Title: A package of funtions for computing wavelet filters, wavelet
transforms and multiresolution analyses
Description: This package contains functions for computing and plotting
discrete wavelet transforms (DWT) and maximal overlap discrete
wavelet transforms (MODWT), as well as their inverses.
Additionally, it contains functionality for computing and
plotting wavelet transform filters that are used in the above
decompositions as well as multiresolution analyses.
Author: Eric Aldrich
Maintainer: Eric Aldrich
Diff between wavelets versions 0.2-6 dated 2010-04-22 and 0.2-7 dated 2012-07-03
DESCRIPTION | 10 +++++----- MD5 |only NAMESPACE |only R/wt.filter.R | 1 + data/ecg.RData |binary data/nile.RData |binary data/ocean.RData |binary data/subtidal.RData |binary 8 files changed, 6 insertions(+), 5 deletions(-)
Title: support package for "Programming Graphical User Interfaces in R"
Description: sample code, appendices and functions for the text
Programming GUIs in R
Author: Michael Lawrence and John Verzani
Maintainer: John Verzani
Diff between ProgGUIinR versions 0.0-1 dated 2012-06-12 and 0.0-2 dated 2012-07-03
DESCRIPTION | 10 MD5 | 21 + NAMESPACE | 26 +- R/browseQtFiles.R | 520 ------------------------------------------------ R/browseRGtk2Files.R | 5 R/browseTclTkFiles.R | 3 R/browsegWidgetsFiles.R | 3 R/misc.R | 4 R/showGtkWidgetInfo.R | 2 inst/qt |only man/find_vars.Rd | 9 man/make_icon.Rd | 10 12 files changed, 50 insertions(+), 563 deletions(-)
Title: Lasso and elastic-net regularized generalized linear models
Description: Extremely efficient procedures for fitting the entire
lasso or elastic-net regularization path for linear regression,
logistic and multinomial regression models, poisson regression
and the Cox model. Two recent additions are the multiresponse
gaussian, and the grouped multinomial. The algorithm uses
cyclical coordinate descent in a pathwise fashion, as described
in the paper listed below.
Author: Jerome Friedman, Trevor Hastie, Rob Tibshirani
Maintainer: Trevor Hastie
Diff between glmnet versions 1.7.4 dated 2012-04-27 and 1.8 dated 2012-07-03
glmnet-1.7.4/glmnet/src/newGLMnet.f90 |only glmnet-1.8/glmnet/ChangeLog | 8 ++++++ glmnet-1.8/glmnet/DESCRIPTION | 15 ++++++------ glmnet-1.8/glmnet/MD5 | 33 ++++++++++++++++------------ glmnet-1.8/glmnet/NAMESPACE | 5 ++-- glmnet-1.8/glmnet/R/coefnorm.R |only glmnet-1.8/glmnet/R/cv.mrelnet.R |only glmnet-1.8/glmnet/R/getmin.R | 6 ++--- glmnet-1.8/glmnet/R/glmnet.R | 11 +++++++-- glmnet-1.8/glmnet/R/lognet.R | 4 +++ glmnet-1.8/glmnet/R/mrelnet.R |only glmnet-1.8/glmnet/R/plot.mrelnet.R |only glmnet-1.8/glmnet/R/plot.multnet.R | 14 +++++++++--- glmnet-1.8/glmnet/R/predict.mrelnet.R |only glmnet-1.8/glmnet/R/predict.multnet.R | 6 +++-- glmnet-1.8/glmnet/inst/doc/Coxnet.pdf |binary glmnet-1.8/glmnet/man/glmnet-internal.Rd | 3 ++ glmnet-1.8/glmnet/man/glmnet.Rd | 36 ++++++++++++++++++++++++------- glmnet-1.8/glmnet/man/plot.glmnet.Rd | 11 ++++++--- glmnet-1.8/glmnet/man/predict.glmnet.Rd | 1 glmnet-1.8/glmnet/src/newmultGLMnet.f90 |only 21 files changed, 109 insertions(+), 44 deletions(-)
Title: Multivariate Dependence with Copulas
Description: Classes (S4) of commonly used copulas including elliptical
(normal and t), Archimedean (Clayton, Gumbel, Frank, and
Ali-Mikhail-Haq), extreme value (Gumbel, Husler-Reiss,
Galambos, Tawn, and t-EV), and other families (Plackett and
Farlie-Gumbel-Morgenstern). Methods for density, distribution,
random number generation, bivariate dependence measures,
perspective and contour plots. Functions for fitting copula
models with variance estimate. Independence tests among random
variables and random vectors. Serial independence tests for
univariate and multivariate continuous time series.
Goodness-of-fit tests for copulas based on multipliers, the
parametric bootstrap with several transformation options.
Bivariate and multivariate tests of extreme-value dependence.
Bivariate tests of exchangeability. Now with former 'nacopula'
for working with nested Archimedean copulas. Specifically,
providing procedures for computing function values and cube
volumes, characteristics such as Kendall's tau and tail
dependence coefficients, efficient sampling algorithms, various
estimators, and goodness-of-fit tests. The package also
contains related univariate distributions and special functions
such as the Sibuya distribution, the polylogarithm, Stirling
and Eulerian numbers.
