Fri, 22 Jun 2012

Package tnet updated to version 3.0.6 with previous version 3.0.5 dated 2011-05-04

Title: tnet: Software for Analysis of Weighted, Two-mode, and Longitudinal networks
Description: R package to analyse weighted, two-mode, and longitudinal networks.
Author: Tore Opsahl
Maintainer: Tore Opsahl

Diff between tnet versions 3.0.5 dated 2011-05-04 and 3.0.6 dated 2012-06-22

 tnet-3.0.5/tnet/R/zzz.r                               |only
 tnet-3.0.5/tnet/data/Cross.Parker.Consulting.RData    |only
 tnet-3.0.5/tnet/data/Cross.Parker.Manufacturing.RData |only
 tnet-3.0.5/tnet/data/Davis.Southern.women.RData       |only
 tnet-3.0.5/tnet/data/Freemans.EIES.RData              |only
 tnet-3.0.5/tnet/data/Newman.Condmat.95.99.RData       |only
 tnet-3.0.5/tnet/data/OnlineSocialNetwork.n1899.RData  |only
 tnet-3.0.5/tnet/data/USairport.n500.RData             |only
 tnet-3.0.5/tnet/data/celegans.n306.RData              |only
 tnet-3.0.6/tnet/ChangeLog                             |    2 +-
 tnet-3.0.6/tnet/DESCRIPTION                           |   10 +++++-----
 tnet-3.0.6/tnet/MD5                                   |only
 tnet-3.0.6/tnet/NAMESPACE                             |only
 tnet-3.0.6/tnet/R/betweenness_w.R                     |    6 +++---
 tnet-3.0.6/tnet/R/dichotomise.R                       |    4 ++--
 tnet-3.0.6/tnet/R/distance_w.R                        |   16 ++++++++--------
 tnet-3.0.6/tnet/R/package.R                           |only
 tnet-3.0.6/tnet/R/reinforcement_tm.R                  |only
 tnet-3.0.6/tnet/R/rg_reshuffling_w.R                  |    8 ++++----
 tnet-3.0.6/tnet/R/tnet_igraph.R                       |    8 ++++----
 tnet-3.0.6/tnet/R/weighted_richclub_w.R               |    2 +-
 tnet-3.0.6/tnet/data/datalist                         |only
 tnet-3.0.6/tnet/data/tnet.RData                       |only
 tnet-3.0.6/tnet/inst/CITATION                         |    2 +-
 tnet-3.0.6/tnet/man/Cross.Parker.Consulting.Rd        |    2 +-
 tnet-3.0.6/tnet/man/Cross.Parker.Manufacturing.Rd     |    2 +-
 tnet-3.0.6/tnet/man/Davis.Southern.women.Rd           |    2 +-
 tnet-3.0.6/tnet/man/Freemans.EIES.Rd                  |    2 +-
 tnet-3.0.6/tnet/man/Newman.Condmat.95.99.Rd           |    2 +-
 tnet-3.0.6/tnet/man/OnlineSocialNetwork.n1899.Rd      |    8 +++-----
 tnet-3.0.6/tnet/man/USairport.n500.net.Rd             |    2 +-
 tnet-3.0.6/tnet/man/celegans.n306.Rd                  |    2 +-
 tnet-3.0.6/tnet/man/reinforcement_tm.Rd               |only
 tnet-3.0.6/tnet/man/rg_reshuffling_tm.Rd              |    4 ++--
 tnet-3.0.6/tnet/man/rg_w.Rd                           |    2 +-
 tnet-3.0.6/tnet/man/tnet-package.Rd                   |    5 ++---
 tnet-3.0.6/tnet/man/weighted_richclub_tm.Rd           |    2 +-
 37 files changed, 45 insertions(+), 48 deletions(-)

More information about tnet at CRAN
Permanent link

Package Amelia updated to version 1.6.3 with previous version 1.6.1 dated 2012-03-29

Title: Amelia II: A Program for Missing Data
Description: Amelia II "multiply imputes" missing data in a single cross-section (such as a survey), from a time series (like variables collected for each year in a country), or from a time-series-cross-sectional data set (such as collected by years for each of several countries). Amelia II implements our bootstrapping-based algorithm that gives essentially the same answers as the standard IP or EMis approaches, is usually considerably faster than existing approaches and can handle many more variables. Unlike Amelia I and other statistically rigorous imputation software, it virtually never crashes (but please let us know if you find to the contrary!). The program also generalizes existing approaches by allowing for trends in time series across observations within a cross-sectional unit, as well as priors that allow experts to incorporate beliefs they have about the values of missing cells in their data. Amelia II also includes useful diagnostics of the fit of multiple imputation models. The program works from the R command line or via a graphical user interface that does not require users to know R.
Author: James Honaker , Gary King , Matthew Blackwell
Maintainer: Matthew Blackwell

Diff between Amelia versions 1.6.1 dated 2012-03-29 and 1.6.3 dated 2012-06-22

 DESCRIPTION         |    8 ++++----
 MD5                 |   10 +++++-----
 R/amcheck.r         |    9 +++++----
 R/mo.R              |   14 ++++++++------
 inst/doc/amelia.Rnw |    2 +-
 inst/doc/amelia.pdf |binary
 6 files changed, 23 insertions(+), 20 deletions(-)

More information about Amelia at CRAN
Permanent link

Package verification updated to version 1.33 with previous version 1.32 dated 2012-04-13

Title: Forecast verification utilities.
Description: This package contains utilities for verification of discrete,continuous, probabilistic forecasts and forecast expressed as parametric distributions.
Author: NCAR - Research Application Program
Maintainer: Eric Gilleland

Diff between verification versions 1.32 dated 2012-04-13 and 1.33 dated 2012-06-22

