Title: Overlays on Google map tiles in R
Diff between RgoogleMaps versions 1.1.9.15 dated 2011-08-02 and 1.2.0 dated 2012-03-15
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling.
Author: "Markus Loecher, Berlin School of Economics and Law (BSEL)"
Maintainer: "Markus Loecher"
RgoogleMaps-1.1.9.15/RgoogleMaps/R/SPGDF2matrix.R |only
RgoogleMaps-1.1.9.15/RgoogleMaps/R/myplot.imagematrix.R |only
RgoogleMaps-1.1.9.15/RgoogleMaps/inst/doc/InverseMapping.aux |only
RgoogleMaps-1.1.9.15/RgoogleMaps/inst/doc/InverseMapping.log |only
RgoogleMaps-1.1.9.15/RgoogleMaps/inst/doc/InverseMapping.pdf |only
RgoogleMaps-1.1.9.15/RgoogleMaps/inst/doc/InverseMapping.synctex.gz |only
RgoogleMaps-1.1.9.15/RgoogleMaps/inst/doc/RgoogleMaps-intro.aux |only
RgoogleMaps-1.1.9.15/RgoogleMaps/inst/doc/RgoogleMaps-intro.log |only
RgoogleMaps-1.1.9.15/RgoogleMaps/inst/doc/RgoogleMaps-intro.tex |only
RgoogleMaps-1.1.9.15/RgoogleMaps/man/SPGDF2matrix.Rd |only
RgoogleMaps-1.1.9.15/RgoogleMaps/man/myplot.imagematrix.Rd |only
RgoogleMaps-1.2.0/RgoogleMaps/DESCRIPTION | 23 -
RgoogleMaps-1.2.0/RgoogleMaps/MD5 |only
RgoogleMaps-1.2.0/RgoogleMaps/NAMESPACE |only
RgoogleMaps-1.2.0/RgoogleMaps/NEWS |only
RgoogleMaps-1.2.0/RgoogleMaps/R/GetMap.OSM.R | 82 ++-
RgoogleMaps-1.2.0/RgoogleMaps/R/GetMap.R | 219 ++++++----
RgoogleMaps-1.2.0/RgoogleMaps/R/GetMap.bbox.R | 109 +++-
RgoogleMaps-1.2.0/RgoogleMaps/R/LatLon2XY.R | 63 +-
RgoogleMaps-1.2.0/RgoogleMaps/R/LatLon2XY.centered.R | 39 +
RgoogleMaps-1.2.0/RgoogleMaps/R/MapBackground.R | 119 +++--
RgoogleMaps-1.2.0/RgoogleMaps/R/MaxZoom.R | 30 -
RgoogleMaps-1.2.0/RgoogleMaps/R/PlotArrowsOnStaticMap.R | 50 +-
RgoogleMaps-1.2.0/RgoogleMaps/R/PlotOnStaticMap.R | 189 +++++---
RgoogleMaps-1.2.0/RgoogleMaps/R/PlotPolysOnStaticMap.R | 146 ++++--
RgoogleMaps-1.2.0/RgoogleMaps/R/RGB2GRAY.R | 61 +-
RgoogleMaps-1.2.0/RgoogleMaps/R/ReadMapTile.R | 72 +--
RgoogleMaps-1.2.0/RgoogleMaps/R/TextOnStaticMap.R | 48 +-
RgoogleMaps-1.2.0/RgoogleMaps/R/Tile2R.R | 34 +
RgoogleMaps-1.2.0/RgoogleMaps/R/XY2LatLon.R | 96 ++--
RgoogleMaps-1.2.0/RgoogleMaps/R/degAxis.R |only
RgoogleMaps-1.2.0/RgoogleMaps/R/mypolygon.R | 15
RgoogleMaps-1.2.0/RgoogleMaps/R/qbbox.R | 93 ++--
RgoogleMaps-1.2.0/RgoogleMaps/R/updateusr.R | 86 +++
RgoogleMaps-1.2.0/RgoogleMaps/inst/doc/RgoogleMaps-intro.Rnw | 2
RgoogleMaps-1.2.0/RgoogleMaps/inst/doc/RgoogleMaps-intro.pdf |binary
RgoogleMaps-1.2.0/RgoogleMaps/man/GetMap.OSM.Rd | 90 ++--
RgoogleMaps-1.2.0/RgoogleMaps/man/GetMap.Rd | 161 +++----
RgoogleMaps-1.2.0/RgoogleMaps/man/GetMap.bbox.Rd | 123 ++---
RgoogleMaps-1.2.0/RgoogleMaps/man/LatLon2XY.Rd | 64 +-
RgoogleMaps-1.2.0/RgoogleMaps/man/LatLon2XY.centered.Rd | 62 +-
RgoogleMaps-1.2.0/RgoogleMaps/man/MapBackground.Rd | 93 ++--
RgoogleMaps-1.2.0/RgoogleMaps/man/MaxZoom.Rd | 47 +-
RgoogleMaps-1.2.0/RgoogleMaps/man/PlotArrowsOnStaticMap.Rd | 121 +----
RgoogleMaps-1.2.0/RgoogleMaps/man/PlotOnStaticMap.Rd | 121 +++--
RgoogleMaps-1.2.0/RgoogleMaps/man/PlotPolysOnStaticMap.Rd | 157 +++----
RgoogleMaps-1.2.0/RgoogleMaps/man/RGB2GRAY.Rd | 49 --
RgoogleMaps-1.2.0/RgoogleMaps/man/ReadMapTile.Rd | 41 +
RgoogleMaps-1.2.0/RgoogleMaps/man/RgoogleMaps-package.Rd | 116 +----
RgoogleMaps-1.2.0/RgoogleMaps/man/TextOnStaticMap.Rd | 93 ++--
RgoogleMaps-1.2.0/RgoogleMaps/man/Tile2R.Rd | 74 +--
RgoogleMaps-1.2.0/RgoogleMaps/man/XY2LatLon.Rd | 100 ++--
RgoogleMaps-1.2.0/RgoogleMaps/man/degAxis.Rd |only
RgoogleMaps-1.2.0/RgoogleMaps/man/mypolygon.Rd | 51 --
RgoogleMaps-1.2.0/RgoogleMaps/man/qbbox.Rd | 115 ++---
RgoogleMaps-1.2.0/RgoogleMaps/man/updateusr.Rd | 135 ++----
56 files changed, 1844 insertions(+), 1545 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Diff between Matrix versions 1.0-4 dated 2012-02-22 and 1.0-5 dated 2012-03-15
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
Author: Douglas Bates
Maintainer: Doug and Martin
Matrix-1.0-4/Matrix/man/xtabs.Rd |only
Matrix-1.0-5/Matrix/ChangeLog | 32 ++
Matrix-1.0-5/Matrix/DESCRIPTION | 8
Matrix-1.0-5/Matrix/MD5 | 73 ++---
Matrix-1.0-5/Matrix/R/Auxiliaries.R | 8
Matrix-1.0-5/Matrix/R/Matrix.R | 6
Matrix-1.0-5/Matrix/R/Ops.R | 42 +--
Matrix-1.0-5/Matrix/R/spModels.R | 78 ++++--
Matrix-1.0-5/Matrix/R/sparseMatrix.R | 81 ------
Matrix-1.0-5/Matrix/TODO | 9
Matrix-1.0-5/Matrix/inst/doc/Comparisons.pdf |binary
Matrix-1.0-5/Matrix/inst/doc/Design-issues.pdf |binary
Matrix-1.0-5/Matrix/inst/doc/Intro2Matrix.pdf |binary
Matrix-1.0-5/Matrix/inst/doc/Introduction.pdf |binary
Matrix-1.0-5/Matrix/inst/doc/sparseModels.pdf |binary
Matrix-1.0-5/Matrix/inst/po/de/LC_MESSAGES/Matrix.mo |binary
Matrix-1.0-5/Matrix/inst/po/de/LC_MESSAGES/R-Matrix.mo |binary
Matrix-1.0-5/Matrix/inst/po/en@quot/LC_MESSAGES/Matrix.mo |binary
Matrix-1.0-5/Matrix/inst/po/en@quot/LC_MESSAGES/R-Matrix.mo |binary
Matrix-1.0-5/Matrix/man/diagonalMatrix-class.Rd | 1
Matrix-1.0-5/Matrix/man/sparse.model.matrix.Rd | 10
Matrix-1.0-5/Matrix/man/sparseMatrix-class.Rd | 7
Matrix-1.0-5/Matrix/man/sparseMatrix.Rd | 4
Matrix-1.0-5/Matrix/po/Matrix.pot | 119 ++++-----
Matrix-1.0-5/Matrix/po/R-Matrix.pot | 31 --
Matrix-1.0-5/Matrix/po/R-de.po | 52 ++--
Matrix-1.0-5/Matrix/po/R-en@quot.po | 41 +--
Matrix-1.0-5/Matrix/po/de.po | 152 ++++++------
Matrix-1.0-5/Matrix/po/en@quot.po | 132 +++++-----
Matrix-1.0-5/Matrix/src/Csparse.c | 4
Matrix-1.0-5/Matrix/src/chm_common.c | 22 +
Matrix-1.0-5/Matrix/src/dsCMatrix.c | 8
Matrix-1.0-5/Matrix/src/dtCMatrix.c | 24 +
Matrix-1.0-5/Matrix/tests/bind.Rout.save | 22 -
Matrix-1.0-5/Matrix/tests/factorizing.R | 23 +
Matrix-1.0-5/Matrix/tests/group-methods.R | 17 +
Matrix-1.0-5/Matrix/tests/indexing.Rout.save | 36 +-
Matrix-1.0-5/Matrix/tests/spModel.matrix.R | 10
38 files changed, 550 insertions(+), 502 deletions(-)
Title: R Interface to C API of GLPK
Diff between glpkAPI versions 1.2.0 dated 2012-02-15 and 1.2.1 dated 2012-03-15
Description: R Interface to C API of GLPK, needs GLPK Version >= 4.42
Author: Gabriel Gelius-Dietrich [cre]
Maintainer: Gabriel Gelius-Dietrich
glpkAPI-1.2.0/glpkAPI/R/AllGenerics.R |only
glpkAPI-1.2.0/glpkAPI/inst/doc/prob.lp |only
glpkAPI-1.2.0/glpkAPI/inst/doc/sol.txt |only
glpkAPI-1.2.1/glpkAPI/DESCRIPTION | 15
glpkAPI-1.2.1/glpkAPI/INSTALL | 10
glpkAPI-1.2.1/glpkAPI/MD5 | 308 -
glpkAPI-1.2.1/glpkAPI/NAMESPACE | 7
glpkAPI-1.2.1/glpkAPI/NEWS | 29
glpkAPI-1.2.1/glpkAPI/R/generics.R |only
glpkAPI-1.2.1/glpkAPI/R/glpk_ptrClass.R | 118
glpkAPI-1.2.1/glpkAPI/configure | 4218 +++++++++----------
glpkAPI-1.2.1/glpkAPI/configure.ac | 23
glpkAPI-1.2.1/glpkAPI/inst/doc/glpkAPI.Rnw | 20
glpkAPI-1.2.1/glpkAPI/inst/doc/glpkAPI.pdf |binary
glpkAPI-1.2.1/glpkAPI/man/addColsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/addRowsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/advBasisGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/bfExistsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/bfUpdatedGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/copyProbGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/cpxBasisGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/createIndexGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/delColsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/delProbGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/delRowsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/deleteIndexGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/eraseProbGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/factorizeGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/findColGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/findRowGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getBfcpGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getBheadGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getCbindGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColDualGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColDualIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColKindGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColLowBndGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColNameGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColPrimGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColPrimIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColStatGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColTypeGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColUppBndGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColsDualGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColsDualIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColsKindGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColsLowBndsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColsPrimGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColsPrimIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColsStatGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getColsUppBndsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getDualStatGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getMatColGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getMatRowGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getNumBinGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getNumColsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getNumIntGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getNumNnzGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getNumRowsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getObjCoefGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getObjCoefsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getObjDirGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getObjNameGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getObjValGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getObjValIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getPrimStatGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getProbNameGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRbindGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRiiGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowDualGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowDualIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowLowBndGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowNameGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowPrimGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowPrimIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowStatGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowTypeGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowUppBndGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowsDualGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowsDualIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowsLowBndsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowsPrimGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowsPrimIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowsStatGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getRowsUppBndsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getSjjGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getSolStatGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getSolStatIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/getUnbndRayGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/glpkPtr-class.Rd | 46
