Title: Generate high-resolution Venn and Euler plots
Diff between VennDiagram versions 1.1.3 dated 2012-02-17 and 1.2.0 dated 2012-04-29
Description: A set of functions to generate high-resolution Venn and
Euler plots. Includes handling for several special cases,
including two-case scaling, and extensive customization of plot
shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++++----------
R/draw.120.R | 1 +
R/draw.121AO.R | 6 +++---
R/draw.pairwise.venn.R | 15 ++++++++-------
R/draw.quad.venn.R | 3 ++-
R/draw.single.venn.R | 2 +-
R/draw.triple.venn.R | 15 +++++++++++----
man/VennDiagram-internal.Rd | 4 ----
man/VennDiagram-package.Rd | 4 ++--
man/draw.pairwise.venn.Rd |only
man/draw.quad.venn.Rd |only
man/draw.single.venn.Rd |only
man/draw.triple.venn.Rd |only
man/venn.diagram.Rd | 7 +++++--
15 files changed, 51 insertions(+), 38 deletions(-)
Title: A general-purpose package for dynamic report generation in R
Diff between knitr versions 0.4 dated 2012-03-15 and 0.5 dated 2012-04-29
Description: This package provides a general-purpose tool for dynamic
report generation in R, which can be used to deal with any type
of (plain text) files, including Sweave, HTML, Markdown and
reStructuredText. The patterns of code chunks and inline R
expressions can be customized. R code is evaluated as if it
were copied and pasted in an R terminal thanks to the evaluate
package (e.g. we do not need to explicitly print() plots from
ggplot2 or lattice). R code can be reformatted by the formatR
package so that long lines are automatically wrapped, with
indent and spaces being added, and comments being preserved. A
simple caching mechanism is provided to cache results from
computations for the first time and the computations will be
skipped the next time. Almost all common graphics devices,
including those in base R and add-on packages like Cairo,
cairoDevice and tikzDevice, are built-in with this package and
it is straightforward to switch between devices without writing
any special functions. The width and height as well as
alignment of plots in the output document can be specified in
chunk options (the size of plots for graphics devices is still
supported as usual). Multiple plots can be recorded in a single
code chunk, and it is also allowed to rearrange plots to the
end of a chunk or just keep the last plot. Warnings, messages
and errors are written in the output document by default (can
be turned off). Currently LaTeX, HTML, Markdown and reST are
supported, and other output formats can be supported by hook
functions. The large collection of hooks in this package makes
it possible for the user to control almost everything in the R
code input and output. Hooks can be used either to format the
output or to run a specified R code fragment before or after a
code chunk. The language in code chunks is not restricted to R
only (there is simple support to Python and Awk, etc). Many
features are borrowed or inspired by Sweave, cacheSweave,
pgfSweave, brew and decumar.
Author: Yihui Xie
Maintainer: Yihui Xie
knitr-0.4/knitr/inst/doc/knitr-intro.bib |only
knitr-0.4/knitr/inst/examples/knitr-latex_knit_.tex |only
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knitr-0.5/knitr/DESCRIPTION | 83 +--
knitr-0.5/knitr/MD5 | 140 ++---
knitr-0.5/knitr/NAMESPACE | 8
knitr-0.5/knitr/NEWS | 145 +++++
knitr-0.5/knitr/R/block.R | 77 +-
knitr-0.5/knitr/R/cache.R | 7
knitr-0.5/knitr/R/citation.R |only
knitr-0.5/knitr/R/defaults.R | 150 +++--
knitr-0.5/knitr/R/engine.R |only
knitr-0.5/knitr/R/header.R | 150 ++---
knitr-0.5/knitr/R/hooks-chunk.R |only
knitr-0.5/knitr/R/hooks-extra.R |only
knitr-0.5/knitr/R/hooks-html.R |only
knitr-0.5/knitr/R/hooks-latex.R |only
knitr-0.5/knitr/R/hooks-md.R |only
knitr-0.5/knitr/R/hooks-rst.R |only
knitr-0.5/knitr/R/hooks.R | 466 -----------------
knitr-0.5/knitr/R/output.R | 204 ++++---
knitr-0.5/knitr/R/parser.R | 47 +
knitr-0.5/knitr/R/pattern.R | 39 -
knitr-0.5/knitr/R/plot.R | 8
knitr-0.5/knitr/R/themes.R | 62 +-
knitr-0.5/knitr/R/upload.R | 2
knitr-0.5/knitr/R/utils.R | 102 ++-
knitr-0.5/knitr/README.md | 2
knitr-0.5/knitr/inst/doc/knitr-intro.Rnw | 14
knitr-0.5/knitr/inst/doc/knitr-intro.lyx | 4
knitr-0.5/knitr/inst/doc/knitr-intro.pdf |binary
knitr-0.5/knitr/inst/examples/knit-all.R | 2
knitr-0.5/knitr/inst/examples/knitr-beamer.Rnw | 12
