Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-04-02 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2006-12-15 0.72-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2007-09-21 0.9-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-05-27 0.1.2
2011-05-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2007-05-30 1.8-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-26 1.14.0
2010-10-26 1.12.0
2010-05-01 1.10.0
2009-11-13 1.8.0
2009-05-10 1.6.0
2005-09-05 0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-06 6.1
2009-11-03 6.0
2006-11-28 5.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-05-02 1.8-0
2007-11-04 1.7-9
2007-10-17 1.7-8
2007-10-08 1.7-7
2007-09-14 1.7-6
2006-10-03 1.7-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-06-27 1.18.1
2008-05-05 1.18.0
2008-01-24 1.16.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2005-01-09 0.4-1
Title:  Traveling Salesperson Problem (TSP)  
Diff between TSP versions 1.0-5 dated 2011-11-10 and 1.0-6 dated 2011-11-29 
Description:  Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and
an interface to Concorde, the currently fastest TSP solver. Concorde
itself is not included in the package and has to be obtained separately. 
Author:  Michael Hahsler and Kurt Hornik 
Maintainer:  Michael Hahsler 
 CHANGES          |    3 +++
 DESCRIPTION      |    8 ++++----
 MD5              |   12 ++++++------
 R/ATSP.R         |    8 ++++++++
 R/TSP.R          |    6 ++++++
 R/read_TSPLIB.R  |   36 +++++++++++++++++++++++++-----------
 inst/doc/TSP.pdf |binary
 7 files changed, 52 insertions(+), 21 deletions(-)
Title:  SMACOF for Multidimensional Scaling.  
Diff between smacof versions 1.2-0 dated 2011-05-26 and 1.2-1 dated 2011-11-29 
Description:  This package provides the following approaches of multidimensional scaling (MDS) based on stress minimization by means of majorization (smacof): Simple smacof on symmetric dissimilarity matrices, smacof for rectangular matrices (unfolding models), smacof with constraints on the configuration, three-way smacof for individual differences (including constraints for idioscal, indscal, and identity), and spherical smacof (primal and dual algorithm). Each of these approaches is implemented in a metric and nonmetric manner including primary, secondary, and tertiary approaches for tie handling. Jackknife and permutation tests are included as well. 
Author:  Jan de Leeuw, Patrick Mair 
Maintainer:  Jan de Leeuw 
 DESCRIPTION            |   24 --
 MD5                    |only
 R/plot.smacof.R        |  271 ++++++++++++++--------------
 R/plot.smacofID.r      |  238 +++++++++++++------------
 R/smacofIndDiff.R      |  458 ++++++++++++++++++++++++-------------------------
 data/EW_eng.rda        |only
 data/EW_ger.rda        |binary
 data/bread.rda         |binary
 data/breakfast.rda     |binary
 data/csrranking.rda    |binary
 data/ekman.rda         |binary
 data/helm.rda          |binary
 data/kinshipdelta.rda  |binary
 data/kinshipscales.rda |binary
 data/partypref.rda     |binary
 data/perception.rda    |binary
 data/rect_constr.rda   |binary
 data/rectangles.rda    |binary
 data/stardist.rda      |binary
 data/trading.rda       |binary
 data/winedat.rda       |binary
 data/wish.rda          |only
 data/wish_ger.rda      |binary
 inst/doc/plotje.pdf    |binary
 inst/doc/shepbfast.pdf |binary
 inst/doc/smacof.pdf    |binary
 man/EW_ger.Rd          |   53 +++--
 man/plot.smacof.rd     |    7 
 man/smacofIndDiff.Rd   |  180 +++++++++----------
 man/wish_ger.Rd        |   53 ++---
 30 files changed, 648 insertions(+), 636 deletions(-)
Title:  A rules engine for R based on Drools  
Diff between Rdrools versions 0.0.1 dated 2011-11-26 and 0.0.2 dated 2011-11-29 
Description:  Rdrools is a rules engine for R based on the popular Java Drools engine 
Author:  SMS Chauhan 
Maintainer:  SMS Chauhan 
 Rdrools-0.0.1/Rdrools/man/rulesConnection.Rd     |only
 Rdrools-0.0.2/Rdrools/DESCRIPTION                |    8 ++--
 Rdrools-0.0.2/Rdrools/MD5                        |   14 ++++----
 Rdrools-0.0.2/Rdrools/NAMESPACE                  |    2 -
 Rdrools-0.0.2/Rdrools/R/Rdrools.R                |   16 ++++-----
 Rdrools-0.0.2/Rdrools/inst/java/drools-0.0.1.jar |binary
 Rdrools-0.0.2/Rdrools/man/Rdrools-package.Rd     |   13 ++++---
 Rdrools-0.0.2/Rdrools/man/rulesSession.Rd        |only
 Rdrools-0.0.2/Rdrools/man/runRules.Rd            |   40 +++++++----------------
 9 files changed, 40 insertions(+), 53 deletions(-)
Title:  Kaplan-Meier multiple imputation for the analysis of cumulative
incidence functions in the competing risks setting  
Diff between kmi versions 0.3-4 dated 2011-05-04 and 0.4 dated 2011-11-29 
Description:  The package performs a Kaplan-Meier multiple imputation to recover the missing potential censoring information from competing risks events, so that standard right-censored methods could be applied to the imputed data sets to perform analyses of the cumulative incidence functions. 
