Title: tnet: Software for Analysis of Weighted, Two-mode, and
Longitudinal networks
Diff between tnet versions 3.0.5 dated 2011-05-04 and 3.0.6 dated 2012-06-22
Description: R package to analyse weighted, two-mode, and longitudinal
networks.
Author: Tore Opsahl
Maintainer: Tore Opsahl
tnet-3.0.5/tnet/R/zzz.r |only
tnet-3.0.5/tnet/data/Cross.Parker.Consulting.RData |only
tnet-3.0.5/tnet/data/Cross.Parker.Manufacturing.RData |only
tnet-3.0.5/tnet/data/Davis.Southern.women.RData |only
tnet-3.0.5/tnet/data/Freemans.EIES.RData |only
tnet-3.0.5/tnet/data/Newman.Condmat.95.99.RData |only
tnet-3.0.5/tnet/data/OnlineSocialNetwork.n1899.RData |only
tnet-3.0.5/tnet/data/USairport.n500.RData |only
tnet-3.0.5/tnet/data/celegans.n306.RData |only
tnet-3.0.6/tnet/ChangeLog | 2 +-
tnet-3.0.6/tnet/DESCRIPTION | 10 +++++-----
tnet-3.0.6/tnet/MD5 |only
tnet-3.0.6/tnet/NAMESPACE |only
tnet-3.0.6/tnet/R/betweenness_w.R | 6 +++---
tnet-3.0.6/tnet/R/dichotomise.R | 4 ++--
tnet-3.0.6/tnet/R/distance_w.R | 16 ++++++++--------
tnet-3.0.6/tnet/R/package.R |only
tnet-3.0.6/tnet/R/reinforcement_tm.R |only
tnet-3.0.6/tnet/R/rg_reshuffling_w.R | 8 ++++----
tnet-3.0.6/tnet/R/tnet_igraph.R | 8 ++++----
tnet-3.0.6/tnet/R/weighted_richclub_w.R | 2 +-
tnet-3.0.6/tnet/data/datalist |only
tnet-3.0.6/tnet/data/tnet.RData |only
tnet-3.0.6/tnet/inst/CITATION | 2 +-
tnet-3.0.6/tnet/man/Cross.Parker.Consulting.Rd | 2 +-
tnet-3.0.6/tnet/man/Cross.Parker.Manufacturing.Rd | 2 +-
tnet-3.0.6/tnet/man/Davis.Southern.women.Rd | 2 +-
tnet-3.0.6/tnet/man/Freemans.EIES.Rd | 2 +-
tnet-3.0.6/tnet/man/Newman.Condmat.95.99.Rd | 2 +-
tnet-3.0.6/tnet/man/OnlineSocialNetwork.n1899.Rd | 8 +++-----
tnet-3.0.6/tnet/man/USairport.n500.net.Rd | 2 +-
tnet-3.0.6/tnet/man/celegans.n306.Rd | 2 +-
tnet-3.0.6/tnet/man/reinforcement_tm.Rd |only
tnet-3.0.6/tnet/man/rg_reshuffling_tm.Rd | 4 ++--
tnet-3.0.6/tnet/man/rg_w.Rd | 2 +-
tnet-3.0.6/tnet/man/tnet-package.Rd | 5 ++---
tnet-3.0.6/tnet/man/weighted_richclub_tm.Rd | 2 +-
37 files changed, 45 insertions(+), 48 deletions(-)
Title: Amelia II: A Program for Missing Data
Diff between Amelia versions 1.6.1 dated 2012-03-29 and 1.6.3 dated 2012-06-22
Description: Amelia II "multiply imputes" missing data in a single
cross-section (such as a survey), from a time series (like
variables collected for each year in a country), or from a
time-series-cross-sectional data set (such as collected by
years for each of several countries). Amelia II implements our
bootstrapping-based algorithm that gives essentially the same
answers as the standard IP or EMis approaches, is usually
considerably faster than existing approaches and can handle
many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but
please let us know if you find to the contrary!). The program
also generalizes existing approaches by allowing for trends in
time series across observations within a cross-sectional unit,
as well as priors that allow experts to incorporate beliefs
they have about the values of missing cells in their data.
Amelia II also includes useful diagnostics of the fit of
multiple imputation models. The program works from the R
command line or via a graphical user interface that does not
require users to know R.
