Title: R Fortunes
Diff between fortunes versions 1.4-1 dated 2011-03-30 and 1.4-2 dated 2011-07-05
Description: R Fortunes
Author: Achim Zeileis (R code) and the R community (fortunes).
Contributions (fortunes and/or code) by Torsten Hothorn, Peter
Dalgaard, Uwe Ligges, Kevin Wright, Martin Maechler, Kjetil
Brinchmann Halvorsen, Kurt Hornik, Duncan Murdoch, Andy Bunn,
Ray Brownrigg, Roger Bivand, Spencer Graves, Jim Lemon,
Christian Kleiber, David L. Reiner, Berton Gunter, Roger
Koenker, Charles Berry, Marc Schwartz, Michael Dewey, Ben
Bolker, Peter Dunn, Sarah Goslee, Simon Blomberg, Bill
Venables, Roland Rau, Thomas Petzoldt, Rolf Turner, Mark Leeds,
Emmanuel Charpentier, Chris Evans, Paolo Sonego, Peter Ehlers,
Detlef Steuer, Tal Galili, Greg Snow, Brian D. Ripley, Michael
Sumner, David Winsemius, Liviu Andronic, Brian Diggs, Matthieu
Stigler, Michael Friendly, Dirk Eddelbuettel.
Maintainer: Achim Zeileis
DESCRIPTION | 11 +++++------
inst/doc/fortunes.pdf |binary
inst/fortunes/fortunes.csv | 12 +++++++++++-
3 files changed, 16 insertions(+), 7 deletions(-)
Title: GUI implementing Bayesian working memory models
Diff between WMCapacity versions 0.9.6.4 dated 2011-06-29 and 0.9.6.5 dated 2011-07-05
Description: A GUI R implementation of hierarchical Bayesian models of
working memory, used for analyzing change detection data.
Author: R. D. Morey
Maintainer: R. D. Morey
DESCRIPTION | 8 ++---
R/analysistab.R | 15 ++++++---
R/modeltab.R | 74 +++++++++++++++++++++++++++++++++----------------
R/resultstab.R | 2 -
data/VisualArray.RData |binary
5 files changed, 66 insertions(+), 33 deletions(-)
Title: Segmented relationships in regression models
Diff between segmented versions 0.2-8.1 dated 2011-06-20 and 0.2-8.2 dated 2011-07-05
Description: Given a (generalized) linear model, segmented `updates'
the model by adding one or more segmented relationships.
Several variables with multiple breakpoints are allowed.
Author: Vito M.R. Muggeo
Maintainer: Vito M.R. Muggeo
DESCRIPTION | 8 ++++----
NEWS | 12 ++++++++++--
R/confint.segmented.R | 2 +-
R/intercept.r | 2 +-
R/segmented.glm.R | 2 ++
R/segmented.lm.R | 2 ++
man/intercept.Rd | 11 ++++++++---
man/segmented-package.Rd | 4 ++--
8 files changed, 30 insertions(+), 13 deletions(-)
Title: Shrinkage t Statistic and CAT Score
Diff between st versions 1.1.5 dated 2011-06-28 and 1.1.6 dated 2011-07-05
Description: This package implements the "shrinkage t" statistic
introduced in Opgen-Rhein and Strimmer (2007) and a shrinkage
estimate of the "correlation-adjusted t-score" (CAT score)
described in Zuber and Strimmer (2009). It also offers a
convenient interface to a number of other regularized
t-statistics commonly employed in high-dimensional case-control
studies.
Author: Rainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 8 ++++----
NEWS | 5 +++++
R/studentt.R | 6 +++---
data/choedata.rda |binary
4 files changed, 12 insertions(+), 7 deletions(-)
Title: simexaft
Diff between simexaft versions 1.0.4 dated 2011-06-01 and 1.0.5 dated 2011-07-05
Description: Implement of the Simulation-Extrapolation (SIMEX)
algorithm for the accelerated failure time (AFT) with
covariates subject to measurement error.