 DESCRIPTION               |    6 -
 MD5                       |   16 ++--
 R/summary.bin.bin.R       |   12 ++-
 R/table.stats.R           |    8 +-
 R/verify.r                |  176 +++++++++++++++++++++++-----------------------
 inst/doc/verification.pdf |binary
 man/pop.Rd                |    2 
 man/rps.Rd                |    2 
 man/verify.Rd             |   19 +++-
 9 files changed, 130 insertions(+), 111 deletions(-)

More information about verification at CRAN
Permanent link

New package TukeyC with initial version 1.0-6
Package: TukeyC
Type: Package
Title: Convencional Tukey Test
Version: 1.0-6
Date: 2012-06-22
Author: Jose Claudio Faria, Enio Jelihovschi and Ivan Bezerra Allaman
Maintainer: Jose Claudio Faria
Depends: R (>= 2.6.0), base
Description: Perform the conventional Tukey test from aov and aov.list objects
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-06-22 15:08:44 UTC; jcfaria
Repository: CRAN
Date/Publication: 2012-06-22 17:53:36

More information about TukeyC at CRAN
Permanent link

Package gpclib updated to version 1.5-3 with previous version 1.5-1 dated 2010-02-03

Title: General Polygon Clipping Library for R
Description: General polygon clipping routines for R based on Alan Murta's C library
Author: Roger D. Peng with contributions from Duncan Murdoch and Barry Rowlingson; GPC library by Alan Murta
Maintainer: Roger D. Peng

Diff between gpclib versions 1.5-1 dated 2010-02-03 and 1.5-3 dated 2012-06-22

 DESCRIPTION               |   10 +++++-----
 MD5                       |only
 R/zzz.R                   |    7 +------
 src/gpc.c                 |    9 ++++-----
 tests/bug1.R              |only
 tests/bug1.Rout.save      |only
 tests/bug1_data.RData     |only
 tests/reg-tests.Rout.save |    7 ++++---
 8 files changed, 14 insertions(+), 19 deletions(-)

More information about gpclib at CRAN
Permanent link

Package SRPM updated to version 0.1-7 with previous version 0.1-6 dated 2010-04-12

Title: Shared Reproducibility Package Management
Description: A package development and management system for distributed reproducible research
Author: Roger D. Peng
Maintainer: Roger D. Peng

Diff between SRPM versions 0.1-6 dated 2010-04-12 and 0.1-7 dated 2012-06-22

 SRPM-0.1-6/SRPM/inst/doc/SRPM.tex         |only
 SRPM-0.1-6/SRPM/inst/doc/combined.bib     |only
 SRPM-0.1-6/SRPM/inst/doc/jss.bst          |only
 SRPM-0.1-7/SRPM/DESCRIPTION               |   14 +++++++-------
 SRPM-0.1-7/SRPM/MD5                       |only
 SRPM-0.1-7/SRPM/R/zzz.R                   |    9 ---------
 SRPM-0.1-7/SRPM/inst/doc/SRPM.pdf         |binary
 SRPM-0.1-7/SRPM/tests/reg-tests.Rout.save |   20 ++++++++++++--------
 SRPM-0.1-7/SRPM/vignettes                 |only
 9 files changed, 19 insertions(+), 24 deletions(-)

More information about SRPM at CRAN
Permanent link

Package knitr updated to version 0.6.3 with previous version 0.6 dated 2012-06-11

Title: A general-purpose package for dynamic report generation in R
Description: This package provides a general-purpose tool for dynamic report generation in R, which can be used to deal with any type of (plain text) files, including Sweave, HTML, Markdown and reStructuredText. The patterns of code chunks and inline R expressions can be customized. R code is evaluated as if it were copied and pasted in an R terminal thanks to the evaluate package (e.g. we do not need to explicitly print() plots from ggplot2 or lattice). R code can be reformatted by the formatR package so that long lines are automatically wrapped, with indent and spaces being added, and comments being preserved. A simple caching mechanism is provided to cache results from computations for the first time and the computations will be skipped the next time. Almost all common graphics devices, including those in base R and add-on packages like Cairo, cairoDevice and tikzDevice, are built-in with this package and it is straightforward to switch between devices without writing any special functions. The width and height as well as alignment of plots in the output document can be specified in chunk options (the size of plots for graphics devices is still supported as usual). Multiple plots can be recorded in a single code chunk, and it is also allowed to rearrange plots to the end of a chunk or just keep the last plot. Warnings, messages and errors are written in the output document by default (can be turned off). Currently LaTeX, HTML, Markdown and reST are supported, and other output formats can be supported by hook functions. The large collection of hooks in this package makes it possible for the user to control almost everything in the R code input and output. Hooks can be used either to format the output or to run a specified R code fragment before or after a code chunk. The language in code chunks is not restricted to R only (there is simple support to Python and Awk, etc). Many features are borrowed or inspired by Sweave, cacheSweave, pgfSweave, brew and decumar.
Author: Yihui Xie
Maintainer: Yihui Xie

Diff between knitr versions 0.6 dated 2012-06-11 and 0.6.3 dated 2012-06-22

 DESCRIPTION                    |   23 +++++++++++++----------
 MD5                            |   40 ++++++++++++++++++++++------------------
 NAMESPACE                      |    7 -------
 NEWS                           |   38 ++++++++++++++++++++++++++++++++++++++
 R/header.R                     |    3 ++-
 R/highlight-00_sizes.R         |only
 R/highlight-css.R              |only
 R/highlight-renderer.R         |only
 R/highlight.R                  |only
 R/hooks-latex.R                |    5 ++++-
 R/output.R                     |   21 ++++++++++++++-------
 R/package.R                    |    2 --
 R/parser.R                     |    4 +++-
 R/spin.R                       |   16 ++++++++++++----
 R/themes.R                     |    4 ++--
 R/utils.R                      |   24 ++++++------------------
 inst/doc/knitr-intro.pdf       |binary
 inst/misc/knitr-template.Rhtml |    4 ++--
 inst/misc/knitr-template.Rmd   |    1 -
 inst/misc/knitr-template.Rnw   |    2 +-
 inst/themes/default.css        |    8 ++++----
 man/spin.Rd                    |   12 ++++++++++--
 man/stitch.Rd                  |    6 +++++-
 23 files changed, 138 insertions(+), 82 deletions(-)

