Title: Infinitesimally robust estimators for preprocessing omics data
Diff between RobLoxBioC versions 0.8 dated 2011-01-21 and 0.8.2 dated 2012-01-17
Description: Functions for the determination of optimally robust
influence curves and estimators for preprocessing omics data,
in particular gene expression data.
Author: Matthias Kohl
Maintainer: Matthias Kohl
DESCRIPTION | 23 ++--
MD5 |only
R/0AllGeneric.R | 4
RobLoxBioC-Ex.R |only
man/0RobLoxBioC-package.Rd | 10 +
man/KolmogorovMinDist.Rd | 2
man/SimStudies.Rd | 2
man/robloxbioc.Rd | 6 -
tests/Examples/RobLoxBioC-Ex.Rout.save | 168 ++++++++++++++++++---------------
9 files changed, 120 insertions(+), 95 deletions(-)
Title: Methods to convert R data to YAML and back
Diff between yaml versions 2.1.1 dated 2011-12-08 and 2.1.2 dated 2012-01-17
Description: This package implements the libyaml YAML parser and
emitter (http://pyyaml.org/wiki/LibYAML) for R.
Author: Jeremy Stephens
Maintainer: Jeremy Stephens
DESCRIPTION | 11 ++++++-----
MD5 | 11 ++++++-----
inst/CHANGELOG | 3 +++
src/r-ext.c | 1 +
tests/test.yml |only
tests/yaml_load_file_test.R | 20 ++++++++++++--------
tests/yaml_load_test.R | 4 ++++
7 files changed, 32 insertions(+), 18 deletions(-)
Title: Binary R server
Diff between Rserve versions 0.6-6 dated 2011-12-11 and 0.6-7 dated 2012-01-17
Description: Rserve acts as a socket server (TCP/IP or local sockets)
which allows binary requests to be sent to R. Every connection
has a separate workspace and working directory. Client-side
implementations are available for popular languages such as
C/C++ and Java, allowing any application to use facilities of R
without the need of linking to R code. Rserve supports remote
connection, user authentication and file transfer. A simple R
client is included in this package as well.
Author: Simon Urbanek
Maintainer: Simon Urbanek
DESCRIPTION | 21 +++----
MD5 | 79 ++++++++++++++---------------
NAMESPACE |only
NEWS | 12 ++++
R/conn.R | 18 +++---
clients/cxx/Rsrv.h | 4 -
clients/java-new/JRI/test/Makefile | 2
clients/java-new/REXP.java | 2
clients/java-new/REXPDouble.java | 4 +
clients/java-new/REXPFactor.java | 4 +
clients/java-new/REXPGenericVector.java | 42 +++++++++++++++
clients/java-new/REXPInteger.java | 4 +
clients/java-new/REXPJavaReference.java | 2
clients/java-new/REXPList.java | 8 ++
clients/java-new/REXPLogical.java | 4 +
clients/java-new/REXPNull.java | 1
clients/java-new/REXPRaw.java | 4 +
clients/java-new/REXPString.java | 4 +
clients/java-new/REXPSymbol.java | 4 +
clients/java-new/REngine.jar |binary
clients/java-new/Rserve.jar |binary
clients/java-new/Rserve/Rserve.jar |binary
src/Rserv.c | 14 ++---
src/Rsrv.h | 4 -
src/client/cxx/Rsrv.h | 4 -
src/client/java-new/JRI/test/Makefile | 2
src/client/java-new/REXP.java | 2
src/client/java-new/REXPDouble.java | 4 +
src/client/java-new/REXPFactor.java | 4 +
src/client/java-new/REXPGenericVector.java | 42 +++++++++++++++
src/client/java-new/REXPInteger.java | 4 +
src/client/java-new/REXPJavaReference.java | 2
src/client/java-new/REXPList.java | 8 ++
src/client/java-new/REXPLogical.java | 4 +
src/client/java-new/REXPNull.java | 1
src/client/java-new/REXPRaw.java | 4 +
src/client/java-new/REXPString.java | 4 +
src/client/java-new/REXPSymbol.java | 4 +
src/client/java-new/REngine.jar |binary
src/client/java-new/Rserve.jar |binary
src/client/java-new/Rserve/Rserve.jar |binary
41 files changed, 250 insertions(+), 76 deletions(-)
Title: R bindings for Gtk 2.8.0 and above
Diff between RGtk2 versions 2.20.19 dated 2011-10-04 and 2.20.21 dated 2012-01-17
Description: Facilities in the R language for programming graphical
interfaces using Gtk, the Gimp Tool Kit.