knitr-0.5/knitr/inst/examples/knitr-beamer.lyx | 46 +
knitr-0.5/knitr/inst/examples/knitr-graphics.Rnw | 48 -
knitr-0.5/knitr/inst/examples/knitr-graphics.lyx | 152 ++---
knitr-0.5/knitr/inst/examples/knitr-lang.Rmd |only
knitr-0.5/knitr/inst/examples/knitr-lang.md |only
knitr-0.5/knitr/inst/examples/knitr-latex.Rtex |only
knitr-0.5/knitr/inst/examples/knitr-listings.Rnw | 3
knitr-0.5/knitr/inst/examples/knitr-listings.lyx | 10
knitr-0.5/knitr/inst/examples/knitr-manual.Rnw | 90 +--
knitr-0.5/knitr/inst/examples/knitr-manual.lyx | 82 ++
knitr-0.5/knitr/inst/examples/knitr-minimal.Rhtml |only
knitr-0.5/knitr/inst/examples/knitr-minimal.Rmd |only
knitr-0.5/knitr/inst/examples/knitr-minimal.Rnw | 4
knitr-0.5/knitr/inst/examples/knitr-minimal.Rrst |only
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knitr-0.5/knitr/inst/examples/knitr-minimal.rst |only
knitr-0.5/knitr/inst/examples/knitr-packages.bib | 79 ++
knitr-0.5/knitr/inst/examples/knitr-subfloats.Rnw | 4
knitr-0.5/knitr/inst/examples/knitr-subfloats.lyx | 14
knitr-0.5/knitr/inst/examples/knitr-themes.Rnw | 3
knitr-0.5/knitr/inst/examples/knitr-themes.lyx | 10
knitr-0.5/knitr/inst/examples/knitr-twocolumn.Rnw | 4
knitr-0.5/knitr/inst/examples/knitr-twocolumn.lyx | 8
knitr-0.5/knitr/inst/examples/knitr-upload.Rmd |only
knitr-0.5/knitr/inst/examples/knitr-upload.md | 20
knitr-0.5/knitr/inst/misc/knitr-template.Rhtml |only
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knitr-0.5/knitr/inst/misc/knitr.sty |only
knitr-0.5/knitr/inst/tests/test-output.R | 15
knitr-0.5/knitr/inst/tests/test-parser.R | 10
knitr-0.5/knitr/inst/tests/test-patterns.R |only
knitr-0.5/knitr/inst/themes/.knitr.css |only
knitr-0.5/knitr/inst/themes/default.css |only
knitr-0.5/knitr/man/all_patterns.Rd | 8
knitr-0.5/knitr/man/chunk_hook.Rd | 24
knitr-0.5/knitr/man/hook_plot.Rd | 12
knitr-0.5/knitr/man/imgur_upload.Rd | 3
knitr-0.5/knitr/man/knit.Rd | 47 +
knitr-0.5/knitr/man/knit2html.Rd |only
knitr-0.5/knitr/man/knit2pdf.Rd | 8
knitr-0.5/knitr/man/knit_child.Rd | 12
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knitr-0.5/knitr/man/knit_env.Rd | 7
knitr-0.5/knitr/man/knit_patterns.Rd | 8
knitr-0.5/knitr/man/output_hooks.Rd | 44 +
knitr-0.5/knitr/man/pat_fun.Rd | 6
knitr-0.5/knitr/man/run_chunk.Rd | 13
knitr-0.5/knitr/man/set_parent.Rd | 8
knitr-0.5/knitr/man/stitch.Rd | 7
knitr-0.5/knitr/man/write_bib.Rd |only
87 files changed, 1262 insertions(+), 1292 deletions(-)
Title: Analysis of habitat selection by animals
Diff between adehabitatHS versions 0.3.3 dated 2012-02-28 and 0.3.4 dated 2012-04-29
Description: A collection of tools for the analysis of habitat
selection
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge
DESCRIPTION | 13 ++++++-------
MD5 | 22 ++++++++++++----------
R/biv.test.r | 5 ++---
R/niche.test.r |only
inst/doc/adehabitatHS.pdf |binary
man/biv.test.Rd | 4 ++--
man/enfa.Rd | 2 +-
man/histniche.Rd | 2 +-
man/kselect.Rd | 7 +------
man/niche.test.Rd |only
man/predict.enfa.Rd | 2 +-
man/scatter.enfa.Rd | 2 +-
man/scatterniche.Rd | 2 +-
13 files changed, 28 insertions(+), 33 deletions(-)
Title: Home range Estimation
Diff between adehabitatHR versions 0.3.4 dated 2012-01-25 and 0.4.1 dated 2012-04-29
Description: A collection of tools for the estimation of animals home
range
Author: Clement Calenge, contributions from Scott Fortmann-Roe
Maintainer: Clement Calenge
DESCRIPTION | 12
MD5 | 27
NAMESPACE | 2
R/CharHull.r | 2
R/LoCoH.r | 52 +
R/clusthr.r | 18
R/getverticeshr.r | 2
R/hidden.r |only
R/mcp.r | 4
inst/doc/adehabitatHR.Rnw | 17
inst/doc/adehabitatHR.pdf | 1807 +++++++++++++++++++++-------------------------
man/CharHull.Rd | 6
man/LoCoH.Rd | 3
man/MCHu.Rd | 16
man/getverticeshr.Rd | 1
15 files changed, 933 insertions(+), 1036 deletions(-)
Title: L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in
the Cox model
Diff between penalized versions 0.9-38 dated 2012-02-16 and 0.9-39 dated 2012-04-29
Description: A package for fitting possibly high dimensional penalized
regression models. The penalty structure can be any combination
of an L1 penalty (lasso), an L2 penalty (ridge) and a
positivity constraint on the regression coefficients. The
supported regression models are linear, logistic and poisson
regression and the Cox Proportional Hazards model.
