Title: Implement tour methods in pure R code
Diff between tourr versions 0.4.1 dated 2011-07-07 and 0.5 dated 2011-09-02
Description: Implements geodesic interpolation and basis generation
functions that allow you to create new tour methods from R.
Author: Dianne Cook
Maintainer: Hadley Wickham
tourr-0.4.1/tourr/data/sleep.rda |only
tourr-0.4.1/tourr/man/cm.Rd |only
tourr-0.4.1/tourr/man/data-sleep.Rd |only
tourr-0.5/tourr/DESCRIPTION | 9 +++++----
tourr-0.5/tourr/MD5 |only
tourr-0.5/tourr/NAMESPACE | 9 +++++----
tourr-0.5/tourr/NEWS | 7 ++++++-
tourr-0.5/tourr/R/display-andrews.r | 2 +-
tourr-0.5/tourr/R/interesting-indices.r | 2 +-
tourr-0.5/tourr/R/path-index.r | 4 ++--
tourr-0.5/tourr/R/s4.r |only
tourr-0.5/tourr/R/tour-frozen.r | 4 ++--
tourr-0.5/tourr/R/tour-guided.r | 2 +-
tourr-0.5/tourr/man/andrews.Rd | 5 +----
tourr-0.5/tourr/man/animate.Rd | 6 ++----
tourr-0.5/tourr/man/bases_little.Rd | 2 +-
tourr-0.5/tourr/man/basis_init.Rd | 3 ---
tourr-0.5/tourr/man/basis_nearby.Rd | 2 +-
tourr-0.5/tourr/man/basis_random.Rd | 2 +-
tourr-0.5/tourr/man/blank_plot.Rd | 2 +-
tourr-0.5/tourr/man/check_freezer_safe.Rd | 2 +-
tourr-0.5/tourr/man/cmass.Rd |only
tourr-0.5/tourr/man/dependence_tour.Rd | 6 ++----
tourr-0.5/tourr/man/display_andrews.Rd | 5 +----
tourr-0.5/tourr/man/display_depth.Rd | 5 +----
tourr-0.5/tourr/man/display_dist.Rd | 3 ---
tourr-0.5/tourr/man/display_faces.Rd | 6 ++----
tourr-0.5/tourr/man/display_ggobi.Rd | 5 +----
tourr-0.5/tourr/man/display_image.Rd | 3 ---
tourr-0.5/tourr/man/display_pcp.Rd | 4 +---
tourr-0.5/tourr/man/display_scatmat.Rd | 4 +---
tourr-0.5/tourr/man/display_stars.Rd | 4 +---
tourr-0.5/tourr/man/display_stereo.Rd | 3 ---
tourr-0.5/tourr/man/display_trails.Rd | 5 +----
tourr-0.5/tourr/man/display_xy.Rd | 5 +----
tourr-0.5/tourr/man/draw_tour_axes.Rd | 2 +-
tourr-0.5/tourr/man/find_best_dir.Rd | 3 ---
tourr-0.5/tourr/man/find_path_peak.Rd | 3 ---
tourr-0.5/tourr/man/find_platform.Rd | 3 ++-
tourr-0.5/tourr/man/freeze.Rd | 8 +++-----
tourr-0.5/tourr/man/frozen_guided_tour.Rd | 4 ++--
tourr-0.5/tourr/man/frozen_tour.Rd | 6 ++----
tourr-0.5/tourr/man/geodesic_info.Rd | 10 ++++------
tourr-0.5/tourr/man/geodesic_path.Rd | 6 ++----
tourr-0.5/tourr/man/grand_tour.Rd | 6 ++----
tourr-0.5/tourr/man/guided_tour.Rd | 8 +++-----
tourr-0.5/tourr/man/holes.Rd | 3 ---
tourr-0.5/tourr/man/interpolate.Rd | 3 ---
tourr-0.5/tourr/man/lda_pp.Rd | 3 ---
tourr-0.5/tourr/man/little_tour.Rd | 6 ++----
tourr-0.5/tourr/man/local_tour.Rd | 6 ++----
tourr-0.5/tourr/man/new_geodesic_path.Rd | 9 +++------
tourr-0.5/tourr/man/new_tour.Rd | 3 ---
tourr-0.5/tourr/man/normalise.Rd | 3 ---
tourr-0.5/tourr/man/orthonormalise_by.Rd | 3 ---
tourr-0.5/tourr/man/path_curves.Rd | 3 ---
tourr-0.5/tourr/man/path_index.Rd | 4 ++--
tourr-0.5/tourr/man/paths_index.Rd | 3 ---
tourr-0.5/tourr/man/pda_pp.Rd | 3 ---
tourr-0.5/tourr/man/planned_tour.Rd | 6 ++----
tourr-0.5/tourr/man/plot.path_curve.Rd | 6 ++----
tourr-0.5/tourr/man/proj_dist.Rd | 3 ---
tourr-0.5/tourr/man/project3d.Rd | 5 +----
tourr-0.5/tourr/man/render.Rd | 2 +-
tourr-0.5/tourr/man/rescale.Rd | 5 +----
tourr-0.5/tourr/man/save_history.Rd | 3 ---
tourr-0.5/tourr/man/search_frozen_geodesic.Rd | 4 ----
tourr-0.5/tourr/man/search_geodesic.Rd | 7 ++-----
tourr-0.5/tourr/man/sphere.Rd | 7 ++-----
tourr-0.5/tourr/man/to_stop.Rd | 5 +----
tourr-0.5/tourr/man/xnul.Rd | 5 +----
71 files changed, 86 insertions(+), 204 deletions(-)
Title: Statistical Methods for Quality Science
Diff between qualityTools versions 1.47 dated 2011-08-12 and 1.48 dated 2011-09-02
Description: This Package contains methods associated with the Define,
Measure, Analyze, Improve and Control (i.e. DMAIC) cycle of the
Six Sigma Quality Management methodology.It covers distribution
fitting, normal and non-normal process capability indices,
techniques for Measurement Systems Analysis especially gage
capability indices and Gage Repeatability (i.e Gage RR) and
Reproducibility studies, factorial and fractional factorial
designs as well as response surface methods including the use
of desirability functions. Improvement via Six Sigma is project
based strategy that covers 5 phases: Define - Pareto Chart;
Measure - Probability and Quantile-Quantile Plots, Process
Capability Indices for various distributions and Gage RR
Analyze i.e. Pareto Chart, Multi-Vari Chart, Dot Plot; Improve
- Full and fractional factorial, response surface and mixture
designs as well as the desirability approach for simultaneous
optimization of more than one response variable. Normal, Pareto
and Lenth Plot of effects as well as Interaction Plots; Control
- Quality Control Charts can be found in the qcc package. The
focus is on teaching the statistical methodology used in the
Quality Sciences.
