Title: Functions to access vegetation databases (Turboveg and VegetWeb)
and prepare data for analysis
Diff between vegdata versions 0.3.2 dated 2011-07-02 and 0.4 dated 2011-09-30
Description: Handling of vegetation data sets from personal Turboveg or
online VegetWeb Databases. Taxonomic harmonization of datasets
with the help of the German taxonomical standard list
"GermanSL".
Author: Florian Jansen
Maintainer: Florian Jansen
vegdata-0.3.2/vegdata/R/child.r |only
vegdata-0.3.2/vegdata/R/vw.biblio.r |only
vegdata-0.3.2/vegdata/R/zzz.r |only
vegdata-0.3.2/vegdata/inst/tvdata/Species/GermanSL1.2 |only
vegdata-0.3.2/vegdata/man/agg.Rd |only
vegdata-0.3.2/vegdata/man/tv.Biblio.Rd |only
vegdata-0.3.2/vegdata/man/tv.Comprefl.Rd |only
vegdata-0.3.2/vegdata/man/tv.Coverperc.Rd |only
vegdata-0.3.2/vegdata/man/tv.Eco.Rd |only
vegdata-0.3.2/vegdata/man/tv.Metainfo.Rd |only
vegdata-0.3.2/vegdata/man/tv.Mono.Rd |only
vegdata-0.3.2/vegdata/man/tv.Obs.Rd |only
vegdata-0.3.2/vegdata/man/tv.Site.Rd |only
vegdata-0.3.2/vegdata/man/tv.Veg.Rd |only
vegdata-0.3.2/vegdata/man/tv.Write.Rd |only
vegdata-0.4/vegdata/DESCRIPTION | 16 -
vegdata-0.4/vegdata/MD5 |only
vegdata-0.4/vegdata/NAMESPACE |only
vegdata-0.4/vegdata/R/comb.species.r |only
vegdata-0.4/vegdata/R/tax.r | 230 ++++++++++++++---
vegdata-0.4/vegdata/R/taxval.r | 231 +++++++++---------
vegdata-0.4/vegdata/R/tv.biblio.r | 4
vegdata-0.4/vegdata/R/tv.coverperc.r | 2
vegdata-0.4/vegdata/R/tv.home.r | 28 --
vegdata-0.4/vegdata/R/tv.metainfo.r | 2
vegdata-0.4/vegdata/R/tv.mono.r | 9
vegdata-0.4/vegdata/R/tv.obs.r | 2
vegdata-0.4/vegdata/R/tv.refl.r | 9
vegdata-0.4/vegdata/R/tv.site.r | 4
vegdata-0.4/vegdata/R/tv.veg.r | 32 +-
vegdata-0.4/vegdata/R/vegetweb.r | 67 ++---
vegdata-0.4/vegdata/inst/ChangeLog | 9
vegdata-0.4/vegdata/inst/doc/SweaveC.sty |only
vegdata-0.4/vegdata/inst/doc/ecol_let.bst |only
vegdata-0.4/vegdata/inst/doc/gVis.jpg |only
vegdata-0.4/vegdata/inst/doc/vegdata.Rnw |only
vegdata-0.4/vegdata/inst/doc/vegdata.bib |only
vegdata-0.4/vegdata/inst/doc/vegdata.pdf |binary
vegdata-0.4/vegdata/inst/doc/veronica.png |only
vegdata-0.4/vegdata/inst/tvdata/Data/taxatest |only
vegdata-0.4/vegdata/inst/tvdata/Species/README |only
vegdata-0.4/vegdata/man/tax.Rd | 22 +
vegdata-0.4/vegdata/man/taxval.Rd | 15 -
vegdata-0.4/vegdata/man/tv.biblio.Rd |only
vegdata-0.4/vegdata/man/tv.comprefl.Rd |only
vegdata-0.4/vegdata/man/tv.coverperc.Rd |only
vegdata-0.4/vegdata/man/tv.eco.Rd |only
vegdata-0.4/vegdata/man/tv.metainfo.Rd |only
vegdata-0.4/vegdata/man/tv.mono.Rd |only
vegdata-0.4/vegdata/man/tv.obs.Rd |only
vegdata-0.4/vegdata/man/tv.site.Rd |only
vegdata-0.4/vegdata/man/tv.veg.Rd |only
vegdata-0.4/vegdata/man/tv.write.Rd |only
vegdata-0.4/vegdata/man/vegdata-package.Rd | 3
vegdata-0.4/vegdata/man/vegetweb.Rd | 14 -
55 files changed, 434 insertions(+), 265 deletions(-)
Title: R object-oriented programming with or without references
Diff between R.oo versions 1.8.1 dated 2011-07-23 and 1.8.2 dated 2011-09-30
Description: Methods and classes for object-oriented programming in R
with or without references. Large effort has been made on
making definition of methods as simple as possible with a
minimum of maintenance for package developers. The package has
been developed since 2001 and is now considered very stable.