Author: James Honaker
Maintainer: Matthew Blackwell
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/amcheck.r | 9 +++++----
R/mo.R | 14 ++++++++------
inst/doc/amelia.Rnw | 2 +-
inst/doc/amelia.pdf |binary
6 files changed, 23 insertions(+), 20 deletions(-)
Title: Forecast verification utilities.
Diff between verification versions 1.32 dated 2012-04-13 and 1.33 dated 2012-06-22
Description: This package contains utilities for verification of
discrete,continuous, probabilistic forecasts and forecast
expressed as parametric distributions.
Author: NCAR - Research Application Program
Maintainer: Eric Gilleland
DESCRIPTION | 6 -
MD5 | 16 ++--
R/summary.bin.bin.R | 12 ++-
R/table.stats.R | 8 +-
R/verify.r | 176 +++++++++++++++++++++++-----------------------
inst/doc/verification.pdf |binary
man/pop.Rd | 2
man/rps.Rd | 2
man/verify.Rd | 19 +++-
9 files changed, 130 insertions(+), 111 deletions(-)
Title: General Polygon Clipping Library for R
Diff between gpclib versions 1.5-1 dated 2010-02-03 and 1.5-3 dated 2012-06-22
Description: General polygon clipping routines for R based on Alan
Murta's C library
Author: Roger D. Peng
Maintainer: Roger D. Peng
DESCRIPTION | 10 +++++-----
MD5 |only
R/zzz.R | 7 +------
src/gpc.c | 9 ++++-----
tests/bug1.R |only
tests/bug1.Rout.save |only
tests/bug1_data.RData |only
tests/reg-tests.Rout.save | 7 ++++---
8 files changed, 14 insertions(+), 19 deletions(-)
Title: Shared Reproducibility Package Management
Diff between SRPM versions 0.1-6 dated 2010-04-12 and 0.1-7 dated 2012-06-22
Description: A package development and management system for
distributed reproducible research
Author: Roger D. Peng
Maintainer: Roger D. Peng
SRPM-0.1-6/SRPM/inst/doc/SRPM.tex |only
SRPM-0.1-6/SRPM/inst/doc/combined.bib |only
SRPM-0.1-6/SRPM/inst/doc/jss.bst |only
SRPM-0.1-7/SRPM/DESCRIPTION | 14 +++++++-------
SRPM-0.1-7/SRPM/MD5 |only
SRPM-0.1-7/SRPM/R/zzz.R | 9 ---------
SRPM-0.1-7/SRPM/inst/doc/SRPM.pdf |binary
SRPM-0.1-7/SRPM/tests/reg-tests.Rout.save | 20 ++++++++++++--------
SRPM-0.1-7/SRPM/vignettes |only
9 files changed, 19 insertions(+), 24 deletions(-)
Title: A general-purpose package for dynamic report generation in R
Diff between knitr versions 0.6 dated 2012-06-11 and 0.6.3 dated 2012-06-22
Description: This package provides a general-purpose tool for dynamic
report generation in R, which can be used to deal with any type
of (plain text) files, including Sweave, HTML, Markdown and
reStructuredText. The patterns of code chunks and inline R
expressions can be customized. R code is evaluated as if it
were copied and pasted in an R terminal thanks to the evaluate
package (e.g. we do not need to explicitly print() plots from
ggplot2 or lattice). R code can be reformatted by the formatR
package so that long lines are automatically wrapped, with
indent and spaces being added, and comments being preserved. A
simple caching mechanism is provided to cache results from
computations for the first time and the computations will be
skipped the next time. Almost all common graphics devices,
including those in base R and add-on packages like Cairo,
cairoDevice and tikzDevice, are built-in with this package and
it is straightforward to switch between devices without writing
any special functions. The width and height as well as
alignment of plots in the output document can be specified in
chunk options (the size of plots for graphics devices is still
supported as usual). Multiple plots can be recorded in a single
code chunk, and it is also allowed to rearrange plots to the
end of a chunk or just keep the last plot. Warnings, messages
and errors are written in the output document by default (can
be turned off). Currently LaTeX, HTML, Markdown and reST are
supported, and other output formats can be supported by hook
functions. The large collection of hooks in this package makes
it possible for the user to control almost everything in the R
code input and output. Hooks can be used either to format the
output or to run a specified R code fragment before or after a
code chunk. The language in code chunks is not restricted to R
only (there is simple support to Python and Awk, etc). Many
features are borrowed or inspired by Sweave, cacheSweave,
pgfSweave, brew and decumar.