Author: Michael Lawrence
Maintainer: Michael Lawrence
RGtk2-2.20.19/RGtk2/aclocal.m4 |only
RGtk2-2.20.19/RGtk2/inst/.Rhistory |only
RGtk2-2.20.21/RGtk2/DESCRIPTION | 6 +-
RGtk2-2.20.21/RGtk2/MD5 | 29 +++++------
RGtk2-2.20.21/RGtk2/R/gdkEnumDefs.R | 73 +++++++++++++++--------------
RGtk2-2.20.21/RGtk2/R/gobject.R | 34 ++++++-------
RGtk2-2.20.21/RGtk2/R/gtkManuals.R | 67 +++++++++++++++++++++-----
RGtk2-2.20.21/RGtk2/R/zzz.R | 18 +++----
RGtk2-2.20.21/RGtk2/demo/drawingArea.R | 4 -
RGtk2-2.20.21/RGtk2/inst/doc/.Rinstignore |only
RGtk2-2.20.21/RGtk2/inst/doc/overview2.pdf |binary
RGtk2-2.20.21/RGtk2/man/GObject.Rd | 14 ++---
RGtk2-2.20.21/RGtk2/man/RGtkDataFrame.Rd | 12 ++--
RGtk2-2.20.21/RGtk2/man/RGtkObject.Rd | 6 +-
RGtk2-2.20.21/RGtk2/man/argInfo.Rd | 2
RGtk2-2.20.21/RGtk2/man/enums-and-flags.Rd | 10 +--
RGtk2-2.20.21/RGtk2/src/Makevars | 2
RGtk2-2.20.21/RGtk2/src/gobject.c | 13 ++---
18 files changed, 165 insertions(+), 125 deletions(-)
Title: Geographic analysis and modeling with raster data
Diff between raster versions 1.9-63 dated 2012-01-15 and 1.9-64 dated 2012-01-17
Description: Reading, writing, manipulating, analyzing and modeling of
gridded spatial data. The package implements basic and
high-level functions, as well as map algebra. Processing of
very large files is supported.
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
ChangeLog | 5 +++++
DESCRIPTION | 10 +++++-----
MD5 | 16 ++++++++--------
R/imageplot2.R | 21 +++++++++++----------
R/layerNames.R | 6 ++++++
R/overlay.R | 2 +-
R/projectRaster.R | 20 +++++++++++++++-----
inst/doc/functions.pdf |binary
inst/doc/rasterfile.pdf |binary
9 files changed, 51 insertions(+), 29 deletions(-)
Title: Flexible parametric survival models
Diff between flexsurv versions 0.1.2 dated 2011-11-09 and 0.1.3 dated 2012-01-17
Description: Flexible parametric models for time-to-event data,
including the Royston-Parmar spline model, generalized gamma
and generalized F distributions. Easily extensible to fit
user-defined parametric distributions.
Author: Christopher Jackson
Maintainer: Christopher Jackson
DESCRIPTION | 13 ++++++++-----
MD5 | 16 ++++++++--------
R/GenF.R | 10 +++++-----
R/GenGamma.R | 8 ++++----
R/Gompertz.R | 2 +-
R/flexsurvreg.R | 25 ++++++++++++++++++++-----
inst/NEWS | 12 ++++++++++++
man/flexsurv-package.Rd | 6 +++---
man/lines.flexsurvreg.Rd | 4 +++-
9 files changed, 64 insertions(+), 32 deletions(-)
Title: Wrapper functions for MAESTRA/MAESPA.
Diff between Maeswrap versions 1.4.8 dated 2011-09-21 and 1.4.9 dated 2012-01-17
Description: A bundle of functions for modifying MAESTRA/MAESPA input
files, reading output files, and visualizing the stand in 3D.
Handy for running sensitivity analyses, scenario analyses, etc.
Author: Remko Duursma
Maintainer: Remko Duursma
DESCRIPTION | 8 ++++----
MD5 | 23 ++++++++++++-----------
NAMESPACE |only
R/Openstand.R | 8 ++++----
R/Plotstand.R | 24 +++++++++++++++---------
R/plottree.R | 6 +++---
R/readPAR.R | 2 +-
R/readmet.R | 5 +++--
R/runmaespa.R | 1 +
data/maeswrapdefinitions.txt.gz |binary
data/runfiletest.csv.gz |binary
man/Plotstand.Rd | 4 +++-
man/replacemetvar.Rd | 6 ++++--
13 files changed, 50 insertions(+), 37 deletions(-)
Title: Companion to Applied Regression
Diff between car versions 2.0-11 dated 2011-08-10 and 2.0-12 dated 2012-01-17
Description: This package accompanies J. Fox and S. Weisberg, An R
Companion to Applied Regression, Second Edition, Sage, 2011.
