CRANberries

Mon, 02 Jul 2012

Package LaplacesDemon updated to version 12.07.02 with previous version 12.06.04 dated 2012-06-04

Title: Software for Bayesian Inference
Description: Laplace's Demon is software for Bayesian inference.
Author: Byron Hall
Maintainer: Byron Hall

Diff between LaplacesDemon versions 12.06.04 dated 2012-06-04 and 12.07.02 dated 2012-07-02

 LaplacesDemon-12.06.04/LaplacesDemon/R/is.demonoid.R                            |only
 LaplacesDemon-12.06.04/LaplacesDemon/R/partial.R                                |only
 LaplacesDemon-12.06.04/LaplacesDemon/man/is.demonoid.Rd                         |only
 LaplacesDemon-12.06.04/LaplacesDemon/man/partial.Rd                             |only
 LaplacesDemon-12.07.02/LaplacesDemon/CHANGELOG                                  |   27 
 LaplacesDemon-12.07.02/LaplacesDemon/DESCRIPTION                                |   10 
 LaplacesDemon-12.07.02/LaplacesDemon/MD5                                        |  286 ++-
 LaplacesDemon-12.07.02/LaplacesDemon/NAMESPACE                                  |   19 
 LaplacesDemon-12.07.02/LaplacesDemon/R/BayesFactor.R                            |    8 
 LaplacesDemon-12.07.02/LaplacesDemon/R/BayesTheorem.R                           |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/R/CSF.R                                    |   28 
 LaplacesDemon-12.07.02/LaplacesDemon/R/CenterScale.R                            |   26 
 LaplacesDemon-12.07.02/LaplacesDemon/R/Combine.R                                |  152 +-
 LaplacesDemon-12.07.02/LaplacesDemon/R/Consort.R                                |  104 +
 LaplacesDemon-12.07.02/LaplacesDemon/R/ESS.R                                    |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/R/GIV.R                                    |   44 
 LaplacesDemon-12.07.02/LaplacesDemon/R/Gelman.Diagnostic.R                      |    2 
 LaplacesDemon-12.07.02/LaplacesDemon/R/IAT.R                                    |    7 
 LaplacesDemon-12.07.02/LaplacesDemon/R/Importance.R                             |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/R/Juxtapose.R                              |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/KLD.R                                    |   28 
 LaplacesDemon-12.07.02/LaplacesDemon/R/LML.R                                    |   28 
 LaplacesDemon-12.07.02/LaplacesDemon/R/LPL.interval.R                           |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/LaplaceApproximation.R                   |   14 
 LaplacesDemon-12.07.02/LaplacesDemon/R/LaplacesDemon.R                          |  741 +++++++---
 LaplacesDemon-12.07.02/LaplacesDemon/R/LaplacesDemon.RAM.R                      |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/LaplacesDemon.hpc.R                      |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/MCSE.R                                   |    7 
 LaplacesDemon-12.07.02/LaplacesDemon/R/Math.R                                   |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/Matrices.R                               |   34 
 LaplacesDemon-12.07.02/LaplacesDemon/R/PosteriorChecks.R                        |    6 
 LaplacesDemon-12.07.02/LaplacesDemon/R/SIR.R                                    |    6 
 LaplacesDemon-12.07.02/LaplacesDemon/R/Thin.R                                   |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/as.initial.values.R                      |   22 
 LaplacesDemon-12.07.02/LaplacesDemon/R/as.parm.names.R                          |    2 
 LaplacesDemon-12.07.02/LaplacesDemon/R/caterpillar.plot.R                       |   56 
 LaplacesDemon-12.07.02/LaplacesDemon/R/distributions.R                          |    6 
 LaplacesDemon-12.07.02/LaplacesDemon/R/interval.R                               |   18 
 LaplacesDemon-12.07.02/LaplacesDemon/R/is.appeased.R                            |    3 
 LaplacesDemon-12.07.02/LaplacesDemon/R/is.class.R                               |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/is.constrained.R                         |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/is.data.R                                |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/is.model.R                               |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/is.proper.R                              |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/is.stationary.R                          |    8 
 LaplacesDemon-12.07.02/LaplacesDemon/R/joint.density.plot.R                     |   12 
 LaplacesDemon-12.07.02/LaplacesDemon/R/p.interval.R                             |   30 
 LaplacesDemon-12.07.02/LaplacesDemon/R/plot.demonoid.R                          |    8 
 LaplacesDemon-12.07.02/LaplacesDemon/R/plot.demonoid.hpc.R                      |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/plot.demonoid.ppc.R                      |   19 