Author: Yihui Xie
Maintainer: Yihui Xie
DESCRIPTION | 23 +++++++++++++----------
MD5 | 40 ++++++++++++++++++++++------------------
NAMESPACE | 7 -------
NEWS | 38 ++++++++++++++++++++++++++++++++++++++
R/header.R | 3 ++-
R/highlight-00_sizes.R |only
R/highlight-css.R |only
R/highlight-renderer.R |only
R/highlight.R |only
R/hooks-latex.R | 5 ++++-
R/output.R | 21 ++++++++++++++-------
R/package.R | 2 --
R/parser.R | 4 +++-
R/spin.R | 16 ++++++++++++----
R/themes.R | 4 ++--
R/utils.R | 24 ++++++------------------
inst/doc/knitr-intro.pdf |binary
inst/misc/knitr-template.Rhtml | 4 ++--
inst/misc/knitr-template.Rmd | 1 -
inst/misc/knitr-template.Rnw | 2 +-
inst/themes/default.css | 8 ++++----
man/spin.Rd | 12 ++++++++++--
man/stitch.Rd | 6 +++++-
23 files changed, 138 insertions(+), 82 deletions(-)
Title: Weighted k-Nearest Neighbors
Diff between kknn versions 1.1-1 dated 2011-10-12 and 1.1-2 dated 2012-06-22
Description: Weighted k-Nearest Neighbors Classification, Regression
and Clustering
Author: Klaus Schliep & Klaus Hechenbichler
Maintainer: Klaus Schliep
DESCRIPTION | 12 ++++++------
MD5 | 14 +++++++-------
NAMESPACE | 2 +-
NEWS | 9 ++++++++-
R/kknn.R | 49 +++++++++++++++++++++++++++++++++----------------
R/specClust.R | 8 +++++---
man/specClust.Rd | 2 +-
src/dm.c | 9 +++++----
8 files changed, 66 insertions(+), 39 deletions(-)
Title: spatial and spatio-temporal geostatistical modelling, prediction
and simulation
Diff between gstat versions 1.0-11 dated 2012-06-22 and 1.0-12 dated 2012-06-22
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
DESCRIPTION | 8 ++---
MD5 | 74 +++++++++++++++++++++++++++--------------------------
inst/doc/gstat.pdf |binary
inst/doc/prs.pdf |binary
inst/doc/st.pdf |binary
src/chfactor.c | 3 +-
src/copy.c | 3 +-
src/data.c | 36 ++++++++++++-------------
src/err.c | 8 ++++-
src/fit.c | 6 ++--
src/getest.c | 2 -
src/hsehldr.c | 3 +-
src/init.c | 2 -
src/ivecop.c | 5 ++-
src/lex.c | 8 +++++
src/lufactor.c | 5 ++-
src/machine.c | 2 -
src/mapio.c | 6 +++-
src/matop.c | 2 +
src/meminfo.c | 2 +
src/memory.c | 35 ++++++++++++-------------
src/msim.c | 6 ++--
src/norm.c | 2 -
src/parse.c | 6 +++-
src/polygon.c | 2 -
src/predict.c | 9 ++++--
src/pxop.c | 2 +
src/qrfactor.c | 3 +-
src/s.c | 2 -
src/sem.c | 4 ++
src/solve.c | 3 +-
src/sparse.c | 19 +++++++------
src/sprow.c | 8 +++--
src/submat.c | 3 +-
src/tags |only
src/utils.c | 9 +++++-
src/vecop.c | 6 ++--
src/version.c | 8 ++---
src/x |only
39 files changed, 178 insertions(+), 124 deletions(-)
Title: A Collection of Database, Data Structure, Visualization, and
Utility Functions for R
Diff between caroline versions 0.7.2 dated 2012-05-09 and 0.7.4 dated 2012-06-22
Description: The caroline R library contains dozens of functions useful
for: database migration (dbWriteTable2), database style joins &
aggregation (nerge, groupBy & bestBy), data structure
conversion (nv, tab2df), legend table making (sstable &
leghead), plot annotation (labsegs & mvlabs), data
visualization (violins, pies & raPlot), character string
manipulation (m & pad), file I/O (write.delim), batch scripting
(cmdArgsToVariables) and many more. The package's greatest
contributions lie in the database style merge, aggregation and
interface functions as well as in it's extensive use and
propagation of row, column and vector names in most functions.