Author: John Fox [aut, cre], Sanford Weisberg [aut], Douglas Bates
[ctb], David Firth [ctb], Michael Friendly [ctb], Gregor
Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb],
Rafael Laboissiere [ctb], Georges Monette [ctb], Henric Nilsson
[ctb], Derek Ogle [ctb], Brian Ripley [ctb], Achim Zeileis
[ctb]
Maintainer: John Fox
DESCRIPTION | 42 ++++++++++-----
MD5 | 128 ++++++++++++++++++++++++------------------------
NAMESPACE | 4 +
NEWS | 22 +++++++-
R/Anova.R | 8 ++-
R/Ellipse.R | 30 +++++++----
R/compareCoefs.R | 32 ++++++++----
R/deltaMethod.R | 12 ++--
R/linearHypothesis.R | 30 ++++-------
data/AMSsurvey.rda |binary
data/Adler.rda |binary
data/Angell.rda |binary
data/Anscombe.rda |binary
data/Baumann.rda |binary
data/Bfox.rda |binary
data/Blackmoor.rda |binary
data/Burt.rda |binary
data/CanPop.rda |binary
data/Chile.rda |binary
data/Chirot.rda |binary
data/Cowles.rda |binary
data/Davis.rda |binary
data/DavisThin.rda |binary
data/Depredations.rda |binary
data/Duncan.rda |binary
data/Ericksen.rda |binary
data/Florida.rda |binary
data/Freedman.rda |binary
data/Friendly.rda |binary
data/Ginzberg.rda |binary
data/Greene.rda |binary
data/Guyer.rda |binary
data/Hartnagel.rda |binary
data/Highway1.rda |binary
data/Leinhardt.rda |binary
data/Mandel.rda |binary
data/Migration.rda |binary
data/Moore.rda |binary
data/Mroz.rda |binary
data/OBrienKaiser.rda |binary
data/Ornstein.rda |binary
data/Pottery.rda |binary
data/Prestige.rda |binary
data/Quartet.rda |binary
data/Robey.rda |binary
data/SLID.rda |binary
data/Sahlins.rda |binary
data/Salaries.rda |binary
data/Soils.rda |binary
data/States.rda |binary
data/Transact.rda |binary
data/UN.rda |binary
data/USPop.rda |binary
data/Vocab.rda |binary
data/WeightLoss.rda |binary
data/Womenlf.rda |binary
data/Wool.rda |binary
inst/CITATION | 2
man/Anova.Rd | 12 +++-
man/Depredations.Rd | 2
man/Ellipses.Rd | 28 ++++++++--
man/car-package.Rd | 8 +--
man/compareCoefs.Rd | 10 +++
man/deltaMethod.Rd | 2
man/linearHypothesis.Rd | 9 ++-
65 files changed, 234 insertions(+), 147 deletions(-)
Title: Gradient Boosting
Diff between bst versions 0.3-1 dated 2011-06-24 and 0.3-2 dated 2012-01-17
Description: The package contains HingeBoost for binary and multi-class
classification, with unequal misclassification costs for binary
case. Functional gradient descent algorithm to optimize the
hinge loss. The algorithm can fit linear and nonlinear
classifiers.
Author: Zhu Wang
Maintainer: Zhu Wang
DESCRIPTION | 19 +-
MD5 |only
NAMESPACE | 4
NEWS | 8 +
R/balanced.folds.R |only
R/bst.R | 48 +++++-
R/fpartial.R | 7 -
R/mada.R |only
R/mhinge.R | 57 +++++---
R/msvm.R | 362 +++++++++++++++++++++++++++++-----------------------
R/permute.rows.R |only
man/bst-internal.Rd | 2
man/cv.bst.Rd | 10 -
man/cv.mada.Rd |only
man/cv.mhinge.Rd |only
man/cv.msvm.Rd | 25 +--
man/mada.Rd |only
man/mhinge.Rd | 17 +-
man/msvm.Rd | 7 -
19 files changed, 334 insertions(+), 232 deletions(-)
Title: Generation, reconstruction, simulation and analysis of
synchronous, asynchronous, and probabilistic Boolean networks
Diff between BoolNet versions 1.45 dated 2011-11-22 and 1.46 dated 2012-01-17
Description: Provides methods to reconstruct and generate synchronous,
asynchronous, and probabilistic Boolean networks, and to
analyze and visualize attractors in Boolean networks
Author: Christoph Müssel, Martin Hopfensitz, Dao Zhou, Hans Kestler
Maintainer: Hans Kestler
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
inst/doc/BoolNet_package_vignette.pdf |binary
man/BoolNet-package.Rd | 4 ++--
src/boolean_network.c | 3 +--
5 files changed, 11 insertions(+), 12 deletions(-)
Title: R interface to the MySQL database
Diff between RMySQL versions 0.9-0 dated 2012-01-14 and 0.9-3 dated 2012-01-17
Description: Database interface and MySQL driver for R. This version
complies with the database interface definition as implemented
in the package DBI 0.2-2.