Author: Juan Xiong
Maintainer: Juan Xiong
DESCRIPTION | 8 ++++----
R/plotsimexaft.R | 9 +++++++--
man/simexaft-package.Rd | 4 ++--
3 files changed, 13 insertions(+), 8 deletions(-)
Title: Geographic analysis and modeling with raster data
Diff between raster versions 1.8-38 dated 2011-06-18 and 1.8-39 dated 2011-07-05
Description: Reading, writing, manipulating, analyzing and modeling of
gridded spatial data. The package implements basic and
high-level functions, as well as map algebra. Processing of
very large files is supported.
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
ChangeLog | 4 ++++
DESCRIPTION | 13 ++++++-------
R/Geary.R | 2 +-
R/coverBrick.R | 4 ++--
R/kml.R | 23 ++++++++++++++---------
R/levelplot.R | 7 ++++---
R/moran.R | 2 +-
R/plot.R | 6 ++----
R/setCV.R | 2 +-
R/stack.R | 11 ++++++-----
R/subset.R | 30 +++++++++++++++++++++++++-----
inst/doc/Raster.pdf |binary
inst/doc/functions.pdf |binary
inst/doc/rasterfile.pdf |binary
man/KML.Rd | 4 ++--
man/spplot.Rd | 9 ++-------
16 files changed, 70 insertions(+), 47 deletions(-)
Title: GRAPH Interaction from pathway Topological Environment
Diff between graphite versions 1.0 dated 2011-05-30 and 1.1 dated 2011-07-05
Description: Graph objects from pathway topology derived from NCI,
KEGG, Biocarta and Reactome databases.
Author: Gabriele Sales
Maintainer: Gabriele Sales
graphite-1.0/graphite/R/pathway.graph.R |only
graphite-1.0/graphite/R/pathway.names.R |only
graphite-1.0/graphite/data/datalist |only
graphite-1.0/graphite/man/biocarta.pathways.Rd |only
graphite-1.0/graphite/man/kegg.pathways.Rd |only
graphite-1.0/graphite/man/nci.pathways.Rd |only
graphite-1.0/graphite/man/pathway.graph.Rd |only
graphite-1.0/graphite/man/pathway.names.Rd |only
graphite-1.0/graphite/man/reactome.pathways.Rd |only
graphite-1.1/graphite/DESCRIPTION | 11 ++++++-----
graphite-1.1/graphite/NAMESPACE | 12 +++++++++++-
graphite-1.1/graphite/R/conversion.R |only
graphite-1.1/graphite/R/cytoscapePlot.R |only
graphite-1.1/graphite/R/degraph.R |only
graphite-1.1/graphite/R/graph.R |only
graphite-1.1/graphite/R/pathway.R |only
graphite-1.1/graphite/R/spia.R |only
graphite-1.1/graphite/R/tables.R |only
graphite-1.1/graphite/R/topologygsa.R |only
graphite-1.1/graphite/R/utils.R |only
graphite-1.1/graphite/data/pathways.RData |binary
graphite-1.1/graphite/inst |only
graphite-1.1/graphite/man/biocarta.Rd |only
graphite-1.1/graphite/man/convertIdentifiers.Rd |only
graphite-1.1/graphite/man/cytoscapePlot.Rd |only
graphite-1.1/graphite/man/kegg.Rd |only
graphite-1.1/graphite/man/nci.Rd |only
graphite-1.1/graphite/man/pathway-class.Rd |only
graphite-1.1/graphite/man/pathwayGraph.Rd |only
graphite-1.1/graphite/man/prepareSPIA.Rd |only
graphite-1.1/graphite/man/reactome.Rd |only
graphite-1.1/graphite/man/runDEGraph.Rd |only
graphite-1.1/graphite/man/runSPIA.Rd |only
graphite-1.1/graphite/man/topologyGSA.Rd |only
34 files changed, 17 insertions(+), 6 deletions(-)
Title: Regularization for semiparametric additive hazards regression
Diff between ahaz versions 1.0 dated 2011-05-17 and 1.1 dated 2011-07-05
Description: Computationally efficient procedures for regularized
estimation with the semiparametric additive hazards regression
model.
