Title: Functions to access vegetation databases (Turboveg and VegetWeb)
and prepare data for analysis
Description: Handling of vegetation data sets from personal Turboveg or
online VegetWeb Databases. Taxonomic harmonization of datasets
with the help of the German taxonomical standard list
"GermanSL".
Author: Florian Jansen
Maintainer: Florian Jansen
Diff between vegdata versions 0.3.2 dated 2011-07-02 and 0.4 dated 2011-09-30
vegdata-0.3.2/vegdata/R/child.r |only vegdata-0.3.2/vegdata/R/vw.biblio.r |only vegdata-0.3.2/vegdata/R/zzz.r |only vegdata-0.3.2/vegdata/inst/tvdata/Species/GermanSL1.2 |only vegdata-0.3.2/vegdata/man/agg.Rd |only vegdata-0.3.2/vegdata/man/tv.Biblio.Rd |only vegdata-0.3.2/vegdata/man/tv.Comprefl.Rd |only vegdata-0.3.2/vegdata/man/tv.Coverperc.Rd |only vegdata-0.3.2/vegdata/man/tv.Eco.Rd |only vegdata-0.3.2/vegdata/man/tv.Metainfo.Rd |only vegdata-0.3.2/vegdata/man/tv.Mono.Rd |only vegdata-0.3.2/vegdata/man/tv.Obs.Rd |only vegdata-0.3.2/vegdata/man/tv.Site.Rd |only vegdata-0.3.2/vegdata/man/tv.Veg.Rd |only vegdata-0.3.2/vegdata/man/tv.Write.Rd |only vegdata-0.4/vegdata/DESCRIPTION | 16 - vegdata-0.4/vegdata/MD5 |only vegdata-0.4/vegdata/NAMESPACE |only vegdata-0.4/vegdata/R/comb.species.r |only vegdata-0.4/vegdata/R/tax.r | 230 ++++++++++++++--- vegdata-0.4/vegdata/R/taxval.r | 231 +++++++++--------- vegdata-0.4/vegdata/R/tv.biblio.r | 4 vegdata-0.4/vegdata/R/tv.coverperc.r | 2 vegdata-0.4/vegdata/R/tv.home.r | 28 -- vegdata-0.4/vegdata/R/tv.metainfo.r | 2 vegdata-0.4/vegdata/R/tv.mono.r | 9 vegdata-0.4/vegdata/R/tv.obs.r | 2 vegdata-0.4/vegdata/R/tv.refl.r | 9 vegdata-0.4/vegdata/R/tv.site.r | 4 vegdata-0.4/vegdata/R/tv.veg.r | 32 +- vegdata-0.4/vegdata/R/vegetweb.r | 67 ++--- vegdata-0.4/vegdata/inst/ChangeLog | 9 vegdata-0.4/vegdata/inst/doc/SweaveC.sty |only vegdata-0.4/vegdata/inst/doc/ecol_let.bst |only vegdata-0.4/vegdata/inst/doc/gVis.jpg |only vegdata-0.4/vegdata/inst/doc/vegdata.Rnw |only vegdata-0.4/vegdata/inst/doc/vegdata.bib |only vegdata-0.4/vegdata/inst/doc/vegdata.pdf |binary vegdata-0.4/vegdata/inst/doc/veronica.png |only vegdata-0.4/vegdata/inst/tvdata/Data/taxatest |only vegdata-0.4/vegdata/inst/tvdata/Species/README |only vegdata-0.4/vegdata/man/tax.Rd | 22 + vegdata-0.4/vegdata/man/taxval.Rd | 15 - vegdata-0.4/vegdata/man/tv.biblio.Rd |only vegdata-0.4/vegdata/man/tv.comprefl.Rd |only vegdata-0.4/vegdata/man/tv.coverperc.Rd |only vegdata-0.4/vegdata/man/tv.eco.Rd |only vegdata-0.4/vegdata/man/tv.metainfo.Rd |only vegdata-0.4/vegdata/man/tv.mono.Rd |only vegdata-0.4/vegdata/man/tv.obs.Rd |only vegdata-0.4/vegdata/man/tv.site.Rd |only vegdata-0.4/vegdata/man/tv.veg.Rd |only vegdata-0.4/vegdata/man/tv.write.Rd |only vegdata-0.4/vegdata/man/vegdata-package.Rd | 3 vegdata-0.4/vegdata/man/vegetweb.Rd | 14 - 55 files changed, 434 insertions(+), 265 deletions(-)
Title: R object-oriented programming with or without references
Description: Methods and classes for object-oriented programming in R
with or without references. Large effort has been made on
making definition of methods as simple as possible with a
minimum of maintenance for package developers. The package has
been developed since 2001 and is now considered very stable.