Author: Jun Yan
Maintainer: Martin Maechler
Diff between copula versions 0.99-2 dated 2012-05-30 and 0.99-4 dated 2012-07-03
copula-0.99-2/copula/tests/gof-ex.R |only copula-0.99-4/copula/ChangeLog | 10 copula-0.99-4/copula/DESCRIPTION | 21 - copula-0.99-4/copula/MD5 | 82 +++--- copula-0.99-4/copula/NAMESPACE | 36 +- copula-0.99-4/copula/R/K.R |only copula-0.99-4/copula/R/amhCopula.R | 7 copula-0.99-4/copula/R/asymCopula.R | 13 copula-0.99-4/copula/R/asymExplicitCopula.R | 4 copula-0.99-4/copula/R/aux-acopula.R | 27 +- copula-0.99-4/copula/R/fgmCopula.R | 4 copula-0.99-4/copula/R/fitCopula.R | 84 +++--- copula-0.99-4/copula/R/frankCopula.R | 7 copula-0.99-4/copula/R/galambosCopula.R | 6 copula-0.99-4/copula/R/gof.R | 269 +++++++++----------- copula-0.99-4/copula/R/gumbelCopula.R | 7 copula-0.99-4/copula/R/huslerReissCopula.R | 4 copula-0.99-4/copula/R/plackettCopula.R | 6 copula-0.99-4/copula/R/special-func.R | 8 copula-0.99-4/copula/R/tCopula.R | 2 copula-0.99-4/copula/R/tawnCopula.R | 5 copula-0.99-4/copula/R/tevCopula.R | 6 copula-0.99-4/copula/TODO | 9 copula-0.99-4/copula/demo/logL-vis.R | 113 +++++--- copula-0.99-4/copula/inst/Rsource/ggraph-graphics.R | 7 copula-0.99-4/copula/inst/Rsource/ggraph-tools.R | 8 copula-0.99-4/copula/inst/Rsource/wrapper.R | 55 ++-- copula-0.99-4/copula/inst/doc/Frank-Rmpfr.Rnw | 39 +- copula-0.99-4/copula/inst/doc/Frank-Rmpfr.pdf |binary copula-0.99-4/copula/inst/doc/nacopula-pkg.pdf |binary copula-0.99-4/copula/inst/doc/nacopula.bib | 16 + copula-0.99-4/copula/man/Bernoulli.Rd | 49 --- copula-0.99-4/copula/man/Copula.Rd | 2 copula-0.99-4/copula/man/K.Rd | 101 ++++++- copula-0.99-4/copula/man/emde.Rd | 4 copula-0.99-4/copula/man/enacopula.Rd | 11 copula-0.99-4/copula/man/evTestA.Rd | 14 - copula-0.99-4/copula/man/fitCopula.Rd | 117 +++++--- copula-0.99-4/copula/man/gnacopula.Rd | 78 +++-- copula-0.99-4/copula/man/gtrafo.Rd | 14 - copula-0.99-4/copula/man/timing.Rd | 4 copula-0.99-4/copula/tests/Stirling-etc.R | 71 ++++- copula-0.99-4/copula/tests/copula-play.R | 20 - 43 files changed, 809 insertions(+), 531 deletions(-)
Title: combined miRNA- and mRNA-testing
Description: combined miRNA- and mRNA-testing
Author: Stephan Artmann, Klaus Jung, Tim Beissbarth
Maintainer: Stephan Artmann
Diff between miRtest versions 1.3 dated 2012-07-02 and 1.4 dated 2012-07-03
DESCRIPTION | 10 +- MD5 | 10 +- R/miRtest.R | 3 inst/doc/miRtest.Rnw | 246 +++++++++++++++++++++++++-------------------------- inst/doc/miRtest.pdf |binary man/miRtest.Rd | 5 - 6 files changed, 137 insertions(+), 137 deletions(-)
Title: Robust Loss Development Using MCMC
Description: Loss Development for Insurance Triangles
Author: Christopher W. Laws, Frank A. Schmid
Maintainer: Christopher W. Laws
Diff between lossDev versions 3.0.0-1 dated 2011-08-06 and 3.0.0-3 dated 2012-07-03
lossDev-3.0.0-1/lossDev/man/AnnualAggLossDevModelInput-class.Rd |only lossDev-3.0.0-1/lossDev/man/AnnualAggLossDevModelOutput-class.Rd |only lossDev-3.0.0-1/lossDev/man/AnnualAggLossDevModelOutputWithZeros-class.Rd |only lossDev-3.0.0-1/lossDev/man/BreakAnnualAggLossDevModelInput-class.Rd |only lossDev-3.0.0-1/lossDev/man/BreakAnnualAggLossDevModelOutput-class.Rd |only lossDev-3.0.0-1/lossDev/man/BreakAnnualAggLossDevModelOutputWithZeros-class.Rd |only lossDev-3.0.0-1/lossDev/man/LossDevModelInput-class.Rd |only lossDev-3.0.0-1/lossDev/man/LossDevModelOutput-class.Rd |only lossDev-3.0.0-1/lossDev/man/NodeOutput-class.Rd |only lossDev-3.0.0-1/lossDev/man/QQPlot,AnnualAggLossDevModelOutput-method.Rd |only lossDev-3.0.0-1/lossDev/man/StandardAnnualAggLossDevModelInput-class.Rd |only lossDev-3.0.0-1/lossDev/man/StandardAnnualAggLossDevModelOutput-class.Rd |only lossDev-3.0.0-1/lossDev/man/StandardAnnualAggLossDevModelOutputWithZeros-class.Rd |only lossDev-3.0.0-1/lossDev/man/autoregressiveParameter,AnnualAggLossDevModelOutput-method.Rd |only lossDev-3.0.0-1/lossDev/man/calendarYearEffect,AnnualAggLossDevModelOutput-method.Rd |only lossDev-3.0.0-1/lossDev/man/calendarYearEffectAutoregressiveParameter,AnnualAggLossDevModelOutput-method.Rd |only lossDev-3.0.0-1/lossDev/man/calendarYearEffectErrorTracePlot,AnnualAggLossDevModelOutput-method.Rd |only lossDev-3.0.0-1/lossDev/man/calendarYearEffectErrors,AnnualAggLossDevModelOutput-method.Rd |only lossDev-3.0.0-1/lossDev/man/consumptionPath,BreakAnnualAggLossDevModelOutput-method.Rd |only lossDev-3.0.0-1/lossDev/man/consumptionPath,StandardAnnualAggLossDevModelOutput-method.Rd |only lossDev-3.0.0-1/lossDev/man/consumptionPathTracePlot,BreakAnnualAggLossDevModelOutput-method.Rd |only lossDev-3.0.0-1/lossDev/man/consumptionPathTracePlot,StandardAnnualAggLossDevModelOutput-method.Rd |only lossDev-3.0.0-1/lossDev/man/degreesOfFreedom,AnnualAggLossDevModelOutput-method.Rd |only 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lossDev-3.0.0-3/lossDev/man/cumulate.Rd | 14 lossDev-3.0.0-3/lossDev/man/decumulate.Rd | 14 lossDev-3.0.0-3/lossDev/man/degreesOfFreedom-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/degreesOfFreedom.Rd | 22 lossDev-3.0.0-3/lossDev/man/dot-dash-onLoad-dash-lossDev.Rd |only lossDev-3.0.0-3/lossDev/man/estimate-dot-priors.Rd |only lossDev-3.0.0-3/lossDev/man/exposureGrowth-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/exposureGrowth.Rd | 18 lossDev-3.0.0-3/lossDev/man/exposureGrowthAutoregressiveParameter-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/exposureGrowthAutoregressiveParameter.Rd | 18 lossDev-3.0.0-3/lossDev/man/exposureGrowthTracePlot-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/exposureGrowthTracePlot.Rd | 18 lossDev-3.0.0-3/lossDev/man/finalCumulativeDiff-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only 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lossDev-3.0.0-3/lossDev/man/getJagsInits-comma-AnnualLossDevModelInput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/getJagsInits-comma-BreakAnnualLossDevModelInput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/getJagsInits-comma-StandardAnnualLossDevModelInput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/getJagsInits.Rd | 16 