Title: Tableplot, a visualization of large statistical datasets
Diff between tabplot versions 0.9-1 dated 2011-01-25 and 0.10 dated 2011-07-29
Description: A tableplot is a visualisation of a (large) statistical
dataset with a dozen of variables, both both numeric and
categorical. Each column represents a variable and each row bin
is an aggregate of a certain number of records. Numeric
variables are visualized as bar charts, and categorical
variables as stacked bar charts. Missing values are taken into
account. A GUI has been implemented which is used to easily
customize the tableplot. Also supports large ffdf datasets from
the ff package.
Author: Martijn Tennekes and Edwin de Jonge
Maintainer: Martijn Tennekes
tabplot-0.10/tabplot/DESCRIPTION | 20
tabplot-0.10/tabplot/NAMESPACE | 17
tabplot-0.10/tabplot/R/brokenX.R | 2
tabplot-0.10/tabplot/R/cellplot.R |only
tabplot-0.10/tabplot/R/changeTabplot.R |only
tabplot-0.10/tabplot/R/columnsPlot.R |only
tabplot-0.10/tabplot/R/datetime2fac.R |only
tabplot-0.10/tabplot/R/generalFunctions.R |only
tabplot-0.10/tabplot/R/getFreqTable_DT.R |only
tabplot-0.10/tabplot/R/isTabplotUsable.R |only
tabplot-0.10/tabplot/R/num2fac.R | 22
tabplot-0.10/tabplot/R/onLoad.R |only
tabplot-0.10/tabplot/R/pkg.R |only
tabplot-0.10/tabplot/R/plotCatCol.R |only
tabplot-0.10/tabplot/R/plotColumns.R |only
tabplot-0.10/tabplot/R/plotNumCol.R |only
tabplot-0.10/tabplot/R/plot_tabplot.r |only
tabplot-0.10/tabplot/R/preprocess.data.table.R |only
tabplot-0.10/tabplot/R/preprocess.ffdf.R | 149 +--
tabplot-0.10/tabplot/R/summary_tabplot.R |only
tabplot-0.10/tabplot/R/tableGUI.R | 931 ++-------------------
tabplot-0.10/tabplot/R/tableGUI_functions.R |only
tabplot-0.10/tabplot/R/tableGUI_main_handlers.R |only
tabplot-0.10/tabplot/R/tableGUI_main_layout.R |only
tabplot-0.10/tabplot/R/tableGUI_n2f_handlers.r |only
tabplot-0.10/tabplot/R/tableGUI_n2f_layout.R |only
tabplot-0.10/tabplot/R/tableGUI_pal_functions.R |only
tabplot-0.10/tabplot/R/tableGUI_pal_handlers.R |only
tabplot-0.10/tabplot/R/tableGUI_pal_layout.r |only
tabplot-0.10/tabplot/R/tableplot.R | 129 +-
tabplot-0.10/tabplot/R/tableplot_checkBins.R |only
tabplot-0.10/tabplot/R/tableplot_checkDecreasing.R |only
tabplot-0.10/tabplot/R/tableplot_checkFromTo.R |only
tabplot-0.10/tabplot/R/tableplot_checkPals.R |only
tabplot-0.10/tabplot/R/tableplot_checkScales.R |only
tabplot-0.10/tabplot/R/tableplot_checktCols.R |only
tabplot-0.10/tabplot/R/tableplot_showPalettes.R |only
tabplot-0.10/tabplot/R/tabplotPalettes.R |only
tabplot-0.10/tabplot/R/tabplot_object.R |only
tabplot-0.10/tabplot/data |only
tabplot-0.10/tabplot/demo/ffdf.R | 2
tabplot-0.10/tabplot/demo/tableGUI.R | 3
tabplot-0.10/tabplot/demo/tableplot.R | 27
tabplot-0.10/tabplot/inst |only
tabplot-0.10/tabplot/man/changeTabplot.Rd |only
tabplot-0.10/tabplot/man/datetime2fac.Rd |only
tabplot-0.10/tabplot/man/num2fac.Rd | 63 -
tabplot-0.10/tabplot/man/plot.tabplot.Rd |only
tabplot-0.10/tabplot/man/summary.tabplot.Rd |only
tabplot-0.10/tabplot/man/tableGUI.Rd | 30
tabplot-0.10/tabplot/man/tableplot.Rd | 100 --
tabplot-0.10/tabplot/man/tableplot_showPalettes.Rd |only
tabplot-0.10/tabplot/man/tabplot-object.Rd |only
tabplot-0.10/tabplot/man/tabplot-package.Rd | 53 -
tabplot-0.10/tabplot/man/tabplotPalettes.Rd |only
tabplot-0.9-1/tabplot/R/plotTable.R |only
tabplot-0.9-1/tabplot/R/preprocess.data.frame.R |only
57 files changed, 440 insertions(+), 1108 deletions(-)
Title: Tools for splitting, applying and combining data
Diff between plyr versions 1.5.2 dated 2011-04-24 and 1.6 dated 2011-07-29
Description: plyr is a set of tools that solves a common set of
problems: you need to break a big problem down into manageable
pieces, operate on each pieces and then put all the pieces back
together. For example, you might want to fit a model to each
spatial location or time point in your study, summarise data by
panels or collapse high-dimensional arrays to simpler summary
statistics. The development of plyr has been generously
supported by BD (Becton Dickinson).