This is a cross-platform package implemented in pure R that
defines standard S3 classes without any tricks.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
Diff between R.oo versions 1.8.1 dated 2011-07-23 and 1.8.2 dated 2011-09-30
DESCRIPTION | 8 ++++---- MD5 |only R/040.setConstructorS3.R | 41 +++++++++++++++++++++++++++-------------- R/Rdoc.R | 8 +++++--- inst/NEWS | 6 ++++++ man/setConstructorS3.Rd | 41 +++++++++++++++++++++++++++-------------- 6 files changed, 69 insertions(+), 35 deletions(-)
Title: Maximum Likelihood Difference Scaling
Description: Difference scaling is a method for scaling perceived
supra-threshold differences. The package contains functions
that allow the user to design and run a difference scaling
experiment, to fit the resulting data by maximum likelihood and
test the internal validity of the estimated scale.
Author: Kenneth Knoblauch and Laurence T. Maloney, based in part on C
code written by Laurence T. Maloney and J. N. Yang
Maintainer: Ken Knoblauch
Diff between MLDS versions 0.3-0 dated 2011-04-23 and 0.3-1 dated 2011-09-30
DESCRIPTION | 8 ++++---- MD5 |only R/mlds.R | 9 +++++---- inst/NEWS | 6 ++++++ inst/doc/Figures/KM_JSS-002.pdf |binary inst/doc/Figures/KM_JSS-003.pdf |binary inst/doc/Figures/KM_JSS-015.pdf |binary inst/doc/Figures/KM_JSS-019.pdf |binary inst/doc/Figures/KM_JSS-020.pdf |binary inst/doc/Figures/KM_JSS-021.pdf |binary inst/doc/MLDS.Stex | 17 +++++++++++++++-- inst/doc/MLDS.bib | 20 +++++++++++++++++++- inst/doc/MLDS.pdf |binary man/mlds.Rd | 9 ++++++--- 14 files changed, 55 insertions(+), 14 deletions(-)
Title: Importing and working with OpenStreetMap-Data
Description: This package imports the (Spatial and Non-Spatial) Data of
OpenStreetMap into objects of R by using the OSM-API v0.6. For
now it is reduced on using various commands of type "GET", like
getting data of an explicit element or a region defined by
coordinates. It also includes some methods on working with the
newly created objects.
Author: Thomas Schlesinger and Manuel Eugster
Maintainer: Thomas Schlesinger
Diff between osmar versions 1.0 dated 2011-09-01 and 1.0-01 dated 2011-09-30
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- R/getOSMObject.R | 2 +- R/node2SPDF.R | 2 +- R/way2SLDF.R | 2 +- man/findKeyValue.Rd | 2 +- man/getBboxXML.Rd | 2 +- man/getOSMObject.Rd | 2 +- 8 files changed, 19 insertions(+), 19 deletions(-)
Title: MCMC Diagnostic Plots
Description: Markov chain Monte Carlo diagnostic plots. The purpose of
the package is to combine existing tools from the 'coda' and
'lattice' packages, and make it easy to adjust graphical
details. It can be useful for anyone using MCMC analysis,
regardless of the application.