Author: David A. James and Saikat DebRoy
Maintainer: Jeffrey Horner
DESCRIPTION | 8 +--
MD5 | 10 ++--
R/zzz.R | 4 -
inst/doc/DBI.pdf |binary
tests/tests.R | 120 ++++++++++++++++++++++----------------------------
tests/tests.Rout.save | 30 ++----------
6 files changed, 71 insertions(+), 101 deletions(-)
Title: Independent Factor Analysis
Diff between ifa versions 6.0 dated 2011-02-24 and 7.0 dated 2012-01-17
Description: The package performes Independent Factor Analysis
Author: Cinzia Viroli
Maintainer: Cinzia Viroli
ifa-6.0/ifa/README |only
ifa-7.0/ifa/DESCRIPTION | 8 ++++----
ifa-7.0/ifa/MD5 |only
ifa-7.0/ifa/R/firstlib.R |only
ifa-7.0/ifa/R/ifa.aic.R | 4 ++--
ifa-7.0/ifa/R/ifa.em.R | 2 +-
ifa-7.0/ifa/R/ifa.init.random.R | 4 ++--
ifa-7.0/ifa/man/ifa.aic.Rd | 2 +-
ifa-7.0/ifa/man/ifa.bic.Rd | 2 +-
ifa-7.0/ifa/man/ifa.em.Rd | 2 +-
ifa-7.0/ifa/src/ifaem.f90 | 9 +++++++--
11 files changed, 19 insertions(+), 14 deletions(-)
More information about diseasemapping at CRAN
Permanent link
Title: WELL19937a random number generator implemented with 53 bit
output
Diff between rngwell19937 versions 0.5-3 dated 2009-08-16 and 0.5-4 dated 2012-01-17
Description: A stand-alone package for the random number generator
WELL19937a by F. Panneton, P. L'Ecuyer and M. Matsumoto. The
initialization algorithm allows to seed the generator with a
vector of integers of an arbitrary length and uses MRG32k5a by
P. L'Ecuyer to achieve good quality of the initialization. The
output function may be set to provide numbers from the interval
(0,1) with 53 (the default) or 32 random bits. WELL19937a is of
similar type as Mersenne Twister and has the same period.
WELL19937a is slightly slower than Mersenne Twister, but has
better equidistribution and "bit-mixing" properties and faster
recovery from states with prevailing zeros than Mersenne
Twister. All WELL generators with orders 512, 1024, 19937 and
44497 can be found in randtoolbox package.
Author: Petr Savicky
Maintainer: Petr Savicky
rngwell19937-0.5-3/rngwell19937/CHANGELOG |only
rngwell19937-0.5-4/rngwell19937/ChangeLog |only
rngwell19937-0.5-4/rngwell19937/DESCRIPTION | 8 ++---
rngwell19937-0.5-4/rngwell19937/MD5 |only
rngwell19937-0.5-4/rngwell19937/NAMESPACE |only
rngwell19937-0.5-4/rngwell19937/R/init.R | 7 +++--
rngwell19937-0.5-4/rngwell19937/R/validate.R | 1
rngwell19937-0.5-4/rngwell19937/man/set.initialization.Rd | 10 ++++---
rngwell19937-0.5-4/rngwell19937/man/set.resolution.Rd | 13 +++++----
rngwell19937-0.5-4/rngwell19937/man/set.vector.seed.Rd | 19 ++++++++------
rngwell19937-0.5-4/rngwell19937/man/well19937.validate.Rd | 5 ++-
11 files changed, 37 insertions(+), 26 deletions(-)
Title: Regression Modeling Strategies
Diff between rms versions 3.3-3 dated 2011-12-12 and 3.4-0 dated 2012-01-17
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model
design attributes in the fit. rms is a collection of 229
functions that assist with and streamline modeling. It also
contains functions for binary and ordinal logistic regression
models and the Buckley-James multiple regression model for
right-censored responses, and implements penalized maximum
likelihood estimation for logistic and ordinary linear models.