More information about knitr at CRAN
Permanent link

Package kknn updated to version 1.1-2 with previous version 1.1-1 dated 2011-10-12

Title: Weighted k-Nearest Neighbors
Description: Weighted k-Nearest Neighbors Classification, Regression and Clustering
Author: Klaus Schliep & Klaus Hechenbichler
Maintainer: Klaus Schliep

Diff between kknn versions 1.1-1 dated 2011-10-12 and 1.1-2 dated 2012-06-22

 DESCRIPTION      |   12 ++++++------
 MD5              |   14 +++++++-------
 NAMESPACE        |    2 +-
 NEWS             |    9 ++++++++-
 R/kknn.R         |   49 +++++++++++++++++++++++++++++++++----------------
 R/specClust.R    |    8 +++++---
 man/specClust.Rd |    2 +-
 src/dm.c         |    9 +++++----
 8 files changed, 66 insertions(+), 39 deletions(-)

More information about kknn at CRAN
Permanent link

Package gstat updated to version 1.0-12 with previous version 1.0-11 dated 2012-06-22

Title: spatial and spatio-temporal geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point or block (co)kriging, sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.
Author: Edzer Pebesma and others
Maintainer: Edzer Pebesma

Diff between gstat versions 1.0-11 dated 2012-06-22 and 1.0-12 dated 2012-06-22

 DESCRIPTION        |    8 ++---
 MD5                |   74 +++++++++++++++++++++++++++--------------------------
 inst/doc/gstat.pdf |binary
 inst/doc/prs.pdf   |binary
 inst/doc/st.pdf    |binary
 src/chfactor.c     |    3 +-
 src/copy.c         |    3 +-
 src/data.c         |   36 ++++++++++++-------------
 src/err.c          |    8 ++++-
 src/fit.c          |    6 ++--
 src/getest.c       |    2 -
 src/hsehldr.c      |    3 +-
 src/init.c         |    2 -
 src/ivecop.c       |    5 ++-
 src/lex.c          |    8 +++++
 src/lufactor.c     |    5 ++-
 src/machine.c      |    2 -
 src/mapio.c        |    6 +++-
 src/matop.c        |    2 +
 src/meminfo.c      |    2 +
 src/memory.c       |   35 ++++++++++++-------------
 src/msim.c         |    6 ++--
 src/norm.c         |    2 -
 src/parse.c        |    6 +++-
 src/polygon.c      |    2 -
 src/predict.c      |    9 ++++--
 src/pxop.c         |    2 +
 src/qrfactor.c     |    3 +-
 src/s.c            |    2 -
 src/sem.c          |    4 ++
 src/solve.c        |    3 +-
 src/sparse.c       |   19 +++++++------
 src/sprow.c        |    8 +++--
 src/submat.c       |    3 +-
 src/tags           |only
 src/utils.c        |    9 +++++-
 src/vecop.c        |    6 ++--
 src/version.c      |    8 ++---
 src/x              |only
 39 files changed, 178 insertions(+), 124 deletions(-)

More information about gstat at CRAN
Permanent link

Package caroline updated to version 0.7.4 with previous version 0.7.2 dated 2012-05-09

Title: A Collection of Database, Data Structure, Visualization, and Utility Functions for R
Description: The caroline R library contains dozens of functions useful for: database migration (dbWriteTable2), database style joins & aggregation (nerge, groupBy & bestBy), data structure conversion (nv, tab2df), legend table making (sstable & leghead), plot annotation (labsegs & mvlabs), data visualization (violins, pies & raPlot), character string manipulation (m & pad), file I/O (write.delim), batch scripting (cmdArgsToVariables) and many more. The package's greatest contributions lie in the database style merge, aggregation and interface functions as well as in it's extensive use and propagation of row, column and vector names in most functions.
Author: David M. Schruth
Maintainer: David M. Schruth

Diff between caroline versions 0.7.2 dated 2012-05-09 and 0.7.4 dated 2012-06-22

 DESCRIPTION     |   10 
 MD5             |   13 -
 R/io.R          |    6 
 R/string.R      |    2 
 R/violins.R     |  659 +++++++++++++++++++++++++++++++-------------------------
 man/read.tab.Rd |    3 
 man/stats.Rd    |only
 man/violins.Rd  |   19 +
 8 files changed, 406 insertions(+), 306 deletions(-)

More information about caroline at CRAN
Permanent link

New package DnE with initial version 1.0
Package: DnE
Type: Package
Title: DnE(Distribution and Equation)
Version: 1.0
Date: 2012-05-14
Author: Junyao Chen, Cuiyi He, Yuanrui Wu, Mengqing Sun
Maintainer: Junyao Chen
Description: This package is made for solving cubic and quartic equations and analyze the distribution of the data that R user provide. The package contains function Cubic and Quart for equations and all kinds of functions for distributions analysis which have format as is.xxdistrbution and if you don't know which distribution to judge, use function is.dt.
License: GPL (>= 2)
Packaged: 2012-06-07 15:21:06 UTC; BOXIANWEI
Repository: CRAN
Date/Publication: 2012-06-22 17:39:37

More information about DnE at CRAN
Permanent link

Package svKomodo updated to version 0.9-58 with previous version 0.9-55 dated 2012-04-02

Title: SciViews GUI API - Functions to interface with Komodo Edit/IDE
Description: Functions to manage the GUI client, like Komodo with the SciViews-K extension
Author: Philippe Grosjean
Maintainer: Philippe Grosjean

Diff between svKomodo versions 0.9-55 dated 2012-04-02 and 0.9-58 dated 2012-06-22