Author: Thomas Roth
Maintainer: Thomas Roth
DESCRIPTION | 47 ++++++++++---------
MD5 | 24 +++++-----
R/des_e.r | 105 ++++++++++++++++++++++++--------------------
R/gag_n.r | 2
R/pcr_r.r | 9 +--
inst/CITATION | 4 -
inst/doc/qualityTools.pdf |binary
inst/doc/qualityTools.rnw | 2
man/cp.rd | 2
man/desirability.Rd | 14 ++++-
man/optimum.Rd | 13 ++---
man/pcr.Rd | 28 +++++++----
man/qualityTools-package.Rd | 4 -
13 files changed, 144 insertions(+), 110 deletions(-)
Title: Munsell colour system
Diff between munsell versions 0.2 dated 2010-11-09 and 0.3 dated 2011-09-02
Description: Functions for exploring and using the Munsell colour
system
Author: Charlotte Wickham
Maintainer: Charlotte Wickham
munsell-0.2/munsell/data |only
munsell-0.2/munsell/load.r |only
munsell-0.2/munsell/man/munsell.map.Rd |only
munsell-0.3/munsell/DESCRIPTION | 7 +---
munsell-0.3/munsell/MD5 |only
munsell-0.3/munsell/NAMESPACE | 31 +++++++++----------
munsell-0.3/munsell/NEWS | 5 +++
munsell-0.3/munsell/R/sysdata.rda |only
munsell-0.3/munsell/man/check_mnsl.Rd | 33 +++++++++++---------
munsell-0.3/munsell/man/chroma_slice.Rd | 37 ++++++++++++-----------
munsell-0.3/munsell/man/complement.Rd | 31 ++++++++++---------
munsell-0.3/munsell/man/complement_slice.Rd | 27 +++++++++-------
munsell-0.3/munsell/man/darker.Rd | 26 ++++++++--------
munsell-0.3/munsell/man/desaturate.Rd | 28 +++++++++--------
munsell-0.3/munsell/man/fix_mnsl.Rd | 27 +++++++++-------
munsell-0.3/munsell/man/hue_slice.Rd | 30 ++++++++++--------
munsell-0.3/munsell/man/hvc2mnsl.Rd | 44 ++++++++++++++++-----------
munsell-0.3/munsell/man/in_gamut.Rd | 33 +++++++++++---------
munsell-0.3/munsell/man/lighter.Rd | 26 ++++++++--------
munsell-0.3/munsell/man/mnsl.Rd | 45 ++++++++++++++++------------
munsell-0.3/munsell/man/mnsl_hues.Rd | 16 ++++-----
munsell-0.3/munsell/man/munsell.Rd | 12 ++-----
munsell-0.3/munsell/man/plot_closest.Rd | 39 ++++++++++++++----------
munsell-0.3/munsell/man/plot_common.Rd | 14 ++++----
munsell-0.3/munsell/man/plot_hex.Rd | 29 ++++++++++--------
munsell-0.3/munsell/man/plot_mnsl.Rd | 35 +++++++++++++--------
munsell-0.3/munsell/man/plot_polar.Rd | 14 ++++----
munsell-0.3/munsell/man/rgb2mnsl.Rd | 34 +++++++++++----------
munsell-0.3/munsell/man/saturate.Rd | 28 +++++++++--------
munsell-0.3/munsell/man/seq_mnsl.Rd | 32 +++++++++++--------
munsell-0.3/munsell/man/text_colour.Rd | 22 ++++++-------
munsell-0.3/munsell/man/value_slice.Rd | 31 ++++++++++---------
32 files changed, 410 insertions(+), 326 deletions(-)
Title: Classification and Regression Training
Diff between caret versions 4.99 dated 2011-09-02 and 5.01-001 dated 2011-09-02
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn
DESCRIPTION | 8 ++++----
MD5 | 42 +++++++++++++++++++++---------------------
inst/NEWS | 3 +++
inst/doc/allPred.pdf |binary
inst/doc/caretMisc.Rnw | 2 --
inst/doc/caretMisc.pdf |binary
inst/doc/caretSelection.Rnw | 3 +--
inst/doc/caretSelection.pdf |binary
inst/doc/caretTrain.Rnw | 2 --
inst/doc/caretTrain.pdf |binary
inst/doc/caretVarImp.Rnw | 2 --
inst/doc/caretVarImp.pdf |binary
inst/doc/compact.Rout | 4 ++--
inst/doc/filteredPred.pdf |binary
inst/doc/min.pdf |binary
inst/doc/speedup.pdf |binary
man/lattice.Rd | 8 ++------
man/plotClassProbs.Rd | 8 +-------
man/print.train.Rd | 9 +--------
man/sbf.Rd | 9 +--------
man/selection.Rd | 9 ++-------
man/train.Rd | 9 ---------
22 files changed, 38 insertions(+), 80 deletions(-)
Title: Testing Steepness of Dominance Hierarchies
Diff between steepness versions 0.1 dated 2010-03-26 and 0.2 dated 2011-09-02
Description: steepness is a package that computes steepness as a
property of dominance hierarchies. Steepness is defined as the
absolute slope of the straight line fitted to the normalized
David's scores. The normalized David's scores can be obtained
on the basis of dyadic dominance indices corrected for chance
or by means of proportions of wins. Given an observed
sociomatrix, it computes hierarchy's steepness and estimates
statistical significance by means of a randomization test.