lossDev-3.0.0-3/lossDev/man/getModelOutputNodes-comma-LossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/getModelOutputNodes.Rd | 16 lossDev-3.0.0-3/lossDev/man/getNonMissingIndexes.Rd | 16 lossDev-3.0.0-3/lossDev/man/getPaymentNoPaymentMatrix.Rd | 16 lossDev-3.0.0-3/lossDev/man/getTriDim-comma-AnnualAggLossDevModelInput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/getTriDim.Rd | 14 lossDev-3.0.0-3/lossDev/man/gompertz.Rd | 24 lossDev-3.0.0-3/lossDev/man/gompertzParameters-comma-AnnualAggLossDevModelOutputWithZeros-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/gompertzParameters.Rd | 32 lossDev-3.0.0-3/lossDev/man/lossDev.Rd | 20 lossDev-3.0.0-3/lossDev/man/lossDevOptions.Rd | 41 lossDev-3.0.0-3/lossDev/man/lossDevelopmentFactors-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/lossDevelopmentFactors.Rd | 32 lossDev-3.0.0-3/lossDev/man/makeBreakAnnualInput.Rd | 176 +-- lossDev-3.0.0-3/lossDev/man/makeStandardAnnualInput.Rd | 570 +++++----- lossDev-3.0.0-3/lossDev/man/mcmcACF-comma-BreakAnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/mcmcACF-comma-StandardAnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/mcmcACF.Rd | 18 lossDev-3.0.0-3/lossDev/man/meanExposureGrowth-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/meanExposureGrowth.Rd | 20 lossDev-3.0.0-3/lossDev/man/mutableState.Rd | 10 lossDev-3.0.0-3/lossDev/man/myLibPath.Rd | 12 lossDev-3.0.0-3/lossDev/man/myPkgName.Rd | 12 lossDev-3.0.0-3/lossDev/man/newNodeOutput.Rd | 18 lossDev-3.0.0-3/lossDev/man/numberOfKnots-comma-BreakAnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/numberOfKnots-comma-StandardAnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/numberOfKnots.Rd | 24 lossDev-3.0.0-3/lossDev/man/plot-dot-density-dot-and-dot-or-dot-trace.Rd |only lossDev-3.0.0-3/lossDev/man/plot-dot-top-dot-bottom.Rd |only lossDev-3.0.0-3/lossDev/man/plot-dot-top-dot-middle-dot-bottom.Rd |only lossDev-3.0.0-3/lossDev/man/plot-dot-trace-dot-plots.Rd |only lossDev-3.0.0-3/lossDev/man/predictedPayments-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/predictedPayments-comma-AnnualAggLossDevModelOutputWithZeros-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/predictedPayments.Rd | 40 lossDev-3.0.0-3/lossDev/man/probablityOfPayment-comma-AnnualAggLossDevModelOutputWithZeros-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/probablityOfPayment.Rd | 22 lossDev-3.0.0-3/lossDev/man/rateOfDecay-comma-BreakAnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/rateOfDecay-comma-StandardAnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/rateOfDecay.Rd | 26 lossDev-3.0.0-3/lossDev/man/rateOfDecayTracePlot-comma-BreakAnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/rateOfDecayTracePlot-comma-StandardAnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/rateOfDecayTracePlot.Rd | 20 lossDev-3.0.0-3/lossDev/man/runLossDevModel-comma-LossDevModelInput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/runLossDevModel.Rd | 16 lossDev-3.0.0-3/lossDev/man/scaleParameter-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/scaleParameter.Rd | 22 lossDev-3.0.0-3/lossDev/man/setGenericVerif.Rd | 24 lossDev-3.0.0-3/lossDev/man/skewnessParameter-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/skewnessParameter.Rd | 24 lossDev-3.0.0-3/lossDev/man/slot-comma-NodeOutput-comma-character-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/standardDeviationForScaleInnovation-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/standardDeviationForScaleInnovation.Rd | 24 lossDev-3.0.0-3/lossDev/man/standardDeviationOfCalendarYearEffect-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/standardDeviationOfCalendarYearEffect.Rd | 24 lossDev-3.0.0-3/lossDev/man/standardDeviationOfExposureGrowth-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/standardDeviationOfExposureGrowth.Rd | 18 lossDev-3.0.0-3/lossDev/man/standardDeviationVsDevelopmentTime-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/standardDeviationVsDevelopmentTime.Rd | 20 lossDev-3.0.0-3/lossDev/man/stochasticInflation-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/stochasticInflation.Rd | 32 lossDev-3.0.0-3/lossDev/man/stochasticInflationRhoParameter-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/stochasticInflationRhoParameter.Rd | 28 lossDev-3.0.0-3/lossDev/man/stochasticInflationStationaryMean-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/stochasticInflationStationaryMean.Rd | 28 lossDev-3.0.0-3/lossDev/man/tailFactor-comma-BreakAnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/tailFactor-comma-BreakAnnualAggLossDevModelOutputWithZeros-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/tailFactor-comma-StandardAnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/tailFactor-comma-StandardAnnualAggLossDevModelOutputWithZeros-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/tailFactor.Rd | 60 - lossDev-3.0.0-3/lossDev/man/triResi-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only lossDev-3.0.0-3/lossDev/man/triResi.Rd | 22 lossDev-3.0.0-3/lossDev/src/Makevars | 6 lossDev-3.0.0-3/lossDev/src/Makevars.in | 2 lossDev-3.0.0-3/lossDev/src/Makevars.win | 2 lossDev-3.0.0-3/lossDev/src/RJump.cpp | 2 lossDev-3.0.0-3/lossDev/src/RJump.h | 2 lossDev-3.0.0-3/lossDev/src/distributions/DSpline.cpp | 2 lossDev-3.0.0-3/lossDev/src/distributions/DSpline.h | 2 lossDev-3.0.0-3/lossDev/src/samplers/ExpandableArray.cpp | 2 lossDev-3.0.0-3/lossDev/src/samplers/ExpandableArray.h | 2 lossDev-3.0.0-3/lossDev/src/samplers/Knots.cpp | 2 lossDev-3.0.0-3/lossDev/src/samplers/Knots.h | 2 lossDev-3.0.0-3/lossDev/src/samplers/RJumpSpline.cpp | 2 lossDev-3.0.0-3/lossDev/src/samplers/RJumpSpline.h | 2 lossDev-3.0.0-3/lossDev/src/samplers/RJumpSplineFactory.cpp | 2 lossDev-3.0.0-3/lossDev/src/samplers/RJumpSplineFactory.h | 2 lossDev-3.0.0-3/lossDev/tests/TestFor-rjags.R |only 251 files changed, 1318 insertions(+), 1372 deletions(-)
Title: Rcpp bindings for the Boost Date_Time library
Description: This package provides R with access to Boost Date_Time
functionality by using Rcpp modules.