Author:  Arthur Allignol 
Maintainer:  Arthur Allignol 
 ChangeLog                |    7 +++
 DESCRIPTION              |   14 ++-----
 MD5                      |only
 R/kmi.R                  |   39 ++++++++++++++------
 R/kmi.classic.R          |   78 +++++++++++++++++++++++++++++++++-------
 R/kmi.tdc.R              |   89 ++++++++++++++++++++++++++++++++++++++--------
 man/cox.kmi.Rd           |   10 +++++
 man/kmi.Rd               |   32 ++++++++++++----
 tests/test.kmi.R         |   32 ++++++++++++++++
 tests/test.kmi.Rout.save |   90 ++++++++++++++++++++++++++++++++++++++++++++++-
 10 files changed, 332 insertions(+), 59 deletions(-)
Title:  Cluster ensembles  
Diff between clue versions 0.3-42 dated 2011-09-17 and 0.3-43 dated 2011-11-29 
Description:  CLUster Ensembles 
Author:  Kurt Hornik, with contributions from Walter Boehm 
Maintainer:  Kurt Hornik 
 DESCRIPTION                  |    8 ++++----
 MD5                          |   24 ++++++++++++------------
 NAMESPACE                    |    1 +
 R/ensemble.R                 |    2 +-
 R/ultrametric.R              |   14 ++++++++++++++
 data/CKME.rda                |binary
 data/Cassini.rda             |binary
 data/GVME.rda                |binary
 data/GVME_Consensus.rda      |binary
 data/Kinship82.rda           |binary
 data/Kinship82_Consensus.rda |binary
 data/Phonemes.rda            |binary
 inst/doc/clue.pdf            |binary
 13 files changed, 32 insertions(+), 17 deletions(-)
Title:  Convenience functions for arrays  
Diff between arrayhelpers versions 0.75-20111006 dated 2011-10-07 and 0.75-20111128 dated 2011-11-29 
Description:  Some convenient functions to work with arrays 
Author:  C. Beleites 
Maintainer:  C. Beleites 
 arrayhelpers-0.75-20111006/arrayhelpers/man/applycons.Rd                 |only
 arrayhelpers-0.75-20111006/arrayhelpers/man/arrayhelpers-dash-package.Rd |only
 arrayhelpers-0.75-20111006/arrayhelpers/man/arrayhelpers-dot-unittest.Rd |only
 arrayhelpers-0.75-20111128/arrayhelpers/DESCRIPTION                      |   20 -
 arrayhelpers-0.75-20111128/arrayhelpers/MD5                              |   55 ++--
 arrayhelpers-0.75-20111128/arrayhelpers/NAMESPACE                        |   24 -
 arrayhelpers-0.75-20111128/arrayhelpers/R/apply.R                        |    3 
 arrayhelpers-0.75-20111128/arrayhelpers/R/array2df.R                     |    2 
 arrayhelpers-0.75-20111128/arrayhelpers/R/array2vec.R                    |    1 
 arrayhelpers-0.75-20111128/arrayhelpers/R/arrayhelpers.R                 |    9 
 arrayhelpers-0.75-20111128/arrayhelpers/R/colSums.R                      |   18 -
 arrayhelpers-0.75-20111128/arrayhelpers/R/groupsum.R                     |    2 
 arrayhelpers-0.75-20111128/arrayhelpers/R/restoredim.R                   |    2 
 arrayhelpers-0.75-20111128/arrayhelpers/R/rowsum.R                       |    1 
 arrayhelpers-0.75-20111128/arrayhelpers/R/validate.R                     |    2 
 arrayhelpers-0.75-20111128/arrayhelpers/man/array2df.Rd                  |   93 ++++---
 arrayhelpers-0.75-20111128/arrayhelpers/man/array2vec.Rd                 |   52 ++--
 arrayhelpers-0.75-20111128/arrayhelpers/man/arrayhelpers-package.Rd      |only
 arrayhelpers-0.75-20111128/arrayhelpers/man/arrayhelpers.unittest.Rd     |only
 arrayhelpers-0.75-20111128/arrayhelpers/man/colSums.Rd                   |  125 ++++++----
 arrayhelpers-0.75-20111128/arrayhelpers/man/countrows.Rd                 |   28 +-
 arrayhelpers-0.75-20111128/arrayhelpers/man/delold.Rd                    |   21 +
 arrayhelpers-0.75-20111128/arrayhelpers/man/dropdimnames.Rd              |   30 +-
 arrayhelpers-0.75-20111128/arrayhelpers/man/ensuredim.Rd                 |   36 +-
