Wed, 16 May 2012

Package Rmpfr updated to version 0.4-7 with previous version 0.4-6 dated 2012-02-06

Title: R MPFR - Multiple Precision Floating-Point Reliable
Description: Rmpfr provides S4 classes and methods for arithmetic including transcendental ("special") functions for arbitrary precision floating point numbers. To this end, it interfaces to the LGPL'ed MPFR (Multiple Precision Floating-Point Reliable) Library which itself is based on the GMP (GNU Multiple Precision) Library.
Author: Martin Maechler
Maintainer: Martin Maechler

Diff between Rmpfr versions 0.4-6 dated 2012-02-06 and 0.4-7 dated 2012-05-16

 ChangeLog                         |   17 +++++
 DESCRIPTION                       |   14 ++--
 MD5                               |  119 ++++++++++++++++++++++++++++++--------
 NAMESPACE                         |   19 +++---
 R/AllClasses.R                    |   14 +++-
 R/Arith.R                         |   10 +++
 R/Math.R                          |   12 +++
 R/array.R                         |   28 ++++----
 R/as.R                            |   16 +++--
 R/gmp-convert.R                   |   23 ++++++-
 R/mpfr.R                          |   16 ++---
 R/special-fun.R                   |    4 -
 TODO                              |   10 ++-
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 man/is.whole.Rd                   |   21 ++++--
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 tests/special-fun-ex.R            |   14 ++--
 32 files changed, 382 insertions(+), 160 deletions(-)

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Package M3 updated to version 0.3 with previous version 0.2 dated 2012-01-12

Title: Reading M3 files
Description: This package contains functions to read in and manipulate air quality model output from Models3-formatted files. This format is used by the Community Multiscale Air Quaility (CMAQ) model.
Author: Jenise Swall
Maintainer: Jenise Swall

Diff between M3 versions 0.2 dated 2012-01-12 and 0.3 dated 2012-05-16

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 12 files changed, 53 insertions(+), 44 deletions(-)

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Package sampSurf updated to version 0.6-4 with previous version 0.6-2 dated 2012-04-04

Title: Sampling Surface Simulation for Areal Sampling Methods
Description: This package provides the base classes and routines for sampling surface simulation useful in the comparison of different areal sampling methods in forestry, ecology and natural resources.
Author: Jeffrey H. Gove
Maintainer: Jeffrey H. Gove

Diff between sampSurf versions 0.6-2 dated 2012-04-04 and 0.6-4 dated 2012-05-16

 DESCRIPTION                         |   10 +--
 MD5                                 |   38 +++++------
 R/izContainerConstructors.R         |   96 +++++++++++++++++++++++++++++
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 man/standingTreeIZs-methods.Rd      |   39 ++++++++++-
 20 files changed, 279 insertions(+), 107 deletions(-)

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Package WMTregions updated to version 3.2.5 with previous version 3.2.4 dated 2012-02-02

Title: Exact Calculation of WMTR
Description: R realization of an exact algorithm for calculating the weighted-mean trimmed regions
Author: Pavel Bazovkin
Maintainer: Pavel Bazovkin

Diff between WMTregions versions 3.2.4 dated 2012-02-02 and 3.2.5 dated 2012-05-16

 DESCRIPTION               |    6 +++---
 MD5                       |    7 ++++---
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 man/WMTregions-package.Rd |    2 +-
 5 files changed, 10 insertions(+), 8 deletions(-)

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Package spatstat updated to version 1.27-0 with previous version 1.26-1 dated 2012-04-19

Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).
Author: Adrian Baddeley and Rolf Turner with substantial contributions of code by Kasper Klitgaard Berthelsen; Abdollah Jalilian; Marie-Colette van Lieshout; Ege Rubak; Dominic Schuhmacher; and Rasmus Waagepetersen. Additional contributions by Q.W. Ang; S. Azaele; C. Beale; R. Bernhardt; B. Biggerstaff; R. Bivand; F. Bonneu; J. Burgos; S. Byers; Y.M. Chang; J.B. Chen; I. Chernayavsky; Y.C. Chin; B. Christensen; J.-F. Coeurjolly; M. de la Cruz; P. Dalgaard; P.J. Diggle; I. Dryden; S. Eglen; N. Funwi-Gabga; A. Gault; M. Genton; P. Grabarnik; C. Graf; J. Franklin; U. Hahn; A. Hardegen; M. Hering; M.B. Hansen; M. Hazelton; J. Heikkinen; K. Hornik; R. Ihaka; A. Jammalamadaka; R. John-Chandran; D. Johnson; M. Kuhn; J. Laake; R.A. Lamb; J. Lee; G.P. Leser; B. Madin; R. Mark; J. Mateu; P. McCullagh; U. Mehlig; S. Meyer; X.C. Mi; J. Moller; L.S. Nielsen; F. Nunes; J. Oehlschlaegel; T. Onkelinx; E. Parilov; J. Picka; S. Protsiv; A. Raftery; M. Reiter; T.O. Richardson; B.D. Ripley; B. Rowlingson; J. Rudge; A. Sarkka; K. Schladitz; B.T. Scott; G.C. Shen; V. Shcherbakov; I.-M. Sintorn; Y. Song; M. Spiess; M. Stevenson; K. Stucki; M. Sumner; P. Surovy; B. Taylor; B. Turlach; A. van Burgel; T. Verbeke; A. Villers; H. Wang; H. Wendrock; J. Wild and S. Wong.
Maintainer: Adrian Baddeley