Author: Hadley Wickham
Maintainer: Hadley Wickham
plyr-1.5.2/plyr/inst/doc |only
plyr-1.5.2/plyr/man/data-baseball.rd |only
plyr-1.5.2/plyr/man/data-ozone.rd |only
plyr-1.6/plyr/DESCRIPTION | 8 -
plyr-1.6/plyr/NAMESPACE | 133 +++++++++++++++-------------
plyr-1.6/plyr/NEWS | 19 ++++
plyr-1.6/plyr/R/data.r |only
plyr-1.6/plyr/R/dimensions.r | 4
plyr-1.6/plyr/R/helper-arrange.r | 6 +
plyr-1.6/plyr/R/helper-col-wise.r | 2
plyr-1.6/plyr/R/helper-defaults.r | 1
plyr-1.6/plyr/R/helper-each.r | 9 -
plyr-1.6/plyr/R/helper-try.r | 1
plyr-1.6/plyr/R/immutable.r | 4
plyr-1.6/plyr/R/indexed-array.r | 4
plyr-1.6/plyr/R/indexed-data-frame.r | 4
plyr-1.6/plyr/R/indexed.r | 5 +
plyr-1.6/plyr/R/join.r | 4
plyr-1.6/plyr/R/loop-apply.r | 1
plyr-1.6/plyr/R/ply-array.r | 114 ++++++++----------------
plyr-1.6/plyr/R/ply-data-frame.r | 103 ++++-----------------
plyr-1.6/plyr/R/ply-list.r | 99 +++++---------------
plyr-1.6/plyr/R/ply-mapply.r | 3
plyr-1.6/plyr/R/ply-null.r | 3
plyr-1.6/plyr/R/ply-replicate.r | 6 +
plyr-1.6/plyr/R/progress.r | 17 ++-
plyr-1.6/plyr/R/quote.r | 42 +++++---
plyr-1.6/plyr/R/rbind-matrix.r | 1
plyr-1.6/plyr/R/rbind.r | 13 +-
plyr-1.6/plyr/R/simplify-array.r | 2
plyr-1.6/plyr/R/simplify-data-frame.r | 3
plyr-1.6/plyr/R/simplify-vector.r | 2
plyr-1.6/plyr/R/split-array.r | 2
plyr-1.6/plyr/R/split-data-frame.r | 3
plyr-1.6/plyr/R/split-indices.r | 1
plyr-1.6/plyr/R/split.r | 9 +
plyr-1.6/plyr/R/utils.r | 5 +
plyr-1.6/plyr/inst/tests/test-empty.r | 2
plyr-1.6/plyr/inst/tests/test-rbind.r | 30 +++++-
plyr-1.6/plyr/inst/tests/test-replicate.r |only
plyr-1.6/plyr/man-roxygen |only
plyr-1.6/plyr/man/a_ply.Rd | 52 ++++++----
plyr-1.6/plyr/man/aaply.Rd | 112 ++++++++++++++---------
plyr-1.6/plyr/man/adply.Rd | 89 ++++++++++++------
plyr-1.6/plyr/man/alply.Rd | 94 ++++++++++++-------
plyr-1.6/plyr/man/amv_dim.Rd | 13 +-
plyr-1.6/plyr/man/amv_dimnames.Rd | 16 +--
plyr-1.6/plyr/man/arrange.Rd | 27 ++---
plyr-1.6/plyr/man/as.data.frame.function.Rd | 30 +++---
plyr-1.6/plyr/man/as.list.split.Rd | 15 +--
plyr-1.6/plyr/man/as.quoted.Rd | 44 ++++-----
plyr-1.6/plyr/man/baseball.Rd |only
plyr-1.6/plyr/man/colwise.Rd | 40 ++++----
plyr-1.6/plyr/man/compact.Rd | 14 +-
plyr-1.6/plyr/man/count.Rd | 39 ++++----
plyr-1.6/plyr/man/create_progress_bar.Rd | 33 ++++--
plyr-1.6/plyr/man/d_ply.Rd | 40 +++++---
plyr-1.6/plyr/man/daply.Rd | 92 ++++++++++++-------
plyr-1.6/plyr/man/ddply.Rd | 93 ++++++++++++-------
plyr-1.6/plyr/man/defaults.Rd | 15 +--
plyr-1.6/plyr/man/desc.Rd | 24 ++---
plyr-1.6/plyr/man/dims.Rd | 13 +-
plyr-1.6/plyr/man/dlply.Rd | 84 +++++++++++------
plyr-1.6/plyr/man/each.Rd | 29 ++----
plyr-1.6/plyr/man/empty.Rd | 13 +-
plyr-1.6/plyr/man/eval.quoted.Rd | 22 ++--
plyr-1.6/plyr/man/failwith.Rd | 34 ++++---
plyr-1.6/plyr/man/get-split.Rd | 18 +--
plyr-1.6/plyr/man/id.Rd | 32 +++---
plyr-1.6/plyr/man/id_var.Rd | 6 -
plyr-1.6/plyr/man/idata.frame.Rd | 29 +++---
plyr-1.6/plyr/man/indexed_array.Rd | 23 ++--
plyr-1.6/plyr/man/indexed_df.Rd | 27 ++---
plyr-1.6/plyr/man/is.discrete.Rd | 19 ++--
plyr-1.6/plyr/man/is.formula.Rd | 9 +
plyr-1.6/plyr/man/isplit2.Rd | 6 -
plyr-1.6/plyr/man/join.Rd | 45 +++++----
plyr-1.6/plyr/man/join.keys.Rd | 19 ++--
plyr-1.6/plyr/man/l_ply.Rd | 38 +++++---
plyr-1.6/plyr/man/laply.Rd | 87 +++++++++++-------
plyr-1.6/plyr/man/ldply.Rd | 69 +++++++++-----
plyr-1.6/plyr/man/liply.Rd | 28 +++--
plyr-1.6/plyr/man/list_to_array.Rd | 26 +++--
plyr-1.6/plyr/man/list_to_dataframe.Rd | 25 +++--
plyr-1.6/plyr/man/list_to_vector.Rd | 18 ++-
plyr-1.6/plyr/man/llply.Rd | 85 ++++++++++-------
plyr-1.6/plyr/man/loop_apply.Rd | 20 ++--
plyr-1.6/plyr/man/m_ply.Rd | 43 +++++----
plyr-1.6/plyr/man/maply.Rd | 64 ++++++++-----
plyr-1.6/plyr/man/match_df.Rd | 35 ++++---
plyr-1.6/plyr/man/mdply.Rd | 62 +++++++------
plyr-1.6/plyr/man/mlply.Rd | 62 ++++++++-----
plyr-1.6/plyr/man/mutate.Rd | 39 ++++----
plyr-1.6/plyr/man/names.quoted.Rd | 15 +--