Author: David Leiva
Maintainer: David Leiva
steepness-0.1/steepness/R/getinterc.R |only
steepness-0.1/steepness/R/getl1.R |only
steepness-0.1/steepness/R/getl2.R |only
steepness-0.1/steepness/R/getw1.R |only
steepness-0.1/steepness/R/getw2.R |only
steepness-0.1/steepness/man/getinterc.Rd |only
steepness-0.1/steepness/man/getl1.Rd |only
steepness-0.1/steepness/man/getl2.Rd |only
steepness-0.1/steepness/man/getw1.Rd |only
steepness-0.1/steepness/man/getw2.Rd |only
steepness-0.2/steepness/DESCRIPTION | 18
steepness-0.2/steepness/MD5 |only
steepness-0.2/steepness/NAMESPACE | 4
steepness-0.2/steepness/NEWS |only
steepness-0.2/steepness/R/getDS.R | 38 +
steepness-0.2/steepness/R/getDij.R | 20
steepness-0.2/steepness/R/getNormDS.R | 35 +
steepness-0.2/steepness/R/getOrderedMatrix.R |only
steepness-0.2/steepness/R/getPij.R |only
steepness-0.2/steepness/R/getStp.R | 52 +-
steepness-0.2/steepness/R/getplot.R | 79 +--
steepness-0.2/steepness/R/getwl.R |only
steepness-0.2/steepness/R/steeptest.R | 208 +++++----
steepness-0.2/steepness/man/getDS.Rd | 113 ++---
steepness-0.2/steepness/man/getDij.Rd | 120 +++--
steepness-0.2/steepness/man/getNormDS.Rd | 112 ++---
steepness-0.2/steepness/man/getOrderedMatrix.Rd |only
steepness-0.2/steepness/man/getPij.Rd |only
steepness-0.2/steepness/man/getStp.Rd | 109 ++--
steepness-0.2/steepness/man/getplot.Rd | 102 ++--
steepness-0.2/steepness/man/getwl.Rd |only
steepness-0.2/steepness/man/steepness-package.rd | 88 +--
steepness-0.2/steepness/man/steeptest.Rd | 147 +++---
steepness-0.2/steepness/src/steep.c | 507 ++++++++++++++++++++---
34 files changed, 1173 insertions(+), 579 deletions(-)
Title: Statistical Process Control
Diff between spc versions 0.4.0 dated 2011-02-28 and 0.4.1 dated 2011-09-02
Description: Evaluation of control charts by means of the zero-state,
steady-state ARL (Average Run Length). Setting up control
charts for given in-control ARL and plotting of the related
figures. The control charts under consideration are one- and
two-sided EWMA, CUSUM, and Shiryaev-Roberts schemes for
monitoring the mean of normally distributed independent data.
Now, the ARL calculation of the same set of schemes under drift
are added. Other charts and parameters are in preparation.
Further SPC areas will be covered as well (sampling plans,
capability indices ...).
Author: Sven Knoth, ...
Maintainer: Sven Knoth
DESCRIPTION | 8
MD5 |only
R/phat.ewma.arl.R |only
R/phat.ewma.crit.R |only
R/phat.ewma.lambda.R |only
R/s.res.ewma.arl.R | 2
R/xcusum.q.R |only
R/xewma.q.R | 34 -
R/zzz.R | 2
index | 3
man/phat.ewma.arl.Rd |only
man/xcusum.q.Rd |only
man/xewma.q.Rd | 45 +-
src/allspc.c | 753 +++++++++++++++++++++++++++++++++++++++-----
src/ewma_phat_arl_coll.c |only
src/ewma_phat_crit_coll.c |only
src/ewma_phat_lambda_coll.c |only
src/xcusum_q.c |only
src/xewma_q.c | 20 -
19 files changed, 750 insertions(+), 117 deletions(-)
Title: Hierarchical and grouped time series
Diff between hts versions 1.4 dated 2010-08-27 and 2.0 dated 2011-09-02
Description: Methods for analysing and forecasting hierarchical and
grouped time series.
