Title: Quantile Regression
Diff between quantreg versions 4.69 dated 2011-06-22 and 4.71 dated 2011-07-24
Description: Quantile regression and related methods.
Author: Roger Koenker
Maintainer: Roger Koenker
DESCRIPTION | 6 +--
NAMESPACE |only
R/boot.R | 11 +++++
R/quantreg.R | 96 +++++++++++++++++++++++++++++++++----------------
inst/Changelog | 23 +++++++++++
inst/doc/engelcoef.pdf |binary
inst/doc/rq.pdf |binary
man/boot.rq.Rd | 8 +++-
man/rqs.fit.Rd |only
src/crq.f | 2 -
src/ratfor/rqs.r |only
src/rqs.f |only
12 files changed, 109 insertions(+), 37 deletions(-)
Title: Chronological objects which can handle dates and times
Diff between chron versions 2.3-39 dated 2010-12-07 and 2.3-40 dated 2011-07-24
Description: Chronological objects which can handle dates and times
Author: S original by David James
Maintainer: Kurt Hornik
chron-2.3-39/chron/COPYING |only
chron-2.3-40/chron/ChangeLog | 8 ++++++++
chron-2.3-40/chron/DESCRIPTION | 8 ++++----
chron-2.3-40/chron/README | 7 ++-----
4 files changed, 14 insertions(+), 9 deletions(-)
More information about opencpu.encode at CRAN
Permanent link
Title: General Smoothing Splines
Diff between gss versions 1.1-7 dated 2011-01-13 and 2.0-0 dated 2011-07-24
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu
Maintainer: Chong Gu
gss-1.1-7/gss/R/drkpk.R |only
gss-1.1-7/gss/R/grkpk.R |only
gss-1.1-7/gss/R/grkpk0.R |only
gss-1.1-7/gss/R/rkpk.R |only
gss-1.1-7/gss/R/rkpk0.R |only
gss-2.0-0/gss/ChangeLog | 18 +
gss-2.0-0/gss/DESCRIPTION | 8
gss-2.0-0/gss/INDEX | 41 ++
gss-2.0-0/gss/R/cdsscden.R |only
gss-2.0-0/gss/R/cdssden.R | 8
gss-2.0-0/gss/R/dsscden.R |only
gss-2.0-0/gss/R/family.R | 13
gss-2.0-0/gss/R/family.cv.R | 56 +--
gss-2.0-0/gss/R/family.proj.R | 77 +++--
gss-2.0-0/gss/R/family.surv.R | 4
gss-2.0-0/gss/R/gssanova.R | 450 ++++++++++++++++++++++++++++++--
gss-2.0-0/gss/R/gssanova0.R | 238 ++++++++++++++++
gss-2.0-0/gss/R/gssanova1.R |only
gss-2.0-0/gss/R/hzdrate.sshzd.R | 45 ++-
gss-2.0-0/gss/R/mkfun.poly.R | 51 +++
gss-2.0-0/gss/R/mkfun.tp.R | 14
gss-2.0-0/gss/R/mkterm.R | 38 ++
gss-2.0-0/gss/R/predict.ssanova.R | 36 +-
gss-2.0-0/gss/R/predict.ssanova0.R | 36 ++
gss-2.0-0/gss/R/predict.sscox.R |only
gss-2.0-0/gss/R/predict.ssllrm.R | 31 --
gss-2.0-0/gss/R/print.R | 46 ++-
gss-2.0-0/gss/R/project.gssanova.R | 28 +
gss-2.0-0/gss/R/project.ssanova.R | 16 -
gss-2.0-0/gss/R/project.ssanova9.R |only
gss-2.0-0/gss/R/project.sscden.R |only
gss-2.0-0/gss/R/project.sscden1.R |only
gss-2.0-0/gss/R/project.sscox.R |only
gss-2.0-0/gss/R/project.ssden.R | 50 ++-
gss-2.0-0/gss/R/project.sshzd.R | 16 -
gss-2.0-0/gss/R/project.sshzd1.R | 14
gss-2.0-0/gss/R/project.ssllrm.R | 32 --
gss-2.0-0/gss/R/ssanova.R | 439 ++++++++++++++++++++++++++++++-
gss-2.0-0/gss/R/ssanova0.R | 206 +++++++++++++-
gss-2.0-0/gss/R/ssanova9.R |only
gss-2.0-0/gss/R/sscden.R |only
gss-2.0-0/gss/R/sscden1.R |only
gss-2.0-0/gss/R/sscox.R |only
gss-2.0-0/gss/R/ssden.R | 218 +++++++++++++++
gss-2.0-0/gss/R/sshzd.R | 75 +++--
