Title: R Commander Plug-in for the survival Package
Diff between RcmdrPlugin.survival versions 1.0-0 dated 2011-01-03 and 1.0-1 dated 2012-05-19
More information about RcmdrPlugin.survival at CRAN
Description: This package provides an R Commander plug-in for the
survival package, with dialogs for Cox models, parametric
survival regression models, estimation of survival curves, and
testing for differences in survival curves, along with
data-management facilities and a variety of tests, diagnostics
and graphs.
Author: John Fox
Maintainer: John Fox
DESCRIPTION | 12 -
MD5 |only
NAMESPACE |only
R/CoxModel.R | 231 +++++++++++++++++++----
R/Survdiff.R | 167 ++++++++++++----
R/Survfit.R | 345 ++++++++++++++++++++++++++++-------
R/plot.coxph.R | 285 ++++++++++++++++++++++++----
R/startup.R | 36 ++-
R/survregModel.R | 274 +++++++++++++++++++++++----
data/Dialysis.rda |binary
data/Rossi.rda |binary
inst/CHANGES | 10 +
inst/etc/menus.txt | 4
man/RcmdrPlugin.survival-internal.Rd | 2
man/RcmdrPlugin.survival-package.Rd | 4
po/R-RcmdrPlugin.survival.pot | 15 +
16 files changed, 1140 insertions(+), 245 deletions(-)
Permanent link
Title: Stable isotope analysis
Diff between IsotopeR versions 0.4.1 dated 2012-02-19 and 0.4.2 dated 2012-05-19
Description: Estimates diet contributions from isotopic sources using
JAGS. Includes estimation of concentration dependence and
measurement error.
Author: Jake Ferguson and Jack Hopkins
Maintainer: Jake Ferguson
IsotopeR-0.4.1/IsotopeR/inst/doc/IsotopeR.log.u1conflict |only
IsotopeR-0.4.1/IsotopeR/inst/doc/IsotopeR.tex.backup |only
IsotopeR-0.4.2/IsotopeR/DESCRIPTION | 6 ++--
IsotopeR-0.4.2/IsotopeR/MD5 | 10 ++-----
IsotopeR-0.4.2/IsotopeR/NEWS | 3 ++
IsotopeR-0.4.2/IsotopeR/R/IsotopeRgui.R | 21 +++++++++++++--
IsotopeR-0.4.2/IsotopeR/inst/doc/IsotopeR.pdf |binary
7 files changed, 29 insertions(+), 11 deletions(-)
Title: Seismic Time Series Analysis Tools
Diff between RSEIS versions 3.0-1 dated 2012-03-09 and 3.0-6 dated 2012-05-19
Description: Multiple interactive codes to view and analyze seismic
data, via spectrum analysis, wavelet transforms, particle
motion, hodograms. Includes general time-series tools,
plotting, filtering, interactive display.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 8 -
MD5 | 84 ++++++++-------
NEWS | 4
R/DECIMATE.SEISN.R |only
R/DISPLACE.SEISN.R | 4
R/EPOCHyear.R | 9 +
R/ETECTG.R | 2
R/FILT.SEISN.R | 5
R/GAZI.R | 8 +
R/JGET.seis.R | 11 +-
R/JSAC.seis.R | 3
R/JSEGY.seis.R | 33 +++++-
R/Mine.seis.R | 5
R/PLOT.MATN.R | 4
R/PMOT.drive.R | 268 +++++++++++++++++++++++++++++++++++++++-----------
R/PreSet.Instr.R | 19 +++
R/SENSORsensitivity.R | 13 +-
R/VELOCITY.SEISN.R | 4
R/filedatetime.R | 8 -
R/getseis24.R | 2
R/many.time1D.R | 9 +
R/markseis24.R | 31 +++--
R/plotDB.R | 2
R/plotseis24.R | 30 +++--
R/recdate.R | 2
R/rseis2sac.R |only
R/selWPX.R | 47 +++++---
R/swig.R | 6 -
R/travel.time1D.R | 9 +
R/write1sac.R |only
