Title: Bayesian Inference for Zero-Inflated Count Models
Description: This package provides MCMC algorithms for the analysis of
zero-inflated count models. The case of stochastic search
variable selection (SVS) is also considered. All MCMC samplers
are coded in C++ for improved efficiency. A data set
considering the demand for health care is provided.
Author: Markus Jochmann
Maintainer: Markus Jochmann
Diff between zic versions 0.7.0 dated 2012-04-20 and 0.7.5 dated 2012-07-31
zic-0.7.0/zic/man/zic.ssvs.Rd |only zic-0.7.5/zic/DESCRIPTION | 8 +-- zic-0.7.5/zic/MD5 | 23 ++++----- zic-0.7.5/zic/R/zic.R | 54 ++++++++++++++++++--- zic-0.7.5/zic/data/docvisits.rda |binary zic-0.7.5/zic/man/docvisits.Rd | 9 +++ zic-0.7.5/zic/man/zic-internal.Rd |only zic-0.7.5/zic/man/zic.Rd | 12 ++-- zic-0.7.5/zic/man/zic.svs.Rd |only zic-0.7.5/zic/src/spikeslab.cc | 7 +- zic-0.7.5/zic/src/spikeslab.h | 2 zic-0.7.5/zic/src/zic_R_interface.cc | 24 ++++++--- zic-0.7.5/zic/src/zicmodel.cc | 87 +++-------------------------------- zic-0.7.5/zic/src/zicmodel.h | 17 ++---- 14 files changed, 112 insertions(+), 131 deletions(-)
Title: Statistical methods for visual fields
Description: A collection of tools for analyzing the field of vision.
It provides a framework for development and use of innovative
methods for visualization, statistical analysis, and clinical
interpretation of visual-field loss and its change over time.
It is intended to be a tool for collaborative research.
Author: Ivan Marin-Franch [aut, cre], Paul H Artes [aut], Chaitanya
Khadilkar [ctb] (developer), Neil O'Leary [ctb] (PoPLR),
Richard Russell [ctb] (xml2csv), William H Swanson [ctb]
(normative values), Mitchell W Dul [ctb] (normative values),
Victor E Malinovsky [ctb] (normative values)
Maintainer: Ivan Marin-Franch
Diff between visualFields versions 0.2-1 dated 2012-05-06 and 0.2-2 dated 2012-07-31
visualFields-0.2-1/visualFields/R/vfColorMap.R |only visualFields-0.2-1/visualFields/R/vflayout_legoplots.R |only visualFields-0.2-1/visualFields/R/vfsegmentCoord.R |only visualFields-0.2-1/visualFields/man/tdrankdiffperc.Rd |only visualFields-0.2-1/visualFields/man/vfColorMap.Rd |only visualFields-0.2-1/visualFields/man/vfsegmentCoord.Rd |only visualFields-0.2-2/visualFields/DESCRIPTION | 56 ++-- visualFields-0.2-2/visualFields/MD5 | 160 ++++++------ visualFields-0.2-2/visualFields/NAMESPACE | 6 visualFields-0.2-2/visualFields/R/colorMapGraph.R | 2 visualFields-0.2-2/visualFields/R/hist_poplr.R | 3 visualFields-0.2-2/visualFields/R/loadvfcsv.R | 2 visualFields-0.2-2/visualFields/R/progols.R | 30 +- visualFields-0.2-2/visualFields/R/tdrankadjperc.R | 2 visualFields-0.2-2/visualFields/R/vfcolormap.R |only visualFields-0.2-2/visualFields/R/vfgrayscale.R | 11 visualFields-0.2-2/visualFields/R/vflayout.R | 2 visualFields-0.2-2/visualFields/R/vflayout_legoplot.R |only visualFields-0.2-2/visualFields/R/vflayout_poplr.R | 11 visualFields-0.2-2/visualFields/R/vfplot.R | 17 - visualFields-0.2-2/visualFields/R/vfplot_poplr.R | 2 visualFields-0.2-2/visualFields/R/vfplotloc.R | 2 visualFields-0.2-2/visualFields/R/vfsegmentcoord.R |only visualFields-0.2-2/visualFields/data/fdplocmap.rda |binary visualFields-0.2-2/visualFields/data/nv.rda |binary visualFields-0.2-2/visualFields/data/saplocmap.rda |binary visualFields-0.2-2/visualFields/data/sapsunyiunv.rda |binary visualFields-0.2-2/visualFields/data/vf91016left.rda |only visualFields-0.2-2/visualFields/data/vf91016right.rda |only visualFields-0.2-2/visualFields/data/vfsettings.rda |binary visualFields-0.2-2/visualFields/doc/news.txt | 11 visualFields-0.2-2/visualFields/man/ageLinearModel.Rd | 22 + visualFields-0.2-2/visualFields/man/bebie.Rd | 16 - visualFields-0.2-2/visualFields/man/colorMapGraph.Rd | 14 - visualFields-0.2-2/visualFields/man/createviewport.Rd | 5 visualFields-0.2-2/visualFields/man/fdplocmap.Rd | 20 - visualFields-0.2-2/visualFields/man/filterReliability.Rd | 7 visualFields-0.2-2/visualFields/man/ghpostd.Rd | 25 - visualFields-0.2-2/visualFields/man/gloperc.Rd | 10 visualFields-0.2-2/visualFields/man/hist_poplr.Rd | 19 - visualFields-0.2-2/visualFields/man/lidLensArtifact.Rd | 16 - visualFields-0.2-2/visualFields/man/loadvfcsv.Rd | 18 - visualFields-0.2-2/visualFields/man/loadvfxml.Rd | 14 - visualFields-0.2-2/visualFields/man/loadvfxmlbatch.Rd | 15 - visualFields-0.2-2/visualFields/man/locperc.Rd | 13 visualFields-0.2-2/visualFields/man/nv.Rd | 16 - visualFields-0.2-2/visualFields/man/pdpmap.Rd | 30 -- visualFields-0.2-2/visualFields/man/pdval.Rd | 29 -- visualFields-0.2-2/visualFields/man/poplr.Rd | 21 - visualFields-0.2-2/visualFields/man/poplr_cstat.Rd | 19 - visualFields-0.2-2/visualFields/man/poplr_pstat.Rd | 18 - visualFields-0.2-2/visualFields/man/progols.Rd | 19 - visualFields-0.2-2/visualFields/man/quad2Dfit.Rd | 18 - visualFields-0.2-2/visualFields/man/saplocmap.Rd | 20 - visualFields-0.2-2/visualFields/man/sapsunyiunv.Rd | 28 +- visualFields-0.2-2/visualFields/man/sdnv.Rd | 32 -- visualFields-0.2-2/visualFields/man/setnv.Rd | 2 visualFields-0.2-2/visualFields/man/stimLoc.Rd | 11 visualFields-0.2-2/visualFields/man/tdpmap.Rd | 21 - visualFields-0.2-2/visualFields/man/tdrank.Rd | 23 - visualFields-0.2-2/visualFields/man/tdrankadjperc.Rd |only visualFields-0.2-2/visualFields/man/tdranknv.Rd | 14 - visualFields-0.2-2/visualFields/man/tdrankperc.Rd | 16 - visualFields-0.2-2/visualFields/man/tdval.Rd | 28 -- visualFields-0.2-2/visualFields/man/vf91016left.Rd |only visualFields-0.2-2/visualFields/man/vf91016right.Rd |only visualFields-0.2-2/visualFields/man/vfcolormap.Rd |only visualFields-0.2-2/visualFields/man/vfdemographics.Rd | 10 visualFields-0.2-2/visualFields/man/vfgrayscale.Rd | 24 - visualFields-0.2-2/visualFields/man/vfidefault.Rd | 7 visualFields-0.2-2/visualFields/man/vfindex.Rd | 16 - visualFields-0.2-2/visualFields/man/vfindexpmap.Rd | 17 - visualFields-0.2-2/visualFields/man/vfiperc.Rd | 16 - visualFields-0.2-2/visualFields/man/vflayout.Rd | 22 - visualFields-0.2-2/visualFields/man/vflayout_legoplot.Rd | 23 - visualFields-0.2-2/visualFields/man/vflayout_poplr.Rd | 19 - visualFields-0.2-2/visualFields/man/vfobject.Rd |only visualFields-0.2-2/visualFields/man/vfplot.Rd | 50 +-- visualFields-0.2-2/visualFields/man/vfplot_poplr.Rd | 19 - visualFields-0.2-2/visualFields/man/vfplotloc.Rd | 19 - visualFields-0.2-2/visualFields/man/vfsegmentcoord.Rd |only visualFields-0.2-2/visualFields/man/vfsettings.Rd | 15 - visualFields-0.2-2/visualFields/man/vfstats.Rd | 18 - visualFields-0.2-2/visualFields/man/vfstatspmap.Rd | 19 - visualFields-0.2-2/visualFields/man/visualFields-package.Rd |only visualFields-0.2-2/visualFields/man/xmlblock.Rd | 13 visualFields-0.2-2/visualFields/man/xmldevval.Rd | 10 visualFields-0.2-2/visualFields/man/xmlitem.Rd | 16 - visualFields-0.2-2/visualFields/man/xmlvfval.Rd | 12 visualFields-0.2-2/visualFields/man/xmlvfxy.Rd | 11 90 files changed, 521 insertions(+), 731 deletions(-)
Title: Manage and manipulate large collections of R objects stored as
tape-like files
Description: Storing huge data in RData format causes problems because
of the necessity to load the whole file to the memory in order
to access and manipulate objects inside such file; rtape is a
simple solution to this problem. The package contains several
wrappers of R built-in serialize/unserialize mechanism allowing
user to quickly append objects to a tape-like file and later
iterate over them requiring only one copy of each stored object
to reside in memory a time.