Author: Rob J Hyndman, Roman A Ahmed, and Han Lin Shang
Maintainer: Rob J Hyndman
hts-1.4/hts/CHANGELOG |only
hts-1.4/hts/R/Scsr.R |only
hts-1.4/hts/R/accuracy.hts.R |only
hts-1.4/hts/R/bup.f.R |only
hts-1.4/hts/R/comb.f.R |only
hts-1.4/hts/R/cut.hts.R |only
hts-1.4/hts/R/fix.groups.R |only
hts-1.4/hts/R/get.level.R |only
hts-1.4/hts/R/hier.names.R |only
hts-1.4/hts/R/is.hts.R |only
hts-1.4/hts/R/jaslot.R |only
hts-1.4/hts/R/make.groups.R |only
hts-1.4/hts/R/print.hts.R |only
hts-1.4/hts/R/td.FP.R |only
hts-1.4/hts/R/td.gsA.R |only
hts-1.4/hts/R/td.gsF.R |only
hts-2.0/hts/ChangeLog |only
hts-2.0/hts/DESCRIPTION | 16 +--
hts-2.0/hts/MD5 |only
hts-2.0/hts/NAMESPACE | 16 ++-
hts-2.0/hts/R/bottomup.R |only
hts-2.0/hts/R/combine.R |only
hts-2.0/hts/R/forecast.hts.R | 204 +++++++++++++++++++++++-----------------
hts-2.0/hts/R/full.hts.R | 51 +++++++++-
hts-2.0/hts/R/hts.R | 160 +++++++++++++++++++++++++++----
hts-2.0/hts/R/middleout.R | 52 ++++++----
hts-2.0/hts/R/plot.hts.R | 96 +++++++++---------
hts-2.0/hts/R/summingmatrix.R |only
hts-2.0/hts/R/topdown.R |only
hts-2.0/hts/data/htseg1.rda |binary
hts-2.0/hts/data/htseg2.rda |binary
hts-2.0/hts/man/Smatrix.Rd |only
hts-2.0/hts/man/accuracy.hts.Rd | 10 -
hts-2.0/hts/man/combinef.Rd |only
hts-2.0/hts/man/forecast.hts.Rd | 29 +++--
hts-2.0/hts/man/hts-package.Rd | 15 +-
hts-2.0/hts/man/hts.Rd | 30 +++--
hts-2.0/hts/man/htseg1.Rd | 6 -
hts-2.0/hts/man/htseg2.Rd | 6 -
hts-2.0/hts/man/plot.hts.Rd | 16 +--
40 files changed, 466 insertions(+), 241 deletions(-)
Title: spatial and spatio-temporal geostatistical modelling, prediction
and simulation
Diff between gstat versions 1.0-2 dated 2011-08-29 and 1.0-3 dated 2011-09-02
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
DESCRIPTION | 8 +++---
MD5 | 14 +++++------
R/gstat.cv.R | 4 +--
R/variogram.default.R | 5 +++-
inst/doc/gstat.pdf |binary
inst/doc/prs.Rnw | 62 +++++++++++++++++++++++++++++++++++---------------
inst/doc/prs.pdf |binary
inst/doc/st.pdf |binary
8 files changed, 61 insertions(+), 32 deletions(-)
Title: Forecasting functions for time series
Diff between forecast versions 3.02 dated 2011-08-25 and 3.03 dated 2011-09-02
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 6 +
DESCRIPTION | 8 -
MD5 | 66 +++++------
R/arima.R | 260 ++++++++++++++++++++++----------------------
R/dshw.r | 2
R/ets.R | 74 ++++++------
R/forecast.R | 32 ++---
R/forecast2.R | 8 -
R/lm.R | 146 ++++++++++++------------
R/newarima2.R | 2
data/gold.rda |binary
man/Acf.Rd | 3
man/BoxCox.Rd | 4
man/BoxCoxlambda.Rd | 3
man/arfima.Rd | 17 +-
man/arima.Rd | 20 +--
man/auto.arima.Rd | 25 +---
man/decompose.Rd | 9 -
man/diebold.mariano.test.Rd | 3
man/dshw.Rd | 5
man/ets.Rd | 9 -
man/forecast.Arima.Rd | 2
man/forecast.HoltWinters.Rd | 2
man/forecast.ets.Rd | 8 -
man/forecast.lm.Rd | 3
man/forecast.stl.Rd | 5
man/forecastplot.Rd | 10 -
man/meanf.Rd | 4
man/rw.f.Rd | 4
man/seasonal.dummy.Rd | 6 -
man/seasonplot.Rd | 8 -
man/ses.Rd | 5
man/simulate.Rd | 12 +-
man/ts.display.Rd | 7 -
34 files changed, 395 insertions(+), 383 deletions(-)
Title: Dendrochronology Program Library in R
Diff between dplR versions 1.4.5 dated 2011-08-12 and 1.4.6 dated 2011-09-02
Description: This package contains functions for performing tree-ring
analyses, IO, and graphics.
Author: Andy Bunn with major additions from Mikko Korpela and other
significant contributions from Franco Biondi and Christian Zang
Maintainer: Andy Bunn
ChangeLog | 21 ++
DESCRIPTION | 10 -
MD5 | 10 -
R/corr.rwl.seg.R | 6
R/corr.series.seg.R | 26 +--
inst/unitTests/runit.dplR.R | 331 ++++++++++++++++++++++++++++++++++++++++++++
6 files changed, 377 insertions(+), 27 deletions(-)
Title: Steepness Rcmdr Plug-in
Diff between RcmdrPlugin.steepness versions 0.1 dated 2010-03-26 and 0.2 dated 2011-09-02
More information about RcmdrPlugin.steepness at CRAN
Description: This package provides a GUI for the steepness package, it
is written as an Rcmdr plug-in.
