Tue, 24 Jul 2012

Package SKAT updated to version 0.77 with previous version 0.76 dated 2012-06-27

Title: SNP-set (Sequence) Kernel Association Test
Description: Kernel based SNP set test
Author: Seunggeun Lee, Larisa Miropolsky and Micheal Wu
Maintainer: Seunggeun (Shawn) Lee

Diff between SKAT versions 0.76 dated 2012-06-27 and 0.77 dated 2012-07-24

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New package phonTools with initial version 0.1-1
Package: phonTools
Title: A collection of functions useful for phonetics work.
Version: 0.1-1
Date: 2012-06-22
Author: Santiago Barreda
Maintainer: Santiago Barreda
Depends: R (>= 2.15)
Description: The functions contained in this package are intended to facilitate the organization, display, and analysis of the sorts of data frequently encountered in phonetics research and experimentation.
License: GPL (>= 2)
Packaged: 2012-07-24 19:34:58 UTC; santiago
Repository: CRAN
Date/Publication: 2012-07-24 18:46:59

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New package mcr with initial version 1.1
Package: mcr
Version: 1.1
Date: 2012-07-23
Title: Method Comparison Regression
Author: Ekaterina Manuilova Andre Schuetzenmeister Fabian Model
Maintainer: Fabian Model
Depends: R (>= 2.11.1), methods
Description: This package provides regression methods to quantify the relation between two measurement methods. In particular it addresses regression problems with errors in both variables and without repeated measurements. It implements the CLSI recommendations for analytical method comparison and bias estimation using patient samples.
License: GPL (>= 3)
Collate: "mcrMisc.r" "mcLinReg.r" "mcDeming.r" "mcWDeming.r" "mcPaBaLarge.r" "mcPaBa.r" "mcCalcCI.r" "mcCalcTstar.r" "mcBootstrap.r" "MCResultMethods.r" "MCResult.r" "MCResultAnalyticalMethods.r" "MCResultAnalytical.r" "MCResultJackknifeMethods.r" "MCResultJackknife.r" "MCResultResamplingMethods.r" "MCResultResampling.r" "MCResultBCaMethods.r" "MCResultBCa.r" "mcrInterface.r" "mcrCompareFit.r" "mcrIncludeLegend.r" "zzz.r"
Packaged: 2012-07-24 17:48:31 UTC; modelf
Repository: CRAN
Date/Publication: 2012-07-24 18:35:07

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Package gstat updated to version 1.0-13 with previous version 1.0-12 dated 2012-06-22

Title: spatial and spatio-temporal geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point or block (co)kriging, sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.
Author: Edzer Pebesma and others
Maintainer: Edzer Pebesma

Diff between gstat versions 1.0-12 dated 2012-06-22 and 1.0-13 dated 2012-07-24

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New package rrcovHD with initial version 0.2-00
Package: rrcovHD
Date: 2012-07-24
Title: Robust multivariate Methods for High Dimensional Data
Version: 0.2-00
Author: Valentin Todorov
Description: Robust multivariate methods for high dimensional data: outlier detection, PCA, PLS, classification
Maintainer: Valentin Todorov
Depends: methods, rrcov, pls, spls
Imports:
LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
Packaged: 2012-07-23 23:42:58 UTC; Share
Repository: CRAN
Date/Publication: 2012-07-24 16:48:11

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Package plgp updated to version 1.1-5 with previous version 1.1-4 dated 2012-01-21

Title: Particle Learning of Gaussian Processes
Description: Sequential Monte Carlo inference for fully Bayesian Gaussian process (GP) regression and classification models by particle learning (PL). The sequential nature of inference and the active learning (AL) hooks provided facilitate thrifty sequential design (by entropy) and optimization (by improvement) for classification and regression models, respectively. This package essentially provides a generic PL interface, and functions (arguments to the interface) which implement the GP models and AL heuristics. Functions for a special, linked, regression/classification GP model and an integrated expected conditional improvement (IECI) statistic is provides for optimization in the presence of unknown constraints. Separable and isotropic Gaussian, and single-index correlation functions are supported. See the examples section of ?plgp and demo(package="plgp") for an index of demos
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy

Diff between plgp versions 1.1-4 dated 2012-01-21 and 1.1-5 dated 2012-07-24

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Package coda updated to version 0.15-2 with previous version 0.15-1 dated 2012-07-18

Title: Output analysis and diagnostics for MCMC
Description: Output analysis and diagnostics for Markov Chain Monte Carlo simulations.
Author: Martyn Plummer [aut, cre, trl], Nicky Best [aut], Kate Cowles [aut], Karen Vines [aut], Deepayan Sarkar [aut], Russell Almond [ctb]
Maintainer: Martyn Plummer

