Mon, 23 Jul 2012

Package parmigene updated to version 1.0.2 with previous version 1.0.1 dated 2012-07-18

Title: Parallel Mutual Information estimation for Gene Network reconstruction.
Description: The package provides a parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks.
Author: Gabriele Sales , Chiara Romualdi
Maintainer: Gabriele Sales

Diff between parmigene versions 1.0.1 dated 2012-07-18 and 1.0.2 dated 2012-07-23

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Package ODB updated to version 1.1.1 with previous version 1.1.0 dated 2012-07-22

Title: Open Document Databases (.odb) management
Description: This package provides functions to create, connect, update and query HSQL databases embedded in Open Document Databases (.odb) files, as OpenOffice and LibreOffice do.
Author: Sylvain Mareschal
Maintainer: Sylvain Mareschal

Diff between ODB versions 1.1.0 dated 2012-07-22 and 1.1.1 dated 2012-07-23

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Package LogicReg updated to version 1.5.3 with previous version 1.5.2 dated 2012-06-13

Title: Logic Regression
Description: Routines for Logic Regression
Author: Charles Kooperberg and Ingo Ruczinski
Maintainer: Charles Kooperberg

Diff between LogicReg versions 1.5.2 dated 2012-06-13 and 1.5.3 dated 2012-07-23

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Package nullabor updated to version 0.2.1 with previous version 0.2 dated 2012-05-08

Title: Tools for graphical inference
Description: Generate null datasets and null plots with ease.
Author: Hadley Wickham
Maintainer: Hadley Wickham

Diff between nullabor versions 0.2 dated 2012-05-08 and 0.2.1 dated 2012-07-23

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Package penDvine updated to version 0.2 with previous version 0.1 dated 2012-07-16

Title: Flexible Pair-Copula Estimation in D-vines with Penalized Splines
Description: Flexible Pair-Copula Estimation in D-vines with Penalized Splines.
Author: Christian Schellhase
Maintainer: Christian Schellhase

Diff between penDvine versions 0.1 dated 2012-07-16 and 0.2 dated 2012-07-23

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Package MSBVAR updated to version 0.7-0 with previous version 0.6-0 dated 2011-02-01

Title: Markov-Switching, Bayesian, Vector Autoregression Models
Description: Provides methods for estimating frequentist and Bayesian Vector Autoregression (VAR) models and Markov-switching Bayesian VAR (MSBVAR). Functions for reduced form and structural VAR models are also available. Includes methods for the generating posterior inferences for these models, forecasts, impulse responses (using likelihood-based error bands), and forecast error decompositions. Also includes utility functions for plotting forecasts and impulse responses, and generating draws from Wishart and singular multivariate normal densities. Current version includes functionality to build and evaluate models with Markov switching.
Author: Patrick T. Brandt, with contributions from W. Ryan Davis
Maintainer: Patrick T. Brandt

Diff between MSBVAR versions 0.6-0 dated 2011-02-01 and 0.7-0 dated 2012-07-23

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Package HSROC updated to version 2.1.4 with previous version 2.1.3 dated 2012-07-11

Title: Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test
Description: This package implements a model for joint meta-analysis of sensitivity and specificity of the diagnostic test under evaluation, while taking into account the possibly imperfect sensitivity and specificity of the reference test. This hierarchical model accounts for both within and between study variability. Estimation is carried out using a Bayesian approach, implemented via a Gibbs sampler. The model can be applied in situations where more than one reference test is used in the selected studies.
Author: Ian Schiller and Nandini Dendukuri
Maintainer: Ian Schiller

Diff between HSROC versions 2.1.3 dated 2012-07-11 and 2.1.4 dated 2012-07-23

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Package RcppGSL updated to version 0.2.0 with previous version 0.1.1 dated 2011-04-06