plyr-1.6/plyr/man/nunique.Rd | 14 +-
plyr-1.6/plyr/man/ozone.Rd |only
plyr-1.6/plyr/man/print.quoted.Rd | 9 +
plyr-1.6/plyr/man/print.split.Rd | 14 +-
plyr-1.6/plyr/man/progress_none.Rd | 15 ++-
plyr-1.6/plyr/man/progress_text.Rd | 26 +++--
plyr-1.6/plyr/man/progress_tk.Rd | 36 +++++--
plyr-1.6/plyr/man/progress_win.Rd | 32 ++++--
plyr-1.6/plyr/man/quickdf.Rd | 16 +--
plyr-1.6/plyr/man/quoted.Rd | 53 ++++++-----
plyr-1.6/plyr/man/r_ply.Rd | 41 +++++---
plyr-1.6/plyr/man/raply.Rd | 46 ++++++---
plyr-1.6/plyr/man/rbind.fill.Rd | 31 ++++--
plyr-1.6/plyr/man/rbind.fill.matrix.Rd | 43 +++++----
plyr-1.6/plyr/man/rdply.Rd | 39 +++++---
plyr-1.6/plyr/man/reduce_dim.Rd | 12 +-
plyr-1.6/plyr/man/rename.Rd | 21 ++--
plyr-1.6/plyr/man/rlply.Rd | 37 ++++---
plyr-1.6/plyr/man/round_any.Rd | 24 +++--
plyr-1.6/plyr/man/splat.Rd | 29 +++---
plyr-1.6/plyr/man/split_indices.Rd | 20 ++--
plyr-1.6/plyr/man/split_labels.Rd | 19 ++--
plyr-1.6/plyr/man/splitter_a.Rd | 46 ++++++---
plyr-1.6/plyr/man/splitter_d.Rd | 41 +++++---
plyr-1.6/plyr/man/strip_splits.Rd | 20 ++--
plyr-1.6/plyr/man/summarise.Rd | 35 +++----
plyr-1.6/plyr/man/true.Rd | 20 ++--
plyr-1.6/plyr/man/try_default.Rd | 31 +++---
plyr-1.6/plyr/man/tryapply.Rd | 9 +
plyr-1.6/plyr/man/unrowname.Rd | 12 +-
plyr-1.6/plyr/man/vaggregate.Rd | 43 +++++----
125 files changed, 2045 insertions(+), 1480 deletions(-)
Title: A replacement and extension of the optim() function
Diff between optimx versions 2011-2.27 dated 2011-03-01 and 2011-2.29 dated 2011-07-29
Description: Provides a replacement and extension of the optim()
function to unify and streamline optimization capabilities in R
for smooth, possibly box constrained functions of several or
many parameters
Author: John C Nash
Maintainer: John C Nash
DESCRIPTION | 8 ++++----
R/optimx.R | 3 ++-
2 files changed, 6 insertions(+), 5 deletions(-)
Title: R Interface to C API of COIN-OR Clp
Diff between clpAPI versions 1.1.5 dated 2011-07-28 and 1.1.6 dated 2011-07-29
Description: R Interface to C API of COIN-OR Clp, depends on COIN-OR
Clp Version >= 1.12.0
Author: Gabriel Gelius-Dietrich
Maintainer: Gabriel Gelius-Dietrich
DESCRIPTION | 8 ++++----
NEWS | 10 +++++++++-
configure | 22 +++++++++++-----------
configure.ac | 6 +++---
man/clpAPI-package.Rd | 4 ++--
src/Makevars.win | 2 +-
6 files changed, 30 insertions(+), 22 deletions(-)
More information about SpatioTemporal at CRAN
Permanent link
Title: Estimation, simulation and visualization of Hierarchical
Archimedean Copulae (HAC)
Diff between HAC versions 0.1-0 dated 2011-07-23 and 0.1-1 dated 2011-07-29
Description: Package provides the estimation of the structure and the
parameters, simulation methods and structural plots of
high-dimensional Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin
Maintainer: Ostap Okhrin
HAC-0.1-0/HAC/COPYING |only
HAC-0.1-1/HAC/DESCRIPTION | 23 ++++++++---------------
HAC-0.1-1/HAC/R/copula_plot.r | 6 +++---
3 files changed, 11 insertions(+), 18 deletions(-)
Title: Distance and Similarity Measures
Diff between proxy versions 0.4-6 dated 2010-02-06 and 0.4-7 dated 2011-07-29
Description: Provides an extensible framework for the effcient
calculation of auto- and cross-proximities, along with
implementations of the most popular ones.
Author: David Meyer and Christian Buchta
Maintainer: David Meyer
DESCRIPTION | 8 ++++----
NEWS | 5 +++++
R/database.R | 4 +++-
R/dist.R | 5 ++++-
inst/NEWS | 5 +++++
inst/doc/overview.pdf |binary
man/dist.Rd | 2 +-
7 files changed, 22 insertions(+), 7 deletions(-)
Title: Misc Functions of the Department of Statistics (e1071), TU Wien
Diff between e1071 versions 1.5-26 dated 2011-05-22 and 1.5-27 dated 2011-07-29
Description: Functions for latent class analysis, short time Fourier
transform, fuzzy clustering, support vector machines, shortest
path computation, bagged clustering, naive Bayes classifier,
...