Author: Anders Gorst-Rasmussen
Maintainer: Anders Gorst-Rasmussen
ahaz-1.0/ahaz/R/ahaz.mse.R |only
ahaz-1.0/ahaz/R/ahazpartial.R |only
ahaz-1.0/ahaz/R/coef.ahaz.R |only
ahaz-1.0/ahaz/R/coef.ahazpen.R |only
ahaz-1.1/ahaz/DESCRIPTION | 11
ahaz-1.1/ahaz/NAMESPACE | 5
ahaz-1.1/ahaz/R/ahaz.R | 106 --
ahaz-1.1/ahaz/R/ahaz.adjust.R | 24
ahaz-1.1/ahaz/R/ahaz.partial.R | 96 --
ahaz-1.1/ahaz/R/ahaz.tune.control.R | 1
ahaz-1.1/ahaz/R/ahazisis.R | 44 -
ahaz-1.1/ahaz/R/ahazpen.R | 306 ++++----
ahaz-1.1/ahaz/R/ahazpen.fit.control.R | 2
ahaz-1.1/ahaz/R/ahazpen.pen.control.R | 29
ahaz-1.1/ahaz/R/helpers.R | 263 ++++---
ahaz-1.1/ahaz/R/plot.ahazpen.R | 57 -
ahaz-1.1/ahaz/R/plot.cumahaz.R | 11
ahaz-1.1/ahaz/R/plot.tune.ahazpen.R | 64 -
ahaz-1.1/ahaz/R/predict.ahaz.R | 36
ahaz-1.1/ahaz/R/predict.ahazpen.R | 58 -
ahaz-1.1/ahaz/R/predict.tune.ahazpen.R |only
ahaz-1.1/ahaz/R/print.ahaz.R | 2
ahaz-1.1/ahaz/R/print.ahazpen.R | 1
ahaz-1.1/ahaz/R/print.tune.ahazpen.R | 10
ahaz-1.1/ahaz/R/summary.ahaz.R | 6
ahaz-1.1/ahaz/R/tune.ahazpen.R | 71 +
ahaz-1.1/ahaz/man/ahaz.Rd | 12
ahaz-1.1/ahaz/man/ahaz.adjust.Rd | 14
ahaz-1.1/ahaz/man/ahaz.partial.Rd | 12
ahaz-1.1/ahaz/man/ahaz.tune.control.Rd | 23
ahaz-1.1/ahaz/man/ahazisis.Rd | 23
ahaz-1.1/ahaz/man/ahazpen.Rd | 89 +-
ahaz-1.1/ahaz/man/ahazpen.fit.control.Rd | 11
ahaz-1.1/ahaz/man/ahazpen.pen.control.Rd | 41 -
ahaz-1.1/ahaz/man/plot.ahazpen.Rd | 20
ahaz-1.1/ahaz/man/plot.tune.ahazpen.Rd | 6
ahaz-1.1/ahaz/man/predict.ahaz.Rd | 15
ahaz-1.1/ahaz/man/predict.ahazpen.Rd | 37
ahaz-1.1/ahaz/man/predict.tune.ahazpen.Rd |only
ahaz-1.1/ahaz/man/summary.ahaz.Rd | 4
ahaz-1.1/ahaz/man/tune.ahazpen.Rd | 23
ahaz-1.1/ahaz/src/Makevars |only
ahaz-1.1/ahaz/src/ahaz.c | 1127 ++++++++++++++++++++----------
43 files changed, 1522 insertions(+), 1138 deletions(-)
Title: Modelling Spatial Extremes
Diff between SpatialExtremes versions 1.8-0 dated 2011-03-23 and 1.8-1 dated 2011-07-05
More information about SpatialExtremes at CRAN
Description: This package proposes several approaches for spatial
extremes modelling.