Author: David Leiva
Maintainer: David Leiva
DESCRIPTION | 10 +--
MD5 |only
R/RcmdrPlugin.steepness.R | 108 ++++++++++++++++++++++++++++++++--
inst/etc/menus.txt | 13 ++--
man/RcmdrPlugin.steepness-internal.Rd | 25 ++++---
man/RcmdrPlugin.steepness-package.Rd | 4 -
6 files changed, 131 insertions(+), 29 deletions(-)
Permanent link
Title: Interface to Unidata netCDF data files
Diff between ncdf versions 1.6.5 dated 2011-01-10 and 1.6.6 dated 2011-09-02
Description: This package provides a high-level R interface to
Unidata's netCDF data files, which are portable across
platforms and include metadata information in addition to the
data sets. Using this package netCDF files can be opened and
data sets read in easily. It is also easy to create new netCDF
dimensions, variables, and files, or manipulate existing netCDF
files. This interface provides considerably more functionality
than the old "netCDF" package for R, and is not compatible with
the old "netCDF" package for R. Release 1.2 (2005-01-24) adds
better support for character variables, and miscellaneous bug
fixes. Release 1.3 (2005-03-27) is for miscellaneous bug
fixes, and improves the documentation. Release 1.4
(2005-06-27) improves the efficiency, and adds small bug fixes.
Release 1.5 (2006-02-27) adds support for byte variables, plus
small bug fixes. Release 1.6 (2006-06-19) adds various bug
fixes, plus support for making dimensions WITHOUT dimvars
(coordinate variables), although I think this is a bad idea in
general. ALSO, the default behavior for put.var.ncdf with
unlimited variables and NO specified start and count parameters
has changed! Before, the default was to append to the end of
the existing variable. Now, the default is to assume a start
of 1 along each dimension, and a count of the current length of
each dimension. This really can be ambiguous when using an
unlimited dimension. I always specify both start and count when
writing to a variable with an unlimited dimension, and suggest
you do as well. I may require this in a future release, as it
seems to cause people problems.
Author: David Pierce
Maintainer: Brian Ripley
ncdf-1.6.5/ncdf/R/load.R |only
ncdf-1.6.6/ncdf/DESCRIPTION | 9 ++++-----
ncdf-1.6.6/ncdf/MD5 |only
ncdf-1.6.6/ncdf/NAMESPACE |only
ncdf-1.6.6/ncdf/src/ncdf.c | 3 +--
ncdf-1.6.6/ncdf/src/ncdf2.c | 6 +++---
ncdf-1.6.6/ncdf/src/ncdf3.c | 27 ++++++++++++---------------
7 files changed, 20 insertions(+), 25 deletions(-)
Title: Infrastructure for seriation
Diff between seriation versions 1.0-4 dated 2011-06-28 and 1.0-5 dated 2011-09-02
Description: Infrastructure for seriation with an implementation of
several seriation/sequencing techniques to reorder matrices,
dissimilarity matrices, and dendrograms. Also contains some
visualizations techniques based on seriation.
Author: Michael Hahsler, Christian Buchta and Kurt Hornik
Maintainer: Michael Hahsler
CHANGES |only
DESCRIPTION | 8 +--
MD5 |only
NAMESPACE | 2
R/bertinplot.R | 128 ++++++++++++++++++++++++++++++++++++++-----------
R/map.R |only
data/Irish.rda |binary
data/Munsingen.rda |binary
data/Psych24.rda |binary
data/Townships.rda |binary
data/Zoo.rda |binary
inst/doc/seriation.pdf |binary
man/bertinplot.Rd | 42 ++++++++++++++--
13 files changed, 145 insertions(+), 35 deletions(-)
Title: Warnes and Raftery's MCGibbsit MCMC diagnostic
Diff between mcgibbsit versions 1.0.6 dated 2010-08-11 and 1.0.8 dated 2011-09-02
Description: mcgibbsit provides an implementation of Warnes & Raftery's
MCGibbsit run-length diagnostic for a set of (not-necessarily
independent) MCMC sampers. It combines the estimate
error-bounding approach of Raftery and Lewis with evaulate
between verses within chain approach of Gelman and Rubin.
Author: Gregory R. Warnes
Maintainer: Gregory R. Warnes
ChangeLog |only
DESCRIPTION | 13 +++++++------
MD5 |only
NEWS |only
R/read.mcmc.R | 8 ++++----
inst |only
man/mcgibbsit.Rd | 11 ++---------
man/read.mcmc.Rd | 25 +++++++++++++------------
8 files changed, 26 insertions(+), 31 deletions(-)
Title: Routines for fitting kinetic models to chemical degradation data
Diff between kinfit versions 1.0.8 dated 2011-03-21 and 1.1.04 dated 2011-09-02
Description: Simple calculation routines based on the FOCUS Kinetics
Report (2006). Only kinetic models for parent only datasets are
included (no metabolite formation/decline or multicompartment
kinetics). Please note that no warranty is implied for
correctness of results or fitness for a particular purpose.
Author: Johannes Ranke and Katrin Lindenberger
Maintainer: Johannes Ranke
DESCRIPTION | 11 +--
MD5 |only
R/kinfit.R | 74 ++++++++++++++++----
R/kinplot.R | 36 ++++++++--
R/kinreport.R | 6 +
R/kinresplot.R | 4 -
R/kinresults.R | 134 +++++++++++++++++++++++---------------
inst/doc/kinfit.pdf |binary
man/kinfit.Rd | 3
man/kinplot.Rd | 3
man/kinresplot.Rd | 2
tests/test_FOCUS_2006_A.Rout.save | 2
12 files changed, 187 insertions(+), 88 deletions(-)
Title: Greg's Miscellaneous Functions
Diff between gregmisc versions 2.1.1 dated 2006-11-29 and 2.1.2 dated 2011-09-02
Description: The former gregmisc bundle is a repository for a variety
of useful functions. The gregmisc package was recently split
into a set of more focused packages: gdata, gmodels, gplots,
gtools. The purpose of this 'new' gregmisc is to provide an
easy way to access the original combined functionality. To
this end, it simply depends on all of the new packages so that
these will installed/loaded when this package is
installed/loaded.