Author: David M. Schruth
Maintainer: David M. Schruth
DESCRIPTION | 10
MD5 | 13 -
R/io.R | 6
R/string.R | 2
R/violins.R | 659 +++++++++++++++++++++++++++++++-------------------------
man/read.tab.Rd | 3
man/stats.Rd |only
man/violins.Rd | 19 +
8 files changed, 406 insertions(+), 306 deletions(-)
Title: SciViews GUI API - Functions to interface with Komodo Edit/IDE
Diff between svKomodo versions 0.9-55 dated 2012-04-02 and 0.9-58 dated 2012-06-22
Description: Functions to manage the GUI client, like Komodo with the
SciViews-K extension
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
DESCRIPTION | 10 +++++-----
MD5 | 11 ++++++-----
NEWS | 21 +++++++++++++++++++++
R/koCmd.R | 17 +++++++++++------
R/svKomodo-internal.R | 41 +++++++++++++----------------------------
inst/NEWS.Rd |only
man/svKomodo-package.Rd | 4 ++--
7 files changed, 58 insertions(+), 46 deletions(-)
Title: Seamless R and C++ Integration
Diff between Rcpp versions 0.9.10 dated 2012-02-17 and 0.9.11 dated 2012-06-22
Description: The Rcpp package provides R functions as well as a C++
library which facilitate the integration of R and C++.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ... The "Rcpp-introduction" vignette
provides a good entry point to Rcpp.
Conversion from C++ to R and back is driven by the templates Rcpp::wrap
and Rcpp::as which are highly flexible and extensible, as
documented in the "Rcpp-extending" vignette.
Rcpp also provides Rcpp modules, a framework that allows exposing C++
functions and classes to the R level. The "Rcpp-modules"
vignette details the current set of features of Rcpp-modules.
Rcpp includes a concept called Rcpp sugar that brings many R functions
into C++. Sugar takes advantage of lazy evaluation and
expression templates to achieve great performance while
exposing a syntax that is much nicer to use than the equivalent
low-level loop code. The "Rcpp-sugar" vignette gives an
overview of the feature.
Several examples are included, and more than 770 unit tests in over 349
unit test functions provide additional usage examples.
An earlier version of Rcpp, containing what we now call the 'classic
Rcpp API' was written during 2005 and 2006 by Dominick Samperi.
This code has been factored out of Rcpp into the package
RcppClassic, and it is still available for code relying on the
older interface. New development should always use this Rcpp
package instead.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel and Romain Francois
ChangeLog | 113 +++
DESCRIPTION | 17
MD5 | 138 ++--
NAMESPACE | 3
R/Module.R | 96 +--
R/Rcpp.package.skeleton.R | 106 +--
R/RcppClass.R | 215 +++++--
R/exceptions.R | 46 -
R/loadModule.R |only
R/loadRcppModules.R | 67 +-
R/tools.R | 21
R/zzz.R | 3
TODO | 32 +
cleanup | 4
inst/NEWS | 24
inst/THANKS | 3
inst/doc/Rcpp-FAQ.pdf |binary
inst/doc/Rcpp-FAQ/Rcpp-FAQ.Rnw | 77 ++
inst/doc/Rcpp-extending.pdf |binary
inst/doc/Rcpp-extending/Rcpp-extending.Rnw | 2
inst/doc/Rcpp-introduction.pdf |binary
inst/doc/Rcpp-modules.pdf |binary
inst/doc/Rcpp-modules/Rcpp-modules.Rnw | 318 +++++++----
inst/doc/Rcpp-package.pdf |binary
inst/doc/Rcpp-package/Rcpp-package.Rnw | 17
inst/doc/Rcpp-quickref.pdf |binary
inst/doc/Rcpp-sugar.pdf |binary
inst/doc/Rcpp-sugar/Rcpp-sugar.Rnw | 4
inst/doc/Rcpp-unitTests.pdf |binary
inst/doc/unitTests-results/Rcpp-unitTests.html | 27
inst/doc/unitTests-results/Rcpp-unitTests.txt | 56 +
inst/include/Rcpp/DottedPair.h | 3
inst/include/Rcpp/Environment.h | 4
inst/include/Rcpp/Function.h | 4
inst/include/Rcpp/cache.h | 2