 LaplacesDemon-12.07.02/LaplacesDemon/R/plot.importance.R                        |    3 
 LaplacesDemon-12.07.02/LaplacesDemon/R/plot.juxtapose.R                         |only
 LaplacesDemon-12.07.02/LaplacesDemon/R/plot.laplace.R                           |    2 
 LaplacesDemon-12.07.02/LaplacesDemon/R/plot.laplace.ppc.R                       |   19 
 LaplacesDemon-12.07.02/LaplacesDemon/inst/doc/BayesianInference.Stex            |   75 -
 LaplacesDemon-12.07.02/LaplacesDemon/inst/doc/BayesianInference.pdf             |binary
 LaplacesDemon-12.07.02/LaplacesDemon/inst/doc/Examples.Stex                     |  501 +++---
 LaplacesDemon-12.07.02/LaplacesDemon/inst/doc/Examples.pdf                      |binary
 LaplacesDemon-12.07.02/LaplacesDemon/inst/doc/LaplacesDemonTutorial.Stex        |  338 ++--
 LaplacesDemon-12.07.02/LaplacesDemon/inst/doc/LaplacesDemonTutorial.pdf         |binary
 LaplacesDemon-12.07.02/LaplacesDemon/inst/doc/References.bib                    |  178 ++
 LaplacesDemon-12.07.02/LaplacesDemon/man/BayesFactor.Rd                         |  103 -
 LaplacesDemon-12.07.02/LaplacesDemon/man/BayesTheorem.Rd                        |   17 
 LaplacesDemon-12.07.02/LaplacesDemon/man/CSF.Rd                                 |   10 
 LaplacesDemon-12.07.02/LaplacesDemon/man/CenterScale.Rd                         |   67 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Combine.Rd                             |  110 +
 LaplacesDemon-12.07.02/LaplacesDemon/man/Consort.Rd                             |   38 
 LaplacesDemon-12.07.02/LaplacesDemon/man/ESS.Rd                                 |    7 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Elicitation.Rd                         |   24 
 LaplacesDemon-12.07.02/LaplacesDemon/man/GIV.Rd                                 |   38 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Gelman.Diagnostic.Rd                   |   61 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Geweke.Diagnostic.Rd                   |   11 
 LaplacesDemon-12.07.02/LaplacesDemon/man/IAT.Rd                                 |   45 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Importance.Rd                          |   67 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Juxtapose.Rd                           |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/KLD.Rd                                 |  118 +
 LaplacesDemon-12.07.02/LaplacesDemon/man/KS.Diagnostic.Rd                       |    5 
 LaplacesDemon-12.07.02/LaplacesDemon/man/LML.Rd                                 |   74 
 LaplacesDemon-12.07.02/LaplacesDemon/man/LPL.interval.Rd                        |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/LaplaceApproximation.Rd                |  241 +--
 LaplacesDemon-12.07.02/LaplacesDemon/man/LaplacesDemon-package.Rd               |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/LaplacesDemon.RAM.Rd                   |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/LaplacesDemon.Rd                       |  513 +++---
 LaplacesDemon-12.07.02/LaplacesDemon/man/Levene.Test.Rd                         |   17 
 LaplacesDemon-12.07.02/LaplacesDemon/man/MCSE.Rd                                |   29 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Math.Rd                                |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/Matrices.Rd                            |   41 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Mode.Rd                                |   26 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Model.Spec.Time.Rd                     |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/PosteriorChecks.Rd                     |   37 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Precision.Rd                           |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/SIR.Rd                                 |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Stick.Rd                               |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/Thin.Rd                                |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/as.initial.values.Rd                   |   37 
 LaplacesDemon-12.07.02/LaplacesDemon/man/as.parm.names.Rd                       |   62 
 LaplacesDemon-12.07.02/LaplacesDemon/man/burnin.Rd                              |    6 
 LaplacesDemon-12.07.02/LaplacesDemon/man/caterpillar.plot.Rd                    |   41 