gss-2.0-0/gss/R/sshzd1.R | 62 +++-
gss-2.0-0/gss/R/ssllrm.R | 68 +---
gss-2.0-0/gss/R/summary.gssanova.R | 1
gss-2.0-0/gss/R/summary.ssanova.R | 15 -
gss-2.0-0/gss/R/summary.ssanova0.R | 7
gss-2.0-0/gss/R/summary.ssanova9.R |only
gss-2.0-0/gss/data/ColoCan.R |only
gss-2.0-0/gss/data/LakeAcidity.R | 35 +-
gss-2.0-0/gss/data/clim.R |only
gss-2.0-0/gss/data/penny.R |only
gss-2.0-0/gss/man/ColoCan.Rd |only
gss-2.0-0/gss/man/LakeAcid.Rd | 22 -
gss-2.0-0/gss/man/cdsscden.Rd |only
gss-2.0-0/gss/man/cdssden.Rd | 9
gss-2.0-0/gss/man/clim.Rd |only
gss-2.0-0/gss/man/drkpk.Rd | 18 +
gss-2.0-0/gss/man/dsscden.Rd |only
gss-2.0-0/gss/man/family.Rd | 11
gss-2.0-0/gss/man/gssanova.Rd | 11
gss-2.0-0/gss/man/gssanova0.Rd | 73 +++--
gss-2.0-0/gss/man/hzdrate.sshzd.Rd | 4
gss-2.0-0/gss/man/mkcov.Rd |only
gss-2.0-0/gss/man/mkfun.poly.Rd | 4
gss-2.0-0/gss/man/penny.Rd |only
gss-2.0-0/gss/man/predict.ssanova.Rd | 19 -
gss-2.0-0/gss/man/predict.sscox.Rd |only
gss-2.0-0/gss/man/predict.ssllrm.Rd | 6
gss-2.0-0/gss/man/print.Rd | 4
gss-2.0-0/gss/man/project.Rd | 15 -
gss-2.0-0/gss/man/rkpk.Rd | 11
gss-2.0-0/gss/man/ssanova.Rd | 4
gss-2.0-0/gss/man/ssanova0.Rd | 4
gss-2.0-0/gss/man/ssanova9.Rd |only
gss-2.0-0/gss/man/sscden.Rd |only
gss-2.0-0/gss/man/sscox.Rd |only
gss-2.0-0/gss/man/ssden.Rd | 33 ++
gss-2.0-0/gss/man/sshzd.Rd | 13
gss-2.0-0/gss/man/ssllrm.Rd | 12
gss-2.0-0/gss/man/summary.ssanova.Rd | 2
gss-2.0-0/gss/src/cdennewton.f |only
gss-2.0-0/gss/src/cdennewton10.f |only
gss-2.0-0/gss/src/dnewton.f | 366 +++++++++++++++-----------
gss-2.0-0/gss/src/drkl.f | 329 +++++++++++++++--------
gss-2.0-0/gss/src/hzdaux.f | 84 +++++
gss-2.0-0/gss/src/hzdnewton.f | 17 -
gss-2.0-0/gss/src/hzdnewton10.f | 14
gss-2.0-0/gss/src/llrmnewton.f | 16 -
gss-2.0-0/gss/src/ratfor/cdennewton.r |only
gss-2.0-0/gss/src/ratfor/cdennewton10.r |only
gss-2.0-0/gss/src/ratfor/dnewton.r | 147 ++++++----
gss-2.0-0/gss/src/ratfor/drkl.r | 185 ++++++++-----
gss-2.0-0/gss/src/ratfor/hzdaux.r | 55 +++
gss-2.0-0/gss/src/ratfor/hzdnewton.r | 11
gss-2.0-0/gss/src/ratfor/hzdnewton10.r | 11
gss-2.0-0/gss/src/ratfor/llrmnewton.r | 11
100 files changed, 3126 insertions(+), 887 deletions(-)
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Diff between spatstat versions 1.22-3 dated 2011-06-17 and 1.23-0 dated 2011-07-24
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Also
supports three-dimensional point patterns, and space-time point
patterns in any number of dimensions. Contains over 1000
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, pixel images and
tessellations. Exploratory methods include K-functions, nearest
neighbour distance and empty space statistics, Fry plots, pair
correlation function, kernel smoothed intensity, relative risk
estimation with cross-validated bandwidth selection, mark
correlation functions, segregation indices, mark dependence
diagnostics etc. Point process models can be fitted to point
pattern data using functions ppm, kppm, slrm similar to glm.