Author: Miron B. Kursa
Maintainer: Miron B. Kursa
Diff between rtape versions 2.1 dated 2012-05-22 and 2.2 dated 2012-07-31
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/makeFileFormat.R | 4 ++-- R/rtapeAdd.R | 2 +- R/shared.R | 2 +- inst/NEWS | 8 ++++++-- man/makeFileFormat.Rd | 4 ++-- man/rtapeAdd.Rd | 2 +- 8 files changed, 25 insertions(+), 21 deletions(-)
Title: Population and Evolutionary Genetics Analysis System
Description: pegas provides functions for reading, writing, plotting,
analysing, and manipulating allelic and haplotypic data, and
for the analysis of population nucleotide sequences including
coalescence analyses.
Author: Emmanuel Paradis, Alastair Potts
Maintainer: Emmanuel Paradis
Diff between pegas versions 0.4-2 dated 2012-05-11 and 0.4-3 dated 2012-07-31
pegas-0.4-2/pegas/inst/doc/pegas.bib |only pegas-0.4-2/pegas/inst/doc/tata |only pegas-0.4-2/pegas/inst/doc/titi |only pegas-0.4-2/pegas/inst/doc/toto |only pegas-0.4-2/pegas/inst/doc/tutu |only pegas-0.4-3/pegas/DESCRIPTION | 8 ++++---- pegas-0.4-3/pegas/MD5 | 21 +++++++++++---------- pegas-0.4-3/pegas/NEWS | 9 +++++++++ pegas-0.4-3/pegas/R/summary.loci.R | 11 +++-------- pegas-0.4-3/pegas/inst/doc/ReadingFiles.pdf |binary pegas-0.4-3/pegas/man/Fst.Rd | 6 +++--- pegas-0.4-3/pegas/vignettes |only 12 files changed, 30 insertions(+), 25 deletions(-)
Title: Interactive exploratory spatial data analysis
Description: GeoXp is a tool for researchers in spatial statistics,
spatial econometrics, geography, ecology etc allowing to link
dynamically statistical plots with elementary maps. This
coupling consists in the fact that the selection of a zone on
the map results in the automatic highlighting of the
corresponding points on the statistical graph or reversely the
selection of a portion of the graph results in the automatic
highlighting of the corresponding points on the map. GeoXp
includes tools from different areas of spatial statistics
including geostatistics as well as spatial econometrics and
point processes. Besides elementary plots like boxplots,
histograms or simple scatterplot, GeoXp also couples with maps
Moran scatterplots, variogram cloud, Lorentz Curves,...In order
to make the most of the multidimensionality of the data, GeoXp
includes some dimension reduction techniques such as PCA.
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne
Ruiz-Gazen, Christine Thomas-Agnan
Maintainer: Thibault Laurent
Diff between GeoXp versions 1.5.6 dated 2012-03-09 and 1.5.7 dated 2012-07-31
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/doc/presentation_geoxp.pdf |binary 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Implementation of the Fourier Amplitude Sensitivity Test (FAST)
Description: The Fourier Amplitude Sensitivity Test (FAST) is a method
to determine global sensitivities of a model on parameter
changes with relatively few model runs. This package implements
this sensitivity analysis method.
Author: Dominik Reusser
Maintainer: Dominik Reusser
Diff between fast versions 0.60 dated 2011-12-30 and 0.61 dated 2012-07-31
DESCRIPTION | 15 +++++++++------ MD5 | 6 +++--- R/sa.R | 2 +- R/sysdata.rda |binary 4 files changed, 13 insertions(+), 10 deletions(-)
Title: Adaptive Smoothing of Digital Images
Description: This package implements tools for manipulation of digital
images and the Propagation Separation approach by Polzehl and
Spokoiny (2006) for smoothing digital images.
Author: Karsten Tabelow
Maintainer: Karsten Tabelow
Diff between adimpro versions 0.7.6 dated 2011-12-07 and 0.7.7 dated 2012-07-31
DESCRIPTION | 18 +++++++++--------- MD5 | 2 +- 2 files changed, 10 insertions(+), 10 deletions(-)
Title: An R Package for the Calculation and Visualization of Student
Growth Percentiles & Percentile Growth Trajectories.