 arrayhelpers-0.75-20111128/arrayhelpers/man/groupsum.Rd                  |   55 +++-
 arrayhelpers-0.75-20111128/arrayhelpers/man/makeNd.Rd                    |   90 ++++---
 arrayhelpers-0.75-20111128/arrayhelpers/man/ndim.Rd                      |   20 +
 arrayhelpers-0.75-20111128/arrayhelpers/man/numericindex.Rd              |   26 +-
 arrayhelpers-0.75-20111128/arrayhelpers/man/rowsum.Rd                    |   51 ++--
 arrayhelpers-0.75-20111128/arrayhelpers/man/stack.Rd                     |   44 ++-
 arrayhelpers-0.75-20111128/arrayhelpers/man/ta.Rd                        |   29 +-
 31 files changed, 518 insertions(+), 321 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-02-26 0.5.4
2010-02-17 0.5.3.1
2010-02-15 0.5.1
2010-02-15 0.5.2.1
2010-02-14 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-25 1.4.5.1
2010-02-24 1.4.5
2008-07-14 1.4.4
2008-07-07 1.4.3
2007-11-17 1.4.2
2007-04-16 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-05-12 1.0.3
2010-05-11 1.0.2
2010-05-06 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2007-01-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2007-10-18 0.6-6
2006-06-19 0.5-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2006-09-18 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-06 0.1.1
2011-02-18 0.1.0
2011-01-03 0.0.7
2010-09-17 0.0.5
2010-09-14 0.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-26 1.28.0
2010-10-26 1.26.0
2010-05-01 1.24.0
2009-11-13 1.22.0
2009-05-10 1.20.0
2008-11-28 1.18.0
2008-10-08 1.17.2
2008-05-05 1.16.0
2008-01-24 1.14.0
2007-06-01 1.12.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-04-27 2.0-22
2008-04-22 2.0-19
2008-04-18 2.0-16
2008-04-17 2.0-15
2008-04-15 2.0-13
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2006-05-06 0.1-10
Title:  Tools for parsing and generating XML within R and S-Plus.  
Diff between XML versions 3.4-3 dated 2011-09-14 and 3.6-0 dated 2011-11-29 
Description:  This package provides many approaches for both reading and creating XML (and HTML)
documents (including DTDs), both local and accessible via HTTP or FTP.  It also offers
access to an XPath "interpreter". 
Author:  Duncan Temple Lang (duncan@wald.ucdavis.edu) 
Maintainer:  Duncan Temple Lang 
 Changes               |   44 ++++++-
 DESCRIPTION           |   13 +-
 INSTALL               |    2 
 MD5                   |   58 +++++----
 NAMESPACE.in          |   11 +
 R/XMLClasses.R        |   24 +++-
 R/hashTree.R          |    4 
 R/readHTMLTable.R     |   31 ++++-
 R/saveXML.R           |   18 ++-
 R/supports.R.in       |    3 
 R/tree.R              |   23 ++-
 R/xmlNodes.R          |   67 ++++++++---
 R/xmlTree.R           |   13 +-
 configure             |   17 ++
 configure.in          |   15 ++
 configure.win         |   10 +
 man/XMLNode-class.Rd  |    1 
 man/addChildren.Rd    |   14 ++
 man/parseXMLAndAdd.Rd |   16 ++
 man/xmlNamespace.Rd   |   20 +++
 man/xmlParent.Rd      |   10 +
 src/ExpatParse.c      |    5 
 src/HTMLParse.c       |   16 ++
 src/Makevars.win      |    2 
 src/NodeGC.c          |only
 src/NodeGC.h          |only
 src/RS_XML.h          |    5 
 src/RUtils.c          |    2 
 src/Utils.c           |   73 ------------
 src/Utils.h           |   21 ---
 src/XMLTree.c         |  294 --------------------------------------------------
 31 files changed, 345 insertions(+), 487 deletions(-)
Title:  VAR Modelling  
Diff between vars versions 1.4-8 dated 2010-08-27 and 1.4-9 dated 2011-11-29 
Description:  Estimation, lag selection, diagnostic testing, forecasting, causality analysis, forecast error variance decomposition and impulse response functions of VAR models and estimation of SVAR/SVEC models. 