 DESCRIPTION             |   10 +++++-----
 MD5                     |   11 ++++++-----
 NEWS                    |   21 +++++++++++++++++++++
 R/koCmd.R               |   17 +++++++++++------
 R/svKomodo-internal.R   |   41 +++++++++++++----------------------------
 inst/NEWS.Rd            |only
 man/svKomodo-package.Rd |    4 ++--
 7 files changed, 58 insertions(+), 46 deletions(-)

More information about svKomodo at CRAN
Permanent link

Package Rcpp updated to version 0.9.11 with previous version 0.9.10 dated 2012-02-17

Title: Seamless R and C++ Integration
Description: The Rcpp package provides R functions as well as a C++ library which facilitate the integration of R and C++. R data types (SEXP) are matched to C++ objects in a class hierarchy. All R types are supported (vectors, functions, environment, etc ...) and each type is mapped to a dedicated class. For example, numeric vectors are represented as instances of the Rcpp::NumericVector class, environments are represented as instances of Rcpp::Environment, functions are represented as Rcpp::Function, etc ... The "Rcpp-introduction" vignette provides a good entry point to Rcpp. Conversion from C++ to R and back is driven by the templates Rcpp::wrap and Rcpp::as which are highly flexible and extensible, as documented in the "Rcpp-extending" vignette. Rcpp also provides Rcpp modules, a framework that allows exposing C++ functions and classes to the R level. The "Rcpp-modules" vignette details the current set of features of Rcpp-modules. Rcpp includes a concept called Rcpp sugar that brings many R functions into C++. Sugar takes advantage of lazy evaluation and expression templates to achieve great performance while exposing a syntax that is much nicer to use than the equivalent low-level loop code. The "Rcpp-sugar" vignette gives an overview of the feature. Several examples are included, and more than 770 unit tests in over 349 unit test functions provide additional usage examples. An earlier version of Rcpp, containing what we now call the 'classic Rcpp API' was written during 2005 and 2006 by Dominick Samperi. This code has been factored out of Rcpp into the package RcppClassic, and it is still available for code relying on the older interface. New development should always use this Rcpp package instead.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel and Romain Francois

Diff between Rcpp versions 0.9.10 dated 2012-02-17 and 0.9.11 dated 2012-06-22

 ChangeLog                                         |  113 +++
 DESCRIPTION                                       |   17 
 MD5                                               |  138 ++--
 NAMESPACE                                         |    3 
 R/Module.R                                        |   96 +--
 R/Rcpp.package.skeleton.R                         |  106 +--
 R/RcppClass.R                                     |  215 +++++--
 R/exceptions.R                                    |   46 -
 R/loadModule.R                                    |only
 R/loadRcppModules.R                               |   67 +-
 R/tools.R                                         |   21 
 R/zzz.R                                           |    3 
 TODO                                              |   32 +
 cleanup                                           |    4 
 inst/NEWS                                         |   24 
 inst/THANKS                                       |    3 
 inst/doc/Rcpp-FAQ.pdf                             |binary
 inst/doc/Rcpp-FAQ/Rcpp-FAQ.Rnw                    |   77 ++
 inst/doc/Rcpp-extending.pdf                       |binary
 inst/doc/Rcpp-extending/Rcpp-extending.Rnw        |    2 
 inst/doc/Rcpp-introduction.pdf                    |binary
 inst/doc/Rcpp-modules.pdf                         |binary
 inst/doc/Rcpp-modules/Rcpp-modules.Rnw            |  318 +++++++----
 inst/doc/Rcpp-package.pdf                         |binary
 inst/doc/Rcpp-package/Rcpp-package.Rnw            |   17 
 inst/doc/Rcpp-quickref.pdf                        |binary
 inst/doc/Rcpp-sugar.pdf                           |binary
 inst/doc/Rcpp-sugar/Rcpp-sugar.Rnw                |    4 
 inst/doc/Rcpp-unitTests.pdf                       |binary
 inst/doc/unitTests-results/Rcpp-unitTests.html    |   27 
 inst/doc/unitTests-results/Rcpp-unitTests.txt     |   56 +
 inst/include/Rcpp/DottedPair.h                    |    3 
 inst/include/Rcpp/Environment.h                   |    4 
 inst/include/Rcpp/Function.h                      |    4 
 inst/include/Rcpp/cache.h                         |    2 
 inst/include/Rcpp/config.h                        |    2 
 inst/include/Rcpp/iostream/Rostream.h             |    4 
 inst/include/Rcpp/traits/named_object.h           |   22 
 inst/include/Rcpp/vector/Vector.h                 |   17 
 inst/include/RcppCommon.h                         |    5 
 inst/skeleton/Num.cpp                             |only
 inst/skeleton/rcpp_module.cpp                     |   72 +-
 inst/skeleton/stdVector.cpp                       |only
 inst/skeleton/zzz.R                               |   18 
 inst/unitTests/runit.Function.R                   |    6 
 inst/unitTests/runit.Module.client.package.R      |   57 +-
 inst/unitTests/runit.Vector.R                     |  625 ++++++++++++----------
 inst/unitTests/testRcppClass                      |only
 inst/unitTests/testRcppModule/src/Num.cpp         |   43 +
 inst/unitTests/testRcppModule/src/rcpp_module.cpp |   69 +-
 inst/unitTests/testRcppModule/src/stdVector.cpp   |   99 ++-
 man/Module.Rd                                     |    2 
 man/loadModule.Rd                                 |only
 man/setRcppClass.Rd                               |  137 ++--
 src/Environment.cpp                               |    4 
 src/Evaluator.cpp                                 |   31 -
 src/Function.cpp                                  |    4 
 src/Makevars.win                                  |   84 +-
 src/Module.cpp                                    |    2 
 src/Rcpp_init.c                                   |    4 
 src/cache.cpp                                     |   88 +--
 src/debugging.cpp                                 |    8 
 src/exceptions.cpp                                |    3 
 63 files changed, 1758 insertions(+), 1050 deletions(-)