This is a cross-platform package implemented in pure R that
defines standard S3 classes without any tricks.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 8 ++++----
MD5 |only
R/040.setConstructorS3.R | 41 +++++++++++++++++++++++++++--------------
R/Rdoc.R | 8 +++++---
inst/NEWS | 6 ++++++
man/setConstructorS3.Rd | 41 +++++++++++++++++++++++++++--------------
6 files changed, 69 insertions(+), 35 deletions(-)
Title: Maximum Likelihood Difference Scaling
Diff between MLDS versions 0.3-0 dated 2011-04-23 and 0.3-1 dated 2011-09-30
Description: Difference scaling is a method for scaling perceived
supra-threshold differences. The package contains functions
that allow the user to design and run a difference scaling
experiment, to fit the resulting data by maximum likelihood and
test the internal validity of the estimated scale.
Author: Kenneth Knoblauch and Laurence T. Maloney, based in part on C
code written by Laurence T. Maloney and J. N. Yang
Maintainer: Ken Knoblauch
DESCRIPTION | 8 ++++----
MD5 |only
R/mlds.R | 9 +++++----
inst/NEWS | 6 ++++++
inst/doc/Figures/KM_JSS-002.pdf |binary
inst/doc/Figures/KM_JSS-003.pdf |binary
inst/doc/Figures/KM_JSS-015.pdf |binary
inst/doc/Figures/KM_JSS-019.pdf |binary
inst/doc/Figures/KM_JSS-020.pdf |binary
inst/doc/Figures/KM_JSS-021.pdf |binary
inst/doc/MLDS.Stex | 17 +++++++++++++++--
inst/doc/MLDS.bib | 20 +++++++++++++++++++-
inst/doc/MLDS.pdf |binary
man/mlds.Rd | 9 ++++++---
14 files changed, 55 insertions(+), 14 deletions(-)
Title: Importing and working with OpenStreetMap-Data
Diff between osmar versions 1.0 dated 2011-09-01 and 1.0-01 dated 2011-09-30
Description: This package imports the (Spatial and Non-Spatial) Data of
OpenStreetMap into objects of R by using the OSM-API v0.6. For
now it is reduced on using various commands of type "GET", like
getting data of an explicit element or a region defined by
coordinates. It also includes some methods on working with the
newly created objects.
Author: Thomas Schlesinger and Manuel Eugster
Maintainer: Thomas Schlesinger
DESCRIPTION | 12 ++++++------
MD5 | 14 +++++++-------
R/getOSMObject.R | 2 +-
R/node2SPDF.R | 2 +-
R/way2SLDF.R | 2 +-
man/findKeyValue.Rd | 2 +-
man/getBboxXML.Rd | 2 +-
man/getOSMObject.Rd | 2 +-
8 files changed, 19 insertions(+), 19 deletions(-)
Title: MCMC Diagnostic Plots
Diff between scapeMCMC versions 1.1-2 dated 2011-02-10 and 1.1-3 dated 2011-09-30
Description: Markov chain Monte Carlo diagnostic plots. The purpose of
the package is to combine existing tools from the 'coda' and
'lattice' packages, and make it easy to adjust graphical
details. It can be useful for anyone using MCMC analysis,
regardless of the application.