Currently only Date functionality is covered.
Boost header files are needed to build the package. Linking is optional
to provide supplementary date to/from strings conversion
functions.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel
Diff between RcppBDT versions 0.1.0 dated 2011-01-18 and 0.2.0 dated 2012-07-03
ChangeLog | 29 ++++++++++++++++++++++++ DESCRIPTION | 16 +++++++------ MD5 |only NAMESPACE | 5 +++- R/zzz.R | 59 +++++++++++++++++++++++++------------------------ inst/NEWS |only inst/NEWS.Rd |only inst/include/RcppBDT.h | 12 ++++----- man/RcppBDT-package.Rd | 5 ++-- man/bdt.Rd | 12 +++++---- src/Makevars.win | 10 ++++---- src/RcppBDT.cpp | 22 +++++++++--------- 12 files changed, 105 insertions(+), 65 deletions(-)
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner,
Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael
Lavine, Daniel C. Reuman
Maintainer: Aaron A. King
Diff between pomp versions 0.42-4 dated 2012-05-15 and 0.43-1 dated 2012-07-03
DESCRIPTION | 12 +-- MD5 | 60 ++++++++-------- R/builder.R | 109 +++++++++++++++++++++++++----- R/pomp-methods.R | 1 R/pomp.R | 58 ++++++++-------- R/traj-match.R | 6 - data/LondonYorke.rda |binary data/bbs.rda |binary data/blowflies.rda |binary data/dacca.rda |binary data/euler.sir.rda |binary data/gillespie.sir.rda |binary data/gompertz.rda |binary data/ou2.rda |binary data/ricker.rda |binary data/rw2.rda |binary data/verhulst.rda |binary demo/gompertz.R | 25 ++++-- demo/sir.R | 151 ++++++++++++++++++++++++++---------------- inst/ChangeLog | 54 +++++++++++++++ inst/NEWS | 16 ++++ inst/doc/pomp.bib | 40 +++++++++++ inst/include/pomp.h | 29 +++++++- man/builder.Rd | 12 +++ man/pomp.Rd | 15 ++-- man/traj-match.Rd | 11 ++- src/lookup_table.c | 5 - src/pomp.h | 29 +++++++- tests/bbs-trajmatch.R |only tests/bbs-trajmatch.Rout.save |only tests/sir.R | 9 +- tests/sir.Rout.save | 31 +++++--- 32 files changed, 496 insertions(+), 177 deletions(-)
Title: Modelling anthropogenic deforestation
Description: phcfM is an R package for modelling anthropogenic
deforestation. It was initially developed to obtain REDD
baseline scenarios of deforestation for the "programme
holistique de conservation des forets a Madagascar" (from which
the package is named after). Parameter inference is done in a
hierarchical Bayesian framework. Markov chains Monte Carlo
(MCMC) are coded in C++ using the Scythe statistical library to
maximize computation efficiency.
Author: Ghislain Vieilledent
Maintainer: Ghislain Vieilledent
Diff between phcfM versions 1.0 dated 2012-06-05 and 1.1 dated 2012-07-03
phcfM-1.0/phcfM/inst/phcfM.pdf |only phcfM-1.1/phcfM/COPYING | 904 +++++++++++++++++++++++++---------- phcfM-1.1/phcfM/DESCRIPTION | 22 phcfM-1.1/phcfM/LICENSE | 8 phcfM-1.1/phcfM/MD5 | 43 - phcfM-1.1/phcfM/R/zzz.R | 4 phcfM-1.1/phcfM/README.md | 12 phcfM-1.1/phcfM/inst/phcfM_1.1.pdf |only phcfM-1.1/phcfM/man/deforestation.Rd | 12 phcfM-1.1/phcfM/man/demography.Rd | 24 phcfM-1.1/phcfM/man/phcfM-package.Rd | 20 phcfM-1.1/phcfM/src/Makevars | 2 phcfM-1.1/phcfM/src/Makevars.in |only phcfM-1.1/phcfM/src/algorithm.h | 9 phcfM-1.1/phcfM/src/datablock.h | 76 ++ phcfM-1.1/phcfM/src/defs.h | 4 phcfM-1.1/phcfM/src/error.h | 76 ++ phcfM-1.1/phcfM/src/ide.h | 71 ++ phcfM-1.1/phcfM/src/la.h | 6 phcfM-1.1/phcfM/src/lapack.h | 4 phcfM-1.1/phcfM/src/matrix.h | 49 + phcfM-1.1/phcfM/src/optimize.h | 17 phcfM-1.1/phcfM/src/rng.h | 4 phcfM-1.1/phcfM/src/stat.h | 4 24 files changed, 996 insertions(+), 375 deletions(-)
Title: Joint meta-analysis of diagnostic test sensitivity and
specificity with or without a gold standard reference test
Description: This package implements a model for joint meta-analysis of
sensitivity and specificity of the diagnostic test under
evaluation, while taking into account the possibly imperfect
sensitivity and specificity of the reference test. This
hierarchical model accounts for both within and between study
variability. Estimation is carried out using a Bayesian
approach, implemented via a Gibbs sampler. The model can be
applied in situations where more than one reference test is
used in the selected studies.