More information about Rcpp at CRAN
Permanent link

Package mra updated to version 2.13 with previous version 2.10 dated 2012-01-05

Title: Analysis of Mark-Recapture data
Description: Analysis of mark-recapture data using covariates. Models: CJS open population; Huggin's closed population. Link functions: logit, sine, hazard. Model selection and model averaging routines. Plot methods. Simulation routine. CJS methods produce estimates of population size using the Horvitz-Thompson estimator.
Author: Trent McDonald
Maintainer: Trent McDonald

Diff between mra versions 2.10 dated 2012-01-05 and 2.13 dated 2012-06-22

 DESCRIPTION           |   15 ++-
 MD5                   |   22 +++--
 NAMESPACE             |    1 
 R/F.cr.model.avg.r    |  199 ++++++++++++++++++++++++++++++++------------------
 R/F.fit.table.r       |    2 
 R/plot.cjs.R          |   60 ---------------
 R/plot.nhat.r         |only
 R/print.nhat.R        |   64 +++++++++-------
 R/zzz.R               |    2 
 man/F.cr.model.avg.Rd |   95 ++++++++++++++---------
 man/F.fit.table.Rd    |    2 
 man/plot.nhat.Rd      |only
 man/print.nhat.Rd     |    9 +-
 13 files changed, 257 insertions(+), 214 deletions(-)

More information about mra at CRAN
Permanent link

Package tm.plugin.dc updated to version 0.2-2 with previous version 0.2-1 dated 2012-03-07

Title: Text Mining Distributed Corpus Plug-In
Description: A plug-in for the text mining framework tm to support text mining in a distributed way. The package provides a convenient interface for handling distributed corpus objects based on distributed list objects.
Author: Ingo Feinerer [aut], Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl

Diff between tm.plugin.dc versions 0.2-1 dated 2012-03-07 and 0.2-2 dated 2012-06-22

 DESCRIPTION |   14 +++++++-------
 MD5         |    2 +-
 2 files changed, 8 insertions(+), 8 deletions(-)

More information about tm.plugin.dc at CRAN
Permanent link

Package pacose updated to version 1.2 with previous version 1.1 dated 2012-06-04

Title: iPACOSE, PACOSE and other methods for covariance selection
Description: Implementation of iPACOSE, PACOSE and of various methods for the estimation of covariance/precision matrices under the constraint that some partial correlation coefficients are equal to zero.
Author: Vincent Guillemot, Andreas Bender
Maintainer: GUILLEMOT Vincent

Diff between pacose versions 1.1 dated 2012-06-04 and 1.2 dated 2012-06-22

 DESCRIPTION            |   10 +++++-----
 MD5                    |   20 ++++++++++----------
 NAMESPACE              |    2 +-
 man/ipacose.Rd         |    4 ++--
 man/isComplete.Rd      |    2 +-
 man/isDecomposable.Rd  |    2 +-
 man/omegaMVUE.Rd       |    4 ++--
 man/omegaSURE.Rd       |    4 ++--
 man/pacose.adalasso.Rd |    4 ++--
 man/pacose.pls.Rd      |    4 ++--
 man/pacose.ridge.Rd    |    4 ++--
 11 files changed, 30 insertions(+), 30 deletions(-)

More information about pacose at CRAN
Permanent link

New package parser with initial version 0.0-15
Package: parser
Type: Package
Title: Detailed R source code parser
Version: 0.0-15
Date: 2012-06-23
Author: Romain Francois
Maintainer: ORPHANED
Description: detailed source code parser, based on the standard R parser but organizing the information differently
License: GPL (>= 2.0)
Depends: R (>= 2.12.0), Rcpp (>= 0.9.7)
LinkingTo: Rcpp
LazyData: yes
RcppModules: parser_module
Packaged: 2012-06-22 11:53:13 UTC; ripley
X-CRAN-Comment: Orphaned on 2012-06-18 as the orginal maintainer, Romain Francois , is unrespsonsive.
Repository: CRAN
Date/Publication: 2012-06-22 12:46:35

More information about parser at CRAN
Permanent link

Package hive updated to version 0.1-15 with previous version 0.1-14 dated 2012-03-06

Title: Hadoop InteractiVE
Description: Hadoop InteractiVE, is an R extension facilitating distributed computing via the MapReduce paradigm. It provides an easy to use interface to Hadoop, the Hadoop Distributed File System (HDFS), and Hadoop Streaming.
Author: Ingo Feinerer [aut], Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl

Diff between hive versions 0.1-14 dated 2012-03-06 and 0.1-15 dated 2012-06-22

 DESCRIPTION |   18 +++++++++---------
 MD5         |    4 ++--
 R/handler.R |   17 ++++++++++++-----
 3 files changed, 23 insertions(+), 16 deletions(-)

More information about hive at CRAN
Permanent link

New package highlight with initial version 0.3.2
Package: highlight
Type: Package
Title: Syntax highlighter
Version: 0.3.2
Date: 2012-06-23
Author: Romain Francois
Maintainer: ORPHANED
Description: Syntax highlighter for R code based on the results of the R parser. Rendering in HTML and latex markup. Custom sweave driver performing syntax highlighting of R code chunks
License: GPL (>= 2)
Depends: R (>= 2.13.0), tools, codetools, utils, parser (>= 0.0-10), Rcpp (>= 0.9.6)
LinkingTo: Rcpp
RcppModules: highlight
Packaged: 2012-06-22 13:05:53 UTC; ripley
X-CRAN-Comment: Orphaned on 2012-06-18 as the orginal maintainer, Romain Francois , is unrespsonsive.
Repository: CRAN
Date/Publication: 2012-06-22 13:08:45