Author: Gregory R. Warnes.
Maintainer: Gregory R. Warnes
gregmisc-2.1.1/gregmisc/inst/doc/gregmisc.aux |only
gregmisc-2.1.1/gregmisc/inst/doc/gregmisc.log |only
gregmisc-2.1.1/gregmisc/inst/doc/gregmisc.out |only
gregmisc-2.1.1/gregmisc/inst/doc/gregmisc.pdf |only
gregmisc-2.1.2/gregmisc/DESCRIPTION | 28 +++++++++++++-------------
gregmisc-2.1.2/gregmisc/MD5 |only
gregmisc-2.1.2/gregmisc/R/First.R | 17 ++++++---------
7 files changed, 22 insertions(+), 23 deletions(-)
Title: Interface between R and the Google Visualisation API
Diff between googleVis versions 0.2.8 dated 2011-07-31 and 0.2.9 dated 2011-09-02
Description: googleVis provides an interface between R and the Google
Visualisation API to create interactive charts for web pages.
The functions of the package allow the user to visualise data
stored in R data frames with the Google Visualisation API
without uploading the data to Google. The output of a googleVis
function is html code that contains the data and references to
JavaScript functions hosted by Google. googleVis makes use of
the internal R HTTP server to display the output locally. A
browser with Flash and Internet connection is required. Please
visit the project web site for more information and examples.
Author: Markus Gesmann, Diego de Castillo
Maintainer: Markus Gesmann
googleVis-0.2.8/googleVis/inst/tests |only
googleVis-0.2.9/googleVis/DESCRIPTION | 10
googleVis-0.2.9/googleVis/MD5 |only
googleVis-0.2.9/googleVis/NAMESPACE | 30 +
googleVis-0.2.9/googleVis/NEWS | 31 ++
googleVis-0.2.9/googleVis/R/gvis.R | 82 ++++-
googleVis-0.2.9/googleVis/R/gvisChartEditor.R |only
googleVis-0.2.9/googleVis/R/gvisCoreCharts.R | 7
googleVis-0.2.9/googleVis/R/gvisTreeMap.R | 20 +
googleVis-0.2.9/googleVis/R/zzz.R | 1
googleVis-0.2.9/googleVis/THANKS | 3
googleVis-0.2.9/googleVis/demo/googleVis.R | 34 ++
googleVis-0.2.9/googleVis/inst/doc/Editor.pdf |only
googleVis-0.2.9/googleVis/inst/doc/Options.pdf |only
googleVis-0.2.9/googleVis/inst/doc/googleVis.Rnw | 148 ++++++++-
googleVis-0.2.9/googleVis/inst/doc/googleVis.bib | 8
googleVis-0.2.9/googleVis/inst/doc/googleVis.pdf |binary
googleVis-0.2.9/googleVis/inst/doc/gvisObject.pdf |only
googleVis-0.2.9/googleVis/inst/gadgets/editor.xml |only
googleVis-0.2.9/googleVis/inst/gadgets/options.xml |only
googleVis-0.2.9/googleVis/man/Andrew.Rd | 3
googleVis-0.2.9/googleVis/man/createGoogleGadget.Rd | 12
googleVis-0.2.9/googleVis/man/googleVis-package.Rd | 4
googleVis-0.2.9/googleVis/man/gvisAnnotatedTimeLine.Rd | 13
googleVis-0.2.9/googleVis/man/gvisAreaChart.Rd | 165 +++++++++-
googleVis-0.2.9/googleVis/man/gvisBarChart.Rd | 161 +++++++++-
googleVis-0.2.9/googleVis/man/gvisCandlestickChart.Rd | 260 +++++++++++++----
googleVis-0.2.9/googleVis/man/gvisColumnChart.Rd | 144 +++++++++
googleVis-0.2.9/googleVis/man/gvisComboChart.Rd | 184 +++++++++---
googleVis-0.2.9/googleVis/man/gvisGauge.Rd | 9
googleVis-0.2.9/googleVis/man/gvisGeoChart.Rd | 9
googleVis-0.2.9/googleVis/man/gvisGeoMap.Rd | 10
googleVis-0.2.9/googleVis/man/gvisIntensityMap.Rd | 9
googleVis-0.2.9/googleVis/man/gvisLineChart.Rd | 175 ++++++++++-
googleVis-0.2.9/googleVis/man/gvisMap.Rd | 9
googleVis-0.2.9/googleVis/man/gvisMotionChart.Rd | 13
googleVis-0.2.9/googleVis/man/gvisOrgChart.Rd | 9
googleVis-0.2.9/googleVis/man/gvisPieChart.Rd | 19 -
googleVis-0.2.9/googleVis/man/gvisScatterChart.Rd | 159 +++++++++-
googleVis-0.2.9/googleVis/man/gvisTable.Rd | 12
googleVis-0.2.9/googleVis/man/gvisTreeMap.Rd | 17 +
41 files changed, 1538 insertions(+), 232 deletions(-)
Title: Toolkit implementation of gWidgets for tcltk package
Diff between gWidgetstcltk versions 0.0-44 dated 2011-07-23 and 0.0-45 dated 2011-09-02
Description: Port of the gWidgets API to the tcltk package. Requires TK
8.5 or greater for the tile (ttk)widgets
http://www.tcl.tk/software/tcltk/8.5.tml. This is the default
on Windows. Under linux, Tk must be installed. Under Mac OS X
(10.5) there are two options: native Tk or X11. For the native
one, Tk must be upgraded. See www.tcl.tk to download source.