Author: Arni Magnusson and Ian Stewart
Maintainer: Arni Magnusson
Diff between scapeMCMC versions 1.1-2 dated 2011-02-10 and 1.1-3 dated 2011-09-30
scapeMCMC-1.1-2/scapeMCMC/data/xmcmc.R |only scapeMCMC-1.1-2/scapeMCMC/data/xproj.R |only scapeMCMC-1.1-3/scapeMCMC/DESCRIPTION | 10 +++++----- scapeMCMC-1.1-3/scapeMCMC/MD5 |only scapeMCMC-1.1-3/scapeMCMC/NEWS | 8 ++++++++ scapeMCMC-1.1-3/scapeMCMC/R/plotQuant.R | 4 ++++ scapeMCMC-1.1-3/scapeMCMC/R/plotSplom.R | 4 ++++ scapeMCMC-1.1-3/scapeMCMC/data/datalist |only scapeMCMC-1.1-3/scapeMCMC/data/xmcmc.rda |only scapeMCMC-1.1-3/scapeMCMC/data/xproj.rda |only scapeMCMC-1.1-3/scapeMCMC/inst/doc/dsc-vignette.pdf |binary scapeMCMC-1.1-3/scapeMCMC/inst/doc/gallery.pdf |binary scapeMCMC-1.1-3/scapeMCMC/man/plotAuto.Rd | 2 +- scapeMCMC-1.1-3/scapeMCMC/man/plotCumu.Rd | 2 +- scapeMCMC-1.1-3/scapeMCMC/man/plotDens.Rd | 2 +- scapeMCMC-1.1-3/scapeMCMC/man/plotQuant.Rd | 2 +- scapeMCMC-1.1-3/scapeMCMC/man/plotSplom.Rd | 2 +- scapeMCMC-1.1-3/scapeMCMC/man/plotTrace.Rd | 2 +- scapeMCMC-1.1-3/scapeMCMC/man/scapeMCMC-package.Rd | 2 +- scapeMCMC-1.1-3/scapeMCMC/man/xmcmc.Rd | 2 +- scapeMCMC-1.1-3/scapeMCMC/man/xproj.Rd | 2 +- 21 files changed, 30 insertions(+), 14 deletions(-)
Title: Neural Networks in R using the Stuttgart Neural Network
Simulator (SNNS)
Description: The Stuttgart Neural Network Simulator (SNNS) is a library
containing many standard implementations of neural networks.
This package wraps the SNNS functionality to make it available
from within R. Using the RSNNS low-level interface, all of the
algorithmic functionality and flexibility of SNNS can be
accessed. Furthermore, the package contains a convenient
high-level interface, so that the most common neural network
topologies and learning algorithms integrate seamlessly into R.
Author: Christoph Bergmeir
Maintainer: Christoph Bergmeir
Diff between RSNNS versions 0.4-1 dated 2011-07-28 and 0.4-2 dated 2011-09-30
RSNNS-0.4-1/RSNNS/inst/doc/SNNSv4.2.Manual.pdf |only RSNNS-0.4-2/RSNNS/ChangeLog | 12 ++++++++---- RSNNS-0.4-2/RSNNS/DESCRIPTION | 10 +++++----- RSNNS-0.4-2/RSNNS/MD5 |only RSNNS-0.4-2/RSNNS/inst/CITATION | 6 +++--- 5 files changed, 16 insertions(+), 12 deletions(-)
Title: Seamless R and C++ Integration
Description: The Rcpp package provides a C++ library which facilitates
the integration of R and C++.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ... The "Rcpp-introduction" vignette
provides a good entry point to Rcpp.
Conversion from C++ to R and back is driven by the templates Rcpp::wrap
and Rcpp::as which are highly flexible and extensible, as
documented in the "Rcpp-extending" vignette.
Rcpp also provides Rcpp modules, a framework that allows exposing C++
functions and classes to the R level. The "Rcpp-modules"
vignette details the current set of features of Rcpp-modules.
Rcpp includes a concept called Rcpp sugar that brings many R functions
into C++. Sugar takes advantage of lazy evaluation and
expression templates to achieve great performance while
exposing a syntax that is much nicer to use than the equivalent
low-level loop code. The "Rcpp-sugar" vignette gives an
overview of the feature.
Several examples are included, and 753 unit tests in 338 unit test
functions provide additional usage examples.
An earlier version of Rcpp, containing what we now call the 'classic
Rcpp API' was written during 2005 and 2006 by Dominick Samperi.