Author: Ian Schiller and Nandini Dendukuri
Maintainer:
Diff between HSROC versions 2.0.5 dated 2012-03-26 and 2.1.0 dated 2012-07-03
DESCRIPTION | 10 MD5 | 26 + NEWS.txt | 52 +++ R/HSROC-internal.R | 251 +++++++++--------- R/HSROC.R | 9 R/HSROCSummary.R | 700 +++++++++++++++++++++++++++------------------------- R/files.remove.R | 46 +-- data/In.house.rda |binary data/MRI.rda |binary man/HSROC.Rd | 16 - man/HSROCSummary.Rd | 49 +++ man/simdata.Rd | 13 src/HSROC.cpp | 144 ++++++---- src/Makevars |only src/Makevars.win |only 15 files changed, 760 insertions(+), 556 deletions(-)
Title: Statistical inference of C- and D-vine copulas
Description: This package provides functions for statistical inference
of canonical vine (C-vine) and D-vine copulas. It contains
tools for bivariate exploratory data analysis and for bivariate
as well as vine copula selection. Models can be estimated
either sequentially or by joint maximum likelihood estimation.
Sampling algorithms and plotting methods are also included.
Data is assumed to lie in the unit hypercube (so-called copula
data).
Author: Ulf Schepsmeier, Eike Christian Brechmann
Maintainer: Ulf Schepsmeier
Diff between CDVine versions 1.1-8 dated 2012-07-02 and 1.1-9 dated 2012-07-03
CDVine.pdf |binary DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NAMESPACE | 2 +- inst/ChangeLog | 9 ++++++--- inst/doc/CDVine-package.pdf |binary inst/doc/CDVine-package.rnw | 8 ++++---- man/CDVine-package.Rd | 6 +++--- 8 files changed, 27 insertions(+), 24 deletions(-)
Title: create and investigate magic squares
Description: a collection of efficient, vectorized algorithms for the
creation and investigation of magic squares and hypercubes,
including a variety of functions for the manipulation and
analysis of arbitrarily dimensioned arrays. The package
includes methods for creating normal magic squares of any order
greater than 2. The ultimate intention is for the package to
be a computerized embodiment all magic square knowledge,
including direct numerical verification of properties of magic
squares (such as recent results on the determinant of
odd-ordered semimagic squares). Some antimagic functionality
is included. The package also serves as a rebuttal to the
often-heard comment "I thought R was just for statistics".
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin
Diff between magic versions 1.5-1 dated 2011-12-27 and 1.5-2 dated 2012-07-03
DESCRIPTION | 30 +++++++++++++++--------------- MD5 | 20 ++++++++++---------- R/magic.R | 8 ++++++-- data/Frankenstein.rda |binary data/Ollerenshaw.rda |binary data/cube2.rda |binary data/hendricks.rda |binary data/magiccubes.rda |binary data/perfectcube5.rda |binary data/perfectcube6.rda |binary inst/doc/magicpaper.pdf |binary 11 files changed, 31 insertions(+), 27 deletions(-)
Title: Goodness-of-fit functions for comparison of simulated and
observed hydrological time series
Description: S3 functions implementing both statistical and graphical
goodness-of-fit measures between observed and simulated values,
mainly oriented to be used during the calibration, validation,
and application of hydrological models. Missing values in
observed and/or simulated values can be removed before
computations. Comments / questions / collaboration of any kind
are very welcomed.
Author: Mauricio Zambrano-Bigiarini [aut, cre]
Maintainer: Mauricio Zambrano Bigiarini
Diff between hydroGOF versions 0.3-3 dated 2012-05-02 and 0.3-4 dated 2012-07-03
hydroGOF-0.3-3/hydroGOF/R/hydroGOF.R |only hydroGOF-0.3-4/hydroGOF/DESCRIPTION | 14 ++-- hydroGOF-0.3-4/hydroGOF/MD5 | 31 +++++----- hydroGOF-0.3-4/hydroGOF/NAMESPACE | 3 - hydroGOF-0.3-4/hydroGOF/NEWS | 35 ++++-------- hydroGOF-0.3-4/hydroGOF/R/VE.R |only hydroGOF-0.3-4/hydroGOF/R/ggof.R | 6 ++ hydroGOF-0.3-4/hydroGOF/R/gof.R | 29 +++++++--- hydroGOF-0.3-4/hydroGOF/R/plot2.R | 9 ++- hydroGOF-0.3-4/hydroGOF/R/valindex.R | 48 +++++++++++------ hydroGOF-0.3-4/hydroGOF/WhatsNew.txt | 22 +++++++ hydroGOF-0.3-4/hydroGOF/inst/doc/hydroGOF_Vignette.pdf |binary hydroGOF-0.3-4/hydroGOF/man/VE.Rd |only hydroGOF-0.3-4/hydroGOF/man/br2.Rd | 2 hydroGOF-0.3-4/hydroGOF/man/ggof.Rd | 24 ++++++-- hydroGOF-0.3-4/hydroGOF/man/gof.Rd | 23 ++++++-- hydroGOF-0.3-4/hydroGOF/man/hydroGOF-package.Rd | 27 ++++----- hydroGOF-0.3-4/hydroGOF/man/plot2.Rd | 6 ++ 18 files changed, 180 insertions(+), 99 deletions(-)
Title: Simulation of complex survival data
Description: Simulation of complex survival data
Author: David Mori�a, Centre Tecnol�gic de Nutrici� i Salut and Albert
Navarro, Universitat Aut�noma de Barcelona
Maintainer: David Mori�a
Diff between complex.surv.dat.sim versions 1.0 dated 2012-06-06 and 1.1 dated 2012-07-03
DESCRIPTION | 10 - MD5 | 28 ++-- R/mult.ev.cens.sim.R | 18 +- R/mult.ev.ncens.sim.R | 18 +- R/mult.ev.sim.R | 149 ++++++++++----------- R/print.summary.mult.ev.data.sim.R | 10 - R/print.summary.rec.ev.data.sim.R | 10 - R/rec.ev.sim.R | 147 ++++++++++----------- R/summary.mult.ev.data.sim.R | 57 ++++---- R/summary.rec.ev.data.sim.R | 88 ++++++++---- complex.surv.dat.sim-Ex.R | 6 man/accum.Rd | 130 +++++++++--------- man/complex.surv.dat.sim-package.Rd | 2 man/mult.ev.sim.Rd | 217 +++++++++++++++---------------- man/rec.ev.sim.Rd | 247 ++++++++++++++++++------------------ 15 files changed, 583 insertions(+), 554 deletions(-)
More information about complex.surv.dat.sim at CRAN
Permanent link
Title: analysis of complex survey samples
Description: Summary statistics, two-sample tests, generalised linear
models, cumulative link models, Cox models, loglinear models,
and general maximum pseudolikelihood estimation for multistage
stratified, cluster-sampled, unequally weighted survey samples.