 LaplacesDemon-12.07.02/LaplacesDemon/man/de.Finetti.Game.Rd                     |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Asymmetric.Laplace.Rd             |    6 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Asymmetric.Log.Laplace.Rd         |    2 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Bernoulli.Rd                      |    2 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Categorical.Rd                    |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Dirichlet.Rd                      |   11 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.HalfCauchy.Rd                     |    5 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.HalfNorm.Rd                       |    8 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Halft.Rd                          |   10 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Inverse.ChiSquare.Rd              |    2 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Inverse.Gamma.Rd                  |   11 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Inverse.Gaussian.Rd               |   12 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Inverse.Wishart.Rd                |   10 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Laplace.Precision.Rd              |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Laplace.Rd                        |    3 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Log.Laplace.Rd                    |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Log.Normal.Precision.Rd           |    6 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Multivariate.Cauchy.Precision.Rd  |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Multivariate.Cauchy.Rd            |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Multivariate.Laplace.Rd           |   18 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Multivariate.Normal.Precision.Rd  |    8 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Multivariate.Normal.Rd            |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Multivariate.Polya.Rd             |    6 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Multivariate.Power.Exponential.Rd |   22 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Multivariate.t.Precision.Rd       |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Multivariate.t.Rd                 |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Normal.Precision.Rd               |    6 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Normal.Variance.Rd                |    6 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Pareto.Rd                         |    2 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Power.Exponential.Rd              |   20 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Skew.Discrete.Laplace.Rd          |   12 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Skew.Laplace.Rd                   |   15 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Stick.Rd                          |   12 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Student.t.Precision.Rd            |    2 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Student.t.Rd                      |    4 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Truncated.Rd                      |   24 
 LaplacesDemon-12.07.02/LaplacesDemon/man/dist.Wishart.Rd                        |   18 
 LaplacesDemon-12.07.02/LaplacesDemon/man/interval.Rd                            |    5 
 LaplacesDemon-12.07.02/LaplacesDemon/man/is.appeased.Rd                         |   29 
 LaplacesDemon-12.07.02/LaplacesDemon/man/is.class.Rd                            |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/is.constrained.Rd                      |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/is.data.Rd                             |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/is.model.Rd                            |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/is.proper.Rd                           |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/is.stationary.Rd                       |   37 
 LaplacesDemon-12.07.02/LaplacesDemon/man/joint.density.plot.Rd                  |   34 
 LaplacesDemon-12.07.02/LaplacesDemon/man/log-log.Rd                             |   29 
 LaplacesDemon-12.07.02/LaplacesDemon/man/logit.Rd                               |   71 
 LaplacesDemon-12.07.02/LaplacesDemon/man/p.interval.Rd                          |   82 -
 LaplacesDemon-12.07.02/LaplacesDemon/man/plot.demonoid.Rd                       |   23 
 LaplacesDemon-12.07.02/LaplacesDemon/man/plot.demonoid.ppc.Rd                   |   14 
 LaplacesDemon-12.07.02/LaplacesDemon/man/plot.importance.Rd                     |    2 
 LaplacesDemon-12.07.02/LaplacesDemon/man/plot.juxtapose.Rd                      |only
 LaplacesDemon-12.07.02/LaplacesDemon/man/plot.laplace.Rd                        |    2 
 LaplacesDemon-12.07.02/LaplacesDemon/man/plot.laplace.ppc.Rd                    |   12 
 LaplacesDemon-12.07.02/LaplacesDemon/man/predict.demonoid.Rd                    |    3 
 LaplacesDemon-12.07.02/LaplacesDemon/man/predict.laplace.Rd                     |    3 
 LaplacesDemon-12.07.02/LaplacesDemon/man/print.demonoid.Rd                      |   12 
 LaplacesDemon-12.07.02/LaplacesDemon/man/summary.demonoid.ppc.Rd                |   39 
 LaplacesDemon-12.07.02/LaplacesDemon/man/summary.laplace.ppc.Rd                 |   41 
 158 files changed, 3398 insertions(+), 2093 deletions(-)

