Title: General-purpose optimisation with the Self-Organising Migrating
Algorithm
Diff between soma versions 1.0.0 dated 2010-12-13 and 1.1.0 dated 2011-07-28
Description: This package provides an R implementation of the
Self-Organising Migrating Algorithm, a general-purpose,
stochastic optimisation algorithm. The approach is similar to
that of genetic algorithms, although it is based on the idea of
a series of ``migrations'' by a fixed set of individuals,
rather than the development of successive generations. It can
be applied to any cost-minimisation problem with a bounded
parameter space, and is robust to local minima.
Author: Jon Clayden; based on the work of Ivan Zelinka
Maintainer: Jon Clayden
DESCRIPTION | 11 ++++++-----
NAMESPACE |only
NEWS |only
R/soma.R | 9 +++++++--
man/soma.Rd | 11 ++++++++++-
5 files changed, 23 insertions(+), 8 deletions(-)
Title: Robust Time Series Filters
Diff between robfilter versions 2.6.1 dated 2010-04-22 and 3.0 dated 2011-07-28
Description: A set of functions to filter time series based on concepts
from robust statistics.
Author: Roland Fried
Maintainer: Matthias Borowski
robfilter-2.6.1/robfilter/orig_man |only
robfilter-2.6.1/robfilter/privdata/readme |only
robfilter-3.0/robfilter/DESCRIPTION | 15 +--
robfilter-3.0/robfilter/NAMESPACE | 3
robfilter-3.0/robfilter/R/scarm.filter.R |only
robfilter-3.0/robfilter/data/const.Q.rda |only
robfilter-3.0/robfilter/data/const.rda |binary
robfilter-3.0/robfilter/data/critvals.rda |binary
robfilter-3.0/robfilter/data/dfs.rda |only
robfilter-3.0/robfilter/data/multi.ts.rda |binary
robfilter-3.0/robfilter/data/sysdata.rda |only
robfilter-3.0/robfilter/data/var.n.rda |only
robfilter-3.0/robfilter/inst/doc/getting_started.aux | 5 -
robfilter-3.0/robfilter/inst/doc/getting_started.dvi |only
robfilter-3.0/robfilter/inst/doc/getting_started.log | 93 ++++++++++---------
robfilter-3.0/robfilter/inst/doc/getting_started.pdf |binary
robfilter-3.0/robfilter/inst/doc/getting_started.tex | 69 ++++++++------
robfilter-3.0/robfilter/man/const.Q.Rd |only
robfilter-3.0/robfilter/man/dfs.Rd |only
robfilter-3.0/robfilter/man/dr.filter.Rd |only
robfilter-3.0/robfilter/man/lms.filter.Rd |only
robfilter-3.0/robfilter/man/lqd.filter.Rd |only
robfilter-3.0/robfilter/man/lts.filter.Rd |only
robfilter-3.0/robfilter/man/med.filter.Rd |only
robfilter-3.0/robfilter/man/rm.filter.Rd |only
robfilter-3.0/robfilter/man/robfilter-package.Rd |only
robfilter-3.0/robfilter/man/robreg.filter.Rd | 27 +----
robfilter-3.0/robfilter/man/scarm.filter.Rd |only
robfilter-3.0/robfilter/man/sizecor.Rd |only
robfilter-3.0/robfilter/man/timecor.Rd |only
robfilter-3.0/robfilter/man/var.n.Rd |only
31 files changed, 112 insertions(+), 100 deletions(-)
Title: Solve systems of non linear equations
Diff between nleqslv versions 1.8.5 dated 2011-05-15 and 1.8.6 dated 2011-07-28
Description: Solve a system of non linear equations using a Broyden or
a Newton method with a choice of global strategies such as
linesearch and trust region. There are options for using a
numerical or an analytical jacobian and fixed or automatic
scaling of parameters.