inst/doc/hodo.pdf |binary
inst/doc/rseis.pdf |binary
man/DECIMATE.SEISN.Rd |only
man/DISPLACE.SEISN.Rd | 5
man/JGET.seis.Rd | 6 -
man/JSAC.seis.Rd | 8 -
man/Mine.seis.Rd | 6 -
man/RSEIS-package.Rd | 4
man/VELOCITY.SEISN.Rd | 4
man/filedatetime.Rd | 8 +
man/markseis24.Rd | 9 +
man/plotseis24.Rd | 25 +++-
man/rseis2sac.Rd |only
man/selAPX.Rd | 4
man/swig.Rd | 5
man/write1sac.Rd |only
46 files changed, 523 insertions(+), 191 deletions(-)
Title: Seismic Hypocenter Determination
Diff between Rquake versions 1.3-2 dated 2012-02-01 and 1.6-3 dated 2012-05-19
Description: Rquake is a package for analaysis of seismic data
collected continuously, or in trigger mode. The functions
organize other functions from RSEIS and GEOmap to help
researchers pick, locate, and store hypocenters for detailed
seismic investigation.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 6 ++--
MD5 | 68 ++++++++++++++++++++++++++++++++++++--------------
R/CONTPF.R | 4 +-
R/DistWeight.R |only
R/DoRLocate.R |only
R/DoUWLocate.R |only
R/EQXYresid.R | 50 ++++++++++++------------------------
R/GETpsTT.R |only
R/Gfirstguess.R | 2 -
R/INITpickfile.R | 2 -
R/Klocate.R | 17 ++++++------
R/LeftjustTime.R |only
R/OnePerSta.R | 2 -
R/PCsaveWPX.R | 49 +++++++++++++++++++++++++-----------
R/Qrangedatetime.R |only
R/RQ.R | 8 ++---
R/Rowz2Keep.R |only
R/SaveCSV.R | 45 ++++++++++++++++++++++-----------
R/SavePF.R | 31 +++++++++++++---------
R/Vlocate.R |only
R/XYerror.bars.R |only
R/XYlocate.R |only
R/chak.R | 4 +-
R/clusterWPX.R | 4 --
R/contPFarrivals.R | 2 -
R/editPIX.R |only
R/eqlipse.R |only
R/eqwrapup.R |only
R/gMAP.R | 2 -
R/getGAP.R |only
R/getresidTT.R |only
R/lastPIX.R |only
R/legitWPX.R |only
R/viewCHAC.R | 53 +++++++++++++++++++-------------------
R/viewseis.R | 2 -
man/DistWeight.Rd |only
man/DoRLocate.Rd |only
man/GETpsTT.Rd |only
man/LeftjustTime.Rd |only
man/Qrangedatetime.Rd |only
man/Rowz2Keep.Rd |only
man/Rquake-package.Rd | 2 -
man/Vlocate.Rd |only
man/XYerror.bars.Rd |only
man/XYlocate.Rd |only
man/eqlipse.Rd |only
man/eqwrapup.Rd |only
man/getGAP.Rd |only
man/getresidTT.Rd |only
man/lastPIX.Rd |only
man/legitWPX.Rd |only
51 files changed, 205 insertions(+), 148 deletions(-)
Title: Various plotting functions
Diff between plotrix versions 3.4 dated 2012-04-01 and 3.4-1 dated 2012-05-19
Description: Lots of plots, various labeling, axis and color scaling
functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry
Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi,
Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl
Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa
Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos, Robby
Engelmann, Michael Hecker, Felix Steinbeck, Hans Borchers,
Henrik Singmann
Maintainer: Jim Lemon
DESCRIPTION | 11 +++---
INDEX | 3 +
MD5 | 43 ++++++++++++++-----------
NAMESPACE | 3 +
NEWS | 7 ++++
R/add.ps.R |only
R/barNest.R | 5 +-
R/feather.plot.R | 2 +
R/kiteChart.R | 61 ++++++++++++++++++++++++++++-------