glpkAPI-1.2.1/glpkAPI/man/loadMatrixGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mipColValGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mipColsValGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mipObjValGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mipRowValGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mipRowsValGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mipStatusGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mplBuildProbGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mplFreeWkspGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mplGenerateGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mplPostsolveGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mplReadDataGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/mplReadModelGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/printIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/printMIPGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/printRangesGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/printSolGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/readIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/readLPGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/readMIPGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/readMPSGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/readProbGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/readSolGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/scaleProbGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setBfcpGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setColBndGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setColKindGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setColNameGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setColStatGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setColsBndsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setColsBndsObjCoefsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setColsKindGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setMatColGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setMatRowGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setObjCoefGLPK.Rd | 8
glpkAPI-1.2.1/glpkAPI/man/setObjCoefsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setObjDirGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setObjNameGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setProbNameGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setRhsZeroGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setRiiGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setRowBndGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setRowNameGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setRowStatGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setRowsBndsGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/setSjjGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/solveInteriorGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/solveMIPGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/solveSimplexExactGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/solveSimplexGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/sortMatrixGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/stdBasisGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/termOutGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/unscaleProbGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/warmUpGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/writeIptGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/writeLPGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/writeMIPGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/writeMPSGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/writeProbGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/man/writeSolGLPK.Rd | 4
glpkAPI-1.2.1/glpkAPI/src/Makevars |only
glpkAPI-1.2.1/glpkAPI/src/config.h |only
glpkAPI-1.2.1/glpkAPI/src/config.h.in |only
glpkAPI-1.2.1/glpkAPI/src/glpkAPI.c | 180
glpkAPI-1.2.1/glpkAPI/src/glpkAPI.h | 15
glpkAPI-1.2.1/glpkAPI/src/glpkR.h | 23
glpkAPI-1.2.1/glpkAPI/src/init.c | 5
glpkAPI-1.2.1/glpkAPI/vignettes |only
159 files changed, 3132 insertions(+), 2433 deletions(-)
Title: R Interface to C API of IBM ILOG CPLEX
Diff between cplexAPI versions 1.1.8 dated 2011-08-24 and 1.2.1 dated 2012-03-15
Description: R Interface to C API of IBM ILOG CPLEX, depends on IBM
ILOG CPLEX (>= 12.1)
Author: Gabriel Gelius-Dietrich [cre]
Maintainer: Gabriel Gelius-Dietrich
cplexAPI-1.1.8/cplexAPI/R/cpxerrClass.R |only
cplexAPI-1.1.8/cplexAPI/man/cpxerr-class.Rd |only
cplexAPI-1.2.1/cplexAPI/DESCRIPTION | 20
cplexAPI-1.2.1/cplexAPI/INSTALL | 14
cplexAPI-1.2.1/cplexAPI/MD5 | 410
cplexAPI-1.2.1/cplexAPI/NAMESPACE | 51
cplexAPI-1.2.1/cplexAPI/NEWS | 74
cplexAPI-1.2.1/cplexAPI/R/cplex.R | 4
cplexAPI-1.2.1/cplexAPI/R/cplexAPI.R | 1110 +-
cplexAPI-1.2.1/cplexAPI/R/cplexConst.R | 18
cplexAPI-1.2.1/cplexAPI/R/cplexErrorClass.R |only
cplexAPI-1.2.1/cplexAPI/R/cplexPtrClass.R |only
cplexAPI-1.2.1/cplexAPI/R/cplex_checkAPI.R | 49
cplexAPI-1.2.1/cplexAPI/R/cplex_longparamAPI.R | 14
cplexAPI-1.2.1/cplexAPI/R/generics.R |only
cplexAPI-1.2.1/cplexAPI/R/zzz.R | 4
cplexAPI-1.2.1/cplexAPI/configure | 4162 ++++------
cplexAPI-1.2.1/cplexAPI/configure.ac | 23
cplexAPI-1.2.1/cplexAPI/inst/c2r.map |only
cplexAPI-1.2.1/cplexAPI/inst/doc/cplexAPI.Rnw | 185
cplexAPI-1.2.1/cplexAPI/inst/doc/cplexAPI.pdf |binary
cplexAPI-1.2.1/cplexAPI/man/addChannelCPLEX.Rd | 15
cplexAPI-1.2.1/cplexAPI/man/addColsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/addFpDestCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/addMIPstartsCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/addRowsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/baroptCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/baseWriteCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/basicPresolveCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/boundSaCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/cLpWriteCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/checkAddColsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/checkAddRowsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/checkChgCoefListCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/checkCopyColTypeCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/checkCopyLpCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/checkCopyLpwNamesCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/checkCopyQuadCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/checkValsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgBndsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgCoefCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgCoefListCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgColNameCPLEX.Rd | 18
cplexAPI-1.2.1/cplexAPI/man/chgColTypeCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgColsBndsCPLEX.Rd | 16
cplexAPI-1.2.1/cplexAPI/man/chgMIPstartsCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/chgNameCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgObjCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgProbNameCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/chgProbTypeCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgQPcoefCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/chgRhsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgRngValCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgRowNameCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgSenseCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/chgTerminateCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/cleanupCoefCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/cloneProbCPLEX.Rd | 20
cplexAPI-1.2.1/cplexAPI/man/closeEnvCPLEX.Rd | 9
cplexAPI-1.2.1/cplexAPI/man/closeFileCPLEX.Rd | 2
cplexAPI-1.2.1/cplexAPI/man/closeProbCPLEX.Rd | 16
cplexAPI-1.2.1/cplexAPI/man/completelpCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/copyBaseCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/copyColTypeCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/copyLpCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/copyLpwNamesCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/copyObjNameCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/copyPartBaseCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/copyQuadCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/copyStartCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/cplexConstants.Rd | 16