Models may include dependence on covariates, interpoint
interaction, cluster formation and dependence on marks. Fitted
models can be simulated automatically. Also provides facilities
for formal inference (such as chi-squared tests) and model
diagnostics (including simulation envelopes, residuals,
residual plots and Q-Q plots).
Author: Adrian Baddeley
Maintainer: Adrian Baddeley
spatstat-1.22-3/spatstat/man/internal.Rd |only
spatstat-1.23-0/spatstat/DESCRIPTION | 32 ++--
spatstat-1.23-0/spatstat/NAMESPACE |only
spatstat-1.23-0/spatstat/NEWS | 158 ++++++++++++++++++++++
spatstat-1.23-0/spatstat/R/First.R | 28 ++-
spatstat-1.23-0/spatstat/R/Gcom.R |only
spatstat-1.23-0/spatstat/R/Gmulti.R | 17 +-
spatstat-1.23-0/spatstat/R/Gres.R |only
spatstat-1.23-0/spatstat/R/Jmulti.R | 17 +-
spatstat-1.23-0/spatstat/R/Kcom.R |only
spatstat-1.23-0/spatstat/R/Kinhom.R | 27 +++
spatstat-1.23-0/spatstat/R/Kmulti.R | 32 ++--
spatstat-1.23-0/spatstat/R/Kmulti.inhom.R | 28 ++-
spatstat-1.23-0/spatstat/R/Kres.R |only
spatstat-1.23-0/spatstat/R/alltypes.R | 10 -
spatstat-1.23-0/spatstat/R/compareFit.R |only
spatstat-1.23-0/spatstat/R/density.ppp.R | 6
spatstat-1.23-0/spatstat/R/envelopelpp.R |only
spatstat-1.23-0/spatstat/R/fii.R | 5
spatstat-1.23-0/spatstat/R/fv.R | 133 +++++++++++++-----
spatstat-1.23-0/spatstat/R/interact.R | 11 +
spatstat-1.23-0/spatstat/R/linearK.R | 127 +++++++++++++++--
spatstat-1.23-0/spatstat/R/lineardisc.R |only
spatstat-1.23-0/spatstat/R/linearpcf.R |only
spatstat-1.23-0/spatstat/R/linequad.R |only
spatstat-1.23-0/spatstat/R/linim.R |only
spatstat-1.23-0/spatstat/R/lppm.R |only
spatstat-1.23-0/spatstat/R/mincontrast.R | 6
spatstat-1.23-0/spatstat/R/mpl.R | 11 -
spatstat-1.23-0/spatstat/R/options.R | 79 +++++++----
spatstat-1.23-0/spatstat/R/pcfcross.R | 28 ++-
spatstat-1.23-0/spatstat/R/pcfinhom.R | 40 ++++-
spatstat-1.23-0/spatstat/R/pcfmulti.inhom.R | 15 +-
spatstat-1.23-0/spatstat/R/plot.fv.R | 114 ++++++++++-----
spatstat-1.23-0/spatstat/R/ppmclass.R | 9 +
spatstat-1.23-0/spatstat/R/psst.R |only
spatstat-1.23-0/spatstat/R/psstA.R |only
spatstat-1.23-0/spatstat/R/psstG.R |only
spatstat-1.23-0/spatstat/R/rLGCP.R | 5
spatstat-1.23-0/spatstat/R/relrisk.R | 7
spatstat-1.23-0/spatstat/R/residppm.R | 48 +++++-
spatstat-1.23-0/spatstat/R/rhohat.R | 14 -
spatstat-1.23-0/spatstat/R/util.R | 34 ++++
spatstat-1.23-0/spatstat/data/amacrine.rda |binary
spatstat-1.23-0/spatstat/data/anemones.rda |binary
spatstat-1.23-0/spatstat/data/ants.rda |binary
spatstat-1.23-0/spatstat/data/bei.rda |binary
spatstat-1.23-0/spatstat/data/betacells.rda |binary
spatstat-1.23-0/spatstat/data/bramblecanes.rda |binary
spatstat-1.23-0/spatstat/data/bronzefilter.rda |binary
spatstat-1.23-0/spatstat/data/cells.rda |binary
spatstat-1.23-0/spatstat/data/chicago.rda |only
spatstat-1.23-0/spatstat/data/chorley.rda |binary
spatstat-1.23-0/spatstat/data/copper.rda |binary