Title: Rcpp integration for GNU GSL vectors and matrices
Description: Rcpp integration for GNU GSL vectors and matrices The GNU Scientific Library (GSL) is a collection of numerical routines for scientific computing. It is particularly useful for C and C++ programs as it provides a standard C interface to a wide range of mathematical routines such as special functions, permutations, combinations, fast fourier transforms, eigensystems, random numbers, quadrature, random distributions, quasi-random sequences, Monte Carlo integration, N-tuples, differential equations, simulated annealing, numerical differentiation, interpolation, series acceleration, Chebyshev approximations, root-finding, discrete Hankel transforms physical constants, basis splines and wavelets. There are over 1000 functions in total with an extensive test suite. The RcppGSL package provides an easy-to-use interface between GSL data structures and R using concepts from Rcpp which is itself a package that eases the interfaces between R and C++. This package also serves as a prime example of how to build a package that uses Rcpp to connect to anoother third-party library. The autoconf script, inline plugin and example package can all be used as a stanza to write a similar package against another library.
Author: Romain Francois and Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel

Diff between RcppGSL versions 0.1.1 dated 2011-04-06 and 0.2.0 dated 2012-07-23

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Package rattle updated to version 2.6.20 with previous version 2.6.19 dated 2012-07-04

Title: Graphical user interface for data mining in R
Description: Rattle (the R Analytic Tool To Learn Easily) provides a Gnome (RGtk2) based interface to R functionality for data mining. The aim is to provide a simple and intuitive interface that allows a user to quickly load data from a CSV file (or via ODBC), transform and explore the data, build and evaluate models, and export models as PMML (predictive modelling markup language) or as scores. All of this with knowing little about R. All R commands are logged and commented through the log tab. Thus they are available to the user as a script file or as an aide for the user to learn R or to copy-and-paste directly into R itself. Rattle also exports a number of utility functions and the graphical user interface, invoked as rattle(), does not need to be run to deploy these.
Author: Graham Williams
Maintainer: Graham Williams

Diff between rattle versions 2.6.19 dated 2012-07-04 and 2.6.20 dated 2012-07-23

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Package GGEBiplotGUI updated to version 1.0-3 with previous version 1.0-2 dated 2012-05-03

Title: GGEBiplotGUI: Interactive GGE Biplots in R
Description: A GUI with which to construct and interact with GGE biplots.
Author: Elisa Frutos Bernal , Purificacion Galindo Villardon
Maintainer: Elisa Frutos Bernal

Diff between GGEBiplotGUI versions 1.0-2 dated 2012-05-03 and 1.0-3 dated 2012-07-23

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Package cheddar updated to version 0.1-614 with previous version 0.1-613 dated 2012-07-17

Title: Analysis and visualisation of ecological communities
Description: Cheddar provides a flexible, extendable representation of an ecological community and a range of functions for analysis and visualisation, focusing on food web, body mass and numerical abundance data. It also allows inter-web comparisons such as examining changes in community structure over environmental, temporal or spatial gradients.
Author: Lawrence Hudson with contributions from Dan Reuman and Rob Emmerson
Maintainer: Lawrence Hudson

Diff between cheddar versions 0.1-613 dated 2012-07-17 and 0.1-614 dated 2012-07-23

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New package datamerge with initial version 1.0-1
Encoding: UTF-8
Package: datamerge
Type: Package
Title: Merging of overlapping and inconsistent data
Version: 1.0-1
Date: 2012-07-23
Author: Christofer Backlin
Maintainer: Christofer Backlin
Depends: xtermStyle
Description: This package is designed to simplify the problem of combining overlapping and/or inconsistent data into a single set.
License: GPL (>= 2)
LazyLoad: yes
Collate: 'datamerge-package.R' 'datamerge.R'
Packaged: 2012-07-23 07:40:22 UTC; christofer
Repository: CRAN
Date/Publication: 2012-07-23 07:59:38

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Package rjson updated to version 0.2.9 with previous version 0.2.8 dated 2012-03-19

Title: JSON for R
Description: Converts R object into JSON objects and vice-versa
Author: Alex Couture-Beil
Maintainer: Alex Couture-Beil

Diff between rjson versions 0.2.8 dated 2012-03-19 and 0.2.9 dated 2012-07-23

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Package MPTinR updated to version 0.9.4 with previous version 0.8.10 dated 2012-04-19