Author: Berend Hasselman
Maintainer: Berend Hasselman
DESCRIPTION | 8 ++--
NAMESPACE |only
NEWS | 7 +++
R/nleqslv.R | 6 +--
man/nleqslv.Rd | 4 +-
man/zznleqslv-iterationreport.Rd | 77 +++++++++++++++++++++------------------
src/nwddlg.f | 15 +++----
src/nwout.c | 20 +++++-----
src/nwpdlg.f | 8 ++--
9 files changed, 79 insertions(+), 66 deletions(-)
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Diff between gmm versions 1.3-6 dated 2011-04-07 and 1.3-8 dated 2011-07-28
Description: It is a complete suite to estimate models based on moment
conditions. It includes the two step Generalized method of
moments (GMM) of Hansen(1982), the iterated GMM and continuous
updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several
methods that belong to the Generalized Empirical Likelihood
(GEL) family of estimators, as presented by Smith(1997),
Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
Author: Pierre Chausse
Maintainer: Pierre Chausse
DESCRIPTION | 12 +-
NEWS | 16 +++
R/FinRes.R | 52 +++++++++--
R/Methods.gmm.R | 20 +++-
R/gmm.R | 41 +++++++-
R/momentEstim.R | 221 +++++++++++++++++++++++++++++++++++++++++++-----
R/specTest.R | 14 ++-
data/Finance.rda |binary
inst/doc/gmm_with_R.pdf |binary
inst/doc/gmm_with_R.rnw | 4
man/gmm.Rd | 86 +++++++++---------
11 files changed, 372 insertions(+), 94 deletions(-)
Title: Neural Networks in R using the Stuttgart Neural Network
Simulator (SNNS)
Diff between RSNNS versions 0.4-0 dated 2011-06-21 and 0.4-1 dated 2011-07-28
Description: The Stuttgart Neural Network Simulator (SNNS) is a library
containing many standard implementations of neural networks.
This package wraps the SNNS functionality to make it available
from within R. Using the RSNNS low-level interface, all of the
algorithmic functionality and flexibility of SNNS can be
accessed. Furthermore, the package contains a convenient
high-level interface, so that the most common neural network
topologies and learning algorithms integrate seamlessly into R.
Author: Christoph Bergmeir
Maintainer: Christoph Bergmeir
RSNNS-0.4-0/RSNNS/COPYING.LIB |only
RSNNS-0.4-0/RSNNS/inst/doc/ChangeLog |only
RSNNS-0.4-1/RSNNS/ChangeLog |only
RSNNS-0.4-1/RSNNS/DESCRIPTION | 9 +++---
RSNNS-0.4-1/RSNNS/LICENSE |only
RSNNS-0.4-1/RSNNS/R/parser.R | 2 -
RSNNS-0.4-1/RSNNS/src/cc_glob.cpp | 12 ++++----
RSNNS-0.4-1/RSNNS/src/cc_learn.cpp | 9 +++---
RSNNS-0.4-1/RSNNS/src/init_f.cpp | 4 +-
RSNNS-0.4-1/RSNNS/src/kernel.cpp | 5 ++-
RSNNS-0.4-1/RSNNS/src/kr_art1.cpp | 4 +-
RSNNS-0.4-1/RSNNS/src/kr_io.cpp | 46 ++++++++++++++++++--------------
RSNNS-0.4-1/RSNNS/src/kr_mac.h | 6 ++--
RSNNS-0.4-1/RSNNS/src/kr_newpattern.cpp | 4 +-
RSNNS-0.4-1/RSNNS/src/kr_pat_scan.cpp | 3 +-
RSNNS-0.4-1/RSNNS/src/kr_td.cpp | 18 ++++++------
RSNNS-0.4-1/RSNNS/src/learn_f.cpp | 29 +++++++++-----------
RSNNS-0.4-1/RSNNS/src/prun_f.cpp | 6 ++--
RSNNS-0.4-1/RSNNS/src/tacoma_learn.cpp | 10 ++++--
RSNNS-0.4-1/RSNNS/src/update_f.cpp | 44 ++++++++++++++++++------------
20 files changed, 117 insertions(+), 94 deletions(-)
Title: Oracle database interface for R
Diff between ROracle versions 0.5-9 dated 2007-10-15 and 0.5-11 dated 2011-07-28
Description: Oracle database interface (DBI) driver for R. This is a
DBI-compliant Oracle driver based on the ProC/C++ embedded SQL.
It implements the DBI version 0.1-8 plus one extension.