Author:  Bernhard Pfaff 
Maintainer:  Bernhard Pfaff 
 vars-1.4-8/vars/tests/CheckCausality.Rout.save |only
 vars-1.4-8/vars/tests/ExamplesTest.Rout.save   |only
 vars-1.4-9/vars/DESCRIPTION                    |   15 ++++++---------
 vars-1.4-9/vars/MD5                            |only
 vars-1.4-9/vars/data/Canada.RData              |binary
 vars-1.4-9/vars/inst/doc/Figures/fig-3.pdf     |binary
 vars-1.4-9/vars/inst/doc/Figures/fig-4.pdf     |binary
 vars-1.4-9/vars/inst/doc/Figures/fig-5.pdf     |binary
 vars-1.4-9/vars/inst/doc/vars.pdf              |binary
 vars-1.4-9/vars/tests/CheckCausality.Rout      |only
 vars-1.4-9/vars/tests/ExamplesTest.Rout        |only
 11 files changed, 6 insertions(+), 9 deletions(-)
Title:  Smooth Estimation of GPD Shape Parameter  
Diff between smoothtail versions 2.0.0 dated 2010-08-31 and 2.0.1 dated 2011-11-29 
Description:  Given independent and identically distributed observations X(1), ..., X(n) from a Generalized Pareto
distribution with shape parameter gamma in [-1,0], this package offers several estimates to compute estimates of gamma.
The estimates are based on the principle of replacing the order statistics by quantiles of a distribution
function based on a log--concave density function. This procedure is justified by the fact that the GPD density
is log--concave for gamma in [-1,0]. 
Author:  Kaspar Rufibach 
Maintainer:  Kaspar Rufibach 
 smoothtail-2.0.0/smoothtail/CHANGES                   |only
 smoothtail-2.0.1/smoothtail/DESCRIPTION               |   28 +++++++-----------
 smoothtail-2.0.1/smoothtail/MD5                       |only
 smoothtail-2.0.1/smoothtail/NAMESPACE                 |only
 smoothtail-2.0.1/smoothtail/NEWS                      |only
 smoothtail-2.0.1/smoothtail/man/falk.Rd               |    2 -
 smoothtail-2.0.1/smoothtail/man/falkMVUE.Rd           |    2 -
 smoothtail-2.0.1/smoothtail/man/generalizedPick.Rd    |    2 -
 smoothtail-2.0.1/smoothtail/man/gpd.Rd                |    2 -
 smoothtail-2.0.1/smoothtail/man/lambdaGenPick.Rd      |    2 -
 smoothtail-2.0.1/smoothtail/man/pickands.Rd           |    2 -
 smoothtail-2.0.1/smoothtail/man/smoothtail-package.Rd |    6 +--
 12 files changed, 21 insertions(+), 25 deletions(-)
Title:  DBI/RJDBC interface to h2 Database  
Diff between RH2 versions 0.1-2.7 dated 2011-10-22 and 0.1-2.8 dated 2011-11-29 
Description:  DBI/RJDBC interface to h2 database. h2 version 1.3.158 is included. 
Author:  G. Grothendieck. Author of h2 is Thomas Mueller. 
Maintainer:  G. Grothendieck 
 RH2-0.1-2.7/RH2/inst/java/h2-1.3.160.jar |only
 RH2-0.1-2.8/RH2/DESCRIPTION              |   11 +++++------
 RH2-0.1-2.8/RH2/MD5                      |    7 ++++---
 RH2-0.1-2.8/RH2/NAMESPACE                |only
 RH2-0.1-2.8/RH2/NEWS                     |    4 ++++
 RH2-0.1-2.8/RH2/inst/java/h2-1.3.162.jar |only
 6 files changed, 13 insertions(+), 9 deletions(-)
Title:  Rcpp integration for Armadillo templated linear algebra library  
Diff between RcppArmadillo versions 0.2.30 dated 2011-11-20 and 0.2.31 dated 2011-11-29 
Description:  R and Armadillo integration using Rcpp
Armadillo is a templated C++ linear algebra library (by Conrad Sanderson)
that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to combine
several operations into one, and to reduce (or eliminate) the need for
temporaries. This is accomplished through recursive templates and template
meta-programming.
This library is useful if C++ has been decided as the language of choice
(due to speed and/or integration capabilities), rather than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 2.3.92). Thus users do not need to
install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++ integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licenses under
the GNU GPL version 2 or later, as is the rest of Rcpp. 