Author: Evgenia Dimitriadou, Kurt Hornik, Friedrich Leisch, David
Meyer, and Andreas Weingessel
Maintainer: Friedrich Leisch
e1071-1.5-26/e1071/COPYING |only
e1071-1.5-27/e1071/DESCRIPTION | 8 ++++----
e1071-1.5-27/e1071/NEWS | 4 ++++
e1071-1.5-27/e1071/R/svm.R | 2 ++
e1071-1.5-27/e1071/README | 5 +++--
e1071-1.5-27/e1071/inst/doc/svmdoc.pdf |binary
e1071-1.5-27/e1071/man/svm.Rd | 4 +++-
e1071-1.5-27/e1071/src/Rsvm.c | 4 ++++
8 files changed, 20 insertions(+), 7 deletions(-)
Title: A Laboratory for Recursive Partytioning
Diff between party versions 0.9-99992 dated 2011-05-02 and 0.9-99993 dated 2011-07-29
Description: A computational toolbox for recursive partitioning. The
core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems,
including nominal, ordinal, numeric, censored as well as
multivariate response variables and arbitrary measurement
scales of the covariates. Based on conditional inference trees,
cforest() provides an implementation of Breiman's random
forests. The function mob() implements an algorithm for
recursive partitioning based on parametric models (e.g. linear
models, GLMs or survival regression) employing parameter
instability tests for split selection. Extensible functionality
for visualizing tree-structured regression models is available.
Author: Torsten Hothorn, Kurt Hornik, Carolin Strobl and Achim Zeileis
Maintainer: Torsten Hothorn
DESCRIPTION | 8
NEWS | 4
R/Plot.R | 2
R/Utils.R | 4
data/mammoexp.rda |binary
inst/doc/.build.timestamp |only
inst/doc/MOB.pdf |binary
inst/doc/MOB.tex |only
inst/doc/party.pdf |binary
inst/documentation/html/Classes_8c.html | 50
inst/documentation/html/Classes_8c_source.html | 2
inst/documentation/html/Classes_8h.html | 50
inst/documentation/html/Classes_8h_source.html | 2
inst/documentation/html/Convenience_8c.html | 10
inst/documentation/html/Convenience_8c_af39bdd14f23726fdd6bf74888ffbf920_cgraph.map | 6
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inst/documentation/html/Distributions_8c.html | 6
inst/documentation/html/Distributions_8c_source.html | 2
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inst/documentation/html/Distributions_8h_source.html | 2
inst/documentation/html/IndependenceTest_8c.html | 18
inst/documentation/html/IndependenceTest_8c_a3b7d8664edac79abe6c4f528ad2c4f35_cgraph.map | 2
inst/documentation/html/IndependenceTest_8c_a3b7d8664edac79abe6c4f528ad2c4f35_cgraph.md5 | 2
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inst/documentation/html/IndependenceTest_8c_aaab8e2db15687b6b95f802dd1719ed54_cgraph.map | 2
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inst/documentation/html/IndependenceTest_8c_aaab8e2db15687b6b95f802dd1719ed54_cgraph.png |binary
inst/documentation/html/IndependenceTest_8c_ae64c8d91a58113cee43788dc1663d645_cgraph.map | 2
inst/documentation/html/IndependenceTest_8c_ae64c8d91a58113cee43788dc1663d645_cgraph.md5 | 2
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inst/documentation/html/IndependenceTest_8c_af80dcff3dd9196b9f861fd83f4efa8ac_cgraph.map | 2
inst/documentation/html/IndependenceTest_8c_af80dcff3dd9196b9f861fd83f4efa8ac_cgraph.md5 | 2
inst/documentation/html/IndependenceTest_8c_af80dcff3dd9196b9f861fd83f4efa8ac_cgraph.png |binary
inst/documentation/html/IndependenceTest_8c_source.html | 297 +--
inst/documentation/html/IndependenceTest_8h.html | 8
inst/documentation/html/IndependenceTest_8h_a84abb46c73e74364113fb61590f8faa0_cgraph.map | 2
inst/documentation/html/IndependenceTest_8h_a84abb46c73e74364113fb61590f8faa0_cgraph.md5 | 2
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inst/documentation/html/IndependenceTest_8h_source.html | 2
inst/documentation/html/LinearStatistic_8c.html | 32
inst/documentation/html/LinearStatistic_8c_source.html | 630 +++---
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inst/documentation/html/LinearStatistic_8h_source.html | 2
inst/documentation/html/Node_8c.html | 10
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inst/documentation/html/Splits_8c_a7bda94db4217f68594d347d4498576a6_cgraph.map | 10
inst/documentation/html/Splits_8c_a7bda94db4217f68594d347d4498576a6_cgraph.md5 | 2
inst/documentation/html/Splits_8c_a7bda94db4217f68594d347d4498576a6_cgraph.png |binary
inst/documentation/html/Splits_8c_source.html | 210 +-
inst/documentation/html/Splits_8h.html | 8
inst/documentation/html/Splits_8h_a1b9f04a865d61c1c9757ba77bff49ab7_cgraph.map | 4
inst/documentation/html/Splits_8h_a1b9f04a865d61c1c9757ba77bff49ab7_cgraph.md5 | 2
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inst/documentation/html/Splits_8h_source.html | 2
inst/documentation/html/SurrogateSplits_8c.html | 8
inst/documentation/html/SurrogateSplits_8c_a6f9f8c3b4147854cacc43d67a055d911_cgraph.map | 19
inst/documentation/html/SurrogateSplits_8c_a6f9f8c3b4147854cacc43d67a055d911_cgraph.md5 | 2
inst/documentation/html/SurrogateSplits_8c_a6f9f8c3b4147854cacc43d67a055d911_cgraph.png |binary
inst/documentation/html/SurrogateSplits_8c_source.html | 123 -
inst/documentation/html/SurrogateSplits_8h.html | 8
inst/documentation/html/SurrogateSplits_8h_a6f9f8c3b4147854cacc43d67a055d911_cgraph.map | 19