Author: David A. James and Jake Luciani
Maintainer: David A. James
ROracle-0.5-11/ROracle/DESCRIPTION | 16 +++++++------
ROracle-0.5-11/ROracle/NAMESPACE |only
ROracle-0.5-11/ROracle/R/OraSupport.R | 8 +++++-
ROracle-0.5-11/ROracle/R/Oracle.R | 4 +--
ROracle-0.5-11/ROracle/R/S4R.R | 2 -
ROracle-0.5-11/ROracle/R/dbObjectId.R | 2 -
ROracle-0.5-11/ROracle/R/zzz.R | 6 ++---
ROracle-0.5-11/ROracle/configure | 3 --
ROracle-0.5-11/ROracle/configure.in | 2 -
ROracle-0.5-11/ROracle/inst/NEWS | 14 +++++++++++
ROracle-0.5-11/ROracle/inst/doc/DBI.pdf |binary
ROracle-0.5-11/ROracle/man/DBIPreparedStatement-class.Rd | 2 -
ROracle-0.5-11/ROracle/man/OraConnection-class.Rd | 2 -
ROracle-0.5-11/ROracle/man/OraDriver-class.Rd | 2 -
ROracle-0.5-11/ROracle/man/OraObject-class.Rd | 2 -
ROracle-0.5-11/ROracle/man/OraPreparedStatement-class.Rd | 2 -
ROracle-0.5-11/ROracle/man/OraResult-class.Rd | 2 -
ROracle-0.5-11/ROracle/man/Oracle.Rd | 4 +--
ROracle-0.5-11/ROracle/man/S4R.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbCallProc-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbCommit-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbConnect-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbDataType-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbDriver-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbGetInfo-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbListTables-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbObjectId-class.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbPrepareStatement-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbReadTable-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbSendQuery-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/dbSetDataMappings-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/fetch-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/isIdCurrent.Rd | 2 -
ROracle-0.5-11/ROracle/man/make.db.names-methods.Rd | 2 -
ROracle-0.5-11/ROracle/man/oraParseConParams.Rd | 2 -
ROracle-0.5-11/ROracle/man/oraSupport.Rd | 2 -
ROracle-0.5-11/ROracle/man/safe.write.Rd | 6 ++---
ROracle-0.5-11/ROracle/man/summary-methods.Rd | 2 -
ROracle-0.5-11/ROracle/src/Makefile.win | 2 -
ROracle-0.5-11/ROracle/src/RS-DBI.c | 6 ++---
ROracle-0.5-11/ROracle/src/RS-DBI.h | 2 -
ROracle-0.5-11/ROracle/src/RS-Oracle.h | 6 ++---
ROracle-0.5-11/ROracle/src/RS-Oracle.pc | 18 +++++++++------
ROracle-0.5-9/ROracle/sqlnet.log |only
ROracle-0.5-9/ROracle/src/ROracle.def |only
45 files changed, 87 insertions(+), 64 deletions(-)
Title: Medical image registration using the NiftyReg library
Diff between RNiftyReg versions 0.3.1 dated 2011-01-04 and 0.4.1 dated 2011-07-28
Description: This package provides an R interface to the NiftyReg image
registration tools
Author: Jon Clayden; based on original code by Marc Modat and Pankaj
Daga
Maintainer: Jon Clayden
.gitignore |only
DESCRIPTION | 9 +++++----
NAMESPACE |only
NEWS | 16 ++++++++++++++++
R/affine.R | 16 ++++++++--------
R/niftyreg.R | 43 ++++++++++++++++++++++++++++++-------------
R/xform.R | 4 ++--
R/zzz.R | 4 +---
man/niftyreg.Rd | 19 +++++++++++++------
9 files changed, 75 insertions(+), 36 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Diff between ChemoSpec versions 1.46-4 dated 2011-03-27 and 1.47-1 dated 2011-07-28
Description: A collection of functions for plotting spectra (NMR, IR
etc) and carrying out various forms of top-down exploratory
data analysis, such as HCA, PCA and model-based clustering.