spatstat-1.23-0/spatstat/data/datalist | 2
spatstat-1.23-0/spatstat/data/demopat.rda |binary
spatstat-1.23-0/spatstat/data/finpines.rda |binary
spatstat-1.23-0/spatstat/data/flu.rda |only
spatstat-1.23-0/spatstat/data/ganglia.rda |binary
spatstat-1.23-0/spatstat/data/hamster.rda |binary
spatstat-1.23-0/spatstat/data/heather.rda |binary
spatstat-1.23-0/spatstat/data/humberside.rda |binary
spatstat-1.23-0/spatstat/data/japanesepines.rda |binary
spatstat-1.23-0/spatstat/data/lansing.rda |binary
spatstat-1.23-0/spatstat/data/letterR.rda |binary
spatstat-1.23-0/spatstat/data/longleaf.rda |binary
spatstat-1.23-0/spatstat/data/murchison.rda |binary
spatstat-1.23-0/spatstat/data/nbfires.rda |binary
spatstat-1.23-0/spatstat/data/nztrees.rda |binary
spatstat-1.23-0/spatstat/data/osteo.rda |binary
spatstat-1.23-0/spatstat/data/ponderosa.rda |binary
spatstat-1.23-0/spatstat/data/redwood.rda |binary
spatstat-1.23-0/spatstat/data/redwoodfull.rda |binary
spatstat-1.23-0/spatstat/data/residualspaper.rda |binary
spatstat-1.23-0/spatstat/data/shapley.rda |binary
spatstat-1.23-0/spatstat/data/simdat.rda |binary
spatstat-1.23-0/spatstat/data/simplenet.rda |binary
spatstat-1.23-0/spatstat/data/spruces.rda |binary
spatstat-1.23-0/spatstat/data/swedishpines.rda |binary
spatstat-1.23-0/spatstat/data/urkiola.rda |binary
spatstat-1.23-0/spatstat/demo/data.R | 12 +
spatstat-1.23-0/spatstat/demo/diagnose.R | 23 +++
spatstat-1.23-0/spatstat/demo/spatstat.R | 28 ++-
spatstat-1.23-0/spatstat/inst/doc/shapefiles.pdf |binary
spatstat-1.23-0/spatstat/man/Gcom.Rd |only
spatstat-1.23-0/spatstat/man/Gres.Rd |only
spatstat-1.23-0/spatstat/man/Kcom.Rd |only
spatstat-1.23-0/spatstat/man/Kinhom.Rd | 36 ++++-
spatstat-1.23-0/spatstat/man/Kres.Rd |only
spatstat-1.23-0/spatstat/man/anova.lppm.Rd |only
spatstat-1.23-0/spatstat/man/as.interact.Rd |only
spatstat-1.23-0/spatstat/man/bei.Rd | 10 -
spatstat-1.23-0/spatstat/man/chicago.Rd |only
spatstat-1.23-0/spatstat/man/compareFit.Rd |only
spatstat-1.23-0/spatstat/man/density.ppp.Rd | 5
spatstat-1.23-0/spatstat/man/envelope.lpp.Rd |only
spatstat-1.23-0/spatstat/man/fitin.Rd | 1
spatstat-1.23-0/spatstat/man/flu.Rd |only
spatstat-1.23-0/spatstat/man/lgcp.estK.Rd | 4
spatstat-1.23-0/spatstat/man/lgcp.estpcf.Rd | 4
spatstat-1.23-0/spatstat/man/linearK.Rd | 30 +++-
spatstat-1.23-0/spatstat/man/linearKinhom.Rd |only
spatstat-1.23-0/spatstat/man/lineardisc.Rd |only
spatstat-1.23-0/spatstat/man/linearpcf.Rd |only
spatstat-1.23-0/spatstat/man/linearpcfinhom.Rd |only
spatstat-1.23-0/spatstat/man/linim.Rd |only
spatstat-1.23-0/spatstat/man/lppm.Rd |only
spatstat-1.23-0/spatstat/man/methods.lppm.Rd |only
spatstat-1.23-0/spatstat/man/npfun.Rd |only
spatstat-1.23-0/spatstat/man/pcfinhom.Rd | 48 ++++++
spatstat-1.23-0/spatstat/man/plot.fv.Rd | 32 +++-
spatstat-1.23-0/spatstat/man/plot.linim.Rd |only
spatstat-1.23-0/spatstat/man/predict.lppm.Rd |only