R/pie3D.R | 78 +++++++++++++++++++++++++---------------------
R/pyramid.plot.R | 2 -
R/radial.plot.R | 2 -
R/raw.means.plot.R |only
R/rm.plot2.R |only
R/sizetree.R | 16 ++++-----
data/soils.rda |binary
man/add.ps.Rd |only
man/barNest.Rd | 5 ++
man/dendroPlot.Rd | 3 +
man/draw.tilted.sector.Rd | 2 -
man/feather.plot.Rd | 11 ++++--
man/kiteChart.Rd | 24 +++++++++++---
man/pie3D.Rd | 23 ++++++++-----
man/pie3D.labels.Rd | 5 +-
man/raw.means.plot.Rd |only
25 files changed, 202 insertions(+), 104 deletions(-)
More information about RcmdrPlugin.SCDA at CRAN
Permanent link
Title: doBy - Groupwise summary statistics, general linear contrasts,
population means (least-squares-means), and other utilities
Diff between doBy versions 4.5.2 dated 2012-02-16 and 4.5-3 dated 2012-05-19
Description: doBy contains a variety of utilities including: 1)
Facilities for groupwise computations of summary statistics and
other facilities for working with grouped data. 2) General
linear contrasts and LSMEANS (least-squares-means also known as
population means), 3) Rscript2HTML for autmatic generation of
HTML file from R-script with a minimum of markup, 4) other
utilities. doBy originally contained facilities for 'doing
something to data where data would be partitioned by some
variables which define groupings of data' - hence the name
doBy.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
doBy-4.5-3/doBy/ChangeLog | 7
doBy-4.5-3/doBy/DESCRIPTION | 6
doBy-4.5-3/doBy/MD5 | 41 +-
doBy-4.5-3/doBy/R/Rmarkup.R | 239 ++++++++++------
doBy-4.5-3/doBy/data/codstom.rda |binary
doBy-4.5-3/doBy/data/dietox.rda |binary
doBy-4.5-3/doBy/data/milkman.RData |binary
doBy-4.5-3/doBy/doBy-Ex.R | 3
doBy-4.5-3/doBy/inst/Rmarkup |only
doBy-4.5-3/doBy/inst/doc/doBy.pdf |binary
doBy-4.5-3/doBy/inst/doc/popMeans.pdf |binary
doBy-4.5-3/doBy/man/Rmarkup.Rd | 12
doBy-4.5-3/doBy/vignettes/figures/doBy-042.pdf |binary
doBy-4.5-3/doBy/vignettes/figures/doBy-043.pdf |binary
doBy-4.5-3/doBy/vignettes/figures/doBy-044.pdf |binary
doBy-4.5-3/doBy/vignettes/figures/doBy-046.pdf |binary
doBy-4.5-3/doBy/vignettes/figures/doBy-048.pdf |binary
doBy-4.5-3/doBy/vignettes/figures/doBy-052.pdf |binary
doBy-4.5-3/doBy/vignettes/figures/doBy-053.pdf |binary
doBy-4.5.2/doBy/inst/HTMLreport |only
doBy-4.5.2/doBy/vignettes/Example1-Puromycin-REPORT.pdf |only
doBy-4.5.2/doBy/vignettes/Example1-Puromycin.R |only
doBy-4.5.2/doBy/vignettes/Example1-Puromycin.pdf |only
doBy-4.5.2/doBy/vignettes/PuromycinAnalysis-report.R |only
doBy-4.5.2/doBy/vignettes/PuromycinAnalysis-report.pdf |only
25 files changed, 187 insertions(+), 121 deletions(-)
Title: Binomial linear and linear-expit regression
Diff between blm versions 2011.2.0 dated 2011-11-23 and 2012.2.1 dated 2012-05-19
Description: Implements regression models for binary data on the
absolute risk scale. These models are applicable to cohort and
populaiton-based case-control data.