Author:  Romain Francois, Dirk Eddelbuettel and Doug Bates 
Maintainer:  Romain Francois, Dirk Eddelbuettel and Doug Bates
 RcppArmadillo-0.2.30/RcppArmadillo/inst/include/armadillo_bits/Base.hpp               |only
 RcppArmadillo-0.2.30/RcppArmadillo/inst/include/armadillo_bits/BaseCube.hpp           |only
 RcppArmadillo-0.2.30/RcppArmadillo/inst/include/armadillo_bits/arma_static_assert.hpp |only
 RcppArmadillo-0.2.30/RcppArmadillo/inst/include/armadillo_bits/typedef_u64.hpp        |only
 RcppArmadillo-0.2.31/RcppArmadillo/ChangeLog                                          |    6 
 RcppArmadillo-0.2.31/RcppArmadillo/DESCRIPTION                                        |   10 
 RcppArmadillo-0.2.31/RcppArmadillo/MD5                                                |   61 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/NEWS                                          |    8 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo                             |   37 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp          |    2 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp           |  100 -
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp       |    4 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/atlas_bones.hpp        |  311 ---
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/atlas_wrapper.hpp      |only
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp        |   14 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/blas_bones.hpp         |  167 -
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/blas_wrapper.hpp       |only
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp     |   20 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/config.hpp             |    1 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/debug.hpp              |    4 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/diagview_bones.hpp     |    4 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/diagview_meat.hpp      |    2 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/fn_accu.hpp            |    6 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/include_atlas.hpp      |only
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/injector_bones.hpp     |    8 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/lapack_bones.hpp       |  914 +---------
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/lapack_wrapper.hpp     |only
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/mtGlueCube_bones.hpp   |    4 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/mtGlue_bones.hpp       |    4 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/op_dot_meat.hpp        |    6 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/op_pinv_bones.hpp      |   12 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/op_pinv_meat.hpp       |  144 -
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/podarray_meat.hpp      |    7 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/subview_cube_meat.hpp  |  228 +-
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/typedef.hpp            |   10 
 RcppArmadillo-0.2.31/RcppArmadillo/inst/include/armadillo_bits/typedef_blas_int.hpp   |only
 36 files changed, 583 insertions(+), 1511 deletions(-)
Title:  Datasets for the R/qtl book  
Diff between qtlbook versions 0.17-3 dated 2010-01-04 and 0.18-1 dated 2011-11-29 
Description:  Datasets for the book, A Guide to QTL Mapping with R/qtl 
Author:  Karl W Broman 
Maintainer:  Karl W Broman 
 qtlbook-0.17-3/qtlbook/.gitignore           |only
 qtlbook-0.17-3/qtlbook/INDEX                |only
 qtlbook-0.18-1/qtlbook/DESCRIPTION          |   10 +++++-----
 qtlbook-0.18-1/qtlbook/MD5                  |only
 qtlbook-0.18-1/qtlbook/NAMESPACE            |only
 qtlbook-0.18-1/qtlbook/data/ch3a.RData      |binary
 qtlbook-0.18-1/qtlbook/data/ch3b.RData      |binary
 qtlbook-0.18-1/qtlbook/data/ch3c.RData      |binary
 qtlbook-0.18-1/qtlbook/data/gutlength.RData |binary
 qtlbook-0.18-1/qtlbook/data/iron.RData      |binary
 qtlbook-0.18-1/qtlbook/data/myocard.RData   |binary
 qtlbook-0.18-1/qtlbook/data/nf1.RData       |binary
 qtlbook-0.18-1/qtlbook/data/ovar.RData      |binary
 qtlbook-0.18-1/qtlbook/data/trout.RData     |binary
 qtlbook-0.18-1/qtlbook/inst/STATUS.txt      |    9 ++++++++-
 15 files changed, 13 insertions(+), 6 deletions(-)
Title:  Tools for analyzing QTL experiments  
Diff between qtl versions 1.21-2 dated 2011-03-21 and 1.22-21 dated 2011-11-29 
Description:  Analysis of experimental crosses to identify genes (called quantitative trait loci, QTLs) contributing to variation in quantitative traits. 
Author:  Karl W Broman 
Maintainer:  Karl W Broman 
 qtl-1.21-2/qtl/.Rbuildindex.3897                          |only
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 74 files changed, 745 insertions(+), 656 deletions(-)
Title:  Estimating the number of essential genes in a genome  
Diff between negenes versions 0.98-9 dated 2011-03-21 and 0.99-2 dated 2011-11-29 
Description:  Estimating the number of essential genes in a genome on the basis of data from a random transposon mutagenesis experiment, through the use of a Gibbs sampler. 
Author:  Karl W Broman 
Maintainer:  Karl W Broman 
 negenes-0.98-9/negenes/R/zzz.R          |only
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 negenes-0.99-2/negenes/inst/STATUS.txt  |    5 +++++
 7 files changed, 12 insertions(+), 8 deletions(-)
Title:  Multiscale Analysis for Density Functions  
Diff between modehunt versions 1.0.5 dated 2010-08-31 and 1.0.6 dated 2011-11-29 
Description:  Given independent and identically distributed observations X(1), ..., X(n) from a density f,
this package provides five methods to perform a multiscale analysis about f as well as the necessary critical
values. The first method, introduced in Duembgen and Walther (2008), provides simultaneous confidence statements
for the existence and location of local increases (or decreases) of f, based on all intervals I(all) spanned by
any two observations X(j), X(k). The second method approximates the latter approach by using only a subset of
I(all) and is therefore computationally much more efficient, but asymptotically equivalent. Omitting the additive
correction term Gamma in either method offers another two approaches which are more powerful on small scales and
less powerful on large scales, however, not asymptotically minimax optimal anymore. Finally, the block procedure is a
compromise between adding Gamma or not, having intermediate power properties. The latter is again asymptotically
equivalent to the first and was introduced in Rufibach and Walther (2010). 