spatstat-1.23-0/spatstat/man/psst.Rd |only
spatstat-1.23-0/spatstat/man/psstA.Rd |only
spatstat-1.23-0/spatstat/man/psstG.Rd |only
spatstat-1.23-0/spatstat/man/rLGCP.Rd | 22 +--
spatstat-1.23-0/spatstat/man/relrisk.Rd | 17 +-
spatstat-1.23-0/spatstat/man/residuals.ppm.Rd | 56 +++++++
spatstat-1.23-0/spatstat/man/spatstat-internal.Rd |only
spatstat-1.23-0/spatstat/man/spatstat-package.Rd | 105 ++++++++++++--
spatstat-1.23-0/spatstat/man/spatstat.options.Rd | 53 +++++++
spatstat-1.23-0/spatstat/src/lineardisc.c |only
spatstat-1.23-0/spatstat/tests/fvproblems.R | 34 ++++
124 files changed, 1240 insertions(+), 323 deletions(-)
Title: Bayesian graphical models using MCMC
Diff between rjags versions 2.2.0-4 dated 2011-03-22 and 3-2 dated 2011-07-24
Description: Interface to the JAGS MCMC library
Author: Martyn Plummer
Maintainer: Martyn Plummer
.hgtags |only
DESCRIPTION | 10
NAMESPACE | 4
R/jags.R | 69 +++--
R/jags.object.R | 101 +++-----
R/read.data.R | 1
R/unix/zzz.R.in | 2
R/windows/zzz.R | 89 ++++---
configure | 578 +++++++++++++++++++++++++++---------------------
configure.ac | 16 +
man/control.Rd | 2
man/jags.model.Rd | 16 -
man/mcarray.object.Rd | 1
man/read.data.Rd | 41 +--
man/rjags-deprecated.Rd |only
src/Makevars.in | 4
src/Makevars.win | 2
src/jags.cc | 53 ++--
18 files changed, 567 insertions(+), 422 deletions(-)
Title: Locally stationary two-dimensional wavelet process estimation
scheme
Diff between LS2W versions 1.2 dated 2011-04-23 and 1.3 dated 2011-07-24
Description: Estimates two-dimensional local wavelet spectra
Author: Idris Eckley
Maintainer: Idris Eckley
DESCRIPTION | 10 -
R/summary.cddews.R | 4
data/textures.rda |binary
inst |only
man/A.Rd | 4
man/A2name.Rd | 103 +++++++++---------
man/D1Amat.Rd | 86 ++++++++-------
man/D2ACW.Rd | 147 +++++++++++++-------------
man/D2ACWmat.Rd | 281 +++++++++++++++++++++++++-------------------------
man/D2Amat.Rd | 132 +++++++++++------------
man/D2autoplot.Rd | 100 +++++++++--------
man/Haar2MA.diag.Rd | 92 ++++++++--------
man/Haar2MA.horiz.Rd | 94 ++++++++--------
man/Haar2MA.vert.Rd | 93 ++++++++--------
man/HaarMontage.Rd | 83 +++++++-------
man/LS2W-package.Rd | 180 ++++++++++++++++----------------
man/Phi1Dname.Rd | 102 +++++++++---------
man/PhiJ.Rd | 151 +++++++++++++-------------
man/Psi1Dname.Rd | 97 +++++++++--------
man/Psi2Dname.Rd | 84 ++++++++------
man/PsiJ.Rd | 254 ++++++++++++++++++++++-----------------------
man/cddews.Rd | 176 +++++++++++++++----------------
man/example.ls2w.Rd | 78 +++++++------
man/getdata.Rd | 69 ++++++------
man/imwd.Rd | 135 ++++++++++++------------
man/print.cddews.Rd | 86 +++++++--------
man/sample.stats.Rd | 70 ++++++------
man/specplot.Rd | 106 +++++++++---------
man/summary.cddews.Rd | 49 ++++----
man/threshold.imwd.Rd | 150 +++++++++++++-------------
30 files changed, 1544 insertions(+), 1472 deletions(-)
Title: Functions, data and code for count data.