Under the Mac it compiles and installs cleanly. For X11, tcltk
libraries can be downloaded to augment the R binary package.
See http://cran.r-project.org/bin/macosx/tools/. The gdf
function requires the add on Tk package TkTable
(http://tktable.sourceforge.net/).
Author: John Verzani
Maintainer: John Verzani
ChangeLog | 37 ++++++
DESCRIPTION | 8 -
MD5 |only
NEWS | 19 +++
R/aaaGenerics.R | 9 -
R/aaaR5classes.R | 118 ++++++++++++++++++--
R/gcheckboxgroup.R | 161 +++++++++++++--------------
R/gcheckboxgrouptable.R |only
R/gdialogs.R | 51 +++++---
R/gedit.R | 17 ++
R/glayout.R | 2
R/gradio.R | 138 +++++++++++------------
R/gspinbutton.R | 118 ++++++++++----------
R/gtable.R | 224 +++++++++++++++++++-------------------
R/gtree.R | 54 ++++-----
R/tcltkFuns.R | 66 +++++++++++
R/zzz.R | 7 +
TODO.txt | 12 +-
inst/images/checkbutton-off.gif |only
inst/images/checkbutton-on.gif |only
man/gWidgetstcltk-undocumented.Rd | 16 ++
21 files changed, 671 insertions(+), 386 deletions(-)
Title: Toolkit implementation of gWidgets for RGtk2
Diff between gWidgetsRGtk2 versions 0.0-75 dated 2011-07-23 and 0.0-76 dated 2011-09-02
Description: Port of gWidgets API to RGtk2
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani
ChangeLog | 28 ++++++++++++
DESCRIPTION | 8 +--
MD5 |only
NEWS | 14 ++++++
R/aaaGenerics.R | 1
R/gbutton.R | 2
R/gdialogs.R | 86 ++++++++++++++++++++++++++++++--------
R/gedit.R | 53 ++++++++---------------
R/gexpandgroup.R | 25 +++--------
R/ggrid.R | 13 +++--
R/glayout.R | 4 -
R/gtext.R | 7 +--
R/gtkStuff.R | 24 ++++++++++
R/gwindow.R | 7 ++-
TODO.txt | 19 ++++----
man/gWidgetsRGtk2-undocumented.Rd | 5 +-
16 files changed, 201 insertions(+), 95 deletions(-)
Title: gWidgets API for building toolkit-independent, interactive GUIs
Diff between gWidgets versions 0.0-45 dated 2011-07-23 and 0.0-46 dated 2011-09-02
Description: gWidgets provides a toolkit-independent API for building
interactive GUIs. Atleast one of the gWidgetsXXX packages, such
as gWidgetstcltk, needs to be installed. Some icons are on loan
from the scigraphica project
http://scigraphica.sourceforge.net.
Author: John Verzani. Based on the iwidgets code of Simon Urbanek and
suggestions by Simon Urbanek, Philippe Grosjean and Michael
Lawrence
Maintainer: John Verzani
ChangeLog | 26 ++++++++
DESCRIPTION | 6 -
MD5 |only
NAMESPACE | 11 ++-
NEWS | 12 +++
R/dialogs.R | 21 +++---
R/gbutton.R | 10 ++-
R/gcheckbox.R | 25 +++++++
R/gcheckboxgroup.R | 6 +
R/gcombobox.R | 31 +++++++++
R/gedit.R | 1
R/ghelp.R | 2
R/glabel.R | 37 +++++++++++
R/glayout.R | 22 ++++++
R/gradio.R | 20 +++++-
R/gslider.R | 26 +++++++-
R/gspinbutton.R | 24 +++++++
R/gtable.R | 9 ++
R/guiWidget.R | 145 ++++++++++++++++++++++++++++++++++++++++++---
R/gvariables.R | 8 +-
R/toolkitClasses.R | 9 ++
R/zzz.R | 2
TODO.txt | 4 +
inst/doc/addingToolkit.pdf |binary
inst/doc/gWidgets.pdf |binary
man/gWidgets-dialogs.Rd | 39 +++++++-----
man/gWidgets-methods.Rd | 14 ++++
man/gcheckbox.Rd | 1
man/gcombobox.Rd | 1
man/glabel.Rd | 1
man/glayout.Rd | 5 +
man/gmenu.Rd | 13 ++--
man/gradio.Rd | 1
man/gslider.Rd | 36 +++++++----
man/gtext.Rd | 4 -
man/guiToolkit.Rd | 9 ++
36 files changed, 508 insertions(+), 73 deletions(-)
Title: R functions for handling multiple processes.
Diff between fork versions 1.2.2 dated 2009-05-10 and 1.2.4 dated 2011-09-02
Description: These functions provides simple wrappers around the Unix
process management API calls: fork, signal, wait, waitpid,
kill, and _exit. This enables construction of programs that
utilize and mange multiple concurrent processes.