Author:  Kaspar Rufibach 
Maintainer:  Kaspar Rufibach 
 DESCRIPTION                 |   43 +++++++++++++++++--------------------------
 MD5                         |only
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 NEWS                        |    5 +++++
 man/blocks.Rd               |    2 +-
 man/criticalValuesAll.Rd    |    2 +-
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 man/lin.Rd                  |    2 +-
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 man/modeHunting.Rd          |    2 +-
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 man/modeHuntingBlock.Rd     |    2 +-
 man/modehunt-package.Rd     |    6 +++---
 man/myRound.Rd              |    2 +-
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 15 files changed, 35 insertions(+), 39 deletions(-)
Title:  Model-Based Boosting  
Diff between mboost versions 2.1-0 dated 2011-11-15 and 2.1-1 dated 2011-11-29 
Description:  Functional gradient descent algorithm
(boosting) for optimizing general risk functions utilizing
component-wise (penalised) least squares estimates or regression
trees as base-learners for fitting generalized linear, additive
and interaction models to potentially high-dimensional data. 
Author:  Torsten Hothorn, Peter Buehlmann, Thomas Kneib, Matthias Schmid and
Benjamin Hofner 
Maintainer:  Torsten Hothorn 
 DESCRIPTION                       |    8 
 MD5                               |   44 +--
 NEWS                              |    5 
 R/AAA.R                           |    3 
 R/bl.R                            |    2 
 data/Westbc.rda                   |binary
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 inst/doc/mboost_illustrations.pdf |binary
 inst/india_additive.R             |  144 ++++-----
 inst/india_blackboost.R           |  104 +++----
 inst/india_preproc.R              |  550 +++++++++++++++++++-------------------
 inst/india_stumps.R               |  104 +++----
 inst/india_summary.R              |  424 ++++++++++++++---------------
 inst/india_vcm.R                  |  178 ++++++------
 man/mboost_package.Rd             |    4 
 tests/regtest-gamboost.R          |    2 
 tests/regtest-glmboost.R          |    2 
 23 files changed, 935 insertions(+), 921 deletions(-)
Title:  Estimate a Log-Concave Probability Density from iid Observations  
Diff between logcondens versions 2.0.4 dated 2011-04-24 and 2.0.5 dated 2011-11-29 
Description:  Given independent and identically distributed observations X(1), ..., X(n), this package allows to
compute the maximum likelihood estimator (MLE) of a density as well as a smoothed version of it under the
assumption that the density is log-concave, see Rufibach (2007) and Duembgen and Rufibach (2009). The main
function of the package is 'logConDens' that allows computation of the log-concave MLE and its smoothed version.
In addition, we provide functions to compute (1) the value of the density and distribution function estimates
(MLE and smoothed) at a given point (2) the characterizing functions of the estimator, (3) to sample from
the estimated distribution, (5) to compute a two-sample permutation test based on log-concave densities,
(6) the ROC curve based on log-concave estimates within cases and controls.
Finally, three datasets that have been used to illustrate log-concave density estimation are made available. 
Author:  Kaspar Rufibach 
Maintainer:  Kaspar Rufibach 
 DESCRIPTION                     |   41 +++++++++++++++-------------------------
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 38 files changed, 56 insertions(+), 55 deletions(-)
Title:  Linear Group Fixed Effects  
Diff between lfe versions 1.4-726 dated 2011-11-23 and 1.4-729 dated 2011-11-29 
Description:  Estimate linear models with multiple group fixed effects 
Author:  Simen Gaure, Ragnar Frisch Centre for Economic Research 
Maintainer:  Simen Gaure 
 DESCRIPTION               |    8 
 MD5                       |   16 -
 configure                 |  605 ----------------------------------------------
 inst/doc/CHANGELOG        |    8 
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 src/Makevars              |    2 
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 9 files changed, 108 insertions(+), 641 deletions(-)
Title:  Geographically weighted regression with penalties and diagnostic
tools  
Diff between gwrr versions 0.1-1 dated 2011-11-23 and 0.1-2 dated 2011-11-29 
Description:  Fits geographically weighted regression (GWR) models and uses tools to diagnose collinearity in the GWR models. 