inst/documentation/html/SurrogateSplits_8h_a6f9f8c3b4147854cacc43d67a055d911_cgraph.md5 | 2
inst/documentation/html/SurrogateSplits_8h_a6f9f8c3b4147854cacc43d67a055d911_cgraph.png |binary
inst/documentation/html/SurrogateSplits_8h_source.html | 2
inst/documentation/html/TestStatistic_8c.html | 8
inst/documentation/html/TestStatistic_8c_source.html | 2
inst/documentation/html/TestStatistic_8h.html | 6
inst/documentation/html/TestStatistic_8h_source.html | 2
inst/documentation/html/TreeGrow_8c.html | 8
inst/documentation/html/TreeGrow_8c_a67d352c38f59d30c7b9954bf5d3a57ad_cgraph.map | 98 -
inst/documentation/html/TreeGrow_8c_a67d352c38f59d30c7b9954bf5d3a57ad_cgraph.md5 | 2
inst/documentation/html/TreeGrow_8c_a67d352c38f59d30c7b9954bf5d3a57ad_cgraph.png |binary
inst/documentation/html/TreeGrow_8c_af9fe6e74563480c8eb5e4332fe9bca22_cgraph.map | 98 -
inst/documentation/html/TreeGrow_8c_af9fe6e74563480c8eb5e4332fe9bca22_cgraph.md5 | 2
inst/documentation/html/TreeGrow_8c_af9fe6e74563480c8eb5e4332fe9bca22_cgraph.png |binary
inst/documentation/html/TreeGrow_8c_source.html | 2
inst/documentation/html/TreeGrow_8h.html | 4
inst/documentation/html/TreeGrow_8h_a67d352c38f59d30c7b9954bf5d3a57ad_cgraph.map | 98 -
inst/documentation/html/TreeGrow_8h_a67d352c38f59d30c7b9954bf5d3a57ad_cgraph.md5 | 2
inst/documentation/html/TreeGrow_8h_a67d352c38f59d30c7b9954bf5d3a57ad_cgraph.png |binary
inst/documentation/html/TreeGrow_8h_source.html | 2
inst/documentation/html/Utils_8c.html | 265 +-
inst/documentation/html/Utils_8c_a46c7a1ff234b36c5417eea8a0a93464c_cgraph.map |only
inst/documentation/html/Utils_8c_a46c7a1ff234b36c5417eea8a0a93464c_cgraph.md5 |only
inst/documentation/html/Utils_8c_a46c7a1ff234b36c5417eea8a0a93464c_cgraph.png |only
inst/documentation/html/Utils_8c_a7d7d78de793f6a7b6fd0e2a4f8435908_cgraph.map |only
inst/documentation/html/Utils_8c_a7d7d78de793f6a7b6fd0e2a4f8435908_cgraph.md5 |only
inst/documentation/html/Utils_8c_a7d7d78de793f6a7b6fd0e2a4f8435908_cgraph.png |only
inst/documentation/html/Utils_8c_a9aa84c21406d338bd7116cbe9444ea3c_cgraph.map | 6
inst/documentation/html/Utils_8c_a9aa84c21406d338bd7116cbe9444ea3c_cgraph.md5 | 2
inst/documentation/html/Utils_8c_a9aa84c21406d338bd7116cbe9444ea3c_cgraph.png |binary
inst/documentation/html/Utils_8c_ac0d5c2fe971923d7a1b1869dffabddb1_cgraph.map | 6
inst/documentation/html/Utils_8c_ac0d5c2fe971923d7a1b1869dffabddb1_cgraph.md5 | 2
inst/documentation/html/Utils_8c_ac0d5c2fe971923d7a1b1869dffabddb1_cgraph.png |binary
inst/documentation/html/Utils_8c_source.html | 912 +++++-----
inst/documentation/html/Utils_8h.html | 122 -
inst/documentation/html/Utils_8h_ac0d5c2fe971923d7a1b1869dffabddb1_cgraph.map | 6
inst/documentation/html/Utils_8h_ac0d5c2fe971923d7a1b1869dffabddb1_cgraph.md5 | 2
inst/documentation/html/Utils_8h_ac0d5c2fe971923d7a1b1869dffabddb1_cgraph.png |binary
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inst/documentation/html/dir_91a45675702750ac58701b43283f1e46.html | 2
inst/documentation/html/dirs.html | 2
inst/documentation/html/files.html | 2
inst/documentation/html/globals.html | 3
inst/documentation/html/globals_0x62.html | 3
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inst/documentation/html/globals_0x67.html | 3
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inst/documentation/html/globals_0x75.html | 3
inst/documentation/html/globals_defs.html | 2
inst/documentation/html/globals_func.html | 17
inst/documentation/html/globals_func_0x67.html | 3
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inst/documentation/html/globals_func_0x69.html | 3
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inst/documentation/html/globals_func_0x70.html | 3
inst/documentation/html/globals_func_0x72.html | 6
inst/documentation/html/globals_func_0x73.html | 3
inst/documentation/html/globals_func_0x75.html | 3
inst/documentation/html/globals_vars.html | 2
inst/documentation/html/graph_legend.html | 2
inst/documentation/html/main.html | 2
inst/documentation/html/mvt_8f.html | 2
inst/documentation/html/mvt_8f_source.html | 2
inst/documentation/html/mvt_8h.html | 2
inst/documentation/html/mvt_8h_source.html | 2
inst/documentation/html/pages.html | 2
inst/documentation/html/party_8h.html | 10
inst/documentation/html/party_8h_source.html | 2
inst/documentation/html/todo.html | 2
src/IndependenceTest.c | 9
src/LinearStatistic.c | 8
src/Node.c | 4
src/Predict.c | 14
src/Splits.c | 6
src/SurrogateSplits.c | 5
src/Utils.c | 26
src/Utils.h | 4
tests/Splits-regtest.R | 3
tests/Splits-regtest.Rout.save | 3
187 files changed, 2102 insertions(+), 2129 deletions(-)
Title: R interface to NLopt
Diff between nloptr versions 0.8.2 dated 2011-06-22 and 0.8.3 dated 2011-07-29
Description: nloptr is an R interface to NLopt. NLopt is a
free/open-source library for nonlinear optimization, providing
a common interface for a number of different free optimization
routines available online as well as original implementations
of various other algorithms. See
http://ab-initio.mit.edu/wiki/index.php/NLopt_Introduction for
more information on the available algorithms.