Diff between coda versions 0.15-1 dated 2012-07-18 and 0.15-2 dated 2012-07-24

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Package BRugs updated to version 0.8-0 with previous version 0.7-5 dated 2012-01-06

Title: R interface to the OpenBUGS MCMC software
Description: Fully-interactive R interface to the OpenBUGS software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on Linux and on 64-bit R under Windows are in "beta" status and less efficient.
Author: OpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Maintainer: Uwe Ligges

Diff between BRugs versions 0.7-5 dated 2012-01-06 and 0.8-0 dated 2012-07-24

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New package sig with initial version 0.0-2
Package: sig
Type: Package
Title: Print function signatures.
Version: 0.0-2
Date: 2012-07-24
Authors@R: person("Richard", "Cotton", role = c("aut", "cre"), email = "richierocks@gmail.com")
Description: A really simple package for printing function signatures. Great for playing "black box".
License: Unlimited
LazyLoad: yes
LazyData: yes
Collate: 'sig.R' 'output.R'
Packaged: 2012-07-24 12:59:21 UTC; richie
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton
Repository: CRAN
Date/Publication: 2012-07-24 13:27:12

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Package doRNG updated to version 1.4.5 with previous version 1.4.1 dated 2012-05-25

Title: Generic Reproducible Parallel Backend for foreach Loops
Description: This package provides functions to perform reproducible parallel foreach loops, using independent random streams as generated by L'Ecuyer's combined multiple-recursive generator [L'Ecuyer (1999)]. It enables to easily convert standard %dopar% loops into fully reproducible loops, independently of the number of workers, the task scheduling strategy, or the chosen parallel environment and associated foreach backend.
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux

Diff between doRNG versions 1.4.1 dated 2012-05-25 and 1.4.5 dated 2012-07-24

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New package SteinerNet with initial version 1.1
Package: SteinerNet
Version: 1.1
Date: 2012-7-22
Title: Steiner approach for Biological Pathway Graph Analysis
License: GPL-3
Author: Afshin Sadeghi, Holger Froehlich
Maintainer: Afshin Sadeghi
Depends: R (>= 2.0), igraph0 , RBGL , limma
Imports: igraph0, RBGL, limma
Description: A set of graph functions writen in R to perform steiner tree network data analysis on biological pathway data
Packaged: 2012-07-24 07:52:30 UTC; sadeghi
X-CRAN-Original-Package: SteinerNet
X-CRAN-Comment: Package is broken since a (premilinary announced) API change in package igraph, although an igraph0 compatibility package is available.
Repository: CRAN
Date/Publication: 2012-07-24 08:22:07

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Package lcmm updated to version 1.5.7 with previous version 1.5.6 dated 2012-07-16

Title: Estimation of latent class mixed models, joint latent class mixed models and mixed models for curvilinear outcomes
Description: This package provides functions for the estimation of various latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear outcomes using a maximum likelihood method
Author: Cecile Proust-Lima, Amadou Diakite and Benoit Liquet
Maintainer:

Diff between lcmm versions 1.5.6 dated 2012-07-16 and 1.5.7 dated 2012-07-24

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Package relSim updated to version 0.1-47 with previous version 0.1-34 dated 2012-03-14

Title: Relative Simulator
Description: A set of tools to explore the behaviour statistics used for forensic DNA interpretation when close relatives are involved
Author: James M. Curran
Maintainer: James M. Curran

Diff between relSim versions 0.1-34 dated 2012-03-14 and 0.1-47 dated 2012-07-24

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Package RcppClassic updated to version 0.9.2 with previous version 0.9.1 dated 2011-04-07

Title: Deprecated 'classic' Rcpp API
Description: The RcppClassic package provides a deprecated C++ library which facilitates the integration of R and C++. New projects should use the new Rcpp API in the Rcpp package.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by David Reiss, and based on code written during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel

Diff between RcppClassic versions 0.9.1 dated 2011-04-07 and 0.9.2 dated 2012-07-24

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Package pkgmaker updated to version 0.8 with previous version 0.6.5 dated 2012-06-20

Title: Package development utilities
Description: This package provides some low-level utilities to use for package development. It currently provides managers for multiple package specific options and registries, vignette, unit test and bibtex related utilities. It serves as a base package for packages like NMF, RcppOctave, doRNG, and as an incubator package for other general purposes utilities, that will eventually be packaged separately. It is still under heavy development and changes in the interface(s) are more than likely to happen.
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux

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Package desire updated to version 1.0.6 with previous version 1.0.5 dated 2009-09-22

Title: Desirability functions
Description: Harrington and Derringer-Suich type desirability functions
Author: Heike Trautmann and Detlef Steuer and Olaf Mersmann
Maintainer: Olaf Mersmann

Diff between desire versions 1.0.5 dated 2009-09-22 and 1.0.6 dated 2012-07-24

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