Variances by Taylor series linearisation or replicate weights.
Post-stratification, calibration, and raking. Two-phase
subsampling designs. Graphics. Predictive margins by direct
standardization. PPS sampling without replacement. Principal
components, factor analysis.
Author: Thomas Lumley
Maintainer: Thomas Lumley
Diff between survey versions 3.28-1 dated 2012-05-24 and 3.28-2 dated 2012-07-03
DESCRIPTION | 6 ++-- MD5 | 28 ++++++++++---------- R/grake.R | 71 +++++++++++++++++++++++++++++++++++++++++++++++---- inst/CITATION | 4 +- inst/NEWS | 8 +++++ inst/doc/domain.pdf |binary inst/doc/epi.pdf |binary inst/doc/phase1.pdf |binary inst/doc/pps.pdf |binary inst/doc/survey.pdf |binary man/calibrate.Rd | 23 ++++++++++++++-- man/rake.Rd | 7 +++++ man/svyby.Rd | 2 - tests/nwts.Rout.save | 14 +++------- tests/pps.Rout.save | 14 +++------- 15 files changed, 131 insertions(+), 46 deletions(-)
Title: Methods for accessing huge amounts of data [DEPRECATED]
Description: THIS PACKAGE HAS BEEN DEPRECATED. Do not start building
new projects based on it. Cross-platform alternatives are the
following packages: bigmemory (CRAN), ff (CRAN), BufferedMatrix
(BioConductor). The main usage of it was inside the
aroma.affymetrix package. (The package currently provides a
class representing a matrix where the actual data is stored in
a binary format on the local file system. This way the size
limit of the data is set by the file system and not the
memory.)
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
Diff between R.huge versions 0.3.0 dated 2011-07-24 and 0.4.1 dated 2012-07-03
DESCRIPTION | 11 ++-- MD5 |only R/006.fixVarArgs.R | 16 +++++- R/999.NonDocumentedObjects.R | 2 R/AbstractFileArray.R | 88 ++++++++++++++++--------------------- R/seekCon.R |only R/zzz.R | 1 inst/NEWS | 13 +++++ man/AbstractFileArray.Rd | 2 man/FileMatrix.Rd | 2 man/FileVector.Rd | 2 man/Non-documented_objects.Rd | 2 man/as.vector.AbstractFileArray.Rd | 5 -- 13 files changed, 76 insertions(+), 68 deletions(-)
Title: MyEpisodes RSS/API functions
Description: Useful functions for accessing MyEpisodes feeds and
episode information as well as other tv episode related actions
through www.myepisodes.com
Author: Matt Malin
Maintainer: Matt Malin
Diff between myepisodes versions 1.0.0 dated 2012-02-18 and 1.1.1 dated 2012-07-03
DESCRIPTION | 11 ++-- MD5 | 21 ++++---- NAMESPACE | 2 R/myepisodes.R | 86 ++++++++++++++++++++++++++++++++-- README.md | 11 +++- inst/test_data/mock_mylist.xml | 4 - inst/tests/test_myepisodes.r | 8 ++- man/mark_episode_as_acquired.Rd |only man/mark_episode_as_watched.Rd |only man/show_info_from_xml.Rd | 2 man/summary_of_shows.Rd | 2 man/update_episode.Rd |only man/xml_shows_from_myepisodes_feed.Rd | 4 - 13 files changed, 123 insertions(+), 28 deletions(-)
Title: Markov Chain Monte Carlo
Description: functions for Markov chain Monte Carlo (MCMC).
Author: Charles J. Geyer
Maintainer: Charles J. Geyer
Diff between mcmc versions 0.8 dated 2010-06-23 and 0.9 dated 2012-07-03
mcmc-0.8/mcmc/data/foo.txt |only mcmc-0.8/mcmc/data/logit.txt |only mcmc-0.9/mcmc/.Rinstignore |only mcmc-0.9/mcmc/ChangeLog | 2 mcmc-0.9/mcmc/DESCRIPTION | 14 - mcmc-0.9/mcmc/MD5 |only mcmc-0.9/mcmc/NAMESPACE | 6 mcmc-0.9/mcmc/R/morph.R |only mcmc-0.9/mcmc/R/morph.metrop.R |only mcmc-0.9/mcmc/data/foo.txt.gz |only mcmc-0.9/mcmc/data/logit.txt.gz |only mcmc-0.9/mcmc/inst/doc/Makefile | 36 ++- mcmc-0.9/mcmc/inst/doc/bfst.Rnw | 53 +++-- mcmc-0.9/mcmc/inst/doc/bfst.pdf |binary mcmc-0.9/mcmc/inst/doc/bfst.tex | 277 +++++++++++---------------- mcmc-0.9/mcmc/inst/doc/bfst1.rda |only mcmc-0.9/mcmc/inst/doc/bfst2.rda |only mcmc-0.9/mcmc/inst/doc/debug.pdf |binary mcmc-0.9/mcmc/inst/doc/debug.tex | 4 mcmc-0.9/mcmc/inst/doc/demo.pdf |binary mcmc-0.9/mcmc/inst/doc/demo.tex | 167 +++++++++------- mcmc-0.9/mcmc/inst/doc/metrop.pdf |binary mcmc-0.9/mcmc/inst/doc/morph.Rnw |only mcmc-0.9/mcmc/inst/doc/morph.pdf |only mcmc-0.9/mcmc/inst/doc/morph.tex |only mcmc-0.9/mcmc/inst/doc/morph1.rda |only mcmc-0.9/mcmc/inst/doc/morph2.rda |only mcmc-0.9/mcmc/inst/doc/temper.pdf |binary mcmc-0.9/mcmc/man/initseq.Rd | 2 mcmc-0.9/mcmc/man/metrop.Rd | 25 ++ mcmc-0.9/mcmc/man/morph.Rd |only mcmc-0.9/mcmc/man/morph.metrop.Rd |only mcmc-0.9/mcmc/tests/circle.Rout.save | 17 - mcmc-0.9/mcmc/tests/initseq.Rout.save | 8 mcmc-0.9/mcmc/tests/isotropic.R |only mcmc-0.9/mcmc/tests/isotropic.Rout.save |only mcmc-0.9/mcmc/tests/logit.Rout.save | 10 mcmc-0.9/mcmc/tests/logitbat.Rout.save | 10 mcmc-0.9/mcmc/tests/logitfun.Rout.save | 10 mcmc-0.9/mcmc/tests/logitfunarg.Rout.save | 10 mcmc-0.9/mcmc/tests/logitidx.Rout.save | 10 mcmc-0.9/mcmc/tests/logitlogidx.Rout.save | 10 mcmc-0.9/mcmc/tests/logitmat.Rout.save | 5 mcmc-0.9/mcmc/tests/logitnegidx.Rout.save | 10 mcmc-0.9/mcmc/tests/logitsub.Rout.save | 10 mcmc-0.9/mcmc/tests/logitsubbat.Rout.save | 10 mcmc-0.9/mcmc/tests/logitvec.Rout.save | 10 mcmc-0.9/mcmc/tests/morph.R |only mcmc-0.9/mcmc/tests/morph.Rout.save |only mcmc-0.9/mcmc/tests/morph.metrop.R |only mcmc-0.9/mcmc/tests/morph.metrop.Rout.save |only mcmc-0.9/mcmc/tests/morphtoo.R |only mcmc-0.9/mcmc/tests/morphtoo.Rout.save |only mcmc-0.9/mcmc/tests/saveseed.Rout.save | 5 mcmc-0.9/mcmc/tests/saveseedmorph.R |only mcmc-0.9/mcmc/tests/saveseedmorph.Rout.save |only mcmc-0.9/mcmc/tests/temp-par-witch.R | 2 mcmc-0.9/mcmc/tests/temp-par-witch.Rout.save | 46 ++-- mcmc-0.9/mcmc/tests/temp-par.Rout.save | 13 - mcmc-0.9/mcmc/tests/temp-ser-witch.Rout.save | 5 mcmc-0.9/mcmc/tests/temp-ser.Rout.save | 13 - 61 files changed, 448 insertions(+), 352 deletions(-)
Title: Methods that apply to rows and columns of a matrix
Description: This packages provides methods operating on rows and
columns of matrices. The objective is to have all methods
being optimized for speed and memory consumption.
Author: Henrik Bengtsson, Hector Corrada Bravo, Robert Gentleman,
Harris Jaffee
Maintainer: Henrik Bengtsson
Diff between matrixStats versions 0.5.0 dated 2012-05-06 and 0.5.2 dated 2012-07-03
DESCRIPTION | 14 ++---- MD5 | 13 +++--- NAMESPACE | 1 R/rowProds.R | 96 ++++++++++++++++++++++++++++++++++----------- inst/NEWS | 12 +++++ man/matrixStats-package.Rd | 2 man/rowProds.Rd | 8 ++- src/.HIDE |only tests/rowProds.R |only 9 files changed, 105 insertions(+), 41 deletions(-)
Title: Joint Modeling of Longitudinal and Survival Data
Description: Shared parameter models for the joint modeling of
longitudinal and time-to-event data.
Author: Dimitris Rizopoulos
Maintainer: Dimitris Rizopoulos
Diff between JM versions 0.9-3 dated 2012-03-21 and 1.0-0 dated 2012-07-03
DESCRIPTION | 13 ++++---- MD5 | 68 +++++++++++++++++++++++++------------------- NAMESPACE | 14 ++++++--- R/coef.summary.jointModel.R |only R/cumHaz.R | 42 ++++++++++++++++++--------- R/dbs.R |only R/dns.R |only R/fitted.jointModel.R | 8 ++--- R/ibs.R |only R/ins.R |only R/jointModel.R | 9 +++++ R/makepredictcall.dbs.R |only R/makepredictcall.dns.R |only R/makepredictcall.ibs.R |only R/makepredictcall.ins.R |only R/plot.survfitJM.R | 6 +-- data/aids.id.rda |binary data/aids.rda |binary data/pbc2.id.rda |binary data/pbc2.rda |binary data/prothro.rda |binary data/prothros.rda |binary inst/NEWS | 14 +++++++++ man/DerivIntSplines.Rd |only man/JM.Rd | 17 ++++++----- man/anova.Rd | 3 + man/crLong.Rd | 3 + man/dynC.Rd | 3 + man/fitted.Rd | 3 + man/jointModel.Rd | 19 +++++++----- man/piecewiseExp.ph.Rd | 5 +++ man/plot-rocJM.Rd | 3 + man/plot-survfitJM.Rd | 12 +++++-- man/plot.Rd | 8 +++++ man/predict.Rd | 5 +++ man/ranef.Rd | 5 +++ man/residuals.Rd | 3 + man/rocJM.Rd | 3 + man/survfitJM.Rd | 7 +++- man/wald.strata.Rd | 5 +++ 40 files changed, 199 insertions(+), 79 deletions(-)
Title: Functional Data Analysis and Utilities for Statistical Computing
(fda.usc)
Description: This package implements functional data methods.
Author: Febrero-Bande, M. and Oviedo de la Fuente, M.
Maintainer: Oviedo de la Fuente, M.