cplexAPI-1.2.1/cplexAPI/man/cplexError-class.Rd |only
cplexAPI-1.2.1/cplexAPI/man/cplexPtr-class.Rd |only
cplexAPI-1.2.1/cplexAPI/man/delChannelCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/delColsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/delFpDestCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/delMIPstartsCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/delNamesCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/delProbCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/delRowsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/delSetColsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/delSetRowsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/delTerminateCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/disconnectChannelCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/dualWriteCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/dualoptCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/feasOptCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/flushChannelCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/flushStdChannelsCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/freePresolveCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getBaseCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getChannelsCPLEX.Rd | 13
cplexAPI-1.2.1/cplexAPI/man/getChgParmCPLEX.Rd | 7
cplexAPI-1.2.1/cplexAPI/man/getCoefCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getColIndexCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getColInfeasCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getColNameCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getColTypeCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getColsCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getConflictCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getConflictExtCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/getCutoffCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getDblParmCPLEX.Rd | 7
cplexAPI-1.2.1/cplexAPI/man/getDblQualCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getDbsCntCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getDjCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getErrorStrCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/getGradCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getInfoDblParmCPLEX.Rd | 7
cplexAPI-1.2.1/cplexAPI/man/getInfoIntParmCPLEX.Rd | 7
cplexAPI-1.2.1/cplexAPI/man/getInfoLongParmCPLEX.Rd | 7
cplexAPI-1.2.1/cplexAPI/man/getInfoStrParmCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/getIntParmCPLEX.Rd | 7
cplexAPI-1.2.1/cplexAPI/man/getIntQualCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getItCntCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getLogFileCPLEX.Rd | 14
cplexAPI-1.2.1/cplexAPI/man/getLongParmCPLEX.Rd | 7
cplexAPI-1.2.1/cplexAPI/man/getLowBndsIdsCPLEX.Rd | 18
cplexAPI-1.2.1/cplexAPI/man/getLowerBndsCPLEX.Rd | 13
cplexAPI-1.2.1/cplexAPI/man/getMIPstartIndexCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/getMIPstartNameCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/getMIPstartsCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/getMethodCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getNumColsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getNumMIPstartsCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/getNumNnzCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getNumQPnzCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/getNumQuadCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/getNumRowsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getObjCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getObjDirCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getObjNameCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getObjOffsetCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getObjValCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getParmNameCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/getParmNumCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/getParmTypeCPLEX.Rd | 7
cplexAPI-1.2.1/cplexAPI/man/getParmValCPLEX.Rd | 7
cplexAPI-1.2.1/cplexAPI/man/getPhase1CntCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getPiCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getPreStatCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getProbNameCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getProbTypeCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getProbVarCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getQPcoefCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/getQuadCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/getRedLpCPLEX.Rd | 20
cplexAPI-1.2.1/cplexAPI/man/getRhsCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getRngValCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getRowIndexCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getRowInfeasCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getRowNameCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getRowsCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getSenseCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getSiftItCntCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getSiftPase1CntCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getSlackCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/getStatCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getStatStrCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/getStrParmCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/getSubMethodCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getSubStatCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/getTimeCPLEX.Rd | 7
cplexAPI-1.2.1/cplexAPI/man/getUppBndsIdsCPLEX.Rd | 17
cplexAPI-1.2.1/cplexAPI/man/getUpperBndsCPLEX.Rd | 13
cplexAPI-1.2.1/cplexAPI/man/getVersionCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/hybbaroptCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/hybnetoptCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/initProbCPLEX.Rd | 15
cplexAPI-1.2.1/cplexAPI/man/lpoptCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/mipoptCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/newColsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/newRowsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/objSaCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/openEnvCPLEX.Rd | 13
cplexAPI-1.2.1/cplexAPI/man/openFileCPLEX.Rd | 8
cplexAPI-1.2.1/cplexAPI/man/openProbCPLEX.Rd | 13
cplexAPI-1.2.1/cplexAPI/man/preslvWriteCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/presolveCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/primoptCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/printTerminateCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/qpoptCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/readCopyBaseCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/readCopyMIPstartsCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/readCopyParmCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/readCopyProbCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/readCopySolCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/refineConflictCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/refineConflictExtCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/refineMIPstartConflictCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/refineMIPstartConflictExtCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/rhsSaCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/setDblParmCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/setDefaultParmCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/setIntParmCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/setLogFileCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/setLongParmCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/setObjDirCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/setStrParmCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/setTerminateCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/siftoptCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/solWriteCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/solnInfoCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/solutionCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/status_codeCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/tightenBndsCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/tuneParmCPLEX.Rd | 12
cplexAPI-1.2.1/cplexAPI/man/unscaleProbCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/man/writeMIPstartsCPLEX.Rd |only
cplexAPI-1.2.1/cplexAPI/man/writeParmCPLEX.Rd | 5
cplexAPI-1.2.1/cplexAPI/man/writeProbCPLEX.Rd | 10
cplexAPI-1.2.1/cplexAPI/src/Makevars.win | 4
cplexAPI-1.2.1/cplexAPI/src/cplexAPI.c | 1638 +++
cplexAPI-1.2.1/cplexAPI/src/cplexAPI.h | 126
cplexAPI-1.2.1/cplexAPI/src/cplexR.c | 10
cplexAPI-1.2.1/cplexAPI/src/cplexR.h | 22
cplexAPI-1.2.1/cplexAPI/src/cplex_checkAPI.c | 33
cplexAPI-1.2.1/cplexAPI/src/cplex_checkAPI.h | 8
cplexAPI-1.2.1/cplexAPI/src/cplex_longparamAPI.c | 4
cplexAPI-1.2.1/cplexAPI/src/cplex_longparamAPI.h | 4
cplexAPI-1.2.1/cplexAPI/src/init.c |only
221 files changed, 5894 insertions(+), 3769 deletions(-)
Title: Applies GAMbag, GAMrsm and GAMens ensemble classifiers for
binary classification
Diff between GAMens versions 1.1.1 dated 2010-02-25 and 1.1.2 dated 2012-03-15
Description: This package implements the GAMbag, GAMrsm and GAMens
ensemble classifiers for binary classification (De Bock et al.,
2010). The ensembles implement Bagging (Breiman, 1996), the
Random Subspace Method (Ho, 1998), or both, and use Hastie and
Tibshirani's (1990) generalized additive models (GAMs) as base
classifiers. Once an ensemble classifier has been trained, it
can be used for predictions on new data. A function for cross
validation is also included.