Author:  David Wheeler 
Maintainer:  David Wheeler 
 DESCRIPTION         |    8 ++++----
 MD5                 |   14 +++++++-------
 R/gwr.bw.est.R      |    6 +++---
 R/gwr.est.R         |    4 ++--
 R/gwr.vdp.R         |    4 ++--
 man/gwr.est.Rd      |    4 ++--
 man/gwr.vdp.Rd      |    4 ++--
 man/gwrr-package.Rd |    4 ++--
 8 files changed, 24 insertions(+), 24 deletions(-)
Title:  Model selection and multimodel inference made easy  
Diff between glmulti versions 1.0.2 dated 2011-07-29 and 1.0.3 dated 2011-11-29 
Description:  Automated model selection and model-averaging. Provides a wrapper for glm and similar functions, automatically generating all possible models (under constraints set by the user) with the specified response and explanatory variables, and finding the best models in terms of some Information Criterion (AIC, AICc or BIC).	Can handle very large numbers of candidate models.	Features a Genetic Algorithm to find the best models when an exhaustive screening of the candidates is not feasible. 
Author:  Vincent Calcagno 
Maintainer:  Vincent Calcagno 
 ChangeLog              |    6 +++++
 DESCRIPTION            |   23 +++++++-------------
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 8 files changed, 67 insertions(+), 66 deletions(-)
Title:  R functions for Generalized Simulated Annealing 
Description:  This package searches for global minimum of a very complex non-linear objective function with a very large number of optima. 
Author:  Sylvain Gubian, Yang Xiang, Brian Suomela, Julia Hoeng, PMP SA. 
Maintainer:  Sylvain Gubian 
Diff between GenSA versions 1.0.0 dated 2011-11-26 and 1.0.1 dated 2011-11-29
GenSA-1.0.0/GenSA/configure.ac |only GenSA-1.0.1/GenSA/DESCRIPTION | 8 +++---- GenSA-1.0.1/GenSA/MD5 | 13 +++++------ GenSA-1.0.1/GenSA/NEWS | 7 +++++- GenSA-1.0.1/GenSA/man/GenSA.Rd | 44 +++++++++++++++++---------------------- GenSA-1.0.1/GenSA/src/Caller.cpp | 2 - GenSA-1.0.1/GenSA/src/Engine.cpp | 6 ++--- GenSA-1.0.1/GenSA/src/Utils.cpp | 8 +++++++ 8 files changed, 48 insertions(+), 40 deletions(-)
Title:  Extreme Values in R  
Diff between evir versions 1.7-1 dated 2011-03-21 and 1.7-2 dated 2011-11-29 
Description:  Functions for extreme value theory, which may be
divided into the following groups; exploratory data analysis,
block maxima, peaks over thresholds (univariate and bivariate),
point processes, gev/gpd distributions. 
Author:  S original (EVIS) by Alexander McNeil
Maintainer:  Bernhard Pfaff 
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 18 files changed, 14 insertions(+), 11 deletions(-)
Title:  Neuwirth miscellaenous  
Diff between ENmisc versions 1.2-0 dated 2011-07-25 and 1.2-2 dated 2011-11-29 
Description:  The ENmisc library contains utility function for different purposes:
mtapply and mlapply (multivariate version of tapply and lapply),
wtd.boxplot (a boxplot with weights), and a visual interface
to restructuring mosaic plots. 
Author:  Erich Neuwirth 
Maintainer:  Erich Neuwirth 
 CHANGES.txt         |    4 +++-
 DESCRIPTION         |   18 +++++++++---------
 MD5                 |only
 R/mosaicupanddown.R |    4 ++--
 4 files changed, 14 insertions(+), 12 deletions(-)
Title:  Generic Reproducible Parallel Backend for foreach Loops  
Diff between doRNG versions 1.0.2 dated 2011-10-24 and 1.1 dated 2011-11-29 
Description:  This package provides functions to perform
reproducible parallel foreach loops, using independent
random streams as generated by L'Ecuyer's combined
multiple-recursive generator [L'Ecuyer (1999)]. It
enables to easily convert standard %dopar% loops into
fully reproducible loops, independently of the number
of workers, the task scheduling strategy, or the chosen
parallel environment and associated foreach backend. 
Author:  Renaud Gaujoux 
Maintainer:  Renaud Gaujoux 
 doRNG-1.0.2/doRNG/man/rstream.Rd     |only
 doRNG-1.1/doRNG/DESCRIPTION          |   23 +-
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 doRNG-1.1/doRNG/R/doRNG.R            |  271 +++++++++++++++++------------------
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 doRNG-1.1/doRNG/man/RNGseq.Rd        |   45 ++---
 doRNG-1.1/doRNG/man/doRNG-package.Rd |   39 ++---
 doRNG-1.1/doRNG/man/doRNG.Rd         |   17 +-
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 13 files changed, 217 insertions(+), 225 deletions(-)
Title:  Extension of data.frame for fast indexing, fast ordered joins,
fast assignment, fast grouping and list columns.  