inst/include/Rcpp/config.h | 2
inst/include/Rcpp/iostream/Rostream.h | 4
inst/include/Rcpp/traits/named_object.h | 22
inst/include/Rcpp/vector/Vector.h | 17
inst/include/RcppCommon.h | 5
inst/skeleton/Num.cpp |only
inst/skeleton/rcpp_module.cpp | 72 +-
inst/skeleton/stdVector.cpp |only
inst/skeleton/zzz.R | 18
inst/unitTests/runit.Function.R | 6
inst/unitTests/runit.Module.client.package.R | 57 +-
inst/unitTests/runit.Vector.R | 625 ++++++++++++----------
inst/unitTests/testRcppClass |only
inst/unitTests/testRcppModule/src/Num.cpp | 43 +
inst/unitTests/testRcppModule/src/rcpp_module.cpp | 69 +-
inst/unitTests/testRcppModule/src/stdVector.cpp | 99 ++-
man/Module.Rd | 2
man/loadModule.Rd |only
man/setRcppClass.Rd | 137 ++--
src/Environment.cpp | 4
src/Evaluator.cpp | 31 -
src/Function.cpp | 4
src/Makevars.win | 84 +-
src/Module.cpp | 2
src/Rcpp_init.c | 4
src/cache.cpp | 88 +--
src/debugging.cpp | 8
src/exceptions.cpp | 3
63 files changed, 1758 insertions(+), 1050 deletions(-)
Title: Analysis of Mark-Recapture data
Diff between mra versions 2.10 dated 2012-01-05 and 2.13 dated 2012-06-22
Description: Analysis of mark-recapture data using covariates. Models:
CJS open population; Huggin's closed population. Link
functions: logit, sine, hazard. Model selection and model
averaging routines. Plot methods. Simulation routine. CJS
methods produce estimates of population size using the
Horvitz-Thompson estimator.
Author: Trent McDonald
Maintainer: Trent McDonald
DESCRIPTION | 15 ++-
MD5 | 22 +++--
NAMESPACE | 1
R/F.cr.model.avg.r | 199 ++++++++++++++++++++++++++++++++------------------
R/F.fit.table.r | 2
R/plot.cjs.R | 60 ---------------
R/plot.nhat.r |only
R/print.nhat.R | 64 +++++++++-------
R/zzz.R | 2
man/F.cr.model.avg.Rd | 95 ++++++++++++++---------
man/F.fit.table.Rd | 2
man/plot.nhat.Rd |only
man/print.nhat.Rd | 9 +-
13 files changed, 257 insertions(+), 214 deletions(-)
Title: Text Mining Distributed Corpus Plug-In
Diff between tm.plugin.dc versions 0.2-1 dated 2012-03-07 and 0.2-2 dated 2012-06-22
Description: A plug-in for the text mining framework tm to support text
mining in a distributed way. The package provides a convenient
interface for handling distributed corpus objects based on
distributed list objects.
Author: Ingo Feinerer [aut], Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl
DESCRIPTION | 14 +++++++-------
MD5 | 2 +-
2 files changed, 8 insertions(+), 8 deletions(-)
Title: iPACOSE, PACOSE and other methods for covariance selection
Diff between pacose versions 1.1 dated 2012-06-04 and 1.2 dated 2012-06-22
Description: Implementation of iPACOSE, PACOSE and of various methods
for the estimation of covariance/precision matrices under the
constraint that some partial correlation coefficients are equal
to zero.
Author: Vincent Guillemot, Andreas Bender
Maintainer: GUILLEMOT Vincent
DESCRIPTION | 10 +++++-----
MD5 | 20 ++++++++++----------
NAMESPACE | 2 +-
man/ipacose.Rd | 4 ++--
man/isComplete.Rd | 2 +-
man/isDecomposable.Rd | 2 +-
man/omegaMVUE.Rd | 4 ++--
man/omegaSURE.Rd | 4 ++--
man/pacose.adalasso.Rd | 4 ++--
man/pacose.pls.Rd | 4 ++--
man/pacose.ridge.Rd | 4 ++--
11 files changed, 30 insertions(+), 30 deletions(-)
Title: Hadoop InteractiVE
Diff between hive versions 0.1-14 dated 2012-03-06 and 0.1-15 dated 2012-06-22
Description: Hadoop InteractiVE, is an R extension facilitating
distributed computing via the MapReduce paradigm. It provides
an easy to use interface to Hadoop, the Hadoop Distributed File
System (HDFS), and Hadoop Streaming.