Author: Koen W. De Bock, Kristof Coussement and Dirk Van den Poel
Maintainer: Koen W. De Bock
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
R/GAMens.R | 8 +++++---
4 files changed, 9 insertions(+), 7 deletions(-)
Title: Tool for sending interactive plots with tool-tip content.
Diff between sendplot versions 3.8.8 dated 2012-01-13 and 3.8.9 dated 2012-03-15
Description: A tool for visualizing data
Author: Daniel P Gaile
Maintainer: Lori A. Shepherd
sendplot-3.8.8/sendplot/.Rinstignore |only
sendplot-3.8.9/sendplot/DESCRIPTION | 9 +++++----
sendplot-3.8.9/sendplot/MD5 | 12 ++++++------
sendplot-3.8.9/sendplot/R/heatmap.send.R | 3 ++-
sendplot-3.8.9/sendplot/R/sendplot.R | 6 +++---
sendplot-3.8.9/sendplot/inst/doc/sendplot.pdf |binary
sendplot-3.8.9/sendplot/man/heatmap.send.Rd | 3 +++
sendplot-3.8.9/sendplot/man/imagesend.Rd | 4 ++--
8 files changed, 21 insertions(+), 16 deletions(-)
Title: Functions to draw population pyramid
Diff between pyramid versions 1.2 dated 2010-03-11 and 1.3 dated 2012-03-15
Description: Drawing population pyramid using (1) data.frame or (2)
vectors. The former is named as pyramid() and the latter
pyramids(), as lapper function of pyramid().
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
DESCRIPTION | 12 ++++++------
MD5 |only
NAMESPACE |only
NEWS |only
R/pyramid.R | 27 +++++++++++++++++++++++++++
man/GunmaPop2005.Rd |only
man/pyramid.Rd | 30 +++---------------------------
man/pyramids.Rd | 4 ++--
8 files changed, 38 insertions(+), 35 deletions(-)
Title: Analysis of evolutionary rates in an OU framework
Diff between OUwie versions 1.16 dated 2012-03-14 and 1.17 dated 2012-03-15
Description: Calculates and compares rate differences of continuous
character evolution under Brownian motion and a new set of
Ornstein-Uhlenbeck-based Hansen models that allow the strength
of selection and drift to vary across selective regimes.
Author: Jeremy M. Beaulieu
Maintainer: Jeremy M. Beaulieu
DESCRIPTION | 10 +-
MD5 | 12 +-
R/OUwie.R | 89 ++++++++++++++----
R/OUwie.contour.R | 14 +-
R/OUwie.fixed.R | 240 +++++++++++++++++++++++++++++++++------------------
man/OUwie.contour.Rd | 5 -
man/OUwie.fixed.Rd | 5 -
7 files changed, 251 insertions(+), 124 deletions(-)
Title: Functions for medical statistics book with some demographic data
Diff between fmsb versions 0.3.2 dated 2012-02-06 and 0.3.3 dated 2012-03-15
Description: Several utility functions for the book entitled "Practices
of Medical and Health Data Analysis using R" (Pearson Education
Japan, 2007) with Japanese demographic data and some
demographic analysis related functions.
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
DESCRIPTION | 10 +++++-----
MD5 | 48 ++++++++++++++++++++++++------------------------
NEWS | 4 ++++
man/CT.Rd | 4 ++--
man/CronbachAlpha.Rd | 2 +-
man/Denny.Rd | 4 ++--
man/GompertzMakeham.Rd | 4 ++--
man/Hadwiger.Rd | 4 ++--
man/Kappatest.Rd | 2 +-
man/Nagelkerke.Rd | 2 +-
man/SIQR.Rd | 2 +-
man/Siler.Rd | 4 ++--
man/VIF.Rd | 2 +-
man/geary.Rd | 2 +-
man/gstem.Rd | 2 +-
man/lifetable.Rd | 2 +-
man/mhchart.Rd | 2 +-
man/oddsratio.Rd | 2 +-
man/pairwisefisher.Rd | 2 +-
man/percentile.Rd | 2 +-
man/pvalueplot.Rd | 2 +-
man/radarchart.Rd | 2 +-
man/riskratio.Rd | 2 +-
man/roc.Rd | 2 +-
man/truemedian.Rd | 2 +-
25 files changed, 60 insertions(+), 56 deletions(-)
Title: Tuned Data Mining in R
Diff between TDMR versions 0.2.0 dated 2012-02-09 and 0.2.1 dated 2012-03-15
Description: Tuned Data Mining in R (TDMR) performs a complete tuning
of a data mining task.