Author: Jelmer Ypma
Maintainer: Jelmer Ypma
nloptr-0.8.2/nloptr/COPYING |only
nloptr-0.8.2/nloptr/COPYING.LESSER |only
nloptr-0.8.3/nloptr/DESCRIPTION | 10 +--
nloptr-0.8.3/nloptr/INSTALL.windows |only
nloptr-0.8.3/nloptr/LICENSE |only
nloptr-0.8.3/nloptr/NAMESPACE | 2
nloptr-0.8.3/nloptr/R/check.derivatives.R |only
nloptr-0.8.3/nloptr/R/finite.diff.R |only
nloptr-0.8.3/nloptr/R/nloptr.R | 77 ++++++++++++++++++++++++-
nloptr-0.8.3/nloptr/inst/doc/nloptr.Rnw | 8 +-
nloptr-0.8.3/nloptr/inst/doc/nloptr.pdf |binary
nloptr-0.8.3/nloptr/man/check.derivatives.Rd |only
nloptr-0.8.3/nloptr/man/nloptr.Rd | 8 +-
nloptr-0.8.3/nloptr/src/Makevars | 30 +++++----
nloptr-0.8.3/nloptr/src/nloptr.c | 54 +++++++++++++----
nloptr-0.8.3/nloptr/tests/derivative_checker.R |only
nloptr-0.8.3/nloptr/tests/example.R | 4 -
17 files changed, 153 insertions(+), 40 deletions(-)
Title: Multivariate Dependence Modeling with Vines
Diff between vines versions 1.0.1 dated 2011-05-24 and 1.0.3 dated 2011-07-29
Description: Vines are graphical models for pair-copula constructions
that allow building high-dimensional distributions using
bivariate copulas and marginal density functions. This package
contains S4 classes for vines (C-vines and D-vines) and methods
for inference, goodness-of-fit tests, density evaluation,
distribution function evaluation, and simulation.
Author: Yasser González-Fernández
Maintainer: Yasser González-Fernández
vines-1.0.1/vines/COPYING |only
vines-1.0.3/vines/DESCRIPTION | 18 +++++++++---------
vines-1.0.3/vines/NEWS | 8 ++++++++
vines-1.0.3/vines/R/Vine.R | 4 ++--
vines-1.0.3/vines/R/dimnames.R | 4 ++--
vines-1.0.3/vines/R/dvine.R | 7 +++----
vines-1.0.3/vines/R/h.R | 4 ++--
vines-1.0.3/vines/R/hinverse.R | 6 +++---
vines-1.0.3/vines/R/pvine.R | 4 ++--
vines-1.0.3/vines/R/rvine.R | 8 ++++----
vines-1.0.3/vines/R/show.R | 4 ++--
vines-1.0.3/vines/R/vineFit.R | 4 ++--
vines-1.0.3/vines/R/vineFitML.R | 6 +++---
vines-1.0.3/vines/R/vineGoF.R | 4 ++--
vines-1.0.3/vines/R/vineIter.R | 10 +++++-----
vines-1.0.3/vines/R/vineOrder.R | 6 +++---
vines-1.0.3/vines/R/vinePIT.R | 4 ++--
vines-1.0.3/vines/R/vineParameters.R | 4 ++--
vines-1.0.3/vines/inst/CITATION | 4 ++--
vines-1.0.3/vines/man/CVine-class.Rd | 2 +-
vines-1.0.3/vines/man/DVine-class.Rd | 2 +-
vines-1.0.3/vines/man/RVine-class.Rd | 2 +-
vines-1.0.3/vines/man/Vine-class.Rd | 2 +-
vines-1.0.3/vines/man/h-methods.Rd | 22 +++++++++++-----------
vines-1.0.3/vines/man/hinverse-methods.Rd | 8 ++++----
vines-1.0.3/vines/man/vineFit.Rd | 4 ++--
vines-1.0.3/vines/man/vineOrder.Rd | 4 ++--
vines-1.0.3/vines/src/h.c | 4 ++--
vines-1.0.3/vines/src/h.h | 4 ++--
vines-1.0.3/vines/src/hinverse.c | 4 ++--
vines-1.0.3/vines/src/hinverse.h | 4 ++--
vines-1.0.3/vines/src/register.c | 4 ++--
vines-1.0.3/vines/tests/hfunctions.R | 13 +++++--------
33 files changed, 96 insertions(+), 92 deletions(-)
Title: classes and methods for spatio-temporal data
Diff between spacetime versions 0.5-1 dated 2011-07-23 and 0.5-2 dated 2011-07-29
Description: A package with classes and methods for spatio-temporal
data. In particular, space-time regular lattices, sparse
lattices, and irregular data are supported, with limited
support for trajectories, but not for topologies with S/T
interactions such as space-time prisms. Utility functions are
provided for plotting data as map sequences (lattice or
animation) or multiple time series; for spatial and temporal
selection, as well as methods for retrieving coordinates, for
subsetting, print, summary, etc.