More information about LaplacesDemon at CRAN
Permanent link

Package devtools updated to version 0.7.1 with previous version 0.7 dated 2012-06-19

Title: Tools to make developing R code easier
Description: Collection of package development tools
Author: Hadley Wickham
Maintainer: Hadley Wickham

Diff between devtools versions 0.7 dated 2012-06-19 and 0.7.1 dated 2012-07-02

 DESCRIPTION   |    8 ++++----
 MD5           |   10 +++++-----
 NEWS          |    8 ++++++++
 R/build.r     |    2 +-
 R/load-code.r |    2 +-
 R/zzz.r       |    6 +++---
 6 files changed, 22 insertions(+), 14 deletions(-)

More information about devtools at CRAN
Permanent link

Package RPMG updated to version 2.1-2 with previous version 2.1-0 dated 2012-01-25

Title: Graphical User Interface (GUI) for interactive R analysis sessions
Description: Poor Man's Gui: create interactive R analysis sessions
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees

Diff between RPMG versions 2.1-0 dated 2012-01-25 and 2.1-2 dated 2012-07-02

 DESCRIPTION            |    6 +++---
 MD5                    |   17 ++++++++++++-----
 NEWS                   |only
 R/breakline.index.R    |only
 R/colwheel.R           |    2 +-
 R/local.file.R         |    4 ++--
 R/shade.col.R          |    8 ++++----
 R/slideshow.R          |only
 R/writeCOMMENT.R       |only
 man/RPMG-package.Rd    |    2 +-
 man/breakline.index.Rd |only
 man/slideshow.Rd       |only
 man/writeCOMMENT.Rd    |only
 13 files changed, 23 insertions(+), 16 deletions(-)

More information about RPMG at CRAN
Permanent link

Package rCUR updated to version 1.3 with previous version 1.2 dated 2012-06-19

Title: CUR decomposition package
Description: Functions and objects for CUR matrix decomposition.
Author: Andras Bodor, Norbert Solymosi
Maintainer: Andras Bodor

Diff between rCUR versions 1.2 dated 2012-06-19 and 1.3 dated 2012-07-02

 ChangeLog   |    4 ++++
 DESCRIPTION |    6 +++---
 MD5         |    9 ++++++---
 R/rCUR.R    |    2 +-
 tests       |only
 5 files changed, 14 insertions(+), 7 deletions(-)

More information about rCUR at CRAN
Permanent link

Package RcppArmadillo updated to version 0.3.2.3 with previous version 0.3.2.0 dated 2012-05-21

Title: Rcpp integration for Armadillo templated linear algebra library
Description: R and Armadillo integration using Rcpp Armadillo is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. A delayed evaluation approach is employed (during compile time) to combine several operations into one, and to reduce (or eliminate) the need for temporaries. This is accomplished through recursive templates and template meta-programming. This library is useful if C++ has been decided as the language of choice (due to speed and/or integration capabilities), rather than another language. The RcppArmadillo package includes the header files from the templated Armadillo library (currently version 3.2.3). Thus users do not need to install Armadillo itself in order to use RcppArmadillo. This Armadillo integration provides a nice illustration of the capabilities of the Rcpp package for seamless R and C++ integration. Armadillo is licensed under the GNU LGPL version 3 or later, while RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licenses under the GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel

Diff between RcppArmadillo versions 0.3.2.0 dated 2012-05-21 and 0.3.2.3 dated 2012-07-02

 ChangeLog                                               |   20 ++++
 DESCRIPTION                                             |   13 +--
 MD5                                                     |   30 +++---
 inst/NEWS                                               |   23 +++++
 inst/doc/Makefile                                       |   14 ++-
 inst/doc/RcppArmadillo-intro.Rnw                        |only
 inst/doc/RcppArmadillo-intro.pdf                        |only
 inst/doc/RcppArmadillo-unitTests.pdf                    |binary
 inst/doc/RcppArmadillo.bib                              |only
 inst/doc/kalmanExample.pdf                              |only
 inst/doc/unitTests-results/RcppArmadillo-unitTests.html |   25 +++--
 inst/doc/unitTests-results/RcppArmadillo-unitTests.txt  |   35 +++-----
 inst/examples/fastLm.r                                  |   37 +++++++-
 inst/include/armadillo_bits/Cube_bones.hpp              |   69 ++++++++--------
 inst/include/armadillo_bits/arma_version.hpp            |    2 
 inst/include/armadillo_bits/debug.hpp                   |    2 
 inst/include/armadillo_bits/glue_cor_meat.hpp           |    8 -
 inst/include/armadillo_bits/glue_cov_meat.hpp           |   14 +--
 18 files changed, 189 insertions(+), 103 deletions(-)