Diff between COUNT versions 1.1.2 dated 2011-03-22 and 1.2.0 dated 2011-07-24
Description: Functions, data and code for Hilbe, J.M. 2009. Negative
Binomial Regression, 2nd Edition (Cambridge University Press)
Author: Joseph M Hilbe
Maintainer: Joseph M Hilbe
COUNT-1.1.2/COUNT/R/nb1syn.r |only
COUNT-1.1.2/COUNT/R/nbcsyn.r |only
COUNT-1.1.2/COUNT/man/nb1syn.Rd |only
COUNT-1.1.2/COUNT/man/nbcsyn.Rd |only
COUNT-1.2.0/COUNT/DESCRIPTION | 14 +++++++-------
COUNT-1.2.0/COUNT/R/ml.nb1.r | 6 +++---
COUNT-1.2.0/COUNT/R/ml.nb2.r | 6 +++---
COUNT-1.2.0/COUNT/R/ml.nbc.r | 2 +-
COUNT-1.2.0/COUNT/R/ml.pois.r |only
COUNT-1.2.0/COUNT/R/nb1_syn.r |only
COUNT-1.2.0/COUNT/R/nbc_syn.r |only
COUNT-1.2.0/COUNT/data/affairs.rda |binary
COUNT-1.2.0/COUNT/data/azdrg112.rda |binary
COUNT-1.2.0/COUNT/data/azpro.rda |binary
COUNT-1.2.0/COUNT/data/badhealth.rda |binary
COUNT-1.2.0/COUNT/data/fasttrakg.rda |binary
COUNT-1.2.0/COUNT/data/lbw.rda |binary
COUNT-1.2.0/COUNT/data/lbwgrp.rda |binary
COUNT-1.2.0/COUNT/data/loomis.rda |binary
COUNT-1.2.0/COUNT/data/mdvis.rda |binary
COUNT-1.2.0/COUNT/data/medpar.rda |binary
COUNT-1.2.0/COUNT/data/rwm.rda |binary
COUNT-1.2.0/COUNT/data/rwm5yr.rda |binary
COUNT-1.2.0/COUNT/data/ships.rda |binary
COUNT-1.2.0/COUNT/data/titanic.rda |binary
COUNT-1.2.0/COUNT/data/titgrp.rda |binary
COUNT-1.2.0/COUNT/man/logit_syn.Rd | 6 +++---
COUNT-1.2.0/COUNT/man/ml.nb1.Rd | 7 ++++++-
COUNT-1.2.0/COUNT/man/ml.nb2.Rd | 7 ++++++-
COUNT-1.2.0/COUNT/man/ml.pois.Rd |only
COUNT-1.2.0/COUNT/man/nb1_syn.Rd |only
COUNT-1.2.0/COUNT/man/nb2_syn.Rd | 2 +-
COUNT-1.2.0/COUNT/man/nbc_syn.Rd |only
33 files changed, 30 insertions(+), 20 deletions(-)
Title: Shenzhen Institutes of Advanced Technology Clustering Suite
Diff between siatclust versions 1.0.0 dated 2011-06-15 and 1.0.2 dated 2011-07-24
Description: A collection of cluster analysis tools and algorithms for
data mining developed at the Shenzhen Institutes of Advanced
Technology (SIAT) under the Senior International Scientist
program of the Chinese Academy of Sciences. Development of this
package is also supported by the Shenzhen High Technology
Development Fund within the Shenzhen Key Laboratory for High
Performance Data Mining.