Author: Mathieu Ribatet
Maintainer: Mathieu Ribatet
SpatialExtremes-1.8-0/SpatialExtremes/src/nsgeomgauss.c |only
SpatialExtremes-1.8-1/SpatialExtremes/ChangeLog | 74 +
SpatialExtremes-1.8-1/SpatialExtremes/DESCRIPTION | 10
SpatialExtremes-1.8-1/SpatialExtremes/NEWS | 24
SpatialExtremes-1.8-1/SpatialExtremes/R/conditionalSim.R | 4
SpatialExtremes-1.8-1/SpatialExtremes/R/copula.R | 329 ++++---
SpatialExtremes-1.8-1/SpatialExtremes/R/covariance.R | 60 +
SpatialExtremes-1.8-1/SpatialExtremes/R/extremalt.R | 16
SpatialExtremes-1.8-1/SpatialExtremes/R/fitcovmat.R | 46 -
SpatialExtremes-1.8-1/SpatialExtremes/R/geomgauss.R | 16
SpatialExtremes-1.8-1/SpatialExtremes/R/kriging.R | 2
SpatialExtremes-1.8-1/SpatialExtremes/R/madogram.R | 4
SpatialExtremes-1.8-1/SpatialExtremes/R/methods.R | 76 -
SpatialExtremes-1.8-1/SpatialExtremes/R/modelChecking.R | 117 ++
SpatialExtremes-1.8-1/SpatialExtremes/R/plots.R | 14
SpatialExtremes-1.8-1/SpatialExtremes/R/predict.R | 84 +
SpatialExtremes-1.8-1/SpatialExtremes/R/schlather.R | 16
SpatialExtremes-1.8-1/SpatialExtremes/R/schlatherind.R | 16
SpatialExtremes-1.8-1/SpatialExtremes/R/simmaxstab.R | 42
SpatialExtremes-1.8-1/SpatialExtremes/R/standardErrors.R | 18
SpatialExtremes-1.8-1/SpatialExtremes/R/starting.values.R | 10
SpatialExtremes-1.8-1/SpatialExtremes/inst/doc/Figures/Schlather2Sim.png |binary
SpatialExtremes-1.8-1/SpatialExtremes/inst/doc/Figures/Smith2Sim.png |binary
SpatialExtremes-1.8-1/SpatialExtremes/inst/doc/Figures/rmaxstabSmith.png |binary
SpatialExtremes-1.8-1/SpatialExtremes/inst/doc/Figures/tbm.png |binary
SpatialExtremes-1.8-1/SpatialExtremes/inst/doc/SpatialExtremesGuide.Rnw | 97 +-
SpatialExtremes-1.8-1/SpatialExtremes/inst/doc/SpatialExtremesGuide.pdf |binary
SpatialExtremes-1.8-1/SpatialExtremes/inst/doc/layout.sty | 1
SpatialExtremes-1.8-1/SpatialExtremes/man/TIC.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/condmap.Rd | 4
SpatialExtremes-1.8-1/SpatialExtremes/man/condrgp.Rd | 6
SpatialExtremes-1.8-1/SpatialExtremes/man/covariance.Rd | 14
SpatialExtremes-1.8-1/SpatialExtremes/man/extcoeff.Rd | 6
SpatialExtremes-1.8-1/SpatialExtremes/man/fitcopula.Rd | 13
SpatialExtremes-1.8-1/SpatialExtremes/man/fitcovariance.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/fitmaxstab.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/fitspatgev.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/fmadogram.Rd | 4
SpatialExtremes-1.8-1/SpatialExtremes/man/lmadogram.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/logLik.maxstab.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/madogram.Rd | 4
SpatialExtremes-1.8-1/SpatialExtremes/man/map.Rd | 6
SpatialExtremes-1.8-1/SpatialExtremes/man/plot.copula.Rd |only
SpatialExtremes-1.8-1/SpatialExtremes/man/plot.maxstab.Rd | 4
SpatialExtremes-1.8-1/SpatialExtremes/man/predict.copula.Rd |only