Cross-validation routines allow optimization of the tuning
parameters.
Author: Jelle Goeman
Maintainer: Jelle Goeman
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/checkinput.R | 9 +++++++--
R/cox.R | 3 ++-
changelog.txt | 5 +++++
inst/doc/penalized.Rnw | 6 ++++++
inst/doc/penalized.pdf |binary
vignettes/penalized.Rnw | 6 ++++++
8 files changed, 37 insertions(+), 14 deletions(-)
Title: Fitting and Predict Time Series Interactive Laboratory
Diff between TSTutorial versions 1.0 dated 2012-04-15 and 1.1 dated 2012-04-29
Description: Interactive laboratory of Time Series based in Box-Jenkins
metodology.
Author: Alberto Lopez Moreno
Maintainer: Alberto Lopez Moreno
TSTutorial-1.0/TSTutorial/inst/Tutorial.txt |only
TSTutorial-1.1/TSTutorial/DESCRIPTION | 8
TSTutorial-1.1/TSTutorial/MD5 | 15 -
TSTutorial-1.1/TSTutorial/R/3auxfunc.r | 4
TSTutorial-1.1/TSTutorial/inst/doc/Stationary.pdf |binary
TSTutorial-1.1/TSTutorial/inst/doc/Stationary.rnw | 16 -
TSTutorial-1.1/TSTutorial/inst/doc/Tutorial.pdf |binary
TSTutorial-1.1/TSTutorial/inst/doc/Tutorial.rnw | 50 ++--
TSTutorial-1.1/TSTutorial/inst/english.txt | 228 +++++++++++-----------
9 files changed, 164 insertions(+), 157 deletions(-)
More information about BayesSingleSub at CRAN
Permanent link
Title: Space-Time Point Pattern simulation, visualisation and analysis
Diff between stpp versions 0.1 dated 2012-04-21 and 0.2 dated 2012-04-29
Description: A package for analysing, simulating and displaying
space-time point patterns
Author: Edith Gabriel, Peter J Diggle, stan function by Barry
Rowlingson
Maintainer: Edith Gabriel
DESCRIPTION | 13 +++++++------
MD5 | 8 ++++----
R/plotK.R | 10 +++++-----
man/STIKhat.Rd | 15 +++++++++++----
man/animation.Rd | 2 +-
5 files changed, 28 insertions(+), 20 deletions(-)
Title: Empirical likelihood ratio for censored/truncated data
Diff between emplik versions 0.9-7 dated 2011-10-09 and 0.9-8 dated 2012-04-29
Description: empirical likelihood ratio tests for
means/quantiles/hazards from possibly censored and/or truncated
data. Now does regression too.
Author: Mai Zhou. (Art Owen for el.test())
Maintainer: Mai Zhou
emplik-0.9-7/emplik/INDEX |only
emplik-0.9-8/emplik/DESCRIPTION | 6 -
emplik-0.9-8/emplik/MD5 | 12 +--
emplik-0.9-8/emplik/NAMESPACE |only
emplik-0.9-8/emplik/R/el.test.R | 16 ++---
emplik-0.9-8/emplik/README | 103 ++++++++++++++++-----------------
emplik-0.9-8/emplik/data/myeloma.rda |binary
emplik-0.9-8/emplik/data/smallcell.rda |binary
8 files changed, 68 insertions(+), 69 deletions(-)