Author: S. Kovalchik
Maintainer: S.Kovalchik
blm-2011.2.0/blm/R/allClasses.R |only
blm-2011.2.0/blm/R/allMethods.R |only
blm-2011.2.0/blm/R/check.active.constraints.R |only
blm-2011.2.0/blm/R/check.missing.R |only
blm-2011.2.0/blm/R/ci.logistic.R |only
blm-2011.2.0/blm/R/expit.R |only
blm-2011.2.0/blm/R/hessian.R |only
blm-2011.2.0/blm/R/hosmerlem.R |only
blm-2011.2.0/blm/R/ineq.constraints.R |only
blm-2011.2.0/blm/R/likelihood.R |only
blm-2011.2.0/blm/R/logistic.baseline.R |only
blm-2011.2.0/blm/R/logistic.rd.R |only
blm-2011.2.0/blm/R/plot.R |only
blm-2011.2.0/blm/R/projected.starting.values.R |only
blm-2011.2.0/blm/data/grad.RData |only
blm-2011.2.0/blm/inst/doc/RJournal.sty |only
blm-2011.2.0/blm/inst/doc/goodness_of_fit.pdf |only
blm-2011.2.0/blm/inst/doc/goodness_of_fit2.pdf |only
blm-2011.2.0/blm/man/blm.rr.Rd |only
blm-2011.2.0/blm/man/ci.Rd |only
blm-2011.2.0/blm/man/ci.blm.Rd |only
blm-2011.2.0/blm/man/ci.logit.transform.Rd |only
blm-2011.2.0/blm/man/hosmerlem.Rd |only
blm-2011.2.0/blm/man/is.constrained.Rd |only
blm-2011.2.0/blm/man/logistic.baseline.Rd |only
blm-2011.2.0/blm/man/logistic.dispersion.Rd |only
blm-2011.2.0/blm/man/logistic.rd.Rd |only
blm-2011.2.0/blm/man/logistic.rr.Rd |only
blm-2011.2.0/blm/man/plot.Rd |only
blm-2011.2.0/blm/man/subresample.Rd |only
blm-2011.2.0/blm/man/vcovBoot.Rd |only
blm-2011.2.0/blm/methods |only
blm-2012.2.1/blm/DESCRIPTION | 16
blm-2012.2.1/blm/MD5 | 108
blm-2012.2.1/blm/NAMESPACE | 29
blm-2012.2.1/blm/NEWS |only
blm-2012.2.1/blm/R/Rsquared.R | 23
blm-2012.2.1/blm/R/blm.R | 195 -
blm-2012.2.1/blm/R/class.R |only
blm-2012.2.1/blm/R/gof.R |only
blm-2012.2.1/blm/R/gof.pearson.R |only
blm-2012.2.1/blm/R/helpers.R |only
blm-2012.2.1/blm/R/influence.R |only
blm-2012.2.1/blm/R/lexpit.R | 234 +-
blm-2012.2.1/blm/R/optim.lexpit.R |only
blm-2012.2.1/blm/R/predict.R |only
blm-2012.2.1/blm/R/stage1.optim.R |only
blm-2012.2.1/blm/R/stage2.optim.R |only
blm-2012.2.1/blm/R/tapply.risk.R |only
blm-2012.2.1/blm/R/which.constrained.R |only
blm-2012.2.1/blm/data/ccdata.RData |only
blm-2012.2.1/blm/dev |only
blm-2012.2.1/blm/inst/doc/.Rapp.history | 2837 ++++++-------------------
blm-2012.2.1/blm/inst/doc/blm.Rnw | 329 --
blm-2012.2.1/blm/inst/doc/blm.pdf |binary
blm-2012.2.1/blm/inst/doc/influence.pdf |only
blm-2012.2.1/blm/man/EO.Rd | 46
blm-2012.2.1/blm/man/Rsquared.Rd |only
blm-2012.2.1/blm/man/blm-class.Rd | 62
blm-2012.2.1/blm/man/blm-package.Rd | 13
blm-2012.2.1/blm/man/blm.Rd | 77
blm-2012.2.1/blm/man/confint.Rd |only
blm-2012.2.1/blm/man/dbeta.Rd |only
blm-2012.2.1/blm/man/expit.Rd | 1
blm-2012.2.1/blm/man/gof.Rd | 38
blm-2012.2.1/blm/man/gof.pearson.Rd |only
blm-2012.2.1/blm/man/grad.Rd | 23
blm-2012.2.1/blm/man/lexpit-class.Rd | 70
blm-2012.2.1/blm/man/lexpit.Rd | 84
blm-2012.2.1/blm/man/logit.Rd |only
blm-2012.2.1/blm/man/predict.Rd | 10
blm-2012.2.1/blm/man/print.Rd | 15
blm-2012.2.1/blm/man/resid.Rd | 27
blm-2012.2.1/blm/man/show.Rd | 12
blm-2012.2.1/blm/man/summary.Rd | 56
blm-2012.2.1/blm/man/vcov.Rd | 7
blm-2012.2.1/blm/man/which.constrained.Rd | 43
77 files changed, 1443 insertions(+), 2912 deletions(-)