More information about highlight at CRAN
Permanent link

Package PP updated to version 0.2 with previous version 0.1 dated 2011-09-10

Title: Person Parameter estimation
Description: The PP package includes estimation of (MLE and WLE) person parameters for the 3-PL model (three parameter logistic model) and the GPCM (generalized partial credit model). The parameters are estimated under the assumption that the other parameters are known and fixed. The PP package also provides two functions to estimate person parameters for the 1-PL (Rasch Model). The package could be useful when items from an itempool/itembank with known item parameters are administered to a new population of testtakers and an ability estimation for every testtaker is needed.
Author: Manuel Reif
Maintainer: Manuel Reif

Diff between PP versions 0.1 dated 2011-09-10 and 0.2 dated 2012-06-22

 DESCRIPTION        |   10 -
 MD5                |   34 ++-
 R/PP_3PLmle.R      |    9 -
 R/PP_3PLwle.R      |   12 -
 R/PP_GPCMmle.R     |  213 ++++++++++++------------
 R/PP_GPCMwle.R     |  454 ++++++++++++++++++++++++++---------------------------
 R/PP_RMmle.R       |    7 
 R/co_3PL.R         |only
 R/co_gpcm.R        |only
 man/PP-package.Rd  |   11 -
 man/PP_3PLmle.Rd   |    9 -
 man/PP_3PLwle.Rd   |   15 -
 man/PP_GPCMmle.Rd  |   22 +-
 man/PP_GPCMwle.Rd  |   24 +-
 man/PP_RMmle.Rd    |   14 -
 man/PP_RMwle.Rd    |   17 -
 man/summary.PPd.Rd |   22 --
 man/summary.PPp.Rd |   22 --
 man/summary.PPr.Rd |   26 ---
 19 files changed, 434 insertions(+), 487 deletions(-)

More information about PP at CRAN
Permanent link

Package plotrix updated to version 3.4-2 with previous version 3.4-1 dated 2012-05-19

Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi, Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos, Robby Engelmann, Michael Hecker, Felix Steinbeck, Hans Borchers, Henrik Singmann,Ted Toal
Maintainer: Jim Lemon

Diff between plotrix versions 3.4-1 dated 2012-05-19 and 3.4-2 dated 2012-06-22

 DESCRIPTION             |   10 +++---
 INDEX                   |    3 +
 MD5                     |   40 +++++++++++++-----------
 NAMESPACE               |    3 +
 NEWS                    |    5 +++
 R/addtable2plot.R       |   26 ++++++++-------
 R/arctext.R             |   39 +++++++++++++----------
 R/barlabels.R           |only
 R/barp.R                |   24 +++++++-------
 R/draw.arc.R            |   80 ++++++++++++++++++++++++++++--------------------
 R/draw.radial.line.R    |only
 R/radialtext.R          |only
 R/spread.labels.R       |   48 +++++++++++++++++++---------
 R/staircase.plot.R      |   21 +++++++-----
 R/vectorField.R         |    4 +-
 man/addtable2plot.Rd    |    6 +++
 man/arctext.Rd          |    6 ++-
 man/barlabels.Rd        |only
 man/barp.Rd             |   24 ++++++++++----
 man/draw.arc.Rd         |   22 ++++++++-----
 man/draw.radial.line.Rd |only
 man/radialtext.Rd       |only
 man/staircase.plot.Rd   |   11 +++++-
 man/vectorField.Rd      |    6 ++-
 24 files changed, 236 insertions(+), 142 deletions(-)

More information about plotrix at CRAN
Permanent link

New package GA with initial version 1.0
Package: GA
Type: Package
Version: 1.0
Date: 2012-06-21
Title: Genetic Algorithms
Description: An R package for optimization using genetic algorithms. The package provides a flexible general-purpose set of tools for implementing genetic algorithms search in both the continuous and discrete case, whether constrained or not. Users can easily define their own objective function depending on the problem at hand. Several genetic operators are available and can be combined to explore the best settings for the current task. Furthermore, users can define new genetic operators and easily evaluate their performances.
Author: Luca Scrucca
Maintainer: Luca Scrucca
Depends: methods, R (>= 2.14)
License: GPL (>= 2)
ByteCompile: true
LazyLoad: yes
Packaged: 2012-06-22 10:06:41 UTC; luca
Repository: CRAN
Date/Publication: 2012-06-22 10:37:04

More information about GA at CRAN
Permanent link

Package drc updated to version 2.3-0 with previous version 2.2-9 dated 2012-06-10

Title: Analysis of dose-response curves
Description: Analysis of one or multiple curves with focus on concentration-response, dose-response and time-response curves used, for example in biology, environmental sciences, medicine, pharmacology, toxicology.
Author: Christian Ritz , Jens Strebig
Maintainer: Christian Ritz

Diff between drc versions 2.2-9 dated 2012-06-10 and 2.3-0 dated 2012-06-22

 drc-2.2-9/drc/R/drmEMeventtime.R     |only
 drc-2.2-9/drc/R/genLoewe2.R          |only
 drc-2.3-0/drc/DESCRIPTION            |    8 ++++----
 drc-2.3-0/drc/MD5                    |   24 ++++++++++++------------
 drc-2.3-0/drc/NEWS                   |    2 ++
 drc-2.3-0/drc/R/drmEMeventtime.r     |only
 drc-2.3-0/drc/R/genLoewe2.r          |only
 drc-2.3-0/drc/R/vcov.drc.R           |   11 +++++++++--
 drc-2.3-0/drc/data/RScompetition.rda |binary
 drc-2.3-0/drc/data/daphnids.rda      |binary
 drc-2.3-0/drc/data/earthworms.rda    |binary
 drc-2.3-0/drc/data/finney71.rda      |binary
 drc-2.3-0/drc/data/heartrate.rda     |binary
 drc-2.3-0/drc/data/leaflength.rda    |binary
 drc-2.3-0/drc/man/ursa.Rd            |    3 +++
 15 files changed, 30 insertions(+), 18 deletions(-)