Author: Ingo Feinerer [aut], Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl
DESCRIPTION | 18 +++++++++---------
MD5 | 4 ++--
R/handler.R | 17 ++++++++++++-----
3 files changed, 23 insertions(+), 16 deletions(-)
Title: Person Parameter estimation
Diff between PP versions 0.1 dated 2011-09-10 and 0.2 dated 2012-06-22
Description: The PP package includes estimation of (MLE and WLE) person
parameters for the 3-PL model (three parameter logistic model)
and the GPCM (generalized partial credit model). The parameters
are estimated under the assumption that the other parameters
are known and fixed. The PP package also provides two functions
to estimate person parameters for the 1-PL (Rasch Model). The
package could be useful when items from an itempool/itembank
with known item parameters are administered to a new population
of testtakers and an ability estimation for every testtaker is
needed.
Author: Manuel Reif
Maintainer: Manuel Reif
DESCRIPTION | 10 -
MD5 | 34 ++-
R/PP_3PLmle.R | 9 -
R/PP_3PLwle.R | 12 -
R/PP_GPCMmle.R | 213 ++++++++++++------------
R/PP_GPCMwle.R | 454 ++++++++++++++++++++++++++---------------------------
R/PP_RMmle.R | 7
R/co_3PL.R |only
R/co_gpcm.R |only
man/PP-package.Rd | 11 -
man/PP_3PLmle.Rd | 9 -
man/PP_3PLwle.Rd | 15 -
man/PP_GPCMmle.Rd | 22 +-
man/PP_GPCMwle.Rd | 24 +-
man/PP_RMmle.Rd | 14 -
man/PP_RMwle.Rd | 17 -
man/summary.PPd.Rd | 22 --
man/summary.PPp.Rd | 22 --
man/summary.PPr.Rd | 26 ---
19 files changed, 434 insertions(+), 487 deletions(-)
Title: Various plotting functions
Diff between plotrix versions 3.4-1 dated 2012-05-19 and 3.4-2 dated 2012-06-22
Description: Lots of plots, various labeling, axis and color scaling
functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry
Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi,
Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl
Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa
Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos, Robby
Engelmann, Michael Hecker, Felix Steinbeck, Hans Borchers,
Henrik Singmann,Ted Toal
Maintainer: Jim Lemon
DESCRIPTION | 10 +++---
INDEX | 3 +
MD5 | 40 +++++++++++++-----------
NAMESPACE | 3 +
NEWS | 5 +++
R/addtable2plot.R | 26 ++++++++-------
R/arctext.R | 39 +++++++++++++----------
R/barlabels.R |only
R/barp.R | 24 +++++++-------
R/draw.arc.R | 80 ++++++++++++++++++++++++++++--------------------
R/draw.radial.line.R |only
R/radialtext.R |only
R/spread.labels.R | 48 +++++++++++++++++++---------
R/staircase.plot.R | 21 +++++++-----
R/vectorField.R | 4 +-
man/addtable2plot.Rd | 6 +++
man/arctext.Rd | 6 ++-
man/barlabels.Rd |only
man/barp.Rd | 24 ++++++++++----
man/draw.arc.Rd | 22 ++++++++-----
man/draw.radial.line.Rd |only
man/radialtext.Rd |only
man/staircase.plot.Rd | 11 +++++-
man/vectorField.Rd | 6 ++-
24 files changed, 236 insertions(+), 142 deletions(-)
Title: Analysis of dose-response curves
Diff between drc versions 2.2-9 dated 2012-06-10 and 2.3-0 dated 2012-06-22
Description: Analysis of one or multiple curves with focus on
concentration-response, dose-response and time-response curves
used, for example in biology, environmental sciences, medicine,
pharmacology, toxicology.
Author: Christian Ritz
Maintainer: Christian Ritz
drc-2.2-9/drc/R/drmEMeventtime.R |only
drc-2.2-9/drc/R/genLoewe2.R |only
drc-2.3-0/drc/DESCRIPTION | 8 ++++----
drc-2.3-0/drc/MD5 | 24 ++++++++++++------------
drc-2.3-0/drc/NEWS | 2 ++
drc-2.3-0/drc/R/drmEMeventtime.r |only
drc-2.3-0/drc/R/genLoewe2.r |only
drc-2.3-0/drc/R/vcov.drc.R | 11 +++++++++--
drc-2.3-0/drc/data/RScompetition.rda |binary
drc-2.3-0/drc/data/daphnids.rda |binary
drc-2.3-0/drc/data/earthworms.rda |binary
drc-2.3-0/drc/data/finney71.rda |binary
drc-2.3-0/drc/data/heartrate.rda |binary
drc-2.3-0/drc/data/leaflength.rda |binary
drc-2.3-0/drc/man/ursa.Rd | 3 +++
15 files changed, 30 insertions(+), 18 deletions(-)
Title: Implementation of a generic adaptive Monte Carlo Markov Chain
sampler
Diff between adaptMCMC versions 1.0.3 dated 2012-05-16 and 1.1 dated 2012-06-22
Description: This package provides an implementation of the generic
adaptive Monte Carlo Markov chain sampler proposed by Vihola
(2011).