More information about RcppArmadillo at CRAN
Permanent link

Package kaps updated to version 0.9-8 with previous version 0.9-3 dated 2012-05-23

Title: K Adaptive Partitioning for Survival data
Description: This package provides some routines to conduct the K-adaptive parititioning (kaps) and recursive partitioning (lrtree) for survival data, with the application to SEER (Surveillance Epidemiology and End Results). A function kaps is an implementation version of our algorithm kaps which provides minimax based partitioing rule by log-rank test. A fuction lrtree enables researchers to conduct log-rank survival tree proposed by Segal (1988).
Author: Soo-Heang Eo and HyungJun Cho
Maintainer: Soo-Heang Eo

Diff between kaps versions 0.9-3 dated 2012-05-23 and 0.9-8 dated 2012-07-02

 kaps-0.9-3/kaps/R/apss.control.R      |only
 kaps-0.9-3/kaps/ToDo                  |only
 kaps-0.9-3/kaps/man/apss.control.Rd   |only
 kaps-0.9-8/kaps/DESCRIPTION           |    8 -
 kaps-0.9-8/kaps/MD5                   |   45 +++---
 kaps-0.9-8/kaps/NAMESPACE             |    2 
 kaps-0.9-8/kaps/NEWS                  |   15 ++
 kaps-0.9-8/kaps/R/Classes.R           |   21 +--
 kaps-0.9-8/kaps/R/accessaries.R       |  228 +++++++++++++++++++++-------------
 kaps-0.9-8/kaps/R/apss.R              |   26 +--
 kaps-0.9-8/kaps/R/growing.lrtree.R    |    7 -
 kaps-0.9-8/kaps/R/kaps.R              |   48 +++----
 kaps-0.9-8/kaps/R/kaps.control.R      |only
 kaps-0.9-8/kaps/R/lrtree.R            |   34 ++---
 kaps-0.9-8/kaps/R/lrtree.control.R    |    2 
 kaps-0.9-8/kaps/R/predict.R           |   44 ++++--
 kaps-0.9-8/kaps/R/selectionPart.R     |   46 +-----
 kaps-0.9-8/kaps/R/split.lrtree.R      |    8 -
 kaps-0.9-8/kaps/R/subfunctions.R      |   41 ++++--
 kaps-0.9-8/kaps/man/Tree-classes.Rd   |    2 
 kaps-0.9-8/kaps/man/apss-classes.Rd   |   14 +-
 kaps-0.9-8/kaps/man/kaps.Rd           |   19 +-
 kaps-0.9-8/kaps/man/kaps.control.Rd   |only
 kaps-0.9-8/kaps/man/lrtree.Rd         |   20 +-
 kaps-0.9-8/kaps/man/lrtree.control.Rd |    3 
 kaps-0.9-8/kaps/man/predict.Rd        |    3 
 26 files changed, 359 insertions(+), 277 deletions(-)

More information about kaps at CRAN
Permanent link

Package GEOmap updated to version 1.6-06 with previous version 1.6-03 dated 2012-01-25

Title: Topographic and Geologic Mapping
Description: Set of routines for making Map Projections (forward and inverse), Topographic Maps, Perspective plots, Geological Maps, geological map symbols, geological databases, interactive plotting and selection of focus regions.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees

Diff between GEOmap versions 1.6-03 dated 2012-01-25 and 1.6-06 dated 2012-07-02

 DESCRIPTION             |    8 ++--
 MD5                     |   30 ++++++++-------
 NEWS                    |only
 R/GEOmap.breakline.R    |   24 ++++++++----
 R/GEOmap.limit.R        |only
 R/NoOverlap.R           |   22 ++++++-----
 R/demcmap.R             |    2 -
 R/lambert.cc.ll.R       |    9 ++--
 R/lambert.cc.xy.R       |   14 ++++---
 R/plotGEOmapXY.R        |    1 
 R/plotUTM.R             |    8 ++--
 R/plotusa.R             |    2 -
 R/sqrTICXY.R            |   92 ++++++++++++++++++++++++------------------------
 inst/doc/GEOmap.pdf     |binary
 man/GEOmap-package.Rd   |    4 +-
 man/GEOmap.Extract.Rd   |    4 ++
 man/GEOmap.breakline.Rd |    2 -
 17 files changed, 123 insertions(+), 99 deletions(-)