Diff between spatstat versions 1.26-1 dated 2012-04-19 and 1.27-0 dated 2012-05-16

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 spatstat-1.27-0/spatstat/R/affine.R                 |  160 +++++++++-
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 spatstat-1.27-0/spatstat/R/linearK.R                |    6 
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 spatstat-1.27-0/spatstat/R/model.depends.R          |   15 
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 121 files changed, 2384 insertions(+), 910 deletions(-)

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Package SemiParBIVProbit updated to version 3.2-1 with previous version 3.2 dated 2012-05-08

Title: Semiparametric Bivariate Probit Modelling
Description: Routine for fitting bivariate probit models with semiparametric predictors (including linear, nonlinear and nonparametric random effects) in the presence of correlated error equations, endogeneity or sample selection.
Author: Giampiero Marra and Rosalba Radice with contributions from Georgios Papageorgiou
Maintainer: Giampiero Marra

Diff between SemiParBIVProbit versions 3.2 dated 2012-05-08 and 3.2-1 dated 2012-05-16

 ChangeLog                       |    3 +++
 DESCRIPTION                     |    6 +++---
 MD5                             |   18 +++++++++---------
 R/LM.bpm.r                      |   13 ++++++++++++-
 man/LM.bpm.Rd                   |    2 +-
 man/SemiParBIVProbit-package.Rd |    2 ++
 man/SemiParBIVProbit.Rd         |    4 +++-
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 man/summary.SemiParBIVProbit.Rd |    5 +++--
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 10 files changed, 49 insertions(+), 17 deletions(-)

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Package RProtoBuf updated to version 0.2.4 with previous version 0.2.3 dated 2011-04-13

Title: R Interface to the Protocol Buffers API
Description: Protocol Buffers are a way of encoding structured data in an efficient yet extensible format. Google uses Protocol Buffers for almost all of its internal RPC protocols and file formats.
Author: Romain Francois and Dirk Eddelbuettel
Maintainer: Romain and Dirk

Diff between RProtoBuf versions 0.2.3 dated 2011-04-13 and 0.2.4 dated 2012-05-16

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Package relsurv updated to version 2.0-2 with previous version 2.0-1 dated 2012-03-21

Title: Relative survival
Description: Various functions for relative survival analysis.
Author: Maja Pohar Perme [aut, cre]
Maintainer: Maja Pohar Perme

Diff between relsurv versions 2.0-1 dated 2012-03-21 and 2.0-2 dated 2012-05-16

 DESCRIPTION |    8 ++++----
 MD5         |    4 ++--
 R/Rcode.r   |   10 +++++-----
 3 files changed, 11 insertions(+), 11 deletions(-)

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New package igraphdata with initial version 0.1
Package: igraphdata
Version: 0.1
Date: 2012-05-11
Title: A collection of network data sets for the igraph package
Author: Gabor Csardi
Maintainer: Gabor Csardi
Depends: R (>= 2.10)
Suggests: igraph0, igraph
Description: A small collection of various network data sets, to use with the igraph package. They also work with the igraph0 package.
License: GPL (>= 2) + file LICENSE
URL: http://igraph.sourceforge.net
BugReports: http://bugs.launchpad.net/igraph
Packaged: 2012-05-15 04:00:29 UTC; gaborcsardi
Repository: CRAN
Date/Publication: 2012-05-16 13:43:43

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New package primer with initial version 1.0
Package: primer
Type: Package
Title: Functions and data for A Primer of Ecology with R
Version: 1.0
Date: 2012-05-16
Author: M Henry H Stevens
Maintainer: Hank Stevens
Depends: deSolve, lattice
Suggests: bbmle, gdata, nlme, vegan
Description: Functions are primarily functions for systems of ordinary differential equations, difference equations, and eigenanalysis and projection of demographic matrices; data are for examples.
License: GPL
LazyLoad: yes
Packaged: 2012-05-16 11:17:29 UTC; mhhs
Repository: CRAN
Date/Publication: 2012-05-16 11:49:09

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Package gmp updated to version 0.5-2 with previous version 0.5-1 dated 2012-01-21

Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals, prime number tests, matrix computation), "arithmetic without limitations" using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme , Sylvain Jasson , Martin Maechler
Maintainer: Antoine Lucas