Diff between fda.usc versions 0.9.8 dated 2012-06-07 and 0.9.8.1 dated 2012-07-03
fda.usc-0.9.8.1/fda.usc/DESCRIPTION | 8 fda.usc-0.9.8.1/fda.usc/MD5 | 117 +-- fda.usc-0.9.8.1/fda.usc/NAMESPACE | 18 fda.usc-0.9.8.1/fda.usc/NEWS | 13 fda.usc-0.9.8.1/fda.usc/R/CV.S.R | 1 fda.usc-0.9.8.1/fda.usc/R/GCV.S.R | 1 fda.usc-0.9.8.1/fda.usc/R/S.KNN.R | 3 fda.usc-0.9.8.1/fda.usc/R/S.LLR.R | 9 fda.usc-0.9.8.1/fda.usc/R/S.NW.R | 3 fda.usc-0.9.8.1/fda.usc/R/classif.gkam.R |only fda.usc-0.9.8.1/fda.usc/R/cond.F.R | 3 fda.usc-0.9.8.1/fda.usc/R/create.fdata.basis.R | 12 fda.usc-0.9.8.1/fda.usc/R/depth.FM.r | 3 fda.usc-0.9.8.1/fda.usc/R/depth.RP.r | 3 fda.usc-0.9.8.1/fda.usc/R/depth.RPD.r | 3 fda.usc-0.9.8.1/fda.usc/R/depth.mode.r | 6 fda.usc-0.9.8.1/fda.usc/R/dfv.test.R |only fda.usc-0.9.8.1/fda.usc/R/fdata.deriv.R | 13 fda.usc-0.9.8.1/fda.usc/R/fdata2fd.R | 6 fda.usc-0.9.8.1/fda.usc/R/flm.Ftest.R |only fda.usc-0.9.8.1/fda.usc/R/flm.test.R | 196 +++--- fda.usc-0.9.8.1/fda.usc/R/flm.test.auxiliary.functions.R | 2 fda.usc-0.9.8.1/fda.usc/R/fregre.basis.R | 44 + fda.usc-0.9.8.1/fda.usc/R/fregre.basis.cv.R | 6 fda.usc-0.9.8.1/fda.usc/R/fregre.gkam.r |only fda.usc-0.9.8.1/fda.usc/R/fregre.glm.R | 12 fda.usc-0.9.8.1/fda.usc/R/fregre.lm.R | 6 fda.usc-0.9.8.1/fda.usc/R/fregre.pc.R | 14 fda.usc-0.9.8.1/fda.usc/R/fregre.pc.cv.R | 2 fda.usc-0.9.8.1/fda.usc/R/fregre.pls.R | 9 fda.usc-0.9.8.1/fda.usc/R/fregre.pls.cv.R | 2 fda.usc-0.9.8.1/fda.usc/R/min.np.r | 1 fda.usc-0.9.8.1/fda.usc/R/norm.fdata.r | 9 fda.usc-0.9.8.1/fda.usc/R/omit.fdata.R | 2 fda.usc-0.9.8.1/fda.usc/R/outliers.thres.lrt.r | 3 fda.usc-0.9.8.1/fda.usc/R/predict.classif.R | 12 fda.usc-0.9.8.1/fda.usc/R/predict.fregre.fd.R | 5 fda.usc-0.9.8.1/fda.usc/R/predict.fregre.gkam.R |only fda.usc-0.9.8.1/fda.usc/R/semimetric.NPFDA.r | 9 fda.usc-0.9.8.1/fda.usc/R/summary.fregre.fd.r | 10 fda.usc-0.9.8.1/fda.usc/man/PCvM.statistic.Rd | 140 ++-- fda.usc-0.9.8.1/fda.usc/man/classif.gkam.Rd |only fda.usc-0.9.8.1/fda.usc/man/classif.glm.Rd | 2 fda.usc-0.9.8.1/fda.usc/man/classif.gsam.Rd | 2 fda.usc-0.9.8.1/fda.usc/man/create.fdata.basis.Rd | 5 fda.usc-0.9.8.1/fda.usc/man/dfv.test.Rd |only fda.usc-0.9.8.1/fda.usc/man/fda.usc-package.Rd | 14 fda.usc-0.9.8.1/fda.usc/man/fda.usc.internal.Rd | 1 fda.usc-0.9.8.1/fda.usc/man/fdata2fd.Rd | 3 fda.usc-0.9.8.1/fda.usc/man/flm.Ftest.Rd |only fda.usc-0.9.8.1/fda.usc/man/flm.test.Rd | 454 +++++++-------- fda.usc-0.9.8.1/fda.usc/man/fregre.gkam.Rd |only fda.usc-0.9.8.1/fda.usc/man/fregre.gsam.Rd | 10 fda.usc-0.9.8.1/fda.usc/man/predict.fregre.gkam.Rd |only fda.usc-0.9.8.1/fda.usc/man/predict.fregre.gsam.Rd | 25 fda.usc-0.9.8.1/fda.usc/man/predict.fregre.lm.Rd | 24 fda.usc-0.9.8.1/fda.usc/man/rber.gold.Rd | 102 +-- fda.usc-0.9.8.1/fda.usc/man/summary.classif.Rd | 6 fda.usc-0.9.8.1/fda.usc/man/summary.fregre.gkam.Rd |only fda.usc-0.9.8.1/fda.usc/src/Adot.f90 |only fda.usc-0.9.8.1/fda.usc/src/PCvM_statistic.f90 | 51 - fda.usc-0.9.8/fda.usc/NEWS.LOG |only fda.usc-0.9.8/fda.usc/R/classif.kgam.R |only fda.usc-0.9.8/fda.usc/R/fregre.kgam.r |only fda.usc-0.9.8/fda.usc/R/predict.fregre.kgam.R |only fda.usc-0.9.8/fda.usc/man/classif.kgam.Rd |only fda.usc-0.9.8/fda.usc/man/fregre.kgam.Rd |only fda.usc-0.9.8/fda.usc/man/predict.fregre.kgam.Rd |only fda.usc-0.9.8/fda.usc/man/summary.fregre.kgam.Rd |only fda.usc-0.9.8/fda.usc/src/Aijr.f90 |only 70 files changed, 742 insertions(+), 663 deletions(-)
Title: A probe-level data file format used by aroma.affymetrix
[DEPRECATED]
Description: THIS PACKAGE HAS BEEN DEPRECATED. (The (in-house) APD file
format was initially developed to store Affymetrix probe-level
data, e.g. normalized CEL intensites. Chip types can be added
to APD file and similar to methods in the affxparser package,
this package provides methods to read APDs organized by units
(probesets). In addition, the probe elements can be arranged
optimally such that the elements are guaranteed to be read in
order when, for instance, data is read unit by unit. This
speeds up the read substantially. This package is supporting
the Aroma framework and should not be used elsewhere.)
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
Diff between aroma.apd versions 0.2.2 dated 2012-04-04 and 0.2.3 dated 2012-07-03
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- inst/NEWS | 4 ++++ 3 files changed, 12 insertions(+), 8 deletions(-)
Title: Connects to Anametrix
Description: Bidirectional connector to Anametrix API.
Author: Roman Jugai
Maintainer: Roman Jugai
Diff between anametrix versions 0.2 dated 2012-06-07 and 1.3 dated 2012-07-03
DESCRIPTION | 11 - MD5 | 10 R/getAxDataset.R | 514 +++++++++++++++++++++++------------------------ R/uploadData.R |only man/anametrix-package.Rd | 14 - man/getAxDataset.Rd | 13 + man/uploadData.Rd |only 7 files changed, 283 insertions(+), 279 deletions(-)