Author: Arni Magnusson and Ian Stewart
Maintainer: Arni Magnusson
scapeMCMC-1.1-2/scapeMCMC/data/xmcmc.R |only
scapeMCMC-1.1-2/scapeMCMC/data/xproj.R |only
scapeMCMC-1.1-3/scapeMCMC/DESCRIPTION | 10 +++++-----
scapeMCMC-1.1-3/scapeMCMC/MD5 |only
scapeMCMC-1.1-3/scapeMCMC/NEWS | 8 ++++++++
scapeMCMC-1.1-3/scapeMCMC/R/plotQuant.R | 4 ++++
scapeMCMC-1.1-3/scapeMCMC/R/plotSplom.R | 4 ++++
scapeMCMC-1.1-3/scapeMCMC/data/datalist |only
scapeMCMC-1.1-3/scapeMCMC/data/xmcmc.rda |only
scapeMCMC-1.1-3/scapeMCMC/data/xproj.rda |only
scapeMCMC-1.1-3/scapeMCMC/inst/doc/dsc-vignette.pdf |binary
scapeMCMC-1.1-3/scapeMCMC/inst/doc/gallery.pdf |binary
scapeMCMC-1.1-3/scapeMCMC/man/plotAuto.Rd | 2 +-
scapeMCMC-1.1-3/scapeMCMC/man/plotCumu.Rd | 2 +-
scapeMCMC-1.1-3/scapeMCMC/man/plotDens.Rd | 2 +-
scapeMCMC-1.1-3/scapeMCMC/man/plotQuant.Rd | 2 +-
scapeMCMC-1.1-3/scapeMCMC/man/plotSplom.Rd | 2 +-
scapeMCMC-1.1-3/scapeMCMC/man/plotTrace.Rd | 2 +-
scapeMCMC-1.1-3/scapeMCMC/man/scapeMCMC-package.Rd | 2 +-
scapeMCMC-1.1-3/scapeMCMC/man/xmcmc.Rd | 2 +-
scapeMCMC-1.1-3/scapeMCMC/man/xproj.Rd | 2 +-
21 files changed, 30 insertions(+), 14 deletions(-)
Title: Neural Networks in R using the Stuttgart Neural Network
Simulator (SNNS)
Diff between RSNNS versions 0.4-1 dated 2011-07-28 and 0.4-2 dated 2011-09-30
Description: The Stuttgart Neural Network Simulator (SNNS) is a library
containing many standard implementations of neural networks.
This package wraps the SNNS functionality to make it available
from within R. Using the RSNNS low-level interface, all of the
algorithmic functionality and flexibility of SNNS can be
accessed. Furthermore, the package contains a convenient
high-level interface, so that the most common neural network
topologies and learning algorithms integrate seamlessly into R.
Author: Christoph Bergmeir
Maintainer: Christoph Bergmeir
RSNNS-0.4-1/RSNNS/inst/doc/SNNSv4.2.Manual.pdf |only
RSNNS-0.4-2/RSNNS/ChangeLog | 12 ++++++++----
RSNNS-0.4-2/RSNNS/DESCRIPTION | 10 +++++-----
RSNNS-0.4-2/RSNNS/MD5 |only
RSNNS-0.4-2/RSNNS/inst/CITATION | 6 +++---
5 files changed, 16 insertions(+), 12 deletions(-)
Title: Seamless R and C++ Integration
Diff between Rcpp versions 0.9.6 dated 2011-07-27 and 0.9.7 dated 2011-09-30
Description: The Rcpp package provides a C++ library which facilitates
the integration of R and C++.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ... The "Rcpp-introduction" vignette
provides a good entry point to Rcpp.
Conversion from C++ to R and back is driven by the templates Rcpp::wrap
and Rcpp::as which are highly flexible and extensible, as
documented in the "Rcpp-extending" vignette.
Rcpp also provides Rcpp modules, a framework that allows exposing C++
functions and classes to the R level. The "Rcpp-modules"
vignette details the current set of features of Rcpp-modules.
Rcpp includes a concept called Rcpp sugar that brings many R functions
into C++. Sugar takes advantage of lazy evaluation and
expression templates to achieve great performance while
exposing a syntax that is much nicer to use than the equivalent
low-level loop code. The "Rcpp-sugar" vignette gives an
overview of the feature.
Several examples are included, and 753 unit tests in 338 unit test
functions provide additional usage examples.
An earlier version of Rcpp, containing what we now call the 'classic
Rcpp API' was written during 2005 and 2006 by Dominick Samperi.