rms works with almost any regression model, but it was
especially written to work with binary or ordinal logistic
regression, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized
least squares for serially or spatially correlated
observations, generalized linear models, and quantile
regression.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
DESCRIPTION | 36 +++++++++++++++++++-----------------
MD5 | 32 +++++++++++++++++---------------
NEWS | 9 +++++++++
R/Glm.s | 3 ++-
R/Gls.s | 3 ++-
R/Predict.s | 3 ++-
R/bj.s | 3 ++-
R/contrast.s | 17 +++++++++++++++--
R/cph.s | 2 +-
R/ols.s | 3 ++-
R/predictrms.s | 22 ++++++++++++++++++----
R/psm.s | 8 ++++++--
man/Predict.Rd | 14 ++++++++++++--
man/contrast.Rd | 13 ++++++++++++-
man/plot.Predict.Rd | 21 ++++++++++++++++++++-
man/predictrms.Rd | 13 +++++++------
tests/Predict.s |only
tests/simult.s |only
18 files changed, 146 insertions(+), 56 deletions(-)
Title: Graphical user interface for data mining in R
Diff between rattle versions 2.6.15 dated 2011-12-04 and 2.6.16 dated 2012-01-17
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab.
Thus they are available to the user as a script file or as an
aide for the user to learn R or to copy-and-paste directly into
R itself. Rattle also exports a number of utility functions
and the graphical user interface, invoked as rattle(), does not
need to be run to deploy these.
Author: Graham Williams
Maintainer: Graham Williams
rattle-2.6.15/rattle/inst/doc/Makefile |only
rattle-2.6.15/rattle/man/overwritePackageFunction.Rd |only
rattle-2.6.16/rattle/DESCRIPTION | 34 +++++-----
rattle-2.6.16/rattle/MD5 | 37 +++++------
rattle-2.6.16/rattle/NAMESPACE | 4 -
rattle-2.6.16/rattle/R/associate.R | 27 +++++++-
rattle-2.6.16/rattle/R/rattle.R | 53 +++++++++-------
rattle-2.6.16/rattle/data/audit.RData |binary
rattle-2.6.16/rattle/data/locationsAUS.RData |binary
rattle-2.6.16/rattle/data/weather.RData |binary
rattle-2.6.16/rattle/data/weatherAUS.RData |binary
rattle-2.6.16/rattle/data/wine.RData |binary
rattle-2.6.16/rattle/inst/CITATION | 24 ++++---
rattle-2.6.16/rattle/inst/ChangeLog | 13 +++
rattle-2.6.16/rattle/inst/doc/rattle.Rnw | 5 +
rattle-2.6.16/rattle/inst/doc/rattle.pdf |binary
rattle-2.6.16/rattle/inst/po/de/LC_MESSAGES/R-rattle.mo |binary
rattle-2.6.16/rattle/inst/po/es/LC_MESSAGES/R-rattle.mo |binary
rattle-2.6.16/rattle/inst/po/fr/LC_MESSAGES/R-rattle.mo |binary
rattle-2.6.16/rattle/inst/po/ja/LC_MESSAGES/R-rattle.mo |binary
rattle-2.6.16/rattle/vignettes |only
21 files changed, 126 insertions(+), 71 deletions(-)
Title: Pretty descriptive stats.
Diff between prettyR versions 2.0-1 dated 2011-09-06 and 2.0-3 dated 2012-01-17
Description: Functions for conventionally formatted descriptive stats,
and to format R output as HTML.
Author: Jim Lemon
Maintainer: Jim Lemon
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
NEWS | 9 +++++++++
R/brkdn.R | 7 ++++---
R/describe.R | 13 +++++++------
R/freq.R | 4 ++--
R/truncString.R | 2 +-
man/freq.Rd | 3 ++-
man/xtab.Rd | 2 +-
9 files changed, 38 insertions(+), 26 deletions(-)
Title: CORElearn - classification, regression, feature evaluation and
ordinal evaluation
Diff between CORElearn versions 0.9.36 dated 2012-01-03 and 0.9.37 dated 2012-01-17
Description: CORElearn is machine learning suite ported to R from
standalone C++ package. It contains several model learning
techniques in classification and regression, for example
classification and regression trees with optional constructive
induction and models in the leafs, random forests, kNN, naive
Bayes, and locally weighted regression. It is especially
strong in feature evaluation algorithms where it contains
several variants of Relief algorithm and many impurity based
attribute evaluation functions, e.g., Gini, information gain,
MDL, DKM, ... Its additional strength is ordEval algorithm and
its visualization used for ordinal features and class. Several
algorithms support parallel multithreaded execution via OpenMP.