Author: Wolfgang Konen
Maintainer: Patrick Koch
TDMR-0.2.0/TDMR/inst/demo02sonar/sonar_04_cmaes_01.bst |only
TDMR-0.2.0/TDMR/inst/demo02sonar/sonar_04_cmaes_01.conf |only
TDMR-0.2.0/TDMR/inst/demo02sonar/sonar_04_cmaes_01.res |only
TDMR-0.2.0/TDMR/inst/demo02sonar/sonar_04_cmaes_01.roi |only
TDMR-0.2.0/TDMR/inst/doc/changes.htm |only
TDMR-0.2.1/TDMR/DESCRIPTION | 20
TDMR-0.2.1/TDMR/MD5 | 95 -
TDMR-0.2.1/TDMR/NAMESPACE | 2
TDMR-0.2.1/TDMR/R/makeTdmStartOther.r | 13
TDMR-0.2.1/TDMR/R/source.tdm.r | 8
TDMR-0.2.1/TDMR/R/tdmClassify.r | 15
TDMR-0.2.1/TDMR/R/tdmClassifyLoop.r | 11
TDMR-0.2.1/TDMR/R/tdmCompleteEval.r | 138 +
TDMR-0.2.1/TDMR/R/tdmDefaultsFill.r | 1
TDMR-0.2.1/TDMR/R/tdmDispatchTuner.r | 36
TDMR-0.2.1/TDMR/R/tdmGeneralUtils.r | 22
TDMR-0.2.1/TDMR/R/tdmMapDesign.r | 8
TDMR-0.2.1/TDMR/R/tdmModelingUtils.r | 83 -
TDMR-0.2.1/TDMR/R/tdmOptsDefaults.r | 6
TDMR-0.2.1/TDMR/R/tdmPlotResMeta.r |only
TDMR-0.2.1/TDMR/R/tdmPreprocUtils.r | 22
TDMR-0.2.1/TDMR/R/tdmRegressLoop.r | 2
TDMR-0.2.1/TDMR/R/tdmSplitTestData.r | 102 +
TDMR-0.2.1/TDMR/R/tdmStartSpot.r | 15
TDMR-0.2.1/TDMR/R/unbiasedRun.r | 7
TDMR-0.2.1/TDMR/demo/demo02sonar.r | 2
TDMR-0.2.1/TDMR/inst/demo02sonar/script_all.R | 6
TDMR-0.2.1/TDMR/inst/demo02sonar/sonar_04.RData |only
TDMR-0.2.1/TDMR/inst/demo02sonar/spot/sonar_04_spot_01.bst | 10
TDMR-0.2.1/TDMR/inst/demo02sonar/spot/sonar_04_spot_01.res | 78 -
TDMR-0.2.1/TDMR/inst/doc/TDM-docu.htm |only
TDMR-0.2.1/TDMR/inst/doc/TDM-docu.pdf |binary
TDMR-0.2.1/TDMR/inst/doc/changes-Dateien |only
TDMR-0.2.1/TDMR/inst/doc/changes.html | 963 ++++++++++---
TDMR-0.2.1/TDMR/inst/doc/index.html | 436 +++++
TDMR-0.2.1/TDMR/man/TDMR-dash-package.Rd | 2
TDMR-0.2.1/TDMR/man/bind-sub-response.Rd | 14
TDMR-0.2.1/TDMR/man/cat1.Rd | 4
TDMR-0.2.1/TDMR/man/cat2.Rd | 4
TDMR-0.2.1/TDMR/man/print-dot-TDMdata.Rd |only
TDMR-0.2.1/TDMR/man/print1.Rd | 4
TDMR-0.2.1/TDMR/man/print2.Rd | 4
TDMR-0.2.1/TDMR/man/tdmCompleteEval.Rd | 12
TDMR-0.2.1/TDMR/man/tdmDefaultsFill.Rd | 1
TDMR-0.2.1/TDMR/man/tdmModConfmat.Rd | 31
TDMR-0.2.1/TDMR/man/tdmModCreateCVindex.Rd | 13
TDMR-0.2.1/TDMR/man/tdmOptsDefaultsSet.Rd | 2
TDMR-0.2.1/TDMR/man/tdmPlotResMeta.Rd |only
TDMR-0.2.1/TDMR/man/tdmPreAddMonomials.Rd | 4
TDMR-0.2.1/TDMR/man/tdmPreGroupLevels.Rd | 14
TDMR-0.2.1/TDMR/man/tdmSplitTestData.Rd | 11
TDMR-0.2.1/TDMR/man/tdmStartSpot.Rd | 7
TDMR-0.2.1/TDMR/man/unbiasedRun.Rd | 5
53 files changed, 1705 insertions(+), 528 deletions(-)
Title: Package containing the required libraries (jars) for speedR
Diff between speedRlibs versions 1.1-33 dated 2012-02-27 and 1.1-35 dated 2012-03-15
Description: speedRlibs is a container for the required libraries
(jars) by speedR. These libraries are packaged separately,
because it is approximately 17 MB and will not be so often
updated like speedR. Thus it reduces the download time after
the first installation.
Author: Ilhami Visne
Maintainer: Ilhami Visne
DESCRIPTION | 6 +++---
MD5 | 6 +++---
inst/java/dockingframes-ext.jar |binary
inst/java/opencsv-2.2-patch.jar |binary
4 files changed, 6 insertions(+), 6 deletions(-)
Title: A GUI based importing and filtering tool
Diff between speedR versions 1.1-34 dated 2012-02-27 and 1.1-35 dated 2012-03-15
Description: speedR is a gui based utility to import and to filter
matrix alike data objects easily.
Author: Ilhami Visne
Maintainer: Ilhami Visne
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
inst/java/speedR.jar |binary
3 files changed, 6 insertions(+), 6 deletions(-)
Title: Quantile-quantile analysis of 24-hr precipitation using a frame
work based on the exponential distribution
Diff between qqplotter versions 1.11 dated 2011-10-15 and 1.16 dated 2012-03-15
Description: The package provides a quick analysis of quantiles of
wet-day 24-hr accumulated precipitation records, demonstrating
that the quantiles to a great degree can be predicted from the
wet-day mean. The package analyses both observations and
results from RCMs.
Author: Rasmus E. Benestad
Maintainer: Rasmus E. Benestad
DESCRIPTION | 14 ++--
MD5 | 23 ++++--
NAMESPACE |only
R/NorthAmerica.R | 167 +++++++++++++++++++++++++++++++++++---------------
R/qextrapolation.R |only
R/qqplotter.R | 128 +++++++++++++++++++++++++-------------
data |only
demo/00Index | 8 +-
man/NorthAmerica.Rd | 8 +-
man/data.Rd |only
man/extras.Rd | 11 ++-
man/processing.Rd | 10 ++
man/qextrapolation.Rd |only
man/qqplotter.Rd | 5 +
14 files changed, 255 insertions(+), 119 deletions(-)
Title: The R-to-MOSEK Optimization Interface
Diff between Rmosek versions 1.2.0 dated 2012-02-16 and 1.2.2 dated 2012-03-15
Description: Rmosek is an interface to the MOSEK Optimization Software
designed to solve large-scale mathematical optimization
problems. MOSEK provides specialized solvers for linear
programming, mixed integer programming and many types of
nonlinear convex optimization problems. Trial and free academic
licenses available at http://www.mosek.com.
Author: Henrik Alsing Friberg
Maintainer: Henrik Alsing Friberg
DESCRIPTION | 8
MD5 | 39 +-
NEWS | 50 +++
R/main.R | 6
R/obtain_sparsematrix.R |only
R/transformations.R | 33 +-
inst/doc/userguide.pdf |binary
man/mosek.Rd | 50 ++-
man/mosek_read.Rd | 13
man/mosek_write.Rd | 13
src/Rmosek.cc | 33 +-
src/rmsk_obj_arguments.cc | 10
src/rmsk_obj_arguments.h | 14
src/rmsk_obj_constraints.cc | 39 --
src/rmsk_obj_matrices.cc | 27 -
src/rmsk_utils_interface.cc | 16 -
src/rmsk_utils_mosek.cc | 695 ++++++++++++++++++++++++++------------------
src/rmsk_utils_mosek.h | 16 -
src/rmsk_utils_scopt.cc | 242 ++++++++++++---
src/rmsk_utils_scopt.h | 4
src/rmsk_utils_sexp.cc | 49 ++-
21 files changed, 902 insertions(+), 455 deletions(-)
Title: Segmentation Trees in Partial Least Squares Path Modeling
Diff between pathmox versions 0.1 dated 2010-08-10 and 0.1-1 dated 2012-03-15
Description: companion package of plspm with approaches of segmentation
trees in PLS Path Modeling.