More information about GEOmap at CRAN
Permanent link

New package CR with initial version 1.0
Package: CR
Type: Package
Title: Power Calculation for Weighted Log-Rank Tests in Cure Rate Models
Version: 1.0
Date: 2012-06-18
Author: Emil A. Cornea, Bahjat F. Qaqish, and Joseph G. Ibrahim
Maintainer: Emil A. Cornea
Description: This package contains R-functions to perform power calculation in a group sequential clinical trial with censored survival data and possibly unequal patient allocation between treatment and control groups. The fuctions can also be used to determine the study duration in a clinical trial with censored survival data as the sum of the accrual duration, which determines the sample size in a traditional sense, and the follow-up duration, which more or less controls the number of events to be observed. This package also contains R functions and methods to display the computed results.
License: GPL-2
Depends: methods
Packaged: 2012-07-02 13:33:05 UTC; Mihaela
Repository: CRAN
Date/Publication: 2012-07-02 14:27:34

More information about CR at CRAN
Permanent link

Package rda updated to version 1.0.2-2 with previous version 1.0.2-1 dated 2012-06-30

Title: Shrunken Centroids Regularized Discriminant Analysis
Description: Shrunken Centroids Regularized Discriminant Analysis for the classification purpose in high dimensional data.
Author: Yaqian Guo Trevor Hastie Robert Tibshirani
Maintainer: Rob Tibshirani

Diff between rda versions 1.0.2-1 dated 2012-06-30 and 1.0.2-2 dated 2012-07-02

 DESCRIPTION |   13 ++++++++-----
 INDEX       |only
 MD5         |    3 ++-
 3 files changed, 10 insertions(+), 6 deletions(-)

More information about rda at CRAN
Permanent link

Package miRtest updated to version 1.3 with previous version 1.2 dated 2012-03-06

Title: combined miRNA- and mRNA-testing
Description: combined miRNA- and mRNA-testing
Author: Stephan Artmann, Klaus Jung, Tim Beissbarth
Maintainer: Stephan Artmann

Diff between miRtest versions 1.2 dated 2012-03-06 and 1.3 dated 2012-07-02

 DESCRIPTION          |   11 +-
 MD5                  |   12 +-
 inst/doc/miRtest.Rnw |  268 +++++++++++++++++++++++++--------------------------
 inst/doc/miRtest.pdf |binary
 man/gs.test.Rd       |    8 -
 man/miR.test.Rd      |    8 -
 man/miRtest.Rd       |   10 -
 7 files changed, 160 insertions(+), 157 deletions(-)

More information about miRtest at CRAN
Permanent link

Package CDVine updated to version 1.1-8 with previous version 1.1-7 dated 2012-05-22

Title: Statistical inference of C- and D-vine copulas
Description: This package provides functions for statistical inference of canonical vine (C-vine) and D-vine copulas. It contains tools for bivariate exploratory data analysis and for bivariate as well as vine copula selection. Models can be estimated either sequentially or by joint maximum likelihood estimation. Sampling algorithms and plotting methods are also included. Data is assumed to lie in the unit hypercube (so-called copula data).
Author: Ulf Schepsmeier, Eike Christian Brechmann
Maintainer: Ulf Schepsmeier

Diff between CDVine versions 1.1-7 dated 2012-05-22 and 1.1-8 dated 2012-07-02

 CDVine.pdf                  |binary
 DESCRIPTION                 |   13 
 MD5                         |   28 
 NAMESPACE                   |    2 
 R/BiCopLambda.r             |   85 -
 R/CDVineTreePlot.R          |   34 
 Thumbs.db                   |only
 inst/ChangeLog              |   10 
 inst/doc/CDVine-package.pdf |binary
 inst/doc/CDVine-package.rnw | 2359 ++++++++++++++++++++++----------------------
 inst/doc/references.bib     |  162 +--
 inst/doc/workflow1.pdf      |only
 man/BiCopPar2Tau.Rd         |    4 
 man/CDVine-package.Rd       |    6 
 man/CDVineTreePlot.Rd       |    3 
 src/likelihood.c            |    4 
 16 files changed, 1392 insertions(+), 1318 deletions(-)