Author: Andreas Scheidegger,
Maintainer: Andreas Scheidegger
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/Adaptive_MCMC.R | 11 +++++++----
man/MCMC.Rd | 7 +++++--
man/genericMCMC-package.Rd | 4 ++--
5 files changed, 22 insertions(+), 16 deletions(-)
Title: Soil Database Interface
Diff between soilDB versions 0.3-3 dated 2012-01-16 and 0.6-2 dated 2012-06-22
Description: A collection of functions for reading data from USDA-NCSS
soil databases.
Author: D.E. Beaudette and J.M. Skovlin
Maintainer: D.E. Beaudette
DESCRIPTION | 15 ++--
MD5 | 76 +++++++++++---------
NAMESPACE | 20 +++++
NEWS | 27 ++++++-
R/MUKEYS_by_ll_bbox.R | 2
R/SDA_query.R | 16 ++--
R/fetchNASIS.R |only
R/fetchPedonPC.R | 18 +++-
R/getHzErrorsNASIS.R |only
R/getHzErrorsPedonPC.R | 4 -
R/get_colors_from_NASIS_db.R | 9 +-
R/get_colors_from_pedon_db.R | 4 -
R/get_extended_data_from_NASIS_db.R | 121 +++++++++++++++++++++++++--------
R/get_extended_data_from_pedon_db.R | 117 +++++++++++++++++++++++--------
R/get_hz_data_from_NASIS_db.R | 45 ++++++++----
R/get_hz_data_from_pedon_db.R | 51 ++++++++++---
R/get_site_data_from_NASIS_db.R | 40 +++++++---
R/get_site_data_from_pedon_db.R | 32 +++++---
R/get_veg_from_AK_Site.R | 6 +
R/mapunit_geom_by_ll_bbox.R | 8 +-
R/nasis_component_data.R |only
R/utils.R |only
TODO |only
data |only
man/SDA_query.Rd | 20 ++++-
man/fetchNASIS.Rd |only
man/fetchPedonPC.Rd | 34 +++++++--
man/get_colors_from_NASIS_db.Rd | 12 ---
man/get_colors_from_pedon_db.Rd | 5 -
man/get_extended_data_from_NASIS_db.Rd | 5 -
man/get_extended_data_from_pedon_db.Rd | 6 -
man/get_hz_data_from_NASIS_db.Rd | 10 --
man/get_hz_data_from_pedon_db.Rd | 4 -
man/get_site_data_from_NASIS_db.Rd | 14 ---
man/get_site_data_from_pedon_db.Rd | 9 --
man/get_veg_from_AK_Site.Rd | 6 -
man/get_veg_from_MT_veg_db.Rd | 4 -
man/get_veg_other_from_MT_veg_db.Rd | 4 -
man/get_veg_species_from_MT_veg_db.Rd | 4 -
man/loafercreek.Rd |only
man/mapunit_geom_by_ll_bbox.Rd | 1
man/soilDB-package.Rd | 69 ------------------
42 files changed, 495 insertions(+), 323 deletions(-)
Title: spatial and spatio-temporal geostatistical modelling, prediction
and simulation
Diff between gstat versions 1.0-10 dated 2011-11-16 and 1.0-11 dated 2012-06-22
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
gstat-1.0-10/gstat/src/matrixio.c |only
gstat-1.0-10/gstat/src/memstat.c |only
gstat-1.0-10/gstat/src/otherio.c |only
gstat-1.0-10/gstat/src/plot.c |only
gstat-1.0-10/gstat/src/report.c |only
gstat-1.0-10/gstat/src/sparseio.c |only
gstat-1.0-10/gstat/src/spbkp.c |only
gstat-1.0-10/gstat/src/spchfctr.c |only
gstat-1.0-10/gstat/src/splufctr.c |only
gstat-1.0-10/gstat/src/spswap.c |only
gstat-1.0-11/gstat/DESCRIPTION | 20 +-
gstat-1.0-11/gstat/MD5 | 107 ++++++---------
gstat-1.0-11/gstat/R/krige0.R | 11 -
gstat-1.0-11/gstat/R/plot.variogramCloud.R | 7
gstat-1.0-11/gstat/R/show.vgms.R | 46 ++++--
gstat-1.0-11/gstat/R/vgm.R | 13 +
