Title: Metabolomic Univariate and Multivariate Analysis
Diff between muma versions 1.1 dated 2012-05-18 and 1.2 dated 2012-05-24
Description: Preprocessing of metabolomic data (normalization and
scalings); Principal Component Analysis with help tool for
choosing best-separating principal components and automatic
outlier testing; automatic univariate analysis for parametric
and non-parametric data, with report generation (volcano and
box plots); partial least sqaure discriminant analysis
(PLS-DA); orthogonal partial least square discriminant analysis
(OPLS-DA); Statistical Total Correlation Spectroscopy (STOCSY);
Ratio Analysis NMR SpectroscopY (RANSY).
Author: Edoardo Gaude, Francesca Chignola, Dimitrios Spiliotopoulos,
Silvia Mari, Andrea Spitaleri and Michela Ghitti
Maintainer: Edoardo gaude
muma-1.1/muma/data/MetaBc.csv.gz |only
muma-1.2/muma/DESCRIPTION | 10 +++++-----
muma-1.2/muma/MD5 | 11 +++++------
muma-1.2/muma/NAMESPACE | 1 +
muma-1.2/muma/R/Plot.plsda.R | 10 +++++-----
muma-1.2/muma/man/Plot.plsda.Rd | 20 ++++++++++----------
muma-1.2/muma/man/muma-package.Rd | 2 +-
7 files changed, 27 insertions(+), 27 deletions(-)
Title: Adaptive Weights Smoothing
Diff between aws versions 1.7-1 dated 2011-12-11 and 1.8-0 dated 2012-05-24
Description: The package contains R-functions implementing the
Propagation-Separation Approach to adaptive smoothing as
described in J. Polzehl and V. Spokoiny (2006),
Propagation-Separation Approach for Local Likelihood
Estimation, Prob. Theory and Rel. Fields, 135(3):335--362. and
J. Polzehl and V. Spokoiny (2004) Spatially adaptive regression
estimation: Propagation-separation approach, WIAS-Preprint 998.
Author: Joerg Polzehl
Maintainer: Joerg Polzehl
DESCRIPTION | 25 +++----
MD5 | 60 ++++++++++++-----
NAMESPACE | 7 ++
R/Classes.r | 91 ++++++++++++++++++++++++--
R/ICIsmooth.r |only
R/aws.r | 41 ++++++------
R/awsgaussian.r | 4 -
R/awsirregular.r | 4 -
R/awspropagation.r |only
R/awssegment.r | 21 +++---
R/lpaws.r | 2
R/misc.r | 84 ++++++++++++++++--------
R/onLoad.r.in | 10 --
R/setCores.r |only
R/utilities.r |only
README | 6 +
configure | 162 ++++++++++++++++++++++++++++++++----------------
configure.ac | 51 ++++++++++-----
inst/CITATION |only
man/ICIcombined.Rd |only
man/ICIsmooth-class.Rd |only
man/ICIsmooth.Rd |only
man/aws-class.Rd |only
man/aws-package.Rd | 12 +++
man/awssegment-class.Rd |only
man/awstestprop.Rd |only
man/extract-methods.Rd |only
man/kernsm-class.Rd |only
man/kernsm.Rd |only
man/plot-methods.Rd |only
man/print-methods.Rd |only
man/risk-methods.Rd |only
man/setCores.Rd |only
man/show-methods.Rd |only
man/summary-methods.Rd |only
src/ICIsmooth.f |only
src/Makevars | 2
src/Makevars.in | 5 -
src/caws.f | 63 ++++++++----------
src/cawsmask.f | 2
src/omp_funcs.c |only
src/segment.f | 71 +++++++++++----------
42 files changed, 477 insertions(+), 246 deletions(-)
More information about WeightedPortTest at CRAN
Permanent link
Title: Creates Random Forest and Stochastic Gradient Boosting Models,
and applies them to GIS .img files to build detailed prediction
maps.
Diff between ModelMap versions 2.1.1 dated 2011-04-23 and 2.3.1 dated 2012-05-24
Description: This package will create sophisticated models of training
data and validate the models with an independant test set,
cross validation, or in the case of Random Forest Models, with
Out OF Bag (OOB) predictions on the training data. It will
creat graphs and tables of the model validation results. It
will apply these models to GIS .img files of predictors to
create detailed prediction surfaces. It will handle large
predictor files for map making, by reading in the .img files in
chuncks, and output to the .txt file the prediction for each
data chunk, before reading the next chenk of data.