Author: Graham J Williams, Joshua Z Huang, Xiaojun Chen, Qiang Wang
Maintainer: Graham Williams
DESCRIPTION | 8 ++--
R/ewkm.R | 19 +++++++++--
inst |only
man/ewkm.Rd | 27 +++++++++++++++-
src/ewkm.c | 98 ++++++++++++++++++++++++++++++++++++++++++++++--------------
tests |only
6 files changed, 121 insertions(+), 31 deletions(-)
Title: Statistical inference for partially observed Markov processes
Diff between pomp versions 0.38-3 dated 2011-06-09 and 0.38-5 dated 2011-07-24
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner,
Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael
Lavine, Daniel C. Reuman
Maintainer: Aaron A. King
DESCRIPTION | 10 +---
R/aaa.R | 7 +-
R/pfilter.R | 4 -
R/spect.R | 3 -
data/LondonYorke.rda |binary
data/blowflies.rda |binary
data/dacca.rda |binary
data/euler.sir.rda |binary
data/gillespie.sir.rda |binary
data/gompertz.rda |binary
data/ou2.rda |binary
data/ricker.rda |binary
data/rw2.rda |binary
data/verhulst.rda |binary
inst/ChangeLog | 87 +++++++++++++++++++++++++++++++++++
inst/NEWS | 9 +++
inst/doc/advanced_topics_in_pomp.Rnw | 2
inst/doc/advanced_topics_in_pomp.pdf |binary
inst/doc/intro_to_pomp.Rnw | 50 +++++++++++++++++---
inst/doc/intro_to_pomp.pdf |binary
man/eulermultinom.Rd | 6 --
src/SSA.f | 12 ++++
tests/fhn.Rout.save | 8 +--
tests/filtfail.Rout.save | 4 -
tests/gillespie.Rout.save | 8 ++-
tests/logistic.Rout.save | 2
tests/ou2-bsmc.Rout.save | 10 ++--
tests/ou2-forecast.Rout.save | 2
tests/ou2-kalman.Rout.save | 10 ++--
tests/ou2-mif.Rout.save | 2
tests/ou2-nlf.Rout.save | 4 -
tests/ou2-pmcmc.Rout.save | 8 ++-
tests/ou2-probe.Rout.save | 4 -
tests/ou2-procmeas.Rout.save | 2
tests/ou2-simulate.Rout.save | 4 -
tests/ou2-trajmatch.Rout.save | 44 ++++++++---------
tests/pfilter.Rout.save | 2
tests/pomppomp.Rout.save | 2
tests/ricker-probe.Rout.save | 8 +--
tests/ricker-spect.Rout.save | 8 ++-
tests/ricker.Rout.save | 18 +++----
tests/rw2.Rout.save | 8 +--
tests/sir-icfit.Rout.save | 52 ++++++++++----------
tests/sir.Rout.save | 30 ++++++------
tests/skeleton.Rout.save | 20 ++++----
tests/synlik.Rout.save | 2
46 files changed, 304 insertions(+), 148 deletions(-)
Title: A probe-level data file format used by aroma.affymetrix
[DEPRECATED]
Diff between aroma.apd versions 0.1.8 dated 2011-02-01 and 0.2.0 dated 2011-07-24
Description: THIS PACKAGE HAS BEEN DEPRECATED. (The (in-house) APD file
format was initially developed to store Affymetrix probe-level
data, e.g. normalized CEL intensites. Chip types can be added
to APD file and similar to methods in the affxparser package,
this package provides methods to read APDs organized by units
(probesets). In addition, the probe elements can be arranged
optimally such that the elements are guaranteed to be read in
order when, for instance, data is read unit by unit. This
speed up the read substantially. This package is supporting
the aroma.affymetrix package and not intended to be used
elsewhere.)
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
aroma.apd-0.1.8/aroma.apd/R/hide |only
aroma.apd-0.1.8/aroma.apd/inst/data-ex |only
aroma.apd-0.2.0/aroma.apd/DESCRIPTION | 15 +++++++--------
aroma.apd-0.2.0/aroma.apd/R/zzz.R | 27 +++++++++++++++++++++++++++
aroma.apd-0.2.0/aroma.apd/inst/NEWS | 10 ++++++++++
5 files changed, 44 insertions(+), 8 deletions(-)
Title: An R Package for the Calculation and Visualization of Student
Growth Percentiles.
Diff between SGP versions 0.1-0.0 dated 2011-06-18 and 0.3-5.0 dated 2011-07-24
Description: Functions to calculate student growth percentiles and
percentile growth projections/trajectories for students using
large scale, longitudinal assessment data. Functions use
quantile regression to estimate the conditional density
associated with each student's achievement history. Percentile
growth projections/trajectories are calculated using the
coefficient matrices derived from the quantile regression
analyses and specify what percentile growth is required for
students to reach future achievement targets.