SpatialExtremes-1.8-1/SpatialExtremes/man/predict.maxstab.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/predict.spatgev.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/print.copula.Rd | 13
SpatialExtremes-1.8-1/SpatialExtremes/man/print.maxstab.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/print.spatgev.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/profile2d.maxstab.Rd | 2
SpatialExtremes-1.8-1/SpatialExtremes/man/rcopula.Rd |only
SpatialExtremes-1.8-1/SpatialExtremes/man/simmaxstab.Rd | 10
SpatialExtremes-1.8-1/SpatialExtremes/src/Makevars | 3
SpatialExtremes-1.8-1/SpatialExtremes/src/brownResnick.c | 3
SpatialExtremes-1.8-1/SpatialExtremes/src/circulant.c | 13
SpatialExtremes-1.8-1/SpatialExtremes/src/copula.c | 94 +-
SpatialExtremes-1.8-1/SpatialExtremes/src/covariance.c | 155 +--
SpatialExtremes-1.8-1/SpatialExtremes/src/direct.c | 10
SpatialExtremes-1.8-1/SpatialExtremes/src/extremalt.c | 35
SpatialExtremes-1.8-1/SpatialExtremes/src/fitcovmat.c | 148 +--
SpatialExtremes-1.8-1/SpatialExtremes/src/geomgauss.c | 19
SpatialExtremes-1.8-1/SpatialExtremes/src/gpdproc.c |only
SpatialExtremes-1.8-1/SpatialExtremes/src/header.h | 86 -
SpatialExtremes-1.8-1/SpatialExtremes/src/kriging.c | 14
SpatialExtremes-1.8-1/SpatialExtremes/src/latentVariable.c | 52 -
SpatialExtremes-1.8-1/SpatialExtremes/src/maxLinear.c | 5
SpatialExtremes-1.8-1/SpatialExtremes/src/pairwiselik.c | 448 +++++-----
SpatialExtremes-1.8-1/SpatialExtremes/src/schlather.c | 35
SpatialExtremes-1.8-1/SpatialExtremes/src/schlatherind.c | 35
SpatialExtremes-1.8-1/SpatialExtremes/src/simextremalt.c | 41
SpatialExtremes-1.8-1/SpatialExtremes/src/simgeometric.c | 44
SpatialExtremes-1.8-1/SpatialExtremes/src/simschlather.c | 48 -
SpatialExtremes-1.8-1/SpatialExtremes/src/smith.c | 3
SpatialExtremes-1.8-1/SpatialExtremes/src/smith3d.c | 3
SpatialExtremes-1.8-1/SpatialExtremes/src/standardErrors.c | 117 +-
SpatialExtremes-1.8-1/SpatialExtremes/src/turningbands.c | 3
SpatialExtremes-1.8-1/SpatialExtremes/src/utils.c | 61 -
78 files changed, 1551 insertions(+), 1106 deletions(-)
Permanent link
More information about RcmdrPlugin.coin at CRAN
Permanent link
Title: Software for Bayesian Inference
Diff between LaplacesDemon versions 11.06.27 dated 2011-06-27 and 11.07.05 dated 2011-07-05
Description: Laplace's Demon is software for Bayesian inference.
Author: Byron Hall
Maintainer: Byron Hall
CHANGELOG | 7
DESCRIPTION | 8
NAMESPACE | 1
R/Geweke.Diagnostic.R | 2
R/LaplacesDemon.R | 4
R/distributions.R | 31
R/predict.demonoid.R | 8
R/summary.demonoid.ppc.R | 3
R/summary.laplace.ppc.R | 2
inst/CITATION | 2
inst/doc/BayesianInference.Stex | 136
inst/doc/BayesianInference.pdf |binary
inst/doc/Examples.Stex | 476 +-
inst/doc/Examples.pdf | 8763 ++++++++++++++++++++++------------------
inst/doc/LaplacesDemon.Stex | 29
inst/doc/LaplacesDemon.pdf |binary
inst/doc/References.bib | 2
man/dist.Categorical.Rd |only
man/predict.demonoid.Rd | 11
19 files changed, 5358 insertions(+), 4127 deletions(-)