Author: Gaston Sanchez, Tomas Aluja
Maintainer: Gaston Sanchez
DESCRIPTION | 14 +--
MD5 |only
NAMESPACE |only
R/fix.pathmox.R |only
R/fix.techmox.R |only
R/pathmox-internal.R | 183 +++++++++++++++++++++++++++++++++++++++++++++++++
man/pathmox-package.Rd | 10 +-
man/pathmox.Rd | 6 +
man/plspmox.Rd | 2
man/techmox.Rd | 6 +
man/treemox.pls.Rd | 2
11 files changed, 208 insertions(+), 15 deletions(-)
Title: A general-purpose package for dynamic report generation in R
Diff between knitr versions 0.3 dated 2012-02-28 and 0.4 dated 2012-03-15
Description: This package provides a general-purpose tool for dynamic
report generation in R, which can be used to deal with any type
of (plain text) files, including Sweave and HTML. The patterns
of code chunks and inline R expressions can be customized. R
code is evaluated as if it were copied and pasted in an R
terminal thanks to the evaluate package (e.g. we do not need to
explicitly print() plots from ggplot2 or lattice). R code can
be reformatted by the formatR package so that long lines are
automatically wrapped, with indent and spaces being added, and
comments being preserved. A simple caching mechanism is
provided to cache results from computations for the first time
and the computations will be skipped the next time. Almost all
common graphics devices, including those in base R and add-on
packages like Cairo, cairoDevice and tikzDevice, are built-in
with this package and it is straightforward to switch between
devices without writing any special functions. The width and
height as well as alignment of plots in the output document can
be specified in chunk options (the size of plots for graphics
devices is still supported as usual). Multiple plots can be
recorded in a single code chunk, and it is also allowed to
rearrange plots to the end of a chunk or just keep the last
plot. Warnings, messages and errors are written in the output
document by default (can be turned off). Currently LaTeX, HTML
and Markdown are supported, and other output formats can be
supported by hook functions. The large collection of hooks in
this package makes it possible for the user to control almost
everything in the R code input and output. Hooks can be used
either to format the output or to run a specified R code
fragment before or after a code chunk. Most features are
borrowed or inspired by Sweave, cacheSweave, pgfSweave, brew
and decumar.
Author: Yihui Xie
Maintainer: Yihui Xie
knitr-0.3/knitr/R/zzz.R |only
knitr-0.4/knitr/DESCRIPTION | 21
knitr-0.4/knitr/FAQ.md | 6
knitr-0.4/knitr/MD5 | 73 -
knitr-0.4/knitr/NAMESPACE | 1
knitr-0.4/knitr/NEWS | 110 ++
knitr-0.4/knitr/R/block.R | 44 -
knitr-0.4/knitr/R/cache.R | 146 ++-
knitr-0.4/knitr/R/concordance.R |only
knitr-0.4/knitr/R/defaults.R | 70 -
knitr-0.4/knitr/R/eclipse.R | 98 +-
knitr-0.4/knitr/R/header.R | 119 +--
knitr-0.4/knitr/R/hooks.R | 773 ++++++++++----------
knitr-0.4/knitr/R/output.R | 645 ++++++++--------
knitr-0.4/knitr/R/package.R | 41 -
knitr-0.4/knitr/R/parser.R | 64 -
knitr-0.4/knitr/R/pattern.R | 112 +-
knitr-0.4/knitr/R/plot.R | 245 +++---
knitr-0.4/knitr/R/themes.R | 110 +-
knitr-0.4/knitr/R/upload.R | 84 +-
knitr-0.4/knitr/R/utils.R | 228 ++---
knitr-0.4/knitr/inst/doc/knitr-intro.bib | 2
knitr-0.4/knitr/inst/doc/knitr-intro.pdf |binary
knitr-0.4/knitr/inst/examples/knitr-graphics.Rnw | 38
knitr-0.4/knitr/inst/examples/knitr-graphics.lyx | 131 +--
knitr-0.4/knitr/inst/examples/knitr-manual.Rnw | 69 +
knitr-0.4/knitr/inst/examples/knitr-manual.lyx | 151 +++
knitr-0.4/knitr/inst/examples/knitr-packages.bib | 4
knitr-0.4/knitr/inst/examples/knitr-subfloats.Rnw |only
knitr-0.4/knitr/inst/examples/knitr-subfloats.lyx |only
knitr-0.4/knitr/inst/examples/knitr-twocolumn.Rnw | 57 -
knitr-0.4/knitr/inst/examples/knitr-twocolumn.lyx | 294 -------
knitr-0.4/knitr/inst/examples/knitr-upload.md | 6
knitr-0.4/knitr/inst/examples/knitr-upload_knit_.md | 4
knitr-0.4/knitr/inst/tests/test-parser.R | 1
knitr-0.4/knitr/man/build_dep.Rd |only
knitr-0.4/knitr/man/imgur_upload.Rd | 28
knitr-0.4/knitr/man/knit.Rd | 8
knitr-0.4/knitr/man/output_hooks.Rd | 9
knitr-0.4/knitr/man/set_parent.Rd | 2
40 files changed, 1956 insertions(+), 1838 deletions(-)
Title: Dynamic models for survival data
Diff between dynsurv versions 0.1-3 dated 2011-11-27 and 0.1-7 dated 2012-03-15
Description: Functions to fit time-varying coefficient models for
interval censored and right censored survival data. Three major
approaches are implemented: 1) Bayesian Cox model with
time-independent, time-varying or dynamic coefficients for
right censored and interval censored data; 2) Spline based
time-varying coefficient Cox model for right censored data; 3)
Transformation model with time-varying coefficients for right
censored data using estimating equations.
Author: Xiaojing Wang
Maintainer: Jun Yan
dynsurv-0.1-3/dynsurv/src/Makevars |only
dynsurv-0.1-3/dynsurv/src/boostIncl |only
dynsurv-0.1-3/dynsurv/src/tiCox.cpp |only
dynsurv-0.1-7/dynsurv/ChangeLog | 18
dynsurv-0.1-7/dynsurv/DESCRIPTION | 33
dynsurv-0.1-7/dynsurv/MD5 | 1291 ----------------------
dynsurv-0.1-7/dynsurv/R/plot.R | 18
dynsurv-0.1-7/dynsurv/cleanup |only
dynsurv-0.1-7/dynsurv/configure |only
dynsurv-0.1-7/dynsurv/configure.ac |only
dynsurv-0.1-7/dynsurv/src/CoxModel.h | 364 +++---
dynsurv-0.1-7/dynsurv/src/DynamicCoxModel.h | 233 ++-
dynsurv-0.1-7/dynsurv/src/DynamicCoxModel_v2.h | 81 -
dynsurv-0.1-7/dynsurv/src/DynamicGORHModel.h | 251 ++--
dynsurv-0.1-7/dynsurv/src/DynamicModel.h | 958 ++++++++--------
dynsurv-0.1-7/dynsurv/src/GORHModel.h | 439 +++----
dynsurv-0.1-7/dynsurv/src/GibbsSampler.h | 395 +++---
dynsurv-0.1-7/dynsurv/src/IntRegData.h | 93 -
dynsurv-0.1-7/dynsurv/src/IntRegModel.h | 296 ++---
dynsurv-0.1-7/dynsurv/src/IntRegPar.cpp | 234 +--
dynsurv-0.1-7/dynsurv/src/IntRegPar.h | 472 ++++----
dynsurv-0.1-7/dynsurv/src/IntRegPrior.h | 305 ++---
dynsurv-0.1-7/dynsurv/src/Makevars.in |only
dynsurv-0.1-7/dynsurv/src/Makevars.win |only
dynsurv-0.1-7/dynsurv/src/TimeIndepCoxModel.h | 127 +-
dynsurv-0.1-7/dynsurv/src/TimeIndepGORHModel.h | 142 +-
dynsurv-0.1-7/dynsurv/src/TimeIndepModel.h | 159 +-
dynsurv-0.1-7/dynsurv/src/TimeVaryingCoxModel.h | 118 +-
dynsurv-0.1-7/dynsurv/src/TimeVaryingGORHModel.h | 138 +-
dynsurv-0.1-7/dynsurv/src/TimeVaryingModel.h | 400 +++---
dynsurv-0.1-7/dynsurv/src/arms.c | 1347 +++++++++++------------
dynsurv-0.1-7/dynsurv/src/arms.h | 10
dynsurv-0.1-7/dynsurv/src/bayesCox.cpp | 820 +++++++-------
dynsurv-0.1-7/dynsurv/src/rng.h | 21
dynsurv-0.1-7/dynsurv/src/ublas.h | 6
dynsurv-0.1-7/dynsurv/src/ublas_ext.h | 207 +--
36 files changed, 3935 insertions(+), 5041 deletions(-)
Title: diversitree: comparative phylogenetic analyses of
diversification
Diff between diversitree versions 0.7-2 dated 2011-05-13 and 0.9-1 dated 2012-03-15
Description: Contains a number of comparative phylogenetic methods,
mostly focussing on analysing diversification and character
evolution. Contains implementations of BiSSE (Binary State
Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
56: 701) and its unresolved tree extensions (FitzJohn et al.