Author: Gregory R. Warnes
Maintainer: Gregory R. Warnes
ChangeLog | 220 ++++++++++++++++++++++------------------------------
DESCRIPTION | 14 +--
MD5 |only
NAMESPACE |only
NEWS | 37 +++++++-
R/fork.R | 12 +-
R/kill.R | 6 -
R/zzz.R | 2
inst/ChangeLog | 220 ++++++++++++++++++++++------------------------------
inst/NEWS | 37 +++++++-
man/exit.Rd | 4
man/fork.Rd | 4
man/getpid.Rd | 4
man/handleSIGCLD.Rd | 2
man/kill.Rd | 4
man/signal.Rd | 2
man/signame.Rd | 2
man/wait.Rd | 4
18 files changed, 281 insertions(+), 293 deletions(-)
Title: Classification and Regression Training
Diff between caret versions 4.98 dated 2011-07-26 and 4.99 dated 2011-09-02
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn
DESCRIPTION | 19
MD5 |only
NAMESPACE | 11
R/avNNet.R | 12
R/bagEarth.R | 2
R/confusionMatrix.R | 82 ++
R/createGrid.R | 3
R/createModel.R | 41 -
R/filterVarImp.R | 2
R/misc.R | 451 ---------------
R/modelLookup.R | 96 +--
R/preProcess.R | 4
R/predictionFunction.R | 6
R/print.train.R | 1
R/probFunction.R | 16
R/resamples.R | 10
R/rfe.R | 248 +-------
R/selectByFilter.R | 165 +----
R/selection.R | 4
R/train.default.R | 99 ---
R/trainControl.R | 12
R/workflows.R |only
inst/NEWS | 34 +
inst/doc/allPred.pdf |binary
inst/doc/caretMisc.Rnw | 2
inst/doc/caretMisc.pdf |binary
inst/doc/caretSelection.Rnw | 8
inst/doc/caretSelection.pdf |binary
inst/doc/caretTrain.Rnw | 1263 +++++++++++++++++++------------------------
inst/doc/caretTrain.pdf |binary
inst/doc/caretVarImp.Rnw | 2
inst/doc/caretVarImp.pdf |binary
inst/doc/compact.Rout | 6
inst/doc/filteredPred.pdf |binary
inst/doc/min.pdf |only
inst/doc/speedup.pdf |binary
man/BoxCoxTrans.Rd | 3
man/avNNet.Rd | 2
man/confusionMatrix.train.Rd | 24
man/dotplot.varImp.train.Rd | 1
man/findCorrelation.Rd | 4
man/findLinearCombos.Rd | 5
man/lattice.Rd | 8
man/lattice.resamples.Rd | 6
man/plotClassProbs.Rd | 7
man/predict.bagEarth.Rd | 4
man/print.train.Rd | 8
man/resampleHist.Rd | 1
man/rfe.Rd | 86 --
man/rfeControl.Rd | 10
man/sbf.Rd | 32 +
man/sbfControl.Rd | 10
man/selection.Rd | 10
man/spatialSign.Rd | 6
man/summary.bagEarth.Rd | 4
man/train.Rd | 101 ---
man/trainControl.Rd | 10
src/caret.c | 4
58 files changed, 1124 insertions(+), 1821 deletions(-)
Title: Calculate ANSI S3.5-1997 Speech Intelligibility Index
Diff between SII versions 1.0.0 dated 2010-07-24 and 1.0.2 dated 2011-09-02
Description: This package calculates ANSI S3.5-1997 Speech
Intelligibility Index (SII), a standard method for computing
the intelligibility of speech from acoustical measurements of
speech, noise, and hearing thresholds. This package includes
data frames corresponding to Tables 1 - 4 in the ANSI standard
as well as a function utilizing these tables and user-provided
hearing threshold and noise level measurements to compute the
SII score. The methods implemented here extend the standard
computations to allow calculation of SII when the measured
frequencies do not match those required by the standard by
applying interpolation to obtain values for the required
frequencies -- Development of this package was funded by the
Center for Bioscience Education and Technology (CBET) of the
Rochester Institute of Technology (RIT).
Author: Gregory R. Warnes
Maintainer: Gregory R. Warnes
SII-1.0.0/SII/data/SII_Constants.xls |only
SII-1.0.2/SII/ChangeLog | 13 +++++++++++++
SII-1.0.2/SII/DESCRIPTION | 10 +++++-----
SII-1.0.2/SII/MD5 |only
SII-1.0.2/SII/NAMESPACE | 2 ++
SII-1.0.2/SII/NEWS | 8 ++++++++
SII-1.0.2/SII/inst/ChangeLog | 13 +++++++++++++
SII-1.0.2/SII/inst/NEWS | 8 ++++++++
SII-1.0.2/SII/inst/doc/SII.Rnw | 2 +-
SII-1.0.2/SII/inst/doc/SII.pdf |binary
SII-1.0.2/SII/inst/extdata |only
SII-1.0.2/SII/man/SII-package.Rd | 2 +-
12 files changed, 51 insertions(+), 7 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.2.28 dated 2011-08-02 and 0.2.29 dated 2011-09-02
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 2.2.1). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licenses under the GNU GPL version 2 or later, as is the rest
of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates
ChangeLog | 6 ++
DESCRIPTION | 8 +--
MD5 |only
inst/NEWS | 6 ++
inst/include/armadillo_bits/arma_version.hpp | 2
inst/include/armadillo_bits/fn_as_scalar.hpp | 69 ++++-----------------------
inst/include/armadillo_bits/fn_svd.hpp | 28 +++++++++-
7 files changed, 52 insertions(+), 67 deletions(-)
Title: Analysis of Parent-Specific DNA Copy Numbers
Diff between PSCBS versions 0.12.1 dated 2011-08-08 and 0.12.2 dated 2011-09-02
Description: Segments allele-specific DNA copy number data to detect
regions with abnormal copy number within each parental
chromosome
Author: A.B. Olshen, H. Bengtsson, P. Neuvial, P.T. Spellman, R.A.
Olshen, V.E. Seshan
Maintainer: Henrik Bengtsson
DESCRIPTION | 12 +++++++-----
MD5 | 6 +++---
R/zzz.R | 4 +++-
inst/NEWS | 7 ++++++-
4 files changed, 19 insertions(+), 10 deletions(-)