The design allows comparison of data from samples which fall
into groups such as treatment vs. control. Robust methods
appropriate for this type of high-dimensional data are
available. ChemoSpec is designed to be very user friendly and
suitable for people with limited background in R.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson
ChemoSpec-1.46-4/ChemoSpec/data/gasNIR.RData |only
ChemoSpec-1.46-4/ChemoSpec/inst/doc/graphics |only
ChemoSpec-1.46-4/ChemoSpec/man/gasNIR.Rd |only
ChemoSpec-1.47-1/ChemoSpec/DESCRIPTION | 11 -
ChemoSpec-1.47-1/ChemoSpec/NEWS | 19 +-
ChemoSpec-1.47-1/ChemoSpec/R/aovPCA.R |only
ChemoSpec-1.47-1/ChemoSpec/R/aovPCAloadings.R |only
ChemoSpec-1.47-1/ChemoSpec/R/aovPCAscores.R |only
ChemoSpec-1.47-1/ChemoSpec/R/avgFacLvls.R |only
ChemoSpec-1.47-1/ChemoSpec/R/classPCA.R | 8
ChemoSpec-1.47-1/ChemoSpec/R/hmapSpectra.R | 2
ChemoSpec-1.47-1/ChemoSpec/R/plotScores.R | 8
ChemoSpec-1.47-1/ChemoSpec/R/sPlotSpectra.R |only
ChemoSpec-1.47-1/ChemoSpec/R/splitSpectraGroups.R | 36 +++
ChemoSpec-1.47-1/ChemoSpec/data/datalist |only
ChemoSpec-1.47-1/ChemoSpec/inst/doc/.Rhistory |only
ChemoSpec-1.47-1/ChemoSpec/inst/doc/ChemoSpec.Rnw | 179 ++++++++++++-------
ChemoSpec-1.47-1/ChemoSpec/inst/doc/ChemoSpec.pdf |binary
ChemoSpec-1.47-1/ChemoSpec/inst/doc/aovPCA1.pdf |only
ChemoSpec-1.47-1/ChemoSpec/inst/doc/aovPCA2.pdf |only
ChemoSpec-1.47-1/ChemoSpec/inst/doc/chemometrics.bib | 50 +++++
ChemoSpec-1.47-1/ChemoSpec/man/ChemoSpec-package.Rd | 4
ChemoSpec-1.47-1/ChemoSpec/man/aovPCA.Rd |only
ChemoSpec-1.47-1/ChemoSpec/man/aovPCAloadings.Rd |only
ChemoSpec-1.47-1/ChemoSpec/man/aovPCAscores.Rd |only
ChemoSpec-1.47-1/ChemoSpec/man/avgFacLvls.Rd |only
ChemoSpec-1.47-1/ChemoSpec/man/classPCA.Rd | 6
ChemoSpec-1.47-1/ChemoSpec/man/colorSymbol.Rd | 2
ChemoSpec-1.47-1/ChemoSpec/man/sPlotSpectra.Rd |only
ChemoSpec-1.47-1/ChemoSpec/man/seXy.Rd | 2
ChemoSpec-1.47-1/ChemoSpec/man/splitSpectraGroups.Rd | 18 +
31 files changed, 252 insertions(+), 93 deletions(-)
Title: A general message and error reporting system
Diff between reportr versions 0.1.0 dated 2010-10-27 and 0.2.0 dated 2011-07-28
Description: The reportr package provides a system for reporting
messages, which provides certain useful features over the
standard R system, such as the incorporation of output
consolidation, message filtering, automatic generation of stack
traces for debugging, and conditional reporting based on the
current "output level".
Author: Jon Clayden
Maintainer: Jon Clayden
reportr-0.1.0/reportr/R/zzz.R |only
reportr-0.2.0/reportr/DESCRIPTION | 15 +-
reportr-0.2.0/reportr/NAMESPACE |only
reportr-0.2.0/reportr/NEWS |only
reportr-0.2.0/reportr/R/00_constants.R |only
reportr-0.2.0/reportr/R/infix.R | 9 +
reportr-0.2.0/reportr/R/reportr.R | 188 +++++++++++++++++++++++----------
reportr-0.2.0/reportr/man/infix.Rd | 13 +-
reportr-0.2.0/reportr/man/reportr.Rd | 46 +++++---
9 files changed, 187 insertions(+), 84 deletions(-)
Title: R to LaTeX and HTML
Diff between r2lh versions 0.6.1 dated 2010-07-01 and 0.7 dated 2011-07-28
Description: generate univariate and bivariate analyses in LaTeX or
HTML formats
Author: Christophe Genolini, Bernard Desgraupes, Lionel Riou Franca
Maintainer: Christophe Genolini
r2lh-0.6.1/r2lh/data/AIDSknowledge.rda |only
r2lh-0.7/r2lh/DESCRIPTION | 8 ++++----
r2lh-0.7/r2lh/man/r2lh-package.Rd | 4 ++--
r2lh-0.7/r2lh/r2lh-Ex.R |only
4 files changed, 6 insertions(+), 6 deletions(-)
Title: K-Means for Longitudinal Data (KmL)
Diff between kml versions 1.1.2 dated 2010-05-04 and 1.1.3 dated 2011-07-28
Description: KmL is an implementation of k-means specificaly design to
deal with longitudinal data. It provide facilities to deal with
missing value and propose a graphical interphace for chosing
the correct number of clusters.
Author: Christophe Genolini
Maintainer: Christophe Genolini
DESCRIPTION | 8 ++++----
kml-Ex.R |only
man/choice.Rd | 6 ------
man/kml-package.Rd | 4 ++--
4 files changed, 6 insertions(+), 12 deletions(-)
Title: Utilities from Seminar fuer Statistik ETH Zurich
Diff between sfsmisc versions 1.0-15 dated 2011-05-28 and 1.0-16 dated 2011-07-28
Description: Useful utilities ['goodies'] from Seminar fuer Statistik
ETH Zurich, quite a few related to graphics; many ported from
S-plus times.