2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
and Extinction), QuaSSE (Quantitative State Speciation and
Extinction; FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE
(Geographic State Speciation and Extinction; Goldberg et al.
2011: Syst. Biol. 60: 451), and BiSSE-ness (Magnuson-Ford and
Otto 2012: Am. Nat.) Other included methods include Markov
models of discrete and continuous trait evolution and constant
rate speciation and extinction.
Author: Richard G. FitzJohn
Maintainer: Richard G. FitzJohn
diversitree-0.7-2/diversitree/R/split-recycle.R |only
diversitree-0.9-1/diversitree/ChangeLog | 339 +++++++
diversitree-0.9-1/diversitree/DESCRIPTION | 23
diversitree-0.9-1/diversitree/MD5 |only
diversitree-0.9-1/diversitree/NAMESPACE | 77 +
diversitree-0.9-1/diversitree/R/asr-bisse-split.R |only
diversitree-0.9-1/diversitree/R/asr-bisse-t.R | 39
diversitree-0.9-1/diversitree/R/asr-bisse.R | 40
diversitree-0.9-1/diversitree/R/asr-mkn.R | 247 +----
diversitree-0.9-1/diversitree/R/asr-musse-split.R |only
diversitree-0.9-1/diversitree/R/asr-musse.R | 44
diversitree-0.9-1/diversitree/R/asr.R | 222 +---
diversitree-0.9-1/diversitree/R/check.R | 122 ++
diversitree-0.9-1/diversitree/R/combine.R |only
diversitree-0.9-1/diversitree/R/constrain.R | 35
diversitree-0.9-1/diversitree/R/cvodes.R | 2
diversitree-0.9-1/diversitree/R/diversitree-branches-C.R | 29
diversitree-0.9-1/diversitree/R/diversitree-branches.R | 262 +++--
diversitree-0.9-1/diversitree/R/history.R | 10
diversitree-0.9-1/diversitree/R/mcmc-hmc.R | 4
diversitree-0.9-1/diversitree/R/mcmc.R | 38
diversitree-0.9-1/diversitree/R/mle-subplexR.R | 2
diversitree-0.9-1/diversitree/R/mle-tgp.R | 2
diversitree-0.9-1/diversitree/R/mle.R | 94 +
diversitree-0.9-1/diversitree/R/model-bd-nee.R |only
diversitree-0.9-1/diversitree/R/model-bd-ode.R | 27
diversitree-0.9-1/diversitree/R/model-bd-split.R | 58 -
diversitree-0.9-1/diversitree/R/model-bd-t.R | 2
diversitree-0.9-1/diversitree/R/model-bd.R | 179 ---
diversitree-0.9-1/diversitree/R/model-bisse-split.R | 201 ++--
diversitree-0.9-1/diversitree/R/model-bisse-unresolved.R | 301 ------
diversitree-0.9-1/diversitree/R/model-bisse.R | 34
diversitree-0.9-1/diversitree/R/model-bisseness-unresolved.R |only
diversitree-0.9-1/diversitree/R/model-bisseness.R |only
diversitree-0.9-1/diversitree/R/model-bm-direct.R |only
diversitree-0.9-1/diversitree/R/model-bm-vcv.R |only
diversitree-0.9-1/diversitree/R/model-bm.R | 117 --
diversitree-0.9-1/diversitree/R/model-classe.R |only
diversitree-0.9-1/diversitree/R/model-geosse-split.R |only
diversitree-0.9-1/diversitree/R/model-geosse.R | 240 +----
diversitree-0.9-1/diversitree/R/model-linear-deriv.R | 57 -
diversitree-0.9-1/diversitree/R/model-mkn-exp.R |only
diversitree-0.9-1/diversitree/R/model-mkn-multitrait.R |only
diversitree-0.9-1/diversitree/R/model-mkn-ode.R |only
diversitree-0.9-1/diversitree/R/model-mkn.R | 266 +----
diversitree-0.9-1/diversitree/R/model-musse-multitrait.R |only
diversitree-0.9-1/diversitree/R/model-musse-split.R | 113 --
diversitree-0.9-1/diversitree/R/model-musse-t.R | 5
diversitree-0.9-1/diversitree/R/model-musse-td.R | 13
diversitree-0.9-1/diversitree/R/model-musse.R | 77 -
diversitree-0.9-1/diversitree/R/model-ou.R |only
diversitree-0.9-1/diversitree/R/model-quasse-common.R | 51 -
diversitree-0.9-1/diversitree/R/model-quasse-fftC.R | 74 -
diversitree-0.9-1/diversitree/R/model-quasse-fftR.R | 14
diversitree-0.9-1/diversitree/R/model-quasse-mol.R | 12
diversitree-0.9-1/diversitree/R/model-quasse-split.R | 241 ++---
diversitree-0.9-1/diversitree/R/model-quasse.R | 283 +++---
diversitree-0.9-1/diversitree/R/plot-alt-extra.R | 67 +
diversitree-0.9-1/diversitree/R/plot-alt-util.R | 38
diversitree-0.9-1/diversitree/R/plot-alt.R | 30
diversitree-0.9-1/diversitree/R/profiles-plot.R | 8
diversitree-0.9-1/diversitree/R/sim-character.R |only
diversitree-0.9-1/diversitree/R/simulate-bisse.R | 2
diversitree-0.9-1/diversitree/R/simulate-musse.R | 29
diversitree-0.9-1/diversitree/R/simulation.R | 8
diversitree-0.9-1/diversitree/R/split.R | 518 +++++------
diversitree-0.9-1/diversitree/R/t.R | 87 -
diversitree-0.9-1/diversitree/R/td.R | 61 -
diversitree-0.9-1/diversitree/R/util.R | 52 -
diversitree-0.9-1/diversitree/TAGS |only
diversitree-0.9-1/diversitree/configure | 18
diversitree-0.9-1/diversitree/configure.ac | 23
diversitree-0.9-1/diversitree/data/geosse.rda |binary
diversitree-0.9-1/diversitree/man/asr-bisse.Rd | 18
diversitree-0.9-1/diversitree/man/asr-mkn.Rd | 64 -
diversitree-0.9-1/diversitree/man/asr.Rd | 8
diversitree-0.9-1/diversitree/man/check.Rd |only
diversitree-0.9-1/diversitree/man/find.mle.Rd | 39
diversitree-0.9-1/diversitree/man/make.bd.Rd | 27
diversitree-0.9-1/diversitree/man/make.bd.split.Rd | 6
diversitree-0.9-1/diversitree/man/make.bd.t.Rd | 2
diversitree-0.9-1/diversitree/man/make.bisse.Rd | 13
diversitree-0.9-1/diversitree/man/make.bisse.split.Rd | 15
diversitree-0.9-1/diversitree/man/make.bisseness.Rd |only
diversitree-0.9-1/diversitree/man/make.bm.Rd | 66 +
diversitree-0.9-1/diversitree/man/make.classe.Rd |only
diversitree-0.9-1/diversitree/man/make.geosse.Rd | 115 --
diversitree-0.9-1/diversitree/man/make.geosse.split.Rd |only
diversitree-0.9-1/diversitree/man/make.mkn.Rd | 42
diversitree-0.9-1/diversitree/man/make.musse.Rd | 13
diversitree-0.9-1/diversitree/man/make.musse.multitrait.Rd |only
diversitree-0.9-1/diversitree/man/make.prior.Rd | 18
diversitree-0.9-1/diversitree/man/make.quasse.Rd | 32
diversitree-0.9-1/diversitree/man/make.quasse.split.Rd | 7
diversitree-0.9-1/diversitree/man/mcmc.Rd | 11