More information about CDVine at CRAN
Permanent link

New package AWS.tools with initial version 0.0.5
Package: AWS.tools
Title: R package to use Amazon Web Services
Version: 0.0.5
Maintainer: Whit Armstrong
Author: Whit Armstrong
Description: R package for Amazon Web Services EC2/S3
License: GPL-3
Depends: XML
SystemRequirements: ec2-api-tools, s3cmd
URL: http://github.com/armstrtw/AWS.tools
BugReports: http://github.com/armstrtw/AWS.tools/issues
Packaged: 2012-01-03 00:46:21 UTC; warmstrong
Repository: CRAN
Date/Publication: 2012-01-03 07:46:48

More information about AWS.tools at CRAN
Permanent link

New package AUCRF with initial version 1.1
Package: AUCRF
Type: Package
Title: Variable Selection with Random Forest and the Area Under the Curve
Version: 1.1
Date: 2012-03-19
Author: Victor Urrea, M.Luz Calle
Maintainer: Victor Urrea
Depends: R (>= 2.11.0), randomForest
Description: Variable selection using Random Forest based on optimizing the area-under-the ROC curve (AUC) of the Random Forest.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-03-19 08:32:38 UTC; victor
Repository: CRAN
Date/Publication: 2012-03-19 11:12:24

More information about AUCRF at CRAN
Permanent link

New package ARTIVA with initial version 1.1
Package: ARTIVA
Type: Package
Title: What the package does (short line)
Version: 1.1
Date: 2012-06-01
Author: S. Lebre and G. Lelandais.
Maintainer: S. Lebre
Depends: MASS, igraph0, gplots
Description: This package generates Reversible Jump MCMC (RJ-MCMC) sampling for approximating the posterior distribution of a time varying regulatory network, under the Auto Regressive TIme VArying (ARTIVA) model (for a detailed description of the algorithm, see Lebre et al. BMC Systems Biology, 2010). Starting from time-course gene expression measurements for a gene of interest (referred to as "target gene") and a set of genes (referred to as "parent genes") which may explain the expression of the target gene, the ARTIVA procedure identifies temporal segments for which a set of interactions occur between the "parent genes" and the "target gene". The time points that delimit the different temporal segments are referred to as changepoints (CP).
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Packaged: 2012-06-01 10:29:34 UTC; sophie
Repository: CRAN
Date/Publication: 2012-06-01 11:17:10

More information about ARTIVA at CRAN
Permanent link

New package APSIMBatch with initial version 0.1.0.2374
Package: APSIMBatch
Maintainer: Bangyou Zheng
License: GPL-3
Title: Analysis the output of Apsim software
Type: Package
Author: Bangyou Zheng
Description: Run APSIM in Batch mode
Version: 0.1.0.2374
Date: 2010-05-17
Collate: 'APSIMHPC.R' 'string.r'
Packaged: 2011-07-26 05:51:32 UTC; zhe00a
Repository: CRAN
Date/Publication: 2011-07-26 10:13:37

More information about APSIMBatch at CRAN
Permanent link

New package ANN with initial version 0.1.4
Package: ANN
Type: Package
Title: Feedforward Artificial Neural Network optimized by Genetic Algorithm
Version: 0.1.4
Date: 2012-04-06
Author: Francis Roy-Desrosiers
Maintainer: Francis Roy-Desrosiers
Description: This package provides a feedforward Artificial Neural Network (ANN) optimized by Genetic Algorithm (GA). Modifications in the Genetic algorithm from CUDAANN r6 have been made to improve the speed, the convergence and the memory management.
Depends: R (>= 2.12.0)
License: GPL-3
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: ann
Repository/R-Forge/Revision: 5
Packaged: 2012-04-20 22:15:07 UTC; rforge
Date/Publication: 2012-04-21 04:25:14

More information about ANN at CRAN
Permanent link

New package AMORE with initial version 0.2-12
Encoding: UTF-8
Package: AMORE
Version: 0.2-12
Date: 2010-03-25
Title: A MORE flexible neural network package
Author: Manuel Castejón Limas, Joaquín B. Ordieres Meré, Ana González Marcos, Francisco Javier Martínez de Pisón Ascacibar, Alpha V. Pernía Espinoza, Fernando Alba Elías
Maintainer: Manuel Castejón Limas
Description: This package was born to release the TAO robust neural network algorithm to the R users. It has grown and I think it can be of interest for the users wanting to implement their own training algorithms as well as for those others whose needs lye only in the "user space".
License: GPL (>= 2)
URL: http://rwiki.sciviews.org/doku.php?id=packages:cran:amore
LazyLoad: yes
Packaged: 2010-03-24 22:39:07 UTC; mcasl
Repository: CRAN
Date/Publication: 2010-03-25 07:01:15