This code has been factored out of Rcpp into the package
RcppClassic and it is still available for code relying on this
interface. New development should use this package instead.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel and Romain Francois
Diff between Rcpp versions 0.9.6 dated 2011-07-27 and 0.9.7 dated 2011-09-30
Rcpp-0.9.6/Rcpp/inst/examples/Fibonacci |only Rcpp-0.9.7/Rcpp/ChangeLog | 64 Rcpp-0.9.7/Rcpp/DESCRIPTION | 8 Rcpp-0.9.7/Rcpp/MD5 |only Rcpp-0.9.7/Rcpp/inst/NEWS | 24 Rcpp-0.9.7/Rcpp/inst/THANKS | 1 Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-FAQ/Rcpp-FAQ.Rnw | 42 Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-extending.pdf |binary Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-extending/Rcpp-extending.Rnw | 4 Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-introduction.Rnw | 2 Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-introduction.pdf |binary Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-modules.pdf |binary Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-package.pdf |binary Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-quickref.pdf |binary Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-sugar.pdf |binary Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-sugar/Rcpp-sugar.Rnw | 9 Rcpp-0.9.7/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary Rcpp-0.9.7/Rcpp/inst/doc/notyet/Rcpp-api.Rnw | 2 Rcpp-0.9.7/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.html | 22 Rcpp-0.9.7/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.txt | 45 Rcpp-0.9.7/Rcpp/inst/examples/Misc |only Rcpp-0.9.7/Rcpp/inst/examples/OpenMP/OpenMPandInline.r |only Rcpp-0.9.7/Rcpp/inst/include/Rcpp.h | 2 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/DataFrame.h | 86 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/DataFrame_generated.h | 143 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/DateVector.h | 63 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/DatetimeVector.h | 63 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Dimension.h | 16 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/DottedPair.h | 8 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Environment.h | 688 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Evaluator.h | 16 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Extractor.h | 6 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Formula.h | 26 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Function.h | 126 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Language.h | 320 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Module.h | 1394 - Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Pairlist.h | 28 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Promise.h | 62 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/RObject.h | 486 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Reference.h | 180 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/S4.h | 96 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/Symbol.h | 46 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/WeakReference.h | 62 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/as.h | 106 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/config.h | 2 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/internal/export.h | 212 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/module/Module_Field.h | 116 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/module/Module_Property.h | 382 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/module/Module_generated_CppFunction.h | 7839 ++++------ Rcpp-0.9.7/Rcpp/inst/include/Rcpp/r_cast.h | 52 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/Range.h | 120 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/block/SugarBlock_1.h | 46 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/block/SugarBlock_2.h | 223 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/block/SugarBlock_3.h | 76 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/block/Vectorized_Math.h | 92 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/functions/math.h | 10 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/sugar/matrix/outer.h | 84 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/traits/Exporter.h | 164 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/00_forward_eval_methods.h | 62 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/LazyVector.h | 65 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/Matrix.h | 316 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/MatrixBase.h | 288 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/MatrixColumn.h | 124 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/MatrixRow.h | 261 Rcpp-0.9.7/Rcpp/inst/include/Rcpp/vector/Vector.h | 1502 - Rcpp-0.9.7/Rcpp/inst/include/RcppCommon.h | 129 Rcpp-0.9.7/Rcpp/inst/unitTests/runit.Function.R | 26 Rcpp-0.9.7/Rcpp/inst/unitTests/testRcppModule/src/stdVector.cpp | 14 Rcpp-0.9.7/Rcpp/src/Date.cpp | 2 Rcpp-0.9.7/Rcpp/src/DateVector.cpp | 118 Rcpp-0.9.7/Rcpp/src/DatetimeVector.cpp | 118 Rcpp-0.9.7/Rcpp/src/Dimension.cpp | 102 Rcpp-0.9.7/Rcpp/src/DottedPair.cpp | 103 Rcpp-0.9.7/Rcpp/src/Environment.cpp | 336 Rcpp-0.9.7/Rcpp/src/Evaluator.cpp | 103 Rcpp-0.9.7/Rcpp/src/Formula.cpp | 92 Rcpp-0.9.7/Rcpp/src/Function.cpp | 82 Rcpp-0.9.7/Rcpp/src/Language.cpp | 114 Rcpp-0.9.7/Rcpp/src/Pairlist.cpp | 30 Rcpp-0.9.7/Rcpp/src/Promise.cpp | 72 Rcpp-0.9.7/Rcpp/src/RObject.cpp | 312 Rcpp-0.9.7/Rcpp/src/Reference.cpp | 134 Rcpp-0.9.7/Rcpp/src/S4.cpp | 150 Rcpp-0.9.7/Rcpp/src/Symbol.cpp | 66 Rcpp-0.9.7/Rcpp/src/WeakReference.cpp | 52 Rcpp-0.9.7/Rcpp/src/r_cast.cpp | 277 87 files changed, 9393 insertions(+), 9321 deletions(-)
Title: Quality Control Charts
Description: Shewhart quality control charts for continuous, attribute
and count data. Cusum and EWMA charts. Operating characteristic
curves. Process capability analysis. Pareto chart and
cause-and-effect chart. Multivariate control charts.