gstat-1.0-11/gstat/data/coalash.rda |binary
gstat-1.0-11/gstat/data/fulmar.rda |binary
gstat-1.0-11/gstat/data/jura.rda |binary
gstat-1.0-11/gstat/data/meuse.all.rda |binary
gstat-1.0-11/gstat/data/meuse.alt.rda |binary
gstat-1.0-11/gstat/data/ncp.grid.rda |binary
gstat-1.0-11/gstat/data/oxford.rda |binary
gstat-1.0-11/gstat/data/pcb.rda |binary
gstat-1.0-11/gstat/data/sic2004.rda |binary
gstat-1.0-11/gstat/data/sic97.rda |binary
gstat-1.0-11/gstat/data/tull.rda |binary
gstat-1.0-11/gstat/data/vv.rda |binary
gstat-1.0-11/gstat/data/walker.rda |binary
gstat-1.0-11/gstat/data/wind.rda |binary
gstat-1.0-11/gstat/demo/00Index | 1
gstat-1.0-11/gstat/demo/a2p.R |only
gstat-1.0-11/gstat/inst/ChangeLog | 191 +++++++++++++++++++++++++++
gstat-1.0-11/gstat/inst/doc/gstat.pdf |binary
gstat-1.0-11/gstat/inst/doc/prs.pdf |binary
gstat-1.0-11/gstat/inst/doc/st.pdf |binary
gstat-1.0-11/gstat/man/jura.Rd | 37 +++--
gstat-1.0-11/gstat/man/oxford.Rd | 6
gstat-1.0-11/gstat/man/show.vgms.Rd | 12 -
gstat-1.0-11/gstat/man/variogram.Rd | 8 -
gstat-1.0-11/gstat/man/vgm.Rd | 7
gstat-1.0-11/gstat/src/s.c | 28 +--
gstat-1.0-11/gstat/src/version.h | 4
gstat-1.0-11/gstat/tests/blockkr.Rout.save | 4
gstat-1.0-11/gstat/tests/covtable.Rout.save | 4
gstat-1.0-11/gstat/tests/cv.Rout.save | 21 ++
gstat-1.0-11/gstat/tests/cv3d.Rout.save | 25 +--
gstat-1.0-11/gstat/tests/fit.Rout.save | 4
gstat-1.0-11/gstat/tests/krige0.Rout.save | 4
gstat-1.0-11/gstat/tests/line.Rout.save | 4
gstat-1.0-11/gstat/tests/merge.Rout.save | 4
gstat-1.0-11/gstat/tests/na.action.Rout.save | 4
gstat-1.0-11/gstat/tests/rings.Rout.save | 4
gstat-1.0-11/gstat/tests/sim.Rout.save | 4
gstat-1.0-11/gstat/tests/unproj.R | 6
gstat-1.0-11/gstat/tests/unproj.Rout.save | 19 +-
gstat-1.0-11/gstat/tests/variogram.Rout.save | 4
gstat-1.0-11/gstat/tests/vdist.Rout.save | 4
gstat-1.0-11/gstat/tests/windst.R | 1
gstat-1.0-11/gstat/tests/windst.Rout.save | 29 +++-
60 files changed, 460 insertions(+), 183 deletions(-)
Title: Format R Code Automatically
Diff between formatR versions 0.4 dated 2012-04-02 and 0.5 dated 2012-06-22
Description: This package provides a function tidy.source() and
optionally a GUI (by gWidgets and preferably gWidgetsRGtk2) to
format R source code. Spaces and indent will be added to the
code automatically, and comments will be preserved under
certain conditions, so that R code will be more human-readable
and tidy.
Author: Yihui Xie
Maintainer: Yihui Xie
DESCRIPTION | 11 +++-----
MD5 | 23 +++++++++--------
NAMESPACE | 1
NEWS | 27 ++++++++++++++++++++
R/eval.R | 6 ++--
R/tidy.R | 68 +++------------------------------------------------
R/utils.R |only
inst/doc/formatR.Rnw | 35 +++++++++++++-------------
inst/doc/formatR.bib | 18 ++++++-------
inst/doc/formatR.lyx | 42 +++++++++++++++----------------
inst/doc/formatR.pdf |binary
man/tidy.eval.Rd | 6 ++--
man/unmask.source.Rd | 5 ---
13 files changed, 103 insertions(+), 139 deletions(-)