Author: Edzer Pebesma, with contributions by Benedict Graeler and Tom
Gottfried
Maintainer: Edzer Pebesma
DESCRIPTION | 21 +++++++++++----------
R/STSDF-methods.R | 2 +-
R/coerce.R | 5 +++++
R/stplot.R | 8 ++++----
data/air.rda |binary
demo/CressieWikle.R | 17 +++++++----------
inst/doc/spacetime.Rnw | 4 +++-
inst/doc/spacetime.pdf |binary
inst/doc/sto.pdf |binary
inst/doc/stpg.pdf |binary
man/over.Rd | 6 ++++--
man/unstack.Rd | 14 +++++++-------
12 files changed, 42 insertions(+), 35 deletions(-)
Title: In-source documentation for R
Diff between roxygen2 versions 2.0 dated 2011-07-23 and 2.1 dated 2011-07-29
Description: A Doxygen-like in-source documentation system for Rd,
collation, and NAMESPACE.
Author: Hadley Wickham
Maintainer: Hadley Wickham
DESCRIPTION | 6 +++---
NAMESPACE | 1 +
NEWS | 30 ++++++++++++++++++++++++++++++
R/parse-srcref.R | 2 +-
R/rd-file-api.R | 4 ++--
R/rd-tag-api.R | 4 +++-
R/roclet-collate.R | 16 ++++++++--------
R/roclet-namespace.R | 2 +-
R/roclet-rd.R | 5 +++--
R/roxygenize.R | 14 +++++++++++---
README.md | 16 ++++++++--------
inst/tests/Rd-example-3.R |only
inst/tests/test-had.R | 32 +++++++++++++++++++++++++++++++-
man/roxygenize.Rd | 2 +-
14 files changed, 103 insertions(+), 31 deletions(-)
Title: Profile Output Processing Tools for R
Diff between proftools versions 0.0-3 dated 2010-07-30 and 0.0-4 dated 2011-07-29
Description: Tools for examining Rprof profile output.
Author: Luke Tierney
Maintainer: Luke Tierney
DESCRIPTION | 6 +++---
R/proftools.R | 8 ++++----
2 files changed, 7 insertions(+), 7 deletions(-)
Title: Robust PCA by Projection Pursuit
Diff between pcaPP versions 1.9-3 dated 2011-06-20 and 1.9-41 dated 2011-07-29
Description: Robust PCA by Projection Pursuit
Author: Peter Filzmoser, Heinrich Fritz, Klaudius Kalcher
Maintainer: Heinrich Fritz
pcaPP-1.9-3/pcaPP/src/L1Median.HoCr.cpp |only
pcaPP-1.9-3/pcaPP/src/L1Median.VardiZhang.cpp |only
pcaPP-1.9-3/pcaPP/src/R.meal.cpp |only
pcaPP-1.9-3/pcaPP/src/R.meal.h |only
pcaPP-1.9-3/pcaPP/src/package.cpp |only
pcaPP-1.9-3/pcaPP/src/package.h |only
pcaPP-1.9-41/pcaPP/DESCRIPTION | 6
pcaPP-1.9-41/pcaPP/src/L1Median.h | 7 -
pcaPP-1.9-41/pcaPP/src/L1Median_HoCr.cpp |only
pcaPP-1.9-41/pcaPP/src/L1Median_VardiZhang.cpp |only
pcaPP-1.9-41/pcaPP/src/ML_package.cpp |only
pcaPP-1.9-41/pcaPP/src/ML_package.h |only
pcaPP-1.9-41/pcaPP/src/Makevars | 4
pcaPP-1.9-41/pcaPP/src/PCAproj.cpp | 96 ++++++++++----
pcaPP-1.9-41/pcaPP/src/R_meal.cpp |only
pcaPP-1.9-41/pcaPP/src/R_meal.h |only
pcaPP-1.9-41/pcaPP/src/R_meal_BLAS.cpp |only
pcaPP-1.9-41/pcaPP/src/R_package.cpp |only
pcaPP-1.9-41/pcaPP/src/R_package.h |only
pcaPP-1.9-41/pcaPP/src/hess.cpp | 2
pcaPP-1.9-41/pcaPP/src/l1median.cpp | 13 +-
pcaPP-1.9-41/pcaPP/src/pcaPP.h | 3
pcaPP-1.9-41/pcaPP/src/smat.base.h | 100 +++++++++++++++
pcaPP-1.9-41/pcaPP/src/smat.cpp | 35 ++++-
pcaPP-1.9-41/pcaPP/src/smat.def.h | 2
pcaPP-1.9-41/pcaPP/src/smat.elop.h | 162 ++++++++++++++++++++++++-
pcaPP-1.9-41/pcaPP/src/smat.h | 1
pcaPP-1.9-41/pcaPP/src/smat.matop.h | 4
pcaPP-1.9-41/pcaPP/src/smat.meal.h | 50 ++++++-
pcaPP-1.9-41/pcaPP/src/smat_meal_passrng.h |only
pcaPP-1.9-41/pcaPP/src/smat_meal_passrng_hpp.h |only
31 files changed, 425 insertions(+), 60 deletions(-)
Title: GLM model selection and multimodel inference made easy
Diff between glmulti versions 1.0.1 dated 2011-04-15 and 1.0.2 dated 2011-07-29
Description: Automated model selection and model-averaging. Provides a
wrapper for glm and similar functions, automatically generating
all possible models (under constraints set by the user) with
the specified response and explanatory variables, and finding
the best models in terms of some Information Criterion (AIC,
AICc or BIC). Can handle very large numbers of candidate
models. Features a Genetic Algorithm to find the best models
when an exhaustive screening of the candidates is not feasible.