Windows binary versions supporting multithreading are available
on package website, as CRAN uses different toolchain. The top
level documentation is reachable through ?CORElearn.
Author: Marko Robnik-Sikonja
Maintainer: Marko Robnik-Sikonja
ChangeLog | 1
DESCRIPTION | 37 +++---
MD5 | 134 +++++++++++------------
R/testCore.R | 35 ++++--
man/CORElearn-internal.Rd | 108 +++++++++---------
man/classDataGen.Rd | 264 +++++++++++++++++++++++-----------------------
man/classPrototypes.Rd | 88 +++++++--------
man/getCoreModel.Rd | 100 ++++++++---------
man/ordDataGen.Rd | 116 ++++++++++----------
man/plot.CoreModel.Rd | 222 +++++++++++++++++++-------------------
man/plot.ordEval.Rd | 218 ++++++++++++++++++-------------------
man/preparePlot.Rd | 122 ++++++++++-----------
man/regDataGen.Rd | 134 +++++++++++------------
man/rfAttrEval.Rd | 120 ++++++++++----------
man/rfClustering.Rd | 90 +++++++--------
man/rfOutliers.Rd | 86 +++++++-------
man/rfProximity.Rd | 86 +++++++-------
man/testCore.Rd | 4
src/Rconvert.cpp | 1
src/binarize.cpp | 1
src/binarizeReg.cpp | 1
src/binnode.cpp | 3
src/binnodeReg.cpp | 3
src/binpart.cpp | 2
src/bintree.cpp | 3
src/bintreeReg.cpp | 3
src/c45read.cpp | 2
src/calibrate.cpp | 1
src/constrct.cpp | 5
src/constrctReg.cpp | 1
src/cost.cpp | 10 -
src/dataStore.cpp | 5
src/dataStore.h | 1
src/error.cpp | 1
src/estCommon.cpp | 9 -
src/estOrdAttr.cpp | 4
src/estimator.cpp | 3
src/estimatorReg.cpp | 3
src/expr.cpp | 5
src/exprReg.cpp | 1
src/frontend.cpp | 78 ++++---------
src/frontend.h | 18 ++-
src/ftree.cpp | 1
src/kdtree.cpp | 1
src/mathutil.cpp | 3
src/menu.cpp | 8 -
src/model.cpp | 1
src/modelReg.cpp | 1
src/mstring.cpp | 1
src/new_new.cpp | 2
src/nrutil.cpp | 2
src/options.cpp | 2
src/printUtil.cpp | 2
src/prune.cpp | 2
src/pruneReg.cpp | 3
src/random.cpp | 2
src/regtree.cpp | 1
src/relieff.cpp | 27 ++--
src/rfRegularize.cpp | 2
src/rfVisual.cpp | 6 -
src/rfVisualFront.cpp | 10 -
src/rndforest.cpp | 1
src/rrelieff.cpp | 11 +
src/treenode.cpp | 1
src/treenodeReg.cpp | 1
src/trutil.cpp | 1
src/trutilReg.cpp | 1
src/utils.cpp | 2
68 files changed, 1141 insertions(+), 1083 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-12 0.2
2011-04-05 0.1
Title: WNOMINATE Roll Call Analysis Software.
Diff between wnominate versions 0.96 dated 2011-07-23 and 0.98 dated 2012-01-17
Description: Estimates Poole and Rosenthal W-NOMINATE scores from roll
call votes supplied though a 'rollcall' object from package
'pscl'.