Author: Martin Maechler and many others.
Maintainer: Martin Maechler
sfsmisc-1.0-15/sfsmisc/DESCRIPTION+ |only
sfsmisc-1.0-15/sfsmisc/man/boxplot.matrix.Rd |only
sfsmisc-1.0-16/sfsmisc/ChangeLog | 12 ++++++++++
sfsmisc-1.0-16/sfsmisc/DESCRIPTION | 10 ++++----
sfsmisc-1.0-16/sfsmisc/NAMESPACE | 1
sfsmisc-1.0-16/sfsmisc/R/misc-goodies.R | 32 ---------------------------
sfsmisc-1.0-16/sfsmisc/R/pd-matrix.R | 3 --
sfsmisc-1.0-16/sfsmisc/data/potatoes.rda |binary
sfsmisc-1.0-16/sfsmisc/inst/ChangeLog | 12 ++++++++++
sfsmisc-1.0-16/sfsmisc/man/posdefify.Rd | 5 ++--
10 files changed, 34 insertions(+), 41 deletions(-)
Title: Functions useful in the design and ANOVA of experiments
Diff between dae versions 2.1-2 dated 2011-01-26 and 2.1-7 dated 2011-07-28
Description: This package includes a number of functions that aid in
generating experimental designs and in examining their
canonical efficiency factors. It also includes functions that
facilitate diagnostic checking after an aov, especially when
the Error function has been used in the call to aov.
Author: Chris Brien
Maintainer: Chris Brien
DESCRIPTION | 8 ++++----
R/fac.functions.r | 3 ++-
R/proj.r | 47 +++++++++++++++++++++++++++++------------------
R/qqyeffects.r | 18 ++++++------------
R/rmvnorm.r | 18 +++++++++++-------
man/elements.Rd | 6 +++---
man/rmvnorm.Rd | 6 ++++--
7 files changed, 59 insertions(+), 47 deletions(-)
Title: Estimation, Diagnostic and Forecasting Functions for ARFIMA
models
Diff between afmtools versions 0.1.2 dated 2011-05-03 and 0.1.4 dated 2011-07-28
Description: A collection of estimation, forecasting and diagnostic
tools for autoregressive fractionally integrated moving-average
process (ARFIMA).
Author: Javier Contreras-Reyes, Georg M. Goerg, Wilfredo Palma
Maintainer: Javier Contreras-Reyes
DESCRIPTION | 6 ++---
R/pred.arfima.R | 2 -
data/TreeRing.rda |only
man/MammothCreek.Rd | 4 +--
man/TreeRing.Rd |only
man/afmtools-package.Rd | 6 +++--
man/check.parameters.arfima.Rd | 2 -
man/gw.test.Rd | 39 +++++++++++++----------------------
man/per.arfima.Rd | 18 +++++++---------
man/pi.j.Rd | 2 -
man/pred.arfima.Rd | 45 +++++++----------------------------------
man/rho.arma.Rd | 6 +----
man/rho.sowell.Rd | 36 +++-----------------------------
man/spectrum.arfima.Rd | 2 -
14 files changed, 48 insertions(+), 120 deletions(-)
Title: R/Weka interface jars
Diff between RWekajars versions 3.7.3-1 dated 2010-12-14 and 3.7.4-1 dated 2011-07-28
Description: External jars required for package RWeka.
Author: Kurt Hornik
Maintainer: Kurt Hornik
DESCRIPTION | 8 ++++----
inst/java/weka.jar |binary
2 files changed, 4 insertions(+), 4 deletions(-)
Title: R/Weka interface
Diff between RWeka versions 0.4-7 dated 2011-04-09 and 0.4-8 dated 2011-07-28
Description: An R interface to Weka (Version 3.7.4). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package RWeka contains the interface code, the
Weka jar is in a separate package RWekajars. For more
information on Weka see http://www.cs.waikato.ac.nz/~ml/weka/.
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Maintainer: Kurt Hornik
CHANGELOG | 7
DESCRIPTION | 10 -
inst/arff/cpu.arff | 404 +++++++++++++++++++++++-----------------------
inst/arff/diabetes.arff |only
inst/arff/glass.arff |only
inst/arff/ionosphere.arff |only
inst/arff/vote.arff |only
inst/doc/RWeka.pdf |binary
inst/java/RWeka.jar |binary
9 files changed, 214 insertions(+), 207 deletions(-)