Title: Analyze Multinomial Processing Tree Models
Description: MPTinR provides a user-friendly way for the analysis of multinomial processing tree (MPT) models (e.g., Riefer, D. M., and Batchelder, W. H. [1988]. Multinomial modeling and the measurement of cognitive processes. Psychological Review, 95, 318-339) for single and multiple datasets. The main functions perform model fitting and model selection. Model selection can be done using AIC, BIC, or the Fisher Information Approximation (FIA) a measure based on the Minimum Description Length (MDL) framework. The model and restrictions can specified in external files or within an R script in an intuitive syntax. The 'classical' .EQN file format for model files is also supported. Besides MPTs, MPTinR can fit a wide variety of other cognitive models such as SDT models (see fit.model). MPTinR supports multicore fitting using the snowfall package. MPTinR can generate data generating from a model for e.g., parametric bootstrap.
Author: Henrik Singmann and David Kellen
Maintainer: Henrik Singmann

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Package forecast updated to version 3.24 with previous version 3.23 dated 2012-07-18

Title: Forecasting functions for time series and linear models
Description: Methods and tools for displaying and analysing univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling.
Author: Rob J Hyndman with contributions from Slava Razbash and Drew Schmidt
Maintainer: Rob J Hyndman

Diff between forecast versions 3.23 dated 2012-07-18 and 3.24 dated 2012-07-23

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Package faoutlier updated to version 0.3.0 with previous version 0.2.3 dated 2012-06-06

Title: Influential case detection methods for factor analysis and SEM
Description: Tools for detecting and summarize influential cases that can affect exploratory and confirmatory factor analysis models as well as structural equation models more generally.
Author: Phil Chalmers
Maintainer: Phil Chalmers

Diff between faoutlier versions 0.2.3 dated 2012-06-06 and 0.3.0 dated 2012-07-23

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 R/LD.R                       |  312 +++++++++---------
 R/forward.search.R           |  744 +++++++++++++++++++++----------------------
 R/gCD.R                      |  358 ++++++++++----------
 R/obs.resid.R                |   20 -
 R/robustMD.R                 |   16 
 data/holzinger.RData         |binary
 data/holzinger.outlier.RData |binary
 man/LD.Rd                    |   14 
 man/forward.search.Rd        |   16 
 man/gCD.Rd                   |    9 
 man/obs.resid.Rd             |   10 
 man/robustMD.Rd              |   14 
 test/test.R                  |  264 +++++++--------
 16 files changed, 957 insertions(+), 896 deletions(-)

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New package FindAllRoots with initial version 1.0
Package: FindAllRoots
Type: Package
Title: Find all root(s) of the equation and Find root(s) of the equation by dichotomy
Version: 1.0
Date: 2012-07-13
Author: Bingpei Wu & Jiajun He & Sijie Chen & Yangyang Liu
Maintainer: Bingpei Wu
Description: Find all root(s) of the equation,including complex roots;Find root(s) of the equation by dichotomy.Besides,in dichotomy, more than one interval can be given at a time.
License: GPL (>= 2)
Packaged: 2012-07-23 04:56:37 UTC; Administrator
Repository: CRAN
Date/Publication: 2012-07-23 05:40:17

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Package GOSim (with last version 1.2.7.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-01-30 1.2.7.1
2012-01-27 1.2.6
2011-04-27 1.2.5
2010-10-04 1.2.4
2010-06-08 1.2.3
2010-05-10 1.2.2
2010-05-10 1.2.2.1
2010-01-22 1.2.1.1
2010-01-14 1.2.1.0
2009-09-10 1.2
2008-12-04 1.1.5.4
2008-12-01 1.1.5.3
2008-11-04 1.1.5.2
2008-09-15 1.1.5.1
2008-08-26 1.1.5.0
2008-08-14 1.1.4.2
2008-07-08 1.1.4.1
2008-07-05 1.1.4.0
2008-05-27 1.1.3.2
2008-03-12 1.1.3.1
2007-12-10 1.1.2
2007-12-07 1.1
2007-12-07 1.1.1
2007-10-12 1.0.3
2007-07-10 1.0.2
2007-06-18 1.0.1

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Package DOSim (with last version 2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-02-13 2.2
2011-08-10 2.1
2010-08-07 2.0
2010-07-24 1.2
2010-06-21 1.1
2010-04-28 1.0

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