Author: Keith Poole
Maintainer: Jeffrey Lewis
wnominate-0.96/wnominate/inst/doc/Sweave.sty |only
wnominate-0.96/wnominate/inst/doc/wnominate-UN4.eps |only
wnominate-0.96/wnominate/inst/doc/wnominate-five.eps |only
wnominate-0.96/wnominate/inst/doc/wnominate-four.eps |only
wnominate-0.96/wnominate/inst/doc/wnominate-random3.eps |only
wnominate-0.96/wnominate/inst/notused.Rnw |only
wnominate-0.98/wnominate/DESCRIPTION | 8 ++++----
wnominate-0.98/wnominate/HISTORY | 11 ++++++++++-
wnominate-0.98/wnominate/MD5 |only
wnominate-0.98/wnominate/R/header.R | 12 ++++++------
wnominate-0.98/wnominate/data/UN.csv.gz |binary
wnominate-0.98/wnominate/inst/doc/wnominate.pdf |binary
wnominate-0.98/wnominate/man/plot.angles.Rd | 5 ++---
wnominate-0.98/wnominate/man/plot.coords.Rd | 4 ++--
wnominate-0.98/wnominate/man/plot.cutlines.Rd | 4 ++--
wnominate-0.98/wnominate/man/plot.nomObject.Rd | 2 +-
wnominate-0.98/wnominate/man/plot.scree.Rd | 4 ++--
wnominate-0.98/wnominate/man/summary.nomObject.Rd | 2 +-
wnominate-0.98/wnominate/src/wnominate.f90 | 8 ++++----
19 files changed, 34 insertions(+), 26 deletions(-)
Title: Estimating the proportion of true null hypotheses for FDR
Diff between pi0 versions 1.3-190 dated 2011-10-17 and 1.3-200 dated 2012-01-17
Description: This package implements method(s) to (approximately
unbiasedly) estimate the proportion of true null hypotheses,
i.e., the pi0, when a very large number of hypotheses are
simultaneously tested, especially for the purpose of (local)
false discovery rate control for microarray data. It also
contains functions to estimate the distribution of
noncentrality parameters from a large number of parametric
tests.
Author: Long Qu
Maintainer: Long Qu
pi0-1.3-190/pi0/R/zzz.R |only
pi0-1.3-200/pi0/DESCRIPTION | 12 +-
pi0-1.3-200/pi0/MD5 | 147 ++++++++++++++---------------
pi0-1.3-200/pi0/NAMESPACE | 36 +++----
pi0-1.3-200/pi0/R/cond.cdf.R | 6 -
pi0-1.3-200/pi0/R/dFsnc.mix.R | 4
pi0-1.3-200/pi0/R/discTMix.R | 2
pi0-1.3-200/pi0/R/dtn.mix.R | 4
pi0-1.3-200/pi0/R/extrp.pi0.known.gam2.R | 4
pi0-1.3-200/pi0/R/extrp.pi0.unknown.gam2.R | 4
pi0-1.3-200/pi0/R/laplace.nct.R | 4
pi0-1.3-200/pi0/R/lfdr.R | 23 ++--
pi0-1.3-200/pi0/R/momeff.nonzeromean.R | 2
pi0-1.3-200/pi0/R/ncpest.helpers.R | 3
pi0-1.3-200/pi0/R/nparncp.R | 12 +-
pi0-1.3-200/pi0/R/nparncpF.R | 12 +-
pi0-1.3-200/pi0/R/parncp.R | 6 -
pi0-1.3-200/pi0/R/parncpF.R | 6 -
pi0-1.3-200/pi0/R/sparncp.R | 17 +--
pi0-1.3-200/pi0/R/sparncpF.R | 17 +--
pi0-1.3-200/pi0/ToDoList.txt | 7 +
pi0-1.3-200/pi0/man/CBUM.Rd | 2
pi0-1.3-200/pi0/man/agjack.Rd | 2
pi0-1.3-200/pi0/man/clean.cdf.Rd | 2
pi0-1.3-200/pi0/man/coef.ncpest.Rd | 6 -
pi0-1.3-200/pi0/man/combn2R.Rd | 2
pi0-1.3-200/pi0/man/cond.cdf.Rd | 2
pi0-1.3-200/pi0/man/dncp.Rd | 8 -
pi0-1.3-200/pi0/man/dt.int2.Rd | 2
pi0-1.3-200/pi0/man/dt.lap.Rd | 2
pi0-1.3-200/pi0/man/dtn.mix.Rd | 10 -
pi0-1.3-200/pi0/man/extrp.pi0.master.Rd | 2
pi0-1.3-200/pi0/man/fdr.Rd | 2
pi0-1.3-200/pi0/man/fitted.discTMix.Rd | 6 -
pi0-1.3-200/pi0/man/fitted.nparncp.Rd | 20 +--
pi0-1.3-200/pi0/man/geomean.Rd | 2
pi0-1.3-200/pi0/man/gjack.Rd | 2
pi0-1.3-200/pi0/man/grid.search.Rd | 2