Author: Elizabeth Freeman, Tracey Frescino
Maintainer: Elizabeth Freeman
ModelMap-2.1.1/ModelMap/inst/doc |only
ModelMap-2.1.1/ModelMap/inst/external/vignetteexamples |only
ModelMap-2.3.1/ModelMap/COPYRIGHTS | 4
ModelMap-2.3.1/ModelMap/DESCRIPTION | 12
ModelMap-2.3.1/ModelMap/MD5 |only
ModelMap-2.3.1/ModelMap/NAMESPACE |only
ModelMap-2.3.1/ModelMap/R/internal.R | 1131 +++++---
ModelMap-2.3.1/ModelMap/R/model.build.R | 197 +
ModelMap-2.3.1/ModelMap/R/model.diagnostics.R | 254 +
ModelMap-2.3.1/ModelMap/R/model.importance.plot.R |only
ModelMap-2.3.1/ModelMap/R/model.interaction.plot.R | 124
ModelMap-2.3.1/ModelMap/R/model.mapmake.R | 115
ModelMap-2.3.1/ModelMap/inst/CHANGELOG | 52
ModelMap-2.3.1/ModelMap/inst/external/helpexamples/DATATEST.csv | 668 ++---
ModelMap-2.3.1/ModelMap/inst/external/helpexamples/DATATRAIN.csv | 1292 +++++-----
ModelMap-2.3.1/ModelMap/inst/vignettes |only
ModelMap-2.3.1/ModelMap/man/ModelMap-package.Rd | 14
ModelMap-2.3.1/ModelMap/man/build.rastLUT.Rd | 8
ModelMap-2.3.1/ModelMap/man/get.test.Rd | 9
ModelMap-2.3.1/ModelMap/man/internal.Rd | 14
ModelMap-2.3.1/ModelMap/man/model.build.Rd | 31
ModelMap-2.3.1/ModelMap/man/model.diagnostics.Rd | 54
ModelMap-2.3.1/ModelMap/man/model.importance.plot.Rd |only
ModelMap-2.3.1/ModelMap/man/model.interaction.plot.Rd | 66
ModelMap-2.3.1/ModelMap/man/model.mapmake.Rd | 36
25 files changed, 2426 insertions(+), 1655 deletions(-)
Title: Dynamic models for survival data
Diff between dynsurv versions 0.1-7 dated 2012-03-15 and 0.1-8 dated 2012-05-24
Description: Functions to fit time-varying coefficient models for
interval censored and right censored survival data. Three major
approaches are implemented: 1) Bayesian Cox model with
time-independent, time-varying or dynamic coefficients for
right censored and interval censored data; 2) Spline based
time-varying coefficient Cox model for right censored data; 3)
Transformation model with time-varying coefficients for right
censored data using estimating equations.
Author: Xiaojing Wang
Maintainer: Jun Yan
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
src/DynamicCoxModel.h | 8 ++++----
src/TimeIndepCoxModel.h | 4 ++--
src/TimeVaryingCoxModel.h | 4 ++--
5 files changed, 16 insertions(+), 16 deletions(-)
Title: Simultaneous generation of multivariate binary and normal
variates.
Diff between BinNor versions 1.0 dated 2011-11-05 and 2.0 dated 2012-05-24
Description: Generating multiple binary and normal variables
simultaneously given marginal characteristics and association
structure based on the methodology proposed by Demirtas and
Doganay (2012).
Author: Anup Amatya, Hakan Demirtas
Maintainer: Anup Amatya
DESCRIPTION | 13 ++++++++-----
MD5 | 21 +++++++++++----------
NAMESPACE |only
man/BinNor-package.Rd | 10 ++--------
man/compute.sigma.star.Rd | 5 +----
man/jointly.generate.binary.normal.Rd | 19 ++-----------------
man/lower.tri.to.corr.mat.Rd | 30 +++---------------------------
man/simulation.Rd | 27 +--------------------------
man/validation.bin.Rd | 31 +------------------------------
man/validation.corr.Rd | 20 --------------------
man/validation.nor.Rd | 34 +---------------------------------
man/validation.range.Rd | 29 -----------------------------
12 files changed, 30 insertions(+), 209 deletions(-)
Title: analysis of complex survey samples
Diff between survey versions 3.28 dated 2012-02-03 and 3.28-1 dated 2012-05-24
Description: Summary statistics, two-sample tests, generalised linear
models, cumulative link models, Cox models, loglinear models,
and general maximum pseudolikelihood estimation for multistage
stratified, cluster-sampled, unequally weighted survey samples.
Variances by Taylor series linearisation or replicate weights.
Post-stratification, calibration, and raking. Two-phase
subsampling designs. Graphics. Predictive margins by direct
standardization. PPS sampling without replacement. Principal
components, factor analysis.
Author: Thomas Lumley
Maintainer: Thomas Lumley
DESCRIPTION | 6 +-
MD5 | 96 ++++++++++++++++----------------
NAMESPACE | 1
R/multistage.R | 4 -
R/multivariate.R | 2
R/olr.R | 9 ++-
R/regtest.R | 8 ++
R/survey.R | 5 +
R/surveyby.R | 24 +++++---
R/surveygraph.R | 4 -
R/surveyrep.R | 42 ++++++++------
R/sysdata.rda |binary
R/twophase2.R | 14 ++--
THANKS | 1
data/api.rda |binary
data/crowd.rda |binary
data/election.rda |binary
data/fpc.rda |binary
data/hospital.rda |binary
data/mu284.rda |binary
data/scd.rda |binary
inst/CITATION | 6 +-
inst/NEWS | 17 +++++
inst/doc/domain.pdf |binary
inst/doc/epi.pdf |binary
inst/doc/phase1.pdf |binary
inst/doc/pps.pdf |binary
inst/doc/survey.pdf |binary
man/SE.Rd | 2
man/as.fpc.Rd | 2
man/as.svrepdesign.Rd | 6 +-
man/as.svydesign2.Rd | 2
man/dimnames.DBIsvydesign.Rd | 5 +
man/marginpred.Rd | 3 -
man/svrVar.Rd | 2
man/svrepdesign.Rd | 11 ++-
man/svyCprod.Rd | 2
man/svyby.Rd | 22 ++++++-
man/svycontrast.Rd | 5 +
man/svyolr.Rd | 8 ++
tests/caleg.Rout.save | 129 +++++++++++++++++++++----------------------
tests/deff.Rout.save | 23 ++++---
tests/domain.R | 4 -
tests/domain.Rout.save | 29 +++------
tests/lonely.psu.Rout.save | 22 +------
tests/nwts-cch.Rout.save | 14 +---
tests/rakecheck.Rout.save | 47 ++++++++-------
tests/twophase.R | 8 +-
tests/twophase.Rout.save | 38 +++++-------
49 files changed, 335 insertions(+), 288 deletions(-)