More information about drc at CRAN
Permanent link

Package adaptMCMC updated to version 1.1 with previous version 1.0.3 dated 2012-05-16

Title: Implementation of a generic adaptive Monte Carlo Markov Chain sampler
Description: This package provides an implementation of the generic adaptive Monte Carlo Markov chain sampler proposed by Vihola (2011).
Author: Andreas Scheidegger, ,
Maintainer: Andreas Scheidegger

Diff between adaptMCMC versions 1.0.3 dated 2012-05-16 and 1.1 dated 2012-06-22

 DESCRIPTION                |    8 ++++----
 MD5                        |    8 ++++----
 R/Adaptive_MCMC.R          |   11 +++++++----
 man/MCMC.Rd                |    7 +++++--
 man/genericMCMC-package.Rd |    4 ++--
 5 files changed, 22 insertions(+), 16 deletions(-)

More information about adaptMCMC at CRAN
Permanent link

Package soilDB updated to version 0.6-2 with previous version 0.3-3 dated 2012-01-16

Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: D.E. Beaudette and J.M. Skovlin
Maintainer: D.E. Beaudette

Diff between soilDB versions 0.3-3 dated 2012-01-16 and 0.6-2 dated 2012-06-22

 DESCRIPTION                            |   15 ++--
 MD5                                    |   76 +++++++++++---------
 NAMESPACE                              |   20 +++++
 NEWS                                   |   27 ++++++-
 R/MUKEYS_by_ll_bbox.R                  |    2 
 R/SDA_query.R                          |   16 ++--
 R/fetchNASIS.R                         |only
 R/fetchPedonPC.R                       |   18 +++-
 R/getHzErrorsNASIS.R                   |only
 R/getHzErrorsPedonPC.R                 |    4 -
 R/get_colors_from_NASIS_db.R           |    9 +-
 R/get_colors_from_pedon_db.R           |    4 -
 R/get_extended_data_from_NASIS_db.R    |  121 +++++++++++++++++++++++++--------
 R/get_extended_data_from_pedon_db.R    |  117 +++++++++++++++++++++++--------
 R/get_hz_data_from_NASIS_db.R          |   45 ++++++++----
 R/get_hz_data_from_pedon_db.R          |   51 ++++++++++---
 R/get_site_data_from_NASIS_db.R        |   40 +++++++---
 R/get_site_data_from_pedon_db.R        |   32 +++++---
 R/get_veg_from_AK_Site.R               |    6 +
 R/mapunit_geom_by_ll_bbox.R            |    8 +-
 R/nasis_component_data.R               |only
 R/utils.R                              |only
 TODO                                   |only
 data                                   |only
 man/SDA_query.Rd                       |   20 ++++-
 man/fetchNASIS.Rd                      |only
 man/fetchPedonPC.Rd                    |   34 +++++++--
 man/get_colors_from_NASIS_db.Rd        |   12 ---
 man/get_colors_from_pedon_db.Rd        |    5 -
 man/get_extended_data_from_NASIS_db.Rd |    5 -
 man/get_extended_data_from_pedon_db.Rd |    6 -
 man/get_hz_data_from_NASIS_db.Rd       |   10 --
 man/get_hz_data_from_pedon_db.Rd       |    4 -
 man/get_site_data_from_NASIS_db.Rd     |   14 ---
 man/get_site_data_from_pedon_db.Rd     |    9 --
 man/get_veg_from_AK_Site.Rd            |    6 -
 man/get_veg_from_MT_veg_db.Rd          |    4 -
 man/get_veg_other_from_MT_veg_db.Rd    |    4 -
 man/get_veg_species_from_MT_veg_db.Rd  |    4 -
 man/loafercreek.Rd                     |only
 man/mapunit_geom_by_ll_bbox.Rd         |    1 
 man/soilDB-package.Rd                  |   69 ------------------
 42 files changed, 495 insertions(+), 323 deletions(-)

More information about soilDB at CRAN
Permanent link

Package gstat updated to version 1.0-11 with previous version 1.0-10 dated 2011-11-16

Title: spatial and spatio-temporal geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point or block (co)kriging, sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.
Author: Edzer Pebesma and others
Maintainer: Edzer Pebesma

