 2
R/sp_gdal.R | 24
R/subs.R | 6
configure | 5064 +++++++++++++++++++++++++++-----------------------
configure.in | 56
inst/ChangeLog | 80
man/readGDAL.Rd | 3
man/readOGR.Rd | 3
src/OGR_write.cpp | 53
src/gdal-bindings.cpp | 336 ++-
src/local_stubs.c | 1
src/ogr_geom.cpp | 48
src/ogr_proj.cpp | 19
src/ogrdrivers.cpp | 5
src/ogrsource.cpp | 52
src/projectit.cpp | 48
src/rgdal.h | 17
tests |only
27 files changed, 3636 insertions(+), 2336 deletions(-)
Title: Tools for mapping multiple complex traits
Diff between qtlmt versions 0.1-1 dated 2011-06-27 and 0.1-2 dated 2011-07-04
Description: This software provides tools for simultaneous analysis of
multiple traits in a backcross (BC) or recombinant inbred lines
(RIL) population. It can be used to select an optimal subset of
traits for multiple-trait mapping, analyze multiple traits via
the SURE model and perform multiple-trait composite
multiple-interval mapping.
Author: Riyan Cheng
Maintainer: Riyan Cheng
ChangeLog | 4
DESCRIPTION | 8
NAMESPACE | 13 +
R/misc.R | 61 +++---
R/mstep.R |only
R/mtcmim.R | 207 +++++++++++-----------
R/sure.R | 492 +++++++++++-------------------------------------------
R/varSel.R | 107 ++++++-----
man/gv2mpos.Rd | 16 -
man/mAdd1.Rd |only
man/mStep.Rd |only
man/mlogLik.Rd |only
man/mtcmim.Rd | 23 +-
man/mtcmimStep.Rd | 34 +--
man/sureEps.Rd | 13 -
man/sureEst.Rd | 23 --
man/sureStep.Rd | 42 ++--
man/varGroups.Rd | 13 -
man/varSelect.Rd | 11 -
man/varStep.Rd | 19 --
man/varT2.Rd | 11 -
21 files changed, 408 insertions(+), 689 deletions(-)
Title: Analysis with the Constant Elasticity of Scale (CES) function
Diff between micEconCES versions 0.9-2 dated 2011-06-05 and 0.9-4 dated 2011-07-04
Description: Tools for economic analysis and economic modelling with a
Constant Elasticity of Scale (CES) function
Author: Arne Henningsen and Geraldine Henningsen
Maintainer: Arne Henningsen
micEconCES-0.9-2/micEconCES/inst/doc/Kemfert |only
micEconCES-0.9-4/micEconCES/DESCRIPTION | 10
micEconCES-0.9-4/micEconCES/inst/Kemfert98Nest1GridLm.RData |only
micEconCES-0.9-4/micEconCES/inst/doc/CES-deriv.tex | 22
micEconCES-0.9-4/micEconCES/inst/doc/CES.Rnw | 396 ++++++------
micEconCES-0.9-4/micEconCES/inst/doc/CES.pdf |binary
micEconCES-0.9-4/micEconCES/inst/doc/kemfert98.R |only
micEconCES-0.9-4/micEconCES/inst/doc/references.bib | 74 +-
8 files changed, 292 insertions(+), 210 deletions(-)
Title: Hierarchical Generalized Linear Models
Diff between hglm versions 1.2-1 dated 2011-06-24 and 1.2-2 dated 2011-07-04
Description: The hglm package is used to fit hierarchical generalized
linear models. It can be used for linear mixed models and
generalized linear mixed models with random effects for a
variety of links and a variety of distributions for both the
outcomes and the random effects. Fixed effects can also be
fitted in the dispersion part of the mean model.
Author: Moudud Alam, Xia Shen, Lars Ronnegard
Maintainer: Lars Ronnegard
hglm-1.2-1/hglm/R/GAMMA.R |only
hglm-1.2-2/hglm/DESCRIPTION | 10 ++++----
hglm-1.2-2/hglm/NAMESPACE | 2 -
hglm-1.2-2/hglm/R/hglm.R | 2 -
hglm-1.2-2/hglm/R/hglm.default.R | 41 ++++++++++++++++++++++++++++++++++-
hglm-1.2-2/hglm/inst/CITATION |only
hglm-1.2-2/hglm/inst/doc/hglm.Rnw | 2 -
hglm-1.2-2/hglm/inst/doc/hglm.pdf |binary
hglm-1.2-2/hglm/inst/doc/hglmdoc.pdf |binary
hglm-1.2-2/hglm/man/Beta.Rd |only
hglm-1.2-2/hglm/man/hglm-package.Rd | 8 +++---
11 files changed, 52 insertions(+), 13 deletions(-)
Title: Search Pubmed, Make bibliographic content analyzable
Diff between RISmed versions 1.2.1 dated 2011-04-08 and 1.2.3 dated 2011-07-04
Description: Pubmed search through R, creating analyzable object from
Pubmed results and RIS files. This package replaces ris.
Author: S. A. Kovalchik
Maintainer: S. A. Kovalchik
DESCRIPTION | 8 ++++----
R/cite.R | 1 +
2 files changed, 5 insertions(+), 4 deletions(-)