diversitree-0.9-1/diversitree/man/plot.history.Rd | 3
diversitree-0.9-1/diversitree/man/sim.character.Rd |only
diversitree-0.9-1/diversitree/man/simulate.Rd | 21
diversitree-0.9-1/diversitree/man/trait.plot.Rd |only
diversitree-0.9-1/diversitree/src/asr-joint.c |only
diversitree-0.9-1/diversitree/src/bisse-eqs.c | 31
diversitree-0.9-1/diversitree/src/bisseness-eqs.c |only
diversitree-0.9-1/diversitree/src/bucexp.f | 386 +-------
diversitree-0.9-1/diversitree/src/classe-eqs.c |only
diversitree-0.9-1/diversitree/src/cvodes/cvodes.c | 9
diversitree-0.9-1/diversitree/src/cvodes/cvodes_io.c | 2
diversitree-0.9-1/diversitree/src/cvodes/nvector_serial.c | 5
diversitree-0.9-1/diversitree/src/cvodes/sundials_direct.c | 5
diversitree-0.9-1/diversitree/src/cvodes_all_branches.c | 44
diversitree-0.9-1/diversitree/src/cvodes_asr_marginal.c | 21
diversitree-0.9-1/diversitree/src/cvodes_interface.c | 3
diversitree-0.9-1/diversitree/src/cvodes_interface_fwd.c | 1
diversitree-0.9-1/diversitree/src/cvodes_obj.c | 16
diversitree-0.9-1/diversitree/src/cvodes_obj_fwd.c | 1
diversitree-0.9-1/diversitree/src/dgpadm.f | 4
diversitree-0.9-1/diversitree/src/dmexpv.f | 53 -
diversitree-0.9-1/diversitree/src/dsexpv.f | 51 -
diversitree-0.9-1/diversitree/src/dsexpvi.f | 53 -
diversitree-0.9-1/diversitree/src/geosse-eqs.c | 62 +
diversitree-0.9-1/diversitree/src/mkn-eqs.c |only
diversitree-0.9-1/diversitree/src/mkn.c | 139 ++
diversitree-0.9-1/diversitree/src/mkn.h |only
diversitree-0.9-1/diversitree/src/musse-eqs.c | 40
diversitree-0.9-1/diversitree/src/nucexp.f |only
diversitree-0.9-1/diversitree/src/scm-mkn.c |only
diversitree-0.9-1/diversitree/src/scm-mkn.h |only
126 files changed, 3240 insertions(+), 3143 deletions(-)
Title: Deducer
Diff between Deducer versions 0.6-2 dated 2012-03-05 and 0.6-3 dated 2012-03-15
Description: An intuitive, cross-platform graphical data analysis
system. It uses menus and dialogs to guide the user efficiently
through the data manipulation and analysis process, and has an
excel like spreadsheet for easy data frame visualization and
editing. Deducer works best when used with the Java based R GUI
JGR, but the dialogs can be called from the command line.
Dialogs have also been integrated into the Windows Rgui.
Author: Ian Fellows
Maintainer: Ian Fellows
._DESCRIPTION |binary
._NAMESPACE |binary
._NEWS |binary
DESCRIPTION | 4 ++--
MD5 | 14 +++++++-------
R/zzz.R | 6 +++---
inst/java/._quaqua.jar |binary
inst/java/deducer.jar |binary
inst/java/quaqua/._libquaqua.jnilib |binary
inst/java/quaqua/._libquaqua64.jnilib |binary
java/._quaqua.jar |binary
java/quaqua/._libquaqua.jnilib |binary
java/quaqua/._libquaqua64.jnilib |binary
javasrc/deducer/._Deducer.java |binary
javasrc/deducer/Deducer.java | 2 +-
javasrc/deducer/plots/PlotController.java | 2 +-
javasrc/deducer/plots/Theme.java | 5 +++--
javasrc/deducer/widgets/param/RFunctionDialog.java | 2 +-
18 files changed, 18 insertions(+), 17 deletions(-)
Title: Create cryptographic hash digests of R objects
Diff between digest versions 0.5.1 dated 2011-09-21 and 0.5.2 dated 2012-03-15
Description: The digest package provides a function 'digest()' for the
creation of hash digests of arbitrary R objects (using the md5,
sha-1, sha-256 and crc32 algorithms) permitting easy comparison
of R language objects, as well as a function 'hmac()' to create
hash-based message authentication code.
The md5 algorithm by Ron Rivest is specified in RFC 1321, the SHA-1 and
SHA-256 algorithms are specified in FIPS-180-1 and FIPS-180-2,
and the crc32 algorithm is described in
ftp://ftp.rocksoft.com/cliens/rocksoft/papers/crc_v3.txt. For
md5, sha-1 and sha-256, this package uses a small standalone
implementations that were provided by Christophe Devine. For
crc32, code from the zlib library is used.
Please note that this package is not meant to be deployed for
cryptographic purposes for which more comprehensive (and widely
tested) libraries such as OpenSSL should be used.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 17 +++++++++++++++++
DESCRIPTION | 14 +++++++-------
MD5 | 12 ++++++------
R/digest.R | 8 ++++----
src/digest.c | 10 +++++-----
tests/digestTest.R | 13 ++++++++++---
tests/digestTest.Rout.save | 35 +++++++++++++++++++++--------------
7 files changed, 70 insertions(+), 39 deletions(-)
Title: Bayesian Factor Analysis
Diff between bfa versions 0.2.2 dated 2011-11-02 and 0.2.3 dated 2012-03-15
Description: This package provides model fitting for several Bayesian
factor models including Gaussian, ordinal probit, mixed and
semiparametric Gaussian copula factor models under a range of
priors.
Author: Jared Murray
Maintainer: Jared Murray
bfa-0.2.2/bfa/NEWS |only
bfa-0.2.2/bfa/make_docs.Rout |only
bfa-0.2.3/bfa/DESCRIPTION | 18 +++++++++---------
bfa-0.2.3/bfa/MD5 | 35 +++++++++++++++++------------------
bfa-0.2.3/bfa/NAMESPACE | 10 +++++-----
bfa-0.2.3/bfa/R/bfa-package.R | 3 ++-
bfa-0.2.3/bfa/R/class.R | 2 +-
bfa-0.2.3/bfa/R/main.R | 6 +++---
bfa-0.2.3/bfa/bfa_0.2.3.tar.gz |only
bfa-0.2.3/bfa/make_docs.R | 6 +++---
bfa-0.2.3/bfa/man/HPDinterval.bfa.Rd | 4 ++--
bfa-0.2.3/bfa/man/bfa-package.Rd | 5 +++--
bfa-0.2.3/bfa/man/bfa_copula.Rd | 22 ++++++++++++----------
bfa-0.2.3/bfa/man/bfa_gauss.Rd | 11 ++++++-----
bfa-0.2.3/bfa/man/bfa_mixed.Rd | 15 ++++++++-------
bfa-0.2.3/bfa/man/bfa_model.Rd | 4 ++--
bfa-0.2.3/bfa/man/get_coda.Rd | 4 ++--
bfa-0.2.3/bfa/man/plot_loadings.Rd | 4 ++--
bfa-0.2.3/bfa/man/predict.bfa.Rd | 4 ++--
bfa-0.2.3/bfa/man/ratings08.Rd | 4 +---
20 files changed, 80 insertions(+), 77 deletions(-)