This code has been factored out of Rcpp into the package
RcppClassic and it is still available for code relying on this
interface. New development should use this package instead.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel and Romain Francois
Rcpp-0.9.6/Rcpp/inst/examples/Fibonacci |only
Rcpp-0.9.7/Rcpp/ChangeLog | 64
Rcpp-0.9.7/Rcpp/DESCRIPTION | 8
Rcpp-0.9.7/Rcpp/MD5 |only
Rcpp-0.9.7/Rcpp/inst/NEWS | 24
Rcpp-0.9.7/Rcpp/inst/THANKS | 1
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-FAQ/Rcpp-FAQ.Rnw | 42
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-extending.pdf |binary
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-extending/Rcpp-extending.Rnw | 4
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-introduction.Rnw | 2
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-introduction.pdf |binary
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-modules.pdf |binary
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-package.pdf |binary
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-quickref.pdf |binary
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-sugar.pdf |binary
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-sugar/Rcpp-sugar.Rnw | 9
Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary
Rcpp-0.9.7/Rcpp/inst/doc/notyet/Rcpp-api.Rnw | 2
Rcpp-0.9.7/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.html | 22
Rcpp-0.9.7/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.txt | 45
Rcpp-0.9.7/Rcpp/inst/examples/Misc |only
Rcpp-0.9.7/Rcpp/inst/examples/OpenMP/OpenMPandInline.r |only
Rcpp-0.9.7/Rcpp/inst/include/Rcpp.h | 2
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/DataFrame.h | 86
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/DataFrame_generated.h | 143
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/DateVector.h | 63
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/DatetimeVector.h | 63
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Dimension.h | 16
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/DottedPair.h | 8
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Environment.h | 688
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Evaluator.h | 16
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Extractor.h | 6
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Formula.h | 26
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Function.h | 126
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Language.h | 320
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Module.h | 1394 -
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Pairlist.h | 28
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Promise.h | 62
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/RObject.h | 486
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Reference.h | 180
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/S4.h | 96
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Symbol.h | 46
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/WeakReference.h | 62
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/as.h | 106
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/config.h | 2
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/internal/export.h | 212
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/module/Module_Field.h | 116
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/module/Module_Property.h | 382
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/module/Module_generated_CppFunction.h | 7839 ++++------
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/r_cast.h | 52
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/Range.h | 120
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/block/SugarBlock_1.h | 46
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/block/SugarBlock_2.h | 223
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/block/SugarBlock_3.h | 76
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/block/Vectorized_Math.h | 92
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/functions/math.h | 10
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/matrix/outer.h | 84
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/traits/Exporter.h | 164
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/00_forward_eval_methods.h | 62
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/LazyVector.h | 65
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/Matrix.h | 316
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/MatrixBase.h | 288
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/MatrixColumn.h | 124
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/MatrixRow.h | 261
Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/Vector.h | 1502 -
Rcpp-0.9.7/Rcpp/inst/include/RcppCommon.h | 129
Rcpp-0.9.7/Rcpp/inst/unitTests/runit.Function.R | 26
Rcpp-0.9.7/Rcpp/inst/unitTests/testRcppModule/src/stdVector.cpp | 14
Rcpp-0.9.7/Rcpp/src/Date.cpp | 2
Rcpp-0.9.7/Rcpp/src/DateVector.cpp | 118
Rcpp-0.9.7/Rcpp/src/DatetimeVector.cpp | 118
Rcpp-0.9.7/Rcpp/src/Dimension.cpp | 102
Rcpp-0.9.7/Rcpp/src/DottedPair.cpp | 103
Rcpp-0.9.7/Rcpp/src/Environment.cpp | 336
Rcpp-0.9.7/Rcpp/src/Evaluator.cpp | 103
Rcpp-0.9.7/Rcpp/src/Formula.cpp | 92
Rcpp-0.9.7/Rcpp/src/Function.cpp | 82
Rcpp-0.9.7/Rcpp/src/Language.cpp | 114
Rcpp-0.9.7/Rcpp/src/Pairlist.cpp | 30
Rcpp-0.9.7/Rcpp/src/Promise.cpp | 72
Rcpp-0.9.7/Rcpp/src/RObject.cpp | 312
Rcpp-0.9.7/Rcpp/src/Reference.cpp | 134
Rcpp-0.9.7/Rcpp/src/S4.cpp | 150
Rcpp-0.9.7/Rcpp/src/Symbol.cpp | 66
Rcpp-0.9.7/Rcpp/src/WeakReference.cpp | 52
Rcpp-0.9.7/Rcpp/src/r_cast.cpp | 277
87 files changed, 9393 insertions(+), 9321 deletions(-)
Title: Quality Control Charts
Diff between qcc versions 2.0.1 dated 2010-04-20 and 2.2 dated 2011-09-30
Description: Shewhart quality control charts for continuous, attribute
and count data. Cusum and EWMA charts. Operating characteristic
curves. Process capability analysis. Pareto chart and
cause-and-effect chart. Multivariate control charts.