Author: Damian W. Betebenner
Maintainer: Damian W. Betebenner
DESCRIPTION | 26 +
R/SGP-class.R | 4
R/abcSGP.R | 63 +++-
R/analyzeSGP.R | 112 +++++---
R/bubblePlot.R | 71 +++--
R/bubblePlot_Styles.R |only
R/combineSGP.R | 53 +++
R/growthAchievementPlot.R |only
R/prepareSGP.R | 9
R/studentGrowthPercentiles.R | 22 +
R/studentGrowthPlot.R | 3
R/studentGrowthProjections.R | 44 ++-
R/summarizeSGP.R | 20 +
R/visualizeSGP.R | 551 ++++++++++++++++++++++------------------
data/sgpData.rda |binary
data/sgpData_LONG.rda |binary
data/stateData.rda |binary
inst/CITATION | 4
inst/NEWS | 37 ++
man/SGP-package.Rd | 13
man/abcSGP.Rd | 16 +
man/analyzeSGP.Rd | 37 +-
man/bubblePlot.Rd | 22 +
man/bubblePlot_Styles.Rd |only
man/combineSGP.Rd | 14 -
man/growthAchievementPlot.Rd |only
man/studentGrowthPercentiles.Rd | 62 ++++
man/studentGrowthProjections.Rd | 5
man/summarizeSGP.Rd | 54 ++-
man/visualizeSGP.Rd | 219 ++++++++++-----
30 files changed, 972 insertions(+), 489 deletions(-)
Title: Various programming utilities
Diff between R.utils versions 1.7.5 dated 2011-04-27 and 1.7.7 dated 2011-07-24
Description: This package provides utility classes and methods useful
when programming in R and developing R packages.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 10 +++++-----
NAMESPACE | 9 ++++++++-
R/capitalize.R | 8 +-------
R/isReplicated.R |only
R/isSingle.R |only
incl/capitalize.Rex |only
incl/isReplicated.Rex |only
inst/NEWS | 11 +++++++++++
man/isReplicated.Rd |only
man/isSingle.Rd |only
10 files changed, 25 insertions(+), 13 deletions(-)
Title: Dynamic generation of scientific reports
Diff between R.rsp versions 0.5.4 dated 2011-06-25 and 0.6.0 dated 2011-07-24
Description: An RSP document is a text-based document containing an
R-embedded template of the final document. An RSP document is
preprocessed, parsed and translated into an R script, which
when sourced generates the final document. This way it is
possible to dynamically generate reports in plain text, HTML,
TeX etc. It can also be used to enhance other literate
programming languanges such as Sweave. In addition to RSP,
this package also provides an internal cross-platform web
server and built-in dynamic RSP-embedded HTML help pages, which
can be launched by browseRsp(). If other packages provide RSP
help pages, these are automatically linked to as well.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 10 +++----
NAMESPACE |only
R/zzz.R | 10 +++++++
inst/NEWS | 5 +++
inst/doc/index.html | 66 ++++++++++++++++++++++++++--------------------------
inst/doc/report.pdf |binary
6 files changed, 51 insertions(+), 40 deletions(-)
Title: Methods for accessing huge amounts of data [DEPRECATED]
Diff between R.huge versions 0.2.2 dated 2011-02-03 and 0.3.0 dated 2011-07-24
Description: THIS PACKAGE HAS BEEN DEPRECATED. Do not start building
new projects based on it. Cross-platform alternatives are the
following packages: bigmemory (CRAN), ff (CRAN), BufferedMatrix
(BioConductor). The main usage of it was inside the
aroma.affymetrix package. (The package currently provides a
class representing a matrix where the actual data is stored in
a binary format on the local file system. This way the size
limit of the data is set by the file system and not the
memory.)
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 12 +++++-------
NAMESPACE |only
R/zzz.R | 9 ++++++++-
inst/NEWS | 8 ++++++++
4 files changed, 21 insertions(+), 8 deletions(-)
Title: Analysis of Parent-Specific DNA Copy Numbers
Diff between PSCBS versions 0.11.7 dated 2011-07-23 and 0.12.0 dated 2011-07-24
Description: Segments allele-specific DNA copy number data to detect
regions with abnormal copy number within each parental
chromosome
Author: A.B. Olshen, H. Bengtsson, P. Neuvial, P.T. Spellman, R.A.
Olshen, V.E. Seshan
Maintainer: Henrik Bengtsson
DESCRIPTION | 8 ++++----
NAMESPACE |only
R/zzz.R | 11 +++++++++--
inst/NEWS | 8 ++++++++
4 files changed, 21 insertions(+), 6 deletions(-)