Diff between gstat versions 1.0-10 dated 2011-11-16 and 1.0-11 dated 2012-06-22

 gstat-1.0-10/gstat/src/matrixio.c            |only
 gstat-1.0-10/gstat/src/memstat.c             |only
 gstat-1.0-10/gstat/src/otherio.c             |only
 gstat-1.0-10/gstat/src/plot.c                |only
 gstat-1.0-10/gstat/src/report.c              |only
 gstat-1.0-10/gstat/src/sparseio.c            |only
 gstat-1.0-10/gstat/src/spbkp.c               |only
 gstat-1.0-10/gstat/src/spchfctr.c            |only
 gstat-1.0-10/gstat/src/splufctr.c            |only
 gstat-1.0-10/gstat/src/spswap.c              |only
 gstat-1.0-11/gstat/DESCRIPTION               |   20 +-
 gstat-1.0-11/gstat/MD5                       |  107 ++++++---------
 gstat-1.0-11/gstat/R/krige0.R                |   11 -
 gstat-1.0-11/gstat/R/plot.variogramCloud.R   |    7 
 gstat-1.0-11/gstat/R/show.vgms.R             |   46 ++++--
 gstat-1.0-11/gstat/R/vgm.R                   |   13 +
 gstat-1.0-11/gstat/data/coalash.rda          |binary
 gstat-1.0-11/gstat/data/fulmar.rda           |binary
 gstat-1.0-11/gstat/data/jura.rda             |binary
 gstat-1.0-11/gstat/data/meuse.all.rda        |binary
 gstat-1.0-11/gstat/data/meuse.alt.rda        |binary
 gstat-1.0-11/gstat/data/ncp.grid.rda         |binary
 gstat-1.0-11/gstat/data/oxford.rda           |binary
 gstat-1.0-11/gstat/data/pcb.rda              |binary
 gstat-1.0-11/gstat/data/sic2004.rda          |binary
 gstat-1.0-11/gstat/data/sic97.rda            |binary
 gstat-1.0-11/gstat/data/tull.rda             |binary
 gstat-1.0-11/gstat/data/vv.rda               |binary
 gstat-1.0-11/gstat/data/walker.rda           |binary
 gstat-1.0-11/gstat/data/wind.rda             |binary
 gstat-1.0-11/gstat/demo/00Index              |    1 
 gstat-1.0-11/gstat/demo/a2p.R                |only
 gstat-1.0-11/gstat/inst/ChangeLog            |  191 +++++++++++++++++++++++++++
 gstat-1.0-11/gstat/inst/doc/gstat.pdf        |binary
 gstat-1.0-11/gstat/inst/doc/prs.pdf          |binary
 gstat-1.0-11/gstat/inst/doc/st.pdf           |binary
 gstat-1.0-11/gstat/man/jura.Rd               |   37 +++--
 gstat-1.0-11/gstat/man/oxford.Rd             |    6 
 gstat-1.0-11/gstat/man/show.vgms.Rd          |   12 -
 gstat-1.0-11/gstat/man/variogram.Rd          |    8 -
 gstat-1.0-11/gstat/man/vgm.Rd                |    7 
 gstat-1.0-11/gstat/src/s.c                   |   28 +--
 gstat-1.0-11/gstat/src/version.h             |    4 
 gstat-1.0-11/gstat/tests/blockkr.Rout.save   |    4 
 gstat-1.0-11/gstat/tests/covtable.Rout.save  |    4 
 gstat-1.0-11/gstat/tests/cv.Rout.save        |   21 ++
 gstat-1.0-11/gstat/tests/cv3d.Rout.save      |   25 +--
 gstat-1.0-11/gstat/tests/fit.Rout.save       |    4 
 gstat-1.0-11/gstat/tests/krige0.Rout.save    |    4 
 gstat-1.0-11/gstat/tests/line.Rout.save      |    4 
 gstat-1.0-11/gstat/tests/merge.Rout.save     |    4 
 gstat-1.0-11/gstat/tests/na.action.Rout.save |    4 
 gstat-1.0-11/gstat/tests/rings.Rout.save     |    4 
 gstat-1.0-11/gstat/tests/sim.Rout.save       |    4 
 gstat-1.0-11/gstat/tests/unproj.R            |    6 
 gstat-1.0-11/gstat/tests/unproj.Rout.save    |   19 +-
 gstat-1.0-11/gstat/tests/variogram.Rout.save |    4 
 gstat-1.0-11/gstat/tests/vdist.Rout.save     |    4 
 gstat-1.0-11/gstat/tests/windst.R            |    1 
 gstat-1.0-11/gstat/tests/windst.Rout.save    |   29 +++-
 60 files changed, 460 insertions(+), 183 deletions(-)

More information about gstat at CRAN
Permanent link

Package formatR updated to version 0.5 with previous version 0.4 dated 2012-04-02

Title: Format R Code Automatically
Description: This package provides a function tidy.source() and optionally a GUI (by gWidgets and preferably gWidgetsRGtk2) to format R source code. Spaces and indent will be added to the code automatically, and comments will be preserved under certain conditions, so that R code will be more human-readable and tidy.
Author: Yihui Xie
Maintainer: Yihui Xie

Diff between formatR versions 0.4 dated 2012-04-02 and 0.5 dated 2012-06-22

 DESCRIPTION          |   11 +++-----
 MD5                  |   23 +++++++++--------
 NAMESPACE            |    1 
 NEWS                 |   27 ++++++++++++++++++++
 R/eval.R             |    6 ++--
 R/tidy.R             |   68 +++------------------------------------------------
 R/utils.R            |only
 inst/doc/formatR.Rnw |   35 +++++++++++++-------------
 inst/doc/formatR.bib |   18 ++++++-------
 inst/doc/formatR.lyx |   42 +++++++++++++++----------------
 inst/doc/formatR.pdf |binary
 man/tidy.eval.Rd     |    6 ++--
 man/unmask.source.Rd |    5 ---
 13 files changed, 103 insertions(+), 139 deletions(-)

More information about formatR at CRAN
Permanent link

New package capwire with initial version 1.1.2
Package: capwire
Type: Package
Title: Estimates population size from non-invasive sampling
Version: 1.1.2
Date: 2012-06-20
Author: Matthew W. Pennell and Craig R. Miller
Maintainer: Matthew W. Pennell
Description: Fits models from Miller et al. 2005 to estimate population sizes from natural populations. Several models are implemented. Package also includes functions to perform a likelihood ratio test to choose between models, perform parametric bootstrapping to obtain confidence intervals and multiple functions to simulate data.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-06-21 06:26:34 UTC; mwp
Repository: CRAN
Date/Publication: 2012-06-22 06:02:11

More information about capwire at CRAN
Permanent link

New package Bclim with initial version 2.1
Package: Bclim
Type: Package
Title: Bayesian Palaeoclimate Reconstruction from Pollen
Version: 2.1
Date: 2012-06-18
Author: Andrew Parnell, Thinh Doan and James Sweeney
Maintainer: Andrew Parnell
Depends: mclust, hdrcde, statmod, MASS
Suggests: Bchron, doMC, foreach
Description: This package takes pollen/time data from lake cores and produces a Bayesian posterior distribution of palaeoclimate from that location after fitting a non-linear non-Gaussian state-space model.
License: GPL (> 2)
Packaged: 2012-06-21 11:28:30 UTC; andrewparnell
Repository: CRAN
Date/Publication: 2012-06-22 05:42:18

More information about Bclim at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.