Author: Luca Scrucca
Maintainer: Luca Scrucca
qcc-2.0.1/qcc/COPYING |only
qcc-2.0.1/qcc/INDEX |only
qcc-2.0.1/qcc/data/boiler.txt |only
qcc-2.0.1/qcc/data/circuit.txt |only
qcc-2.0.1/qcc/data/dyedcloth.txt |only
qcc-2.0.1/qcc/data/orangejuice.txt |only
qcc-2.0.1/qcc/data/orangejuice2.txt |only
qcc-2.0.1/qcc/data/pcmanufact.txt |only
qcc-2.0.1/qcc/data/pistonrings.txt |only
qcc-2.0.1/qcc/man/process.capability.sixpack.Rd |only
qcc-2.2/qcc/CHANGES | 21 ++---
qcc-2.2/qcc/DESCRIPTION | 10 +-
qcc-2.2/qcc/LICENCE |only
qcc-2.2/qcc/MD5 |only
qcc-2.2/qcc/Misc |only
qcc-2.2/qcc/R/capability.R | 98 ------------------------
qcc-2.2/qcc/R/paretochart.R | 33 +++-----
qcc-2.2/qcc/R/utilities.R | 4
qcc-2.2/qcc/data/boiler.txt.gz |only
qcc-2.2/qcc/data/circuit.txt.gz |only
qcc-2.2/qcc/data/dyedcloth.txt.gz |only
qcc-2.2/qcc/data/orangejuice.txt.gz |only
qcc-2.2/qcc/data/orangejuice2.txt.gz |only
qcc-2.2/qcc/data/pcmanufact.txt.gz |only
qcc-2.2/qcc/data/pistonrings.txt.gz |only
qcc-2.2/qcc/inst/CITATION | 2
qcc-2.2/qcc/man/mqcc.Rd | 2
qcc-2.2/qcc/man/pareto.chart.Rd | 8 +
qcc-2.2/qcc/man/process.capability.Rd | 2
qcc-2.2/qcc/man/qcc-package.Rd | 2
30 files changed, 43 insertions(+), 139 deletions(-)
Title: MATLAB emulation package
Diff between matlab versions 0.8.8 dated 2011-09-14 and 0.8.9 dated 2011-09-30
Description: Emulate MATLAB code using R
Author: P. Roebuck
Maintainer: P. Roebuck
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 10 +++++++++-
R/zzz.R | 27 +++++++++++++++------------
man/matlab-package.Rd | 4 ++--
5 files changed, 34 insertions(+), 23 deletions(-)
Title: distances and routes on geographical grids
Diff between gdistance versions 1.1-1 dated 2011-01-09 and 1.1-2 dated 2011-09-30
Description: Calculate distances and routes on geographic grids.
Author: Jacob van Etten
Maintainer: Jacob van Etten
ChangeLog |only
DESCRIPTION | 26 ++++---
MD5 |only
R/Summary-methods.R |only
R/Transition-class.R | 5 -
R/Transition-extract-replace.R | 10 ++
R/Transition-methods.R | 61 -----------------
R/accCost.R | 2
R/adjacency.R |only
R/geoCorrection.R | 8 +-
R/internal-functions.R | 23 ++++--
R/pathInc.R | 89 ++++++++++++++++---------
R/shortestPath.R | 22 +++++-
R/summary.R | 13 +++
R/transition.R | 132 +++++++++++++++++++++++++++++++-------
data/genDist.RData |binary
data/popCoord.RData |binary
inst/doc/gdistance-vignette.Rnw | 2
inst/doc/gdistance-vignette.pdf |binary
man/Transition-extract-replace.Rd | 2
man/Transition-slots.Rd | 3
man/adjacency.Rd |only
man/gdistance-package.Rd | 2
man/geoCorrection.Rd | 10 +-
man/probPassage.Rd | 14 ++--
man/shortestPath.Rd | 38 +++++-----
man/summary-methods.Rd |only
man/transition.Rd | 58 ++++++++++++++--
28 files changed, 336 insertions(+), 184 deletions(-)