More information about AMORE at CRAN
Permanent link

New package AMAP.Seq with initial version 1.0
Package: AMAP.Seq
Type: Package
Title: Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
Version: 1.0
Date: 2012-06-13
Author: Yaqing Si
Maintainer: Yaqing Si
Description: An Approximated Most Average Powerful Test with Optimal FDR Control with Application to RNA-seq Data
License: GPL (>= 2)
Packaged: 2012-06-19 14:27:36 UTC; siyaqing
Repository: CRAN
Date/Publication: 2012-06-19 14:55:47

More information about AMAP.Seq at CRAN
Permanent link

New package AMA with initial version 1.0.8
Package: AMA
Type: Package
Title: Anderson-Moore Algorithm
Version: 1.0.8
Depends: rJava
Date: 2010-10-13
Author: Gary Anderson, Aneesh Raghunandan
Maintainer: Gary Anderson
Description: Implements Anderson-Moore algorithm for solving linear rational expectations models. For information about the algorithm and its uses, please see http://www.federalreserve.gov/pubs/oss/oss4/aimindex.html. This version works on both Unix and Windows. For questions about the algorithm and its implementation/applications, please contact gary.anderson@frb.gov. If you are having technical issues with the package, please contact aneesh.raghunandan@yale.edu.
License: GPL-2
Copyright: The "C" code, sparseAim.c, implementing the basic algorithm is in the public domain and may be used freely. However, the authors would appreciate acknowledgement of the source by citation of any of the following papers: Anderson, G. and Moore, G. "A Linear Algebraic Procedure For Solving Linear Perfect Foresight Models." Economics Letters, 17, 1985. Anderson, G. "Solving Linear Rational Expectations Models: A Horse Race." Computational Economics, 2008, vol. 31, issue 2, pp. 95-113 Anderson, G. "A Reliable and Computationally Efficient Algorithm for Imposing the Saddle Point Property in Dynamic Models." Journal of Economic Dynamics and Control, 2010, vol 34, issue 3, pp. 472-489. \n
SystemRequirements: Java
LazyLoad: yes
Packaged: 2010-10-27 15:11:14 UTC; m1gsa00
Repository: CRAN
Date/Publication: 2010-10-27 19:18:40

More information about AMA at CRAN
Permanent link

New package ALS with initial version 0.0.5
Package: ALS
Type: Package
Title: multivariate curve resolution alternating least squares (MCR-ALS)
Version: 0.0.5
Author: Katharine M. Mullen
Maintainer: Katharine Mullen
Depends: nnls (>= 1.1), Iso, R (>= 2.10)
Description: Alternating least squares is often used to resolve components contributing to data with a bilinear structure; the basic technique may be extended to alternating constrained least squares. Commonly applied constraints include unimodality, non-negativity, and normalization of components. Several data matrices may be decomposed simultaneously by assuming that one of the two matrices in the bilinear decomposition is shared between datasets.
License: GPL (>= 2)
Packaged: 2012-03-19 15:54:26 UTC; kmullen
Repository: CRAN
Date/Publication: 2012-03-19 16:28:55

More information about ALS at CRAN
Permanent link

New package AcceptanceSampling with initial version 1.0-2
Package: AcceptanceSampling
Type: Package
Title: Creation and evaluation of Acceptance Sampling Plans
Version: 1.0-2
Date: 2011-11-17
Author: Andreas Kiermeier
Maintainer: Andreas Kiermeier
Description: This package provides functionality for creating and evaluating acceptance sampling plans. Plans can be single, double or multiple sampling plans
Depends: methods, R(>= 2.4.0), stats
Imports: graphics
License: GPL (>= 3)
LazyLoad: yes
Packaged: 2011-11-20 06:48:08 UTC; sfvlaxk
Repository: CRAN
Date/Publication: 2011-11-20 10:03:17

More information about AcceptanceSampling at CRAN
Permanent link

Package ALS (with last version 0.0.5) was removed from CRAN