Diff between data.table versions 1.7.3 dated 2011-11-25 and 1.7.4 dated 2011-11-29 
Description:  Enhanced data.frame. Fast indexing, fast ordered joins, fast assignment, fast grouping and list columns in a short and flexible syntax. i and j may be expressions of column names directly, for faster development.  Example: X[Y] is a fast join for large data. 
Author:  M Dowle, T Short, S Lianoglou 
Maintainer:  M Dowle 
 DESCRIPTION                    |    6 +--
 MD5                            |   16 ++++----
 NEWS                           |   23 ++++++++++++
 R/data.table.R                 |   74 ++++++++++++++++++++++++++---------------
 inst/doc/datatable-faq.pdf     |binary
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 inst/tests/tests.Rraw          |   34 ++++++++++++++++++
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 9 files changed, 135 insertions(+), 68 deletions(-)
Title:  Find biomarkers in two-class discrimination problems  
Diff between BioMark versions 0.3.2 dated 2011-10-20 and 0.3.3 dated 2011-11-29 
Description:  The package implements PCLDA, PLSDA, and several t-tests to find those variables that allow for adequate discrimination between two classes. Apart from the usual approaches based on the size of model coefficients, a set of functions is provided that assess the stability of the potential biomarkers under crossvalidation. 
Author:  Ron Wehrens, Pietro Franceschi 
Maintainer:  Ron Wehrens 
 DESCRIPTION      |   15 +++++----------
 MD5              |    6 +++---
 R/biom.options.R |    4 ++++
 R/get.biom.R     |    4 +++-
 4 files changed, 15 insertions(+), 14 deletions(-)
Title:  A Collection of Database, Data Structure, Visualization, and
Utility Functions for R  
Diff between caroline versions 0.6.4 dated 2011-11-20 and 0.6.6 dated 2011-11-29 
Description:  The caroline R library contains dozens of functions useful for:  database migration (dbWriteTable2), database style joins & aggregation (nerge, groupBy & bestBy), data structure conversion (nv, tab2df), legend table making (sstable & leghead), plot annotation (labsegs & mvlabs), data visualization (violins, pies & raPlot), character string manipulation (m & pad), file I/O (write.delim), batch scripting (cmdArgsToVariables) and many more.  The package's greatest contributions lie in the database style merge, aggregation and interface functions as well as in it's extensive use and propagation of row, column and vector names in most functions. 
Author:  David M. Schruth 
Maintainer:  David M. Schruth 
 DESCRIPTION |    6 +++---
 MD5         |    4 ++--
 R/RAy.R     |   12 +++++++++++-
 3 files changed, 16 insertions(+), 6 deletions(-)
Title:  Access Betfair API from R  
Diff between betfairly versions 1.1 dated 2011-09-12 and 1.2 dated 2011-11-29 
Description:  An R interface to the Betfair API. The user can choose the
type of output to be XML, S4 (representing native Betfair SOAP
types), nested list or simplified R objects ready to be used in the
statistical analysis. 
Author:  Vitalie Spinu 
Maintainer:  Vitalie Spinu 
 betfairly-1.1/betfairly/inst/doc                 |only
 betfairly-1.2/betfairly/DESCRIPTION              |   22 +++---
 betfairly-1.2/betfairly/MD5                      |   14 ++--
 betfairly-1.2/betfairly/R/betfair.R              |   20 ++++-
 betfairly-1.2/betfairly/R/classes.R              |    7 ++
 betfairly-1.2/betfairly/R/funcs.R                |   78 ++++++++++++++++++-----
 betfairly-1.2/betfairly/inst/extra/utils.R       |    7 --
 betfairly-1.2/betfairly/man/BF_Prices.Rd         |    6 +
 betfairly-1.2/betfairly/man/betfairly-package.Rd |    9 ++
 9 files changed, 116 insertions(+), 47 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-06-23 0.5
2008-06-23 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-10-01 1.0.2
2010-05-26 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-09-01 0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-05 1.1-4
2011-10-14 1.1-3
2011-08-04 1.1-2
2011-04-04 1.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-07-23 1.1
2011-04-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-07-05 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-06-13 0.1-1
2008-04-30 0.01
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-09-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2006-11-02 1.0-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-01-13 1.0-32
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-26 1.24.0
2010-10-26 1.22.0
2010-05-01 1.20.0
2009-11-13 1.18.0
2009-05-10 1.16.0
2005-11-04 1.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-26 2.8.0
2010-10-26 2.6.0
2010-05-01 2.4.0
2010-02-03 2.2.0
2009-11-13 1.16.0
2009-05-10 1.14.0
2007-12-15 1.9.1
2007-12-08 1.9.0
2006-10-26 1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-02-23 1.1.1
2007-09-01 1.1
2007-08-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2006-10-02 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2007-10-21 1.0.1
2006-02-08 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2004-05-05 1.0-2