Author: Luca Scrucca
Maintainer: Luca Scrucca
Diff between qcc versions 2.0.1 dated 2010-04-20 and 2.2 dated 2011-09-30
qcc-2.0.1/qcc/COPYING |only qcc-2.0.1/qcc/INDEX |only qcc-2.0.1/qcc/data/boiler.txt |only qcc-2.0.1/qcc/data/circuit.txt |only qcc-2.0.1/qcc/data/dyedcloth.txt |only qcc-2.0.1/qcc/data/orangejuice.txt |only qcc-2.0.1/qcc/data/orangejuice2.txt |only qcc-2.0.1/qcc/data/pcmanufact.txt |only qcc-2.0.1/qcc/data/pistonrings.txt |only qcc-2.0.1/qcc/man/process.capability.sixpack.Rd |only qcc-2.2/qcc/CHANGES | 21 ++--- qcc-2.2/qcc/DESCRIPTION | 10 +- qcc-2.2/qcc/LICENCE |only qcc-2.2/qcc/MD5 |only qcc-2.2/qcc/Misc |only qcc-2.2/qcc/R/capability.R | 98 ------------------------ qcc-2.2/qcc/R/paretochart.R | 33 +++----- qcc-2.2/qcc/R/utilities.R | 4 qcc-2.2/qcc/data/boiler.txt.gz |only qcc-2.2/qcc/data/circuit.txt.gz |only qcc-2.2/qcc/data/dyedcloth.txt.gz |only qcc-2.2/qcc/data/orangejuice.txt.gz |only qcc-2.2/qcc/data/orangejuice2.txt.gz |only qcc-2.2/qcc/data/pcmanufact.txt.gz |only qcc-2.2/qcc/data/pistonrings.txt.gz |only qcc-2.2/qcc/inst/CITATION | 2 qcc-2.2/qcc/man/mqcc.Rd | 2 qcc-2.2/qcc/man/pareto.chart.Rd | 8 + qcc-2.2/qcc/man/process.capability.Rd | 2 qcc-2.2/qcc/man/qcc-package.Rd | 2 30 files changed, 43 insertions(+), 139 deletions(-)
Title: MATLAB emulation package
Description: Emulate MATLAB code using R
Author: P. Roebuck
Maintainer: P. Roebuck
Diff between matlab versions 0.8.8 dated 2011-09-14 and 0.8.9 dated 2011-09-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 10 +++++++++- R/zzz.R | 27 +++++++++++++++------------ man/matlab-package.Rd | 4 ++-- 5 files changed, 34 insertions(+), 23 deletions(-)
Title: distances and routes on geographical grids
Description: Calculate distances and routes on geographic grids.
Author: Jacob van Etten
Maintainer: Jacob van Etten
Diff between gdistance versions 1.1-1 dated 2011-01-09 and 1.1-2 dated 2011-09-30
ChangeLog |only DESCRIPTION | 26 ++++--- MD5 |only R/Summary-methods.R |only R/Transition-class.R | 5 - R/Transition-extract-replace.R | 10 ++ R/Transition-methods.R | 61 ----------------- R/accCost.R | 2 R/adjacency.R |only R/geoCorrection.R | 8 +- R/internal-functions.R | 23 ++++-- R/pathInc.R | 89 ++++++++++++++++--------- R/shortestPath.R | 22 +++++- R/summary.R | 13 +++ R/transition.R | 132 +++++++++++++++++++++++++++++++------- data/genDist.RData |binary data/popCoord.RData |binary inst/doc/gdistance-vignette.Rnw | 2 inst/doc/gdistance-vignette.pdf |binary man/Transition-extract-replace.Rd | 2 man/Transition-slots.Rd | 3 man/adjacency.Rd |only man/gdistance-package.Rd | 2 man/geoCorrection.Rd | 10 +- man/probPassage.Rd | 14 ++-- man/shortestPath.Rd | 38 +++++----- man/summary-methods.Rd |only man/transition.Rd | 58 ++++++++++++++-- 28 files changed, 336 insertions(+), 184 deletions(-)