Author: Vincent Calcagno
Maintainer: Vincent Calcagno
ChangeLog | 5 +
DESCRIPTION | 10 +--
R/glmulti.r | 126 ++++++++++++++++++++++++++++++++++++++++++++-----
man/getfit-methods.Rd | 6 ++
man/glmulti-methods.Rd | 5 +
man/glmulti.Rd | 1
6 files changed, 136 insertions(+), 17 deletions(-)
Title: Estimation of Distribution Algorithms Based on Copula Theory
Diff between copulaedas versions 1.0.1 dated 2011-05-24 and 1.0.3 dated 2011-07-29
Description: This package contains implementations of various classes
of Estimation of Distribution Algorithms (EDAs) based on copula
theory: Copula EDAs and Vine EDAs. In this package, EDAs are
implemented using S4 classes with generic functions for its
main parts: seeding, selection, learning, sampling,
replacement, local optimization, termination, and reporting.
The package also includes the implementation of a group of
well-known optimization test problems and utility functions to
study the behavior of EDAs.
Author: Yasser González-Fernández
Maintainer: Yasser González-Fernández
copulaedas-1.0.1/copulaedas/COPYING |only
copulaedas-1.0.3/copulaedas/DESCRIPTION | 16 +++----
copulaedas-1.0.3/copulaedas/NEWS | 8 +++
copulaedas-1.0.3/copulaedas/R/CEDA.R | 8 +--
copulaedas-1.0.3/copulaedas/R/EDA.R | 4 -
copulaedas-1.0.3/copulaedas/R/VEDA.R | 4 -
copulaedas-1.0.3/copulaedas/R/criticalPopSize.R | 4 -
copulaedas-1.0.3/copulaedas/R/functions.R | 4 -
copulaedas-1.0.3/copulaedas/R/indepRuns.R | 4 -
copulaedas-1.0.3/copulaedas/R/margins.R | 4 -
copulaedas-1.0.3/copulaedas/R/misc.R | 4 -
copulaedas-1.0.3/copulaedas/R/optimize.R | 4 -
copulaedas-1.0.3/copulaedas/R/replace.R | 4 -
copulaedas-1.0.3/copulaedas/R/report.R | 4 -
copulaedas-1.0.3/copulaedas/R/run.R | 4 -
copulaedas-1.0.3/copulaedas/R/seed.R | 4 -
copulaedas-1.0.3/copulaedas/R/select.R | 4 -
copulaedas-1.0.3/copulaedas/R/terminate.R | 4 -
copulaedas-1.0.3/copulaedas/inst/CITATION | 4 -
copulaedas-1.0.3/copulaedas/man/CEDA-class.Rd | 28 ++++++------
copulaedas-1.0.3/copulaedas/man/EDA-class.Rd | 2
copulaedas-1.0.3/copulaedas/man/VEDA-class.Rd | 41 ++++++++++--------
copulaedas-1.0.3/copulaedas/man/edaCriticalPopSize.Rd | 3 -
23 files changed, 88 insertions(+), 78 deletions(-)
Title: Convert Rd to roxygen documentation and utilities to improve
documentation
Diff between Rd2roxygen versions 0.1-8 dated 2011-02-17 and 1.0-0 dated 2011-07-29
Description: Functions to convert Rd to roxygen documentation. It can
parse an Rd file to a list, create the roxygen documentation
and update the original R script (e.g. the one containing the
definition of the function) accordingly. This package also
provides utilities which can help developers build packages
using roxygen more easily. The formatR package can be used to
reformat the R code in the examples sections so that the code
will be more readable.
Author: Hadley Wickham and Yihui Xie
Maintainer: Yihui Xie
Rd2roxygen-0.1-8/Rd2roxygen/man/rm_undocumented.Rd |only
Rd2roxygen-1.0-0/Rd2roxygen/.gitignore |only
Rd2roxygen-1.0-0/Rd2roxygen/DESCRIPTION | 20 -
Rd2roxygen-1.0-0/Rd2roxygen/NAMESPACE | 8
Rd2roxygen-1.0-0/Rd2roxygen/NEWS |only
Rd2roxygen-1.0-0/Rd2roxygen/R/Rd2roxygen-package.R | 6
Rd2roxygen-1.0-0/Rd2roxygen/R/rd2roxygen.R | 12
Rd2roxygen-1.0-0/Rd2roxygen/R/utils.R | 315 ++++++------------
Rd2roxygen-1.0-0/Rd2roxygen/README | 6
Rd2roxygen-1.0-0/Rd2roxygen/inst/doc/Rd2roxygen.Rnw | 296 ++++++++--------
Rd2roxygen-1.0-0/Rd2roxygen/inst/doc/Rd2roxygen.bib | 22 -
Rd2roxygen-1.0-0/Rd2roxygen/inst/doc/Rd2roxygen.lyx | 295 ++++++++--------
Rd2roxygen-1.0-0/Rd2roxygen/inst/doc/Rd2roxygen.pdf |binary
Rd2roxygen-1.0-0/Rd2roxygen/inst/doc/clean-up.R | 2
Rd2roxygen-1.0-0/Rd2roxygen/man/Rd2roxygen-package.Rd | 32 +
Rd2roxygen-1.0-0/Rd2roxygen/man/Rd2roxygen.Rd | 50 +-
Rd2roxygen-1.0-0/Rd2roxygen/man/create_roxygen.Rd | 39 +-
Rd2roxygen-1.0-0/Rd2roxygen/man/parse_and_save.Rd | 32 +
Rd2roxygen-1.0-0/Rd2roxygen/man/parse_file.Rd | 34 +
Rd2roxygen-1.0-0/Rd2roxygen/man/reformat_code.Rd | 82 ++--
Rd2roxygen-1.0-0/Rd2roxygen/man/roxygen_and_build.Rd | 87 ++--
21 files changed, 669 insertions(+), 669 deletions(-)