pi0-1.3-200/pi0/man/histf1.Rd | 2
pi0-1.3-200/pi0/man/lastbin.Rd | 2
pi0-1.3-200/pi0/man/lfdr.Rd | 38 +++----
pi0-1.3-200/pi0/man/loadOrInstall.Rd | 2
pi0-1.3-200/pi0/man/logLik.ncpest.Rd | 2
pi0-1.3-200/pi0/man/mTruncNorm.Rd | 2
pi0-1.3-200/pi0/man/matrix.t.test.Rd | 2
pi0-1.3-200/pi0/man/mdt.Rd | 6 -
pi0-1.3-200/pi0/man/ncpest.Rd | 6 -
pi0-1.3-200/pi0/man/ncpest.iter.Rd | 2
pi0-1.3-200/pi0/man/nparncp.Rd | 38 ++-----
pi0-1.3-200/pi0/man/parncp.Rd | 4
pi0-1.3-200/pi0/man/pavaf1.Rd | 2
pi0-1.3-200/pi0/man/pdf.dist.Rd | 2
pi0-1.3-200/pi0/man/pi0-internal.Rd | 6 -
pi0-1.3-200/pi0/man/pi0-package.Rd | 15 +-
pi0-1.3-200/pi0/man/plot.extrpi0.Rd | 2
pi0-1.3-200/pi0/man/plot.nparncp.Rd | 8 -
pi0-1.3-200/pi0/man/plot.parncp.Rd | 6 -
pi0-1.3-200/pi0/man/plot.sparncp.Rd | 8 -
pi0-1.3-200/pi0/man/plot.subex.Rd | 2
pi0-1.3-200/pi0/man/plot.subt.Rd | 2
pi0-1.3-200/pi0/man/print.extrpi0.Rd | 2
pi0-1.3-200/pi0/man/print.subex.Rd | 2
pi0-1.3-200/pi0/man/print.subt.Rd | 2
pi0-1.3-200/pi0/man/pt.sad.Rd | 2
pi0-1.3-200/pi0/man/reflection.Rd | 2
pi0-1.3-200/pi0/man/sim.dat.Rd | 2
pi0-1.3-200/pi0/man/sparncp.Rd | 6 -
pi0-1.3-200/pi0/man/subex.Rd | 2
pi0-1.3-200/pi0/man/subt.Rd | 2
pi0-1.3-200/pi0/man/summary.nparncp.Rd | 6 -
pi0-1.3-200/pi0/man/summary.parncp.Rd | 6 -
pi0-1.3-200/pi0/man/summary.sparncp.Rd | 6 -
pi0-1.3-200/pi0/man/varB.Rd | 2
pi0-1.3-200/pi0/man/vcov.ncpest.Rd | 2
pi0-1.3-200/pi0/man/znormix.Rd | 2
75 files changed, 307 insertions(+), 300 deletions(-)
Title: A Package to Recover a Basic Space from Issue Scales
Diff between basicspace versions 0.03 dated 2011-07-23 and 0.05 dated 2012-01-17
Description: Conducts Aldrich-McKelvey and Blackbox Scaling (SVD
generalization with missing values)
Author: Keith Poole
Maintainer: Keith Poole
basicspace-0.03/basicspace/.Rapp.history |only
basicspace-0.03/basicspace/inst/basicspace.Rnw |only
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basicspace-0.05/basicspace/.Rinstignore |only
basicspace-0.05/basicspace/DESCRIPTION | 10
basicspace-0.05/basicspace/HISTORY | 7
basicspace-0.05/basicspace/MD5 |only
basicspace-0.05/basicspace/R/header.R | 13
basicspace-0.05/basicspace/data/.Rapp.history | 939 ++++++
basicspace-0.05/basicspace/data/LC1980_bbt.rda |only
basicspace-0.05/basicspace/inst/doc/basicspace.Rnw | 1352 +++++-----
basicspace-0.05/basicspace/inst/doc/basicspace.pdf |binary
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basicspace-0.05/basicspace/man/blackbox_transpose.Rd | 17
basicspace-0.05/basicspace/man/plot.AM.Rd | 2
basicspace-0.05/basicspace/man/plot.aldmck.Rd | 2
basicspace-0.05/basicspace/man/plot.aldmck_negative.Rd | 2
basicspace-0.05/basicspace/man/plot.aldmck_positive.Rd | 2
basicspace-0.05/basicspace/man/plot.blackbt.Rd | 18
basicspace-0.05/basicspace/man/plot.cdf.Rd | 2
basicspace-0.05/basicspace/man/plotcdf.blackbt.Rd | 18
basicspace-0.05/basicspace/man/summary.aldmck.Rd | 2
basicspace-0.05/basicspace/man/summary.blackbox.Rd | 2
basicspace-0.05/basicspace/man/summary.blackbt.Rd | 18
basicspace-0.05/basicspace/src/basicspace.f90 | 20
53 files changed, 1603 insertions(+), 823 deletions(-)