Diff between gmp versions 0.5-1 dated 2012-01-21 and 0.5-2 dated 2012-05-16

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New package fishmove with initial version 0.0-1
Package: fishmove
Type: Package
Title: Prediction of Fish Movement Parameters
Version: 0.0-1
Packaged: 2012-05-16 08:12:10 UTC; Johannes Radinger
Date/Publication: 2012-05-16 10:48:44
Author: Johannes Radinger
Maintainer: Johannes Radinger
Description: Functions to predict fish movement parameters based on multiple regression and plotting leptokurtic fish dispersal kernels
License: GPL (>= 2)
Depends: ggplot2, plyr
LazyLoad: yes
LazyData: yes
URL:
Repository: CRAN

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Package adaptMCMC updated to version 1.0.3 with previous version 1.0.2 dated 2012-01-03

Title: Implementation of a generic adaptive Monte Carlo Markov Chain sampler
Description: This package provides an implementation of the generic adaptive Monte Carlo Markov chain sampler proposed by Vihola (2011).
Author: Andreas Scheidegger, ,
Maintainer: Andreas Scheidegger

Diff between adaptMCMC versions 1.0.2 dated 2012-01-03 and 1.0.3 dated 2012-05-16

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Package SDMTools updated to version 1.1-12 with previous version 1.1-11 dated 2012-04-10

Title: Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises
Description: This packages provides a set of tools for post processing the outcomes of species distribution modeling exercises. It includes novel methods for comparing models and tracking changes in distributions through time. It further includes methods for visualizing outcomes, selecting thresholds, calculating measures of accuracy and landscape fragmentation statistics, etc.. This package was made possible in part by financial support from the Australian Research Council & ARC Research Network for Earth System Science.
Author: Jeremy VanDerWal, Lorena Falconi, Stephanie Januchowski, Luke Shoo and Collin Storlie
Maintainer: Jeremy VanDerWal

Diff between SDMTools versions 1.1-11 dated 2012-04-10 and 1.1-12 dated 2012-05-16

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Package QUIC updated to version 1.0 with previous version 2012.02 dated 2012-02-29

Title: Regularized sparse inverse covariance matrix estimation
Description: Use Newton's method and coordinate descent to solve the regularized inverse covariance matrix estimation problem. Please refer to: Sparse Inverse Covariance Matrix Estimation Using Quadratic Approximation, Cho-Jui Hsieh, Matyas A. Sustik, Inderjit S. Dhillon, Pradeep Ravikumar, Advances in Neural Information Processing Systems 24, 2011, p. 2330--2338.
Author: Cho-Jui Hsieh [aut], Matyas A. Sustik [aut, cre], Inderjit S. Dhillon [aut], Pradeep Ravikumar [aut]
Maintainer: Matyas A. Sustik

Diff between QUIC versions 2012.02 dated 2012-02-29 and 1.0 dated 2012-05-16

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Package lifecontingencies updated to version 0.9.3 with previous version 0.9.2 dated 2012-04-09

Title: Package to perform actuarial mathematics for life contingencies insurances
Description: Financial and actuarial functions to evaluate life contingencies.
Author: Giorgio A. Spedicato
Maintainer: Giorgio A. Spedicato

Diff between lifecontingencies versions 0.9.2 dated 2012-04-09 and 0.9.3 dated 2012-05-16

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Package bayesm updated to version 2.2-5 with previous version 2.2-4 dated 2011-02-27

Title: Bayesian Inference for Marketing/Micro-econometrics
Description: bayesm covers many important models used in marketing and micro-econometrics applications. The package includes: Bayes Regression (univariate or multivariate dep var), Bayes Seemingly Unrelated Regression (SUR), Binary and Ordinal Probit, Multinomial Logit (MNL) and Multinomial Probit (MNP), Multivariate Probit, Negative Binomial (Poisson) Regression, Multivariate Mixtures of Normals (including clustering), Dirichlet Process Prior Density Estimation with normal base, Hierarchical Linear Models with normal prior and covariates, Hierarchical Linear Models with a mixture of normals prior and covariates, Hierarchical Multinomial Logits with a mixture of normals prior and covariates, Hierarchical Multinomial Logits with a Dirichlet Process prior and covariates, Hierarchical Negative Binomial Regression Models, Bayesian analysis of choice-based conjoint data, Bayesian treatment of linear instrumental variables models, and Analysis of Multivariate Ordinal survey data with scale usage heterogeneity (as in Rossi et al, JASA (01)). For further reference, consult our book, Bayesian Statistics and Marketing by Rossi, Allenby and McCulloch.
Author: Peter Rossi .
Maintainer: Peter Rossi

Diff between bayesm versions 2.2-4 dated 2011-02-27 and 2.2-5 dated 2012-05-16

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