Description: Functions to calculate student growth percentiles and
percentile growth projections/trajectories for students using
large scale, longitudinal assessment data. Functions use
quantile regression to estimate the conditional density
associated with each student's achievement history. Percentile
growth projections/trajectories are calculated using the
coefficient matrices derived from the quantile regression
analyses and specify what percentile growth is required for
students to reach future achievement targets.
Author: Damian W. Betebenner
Maintainer: Damian W. Betebenner
Diff between SGP versions 0.9-0.0 dated 2012-04-12 and 0.9-9.0 dated 2012-07-31
SGP-0.9-0.0/SGP/R/growthAchievementPlot_Styles.R |only SGP-0.9-0.0/SGP/inst/doc |only SGP-0.9-0.0/SGP/man/growthAchievementPlot_Styles.Rd |only SGP-0.9-9.0/SGP/DESCRIPTION | 54 - SGP-0.9-9.0/SGP/MD5 | 72 - SGP-0.9-9.0/SGP/NAMESPACE | 2 SGP-0.9-9.0/SGP/R/abcSGP.R | 45 SGP-0.9-9.0/SGP/R/analyzeSGP.R | 369 ++++--- SGP-0.9-9.0/SGP/R/baselineSGP.R | 29 SGP-0.9-9.0/SGP/R/bubblePlot_Styles.R | 252 ++--- SGP-0.9-9.0/SGP/R/capwords.R | 1 SGP-0.9-9.0/SGP/R/checkSGP.R |only SGP-0.9-9.0/SGP/R/combineSGP.R | 425 ++++----- SGP-0.9-9.0/SGP/R/growthAchievementPlot.R | 142 +-- SGP-0.9-9.0/SGP/R/outputSGP.R | 566 +++++++----- SGP-0.9-9.0/SGP/R/prepareSGP.R | 142 ++- SGP-0.9-9.0/SGP/R/sqliteSGP.R | 208 ++-- SGP-0.9-9.0/SGP/R/startParallel.R | 11 SGP-0.9-9.0/SGP/R/stopParallel.R | 1 SGP-0.9-9.0/SGP/R/studentGrowthPercentiles.R | 144 ++- SGP-0.9-9.0/SGP/R/studentGrowthPlot_Styles.R | 926 ++++++++++---------- SGP-0.9-9.0/SGP/R/studentGrowthProjections.R | 47 - SGP-0.9-9.0/SGP/R/summarizeSGP.R | 213 +++- SGP-0.9-9.0/SGP/R/testSGP.R |only SGP-0.9-9.0/SGP/R/visualizeSGP.R | 110 +- SGP-0.9-9.0/SGP/data/SGPstateData.rda |binary SGP-0.9-9.0/SGP/inst/CITATION | 8 SGP-0.9-9.0/SGP/inst/NEWS | 74 + SGP-0.9-9.0/SGP/man/SGP-package.Rd | 4 SGP-0.9-9.0/SGP/man/abcSGP.Rd | 8 SGP-0.9-9.0/SGP/man/analyzeSGP.Rd | 48 - SGP-0.9-9.0/SGP/man/baselineSGP.Rd | 5 SGP-0.9-9.0/SGP/man/combineSGP.Rd | 12 SGP-0.9-9.0/SGP/man/outputSGP.Rd | 12 SGP-0.9-9.0/SGP/man/prepareSGP.Rd | 6 SGP-0.9-9.0/SGP/man/studentGrowthPercentiles.Rd | 73 - SGP-0.9-9.0/SGP/man/studentGrowthPlot_Styles.Rd | 10 SGP-0.9-9.0/SGP/man/studentGrowthProjections.Rd | 10 SGP-0.9-9.0/SGP/man/summarizeSGP.Rd | 5 SGP-0.9-9.0/SGP/man/testSGP.Rd |only 40 files changed, 2355 insertions(+), 1679 deletions(-)
Title: Variable selection for generalized linear mixed models by
L1-penalized estimation
Description: Variable selection for generalized linear mixed models by
L1-penalized estimation
Author: Andreas Groll
Maintainer: Andreas Groll
Diff between glmmLasso versions 1.0.4 dated 2012-07-11 and 1.0.5 dated 2012-07-31
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/glmmLasso.r | 2 +- R/likelihood.r | 7 ++++++- man/glmmLasso.rd | 6 +++--- 5 files changed, 18 insertions(+), 13 deletions(-)
Title: Gumbel copula
Description: stand alone package providing R functions for the
Gumbel-Hougaard copula. We provide probability functions
(cumulative distribution and density functions), simulation
function (Gumbel copula multivariate simulation) and estimation
functions (Maximum Likelihood Estimation, Inference For
Margins, Moment Based Estimation and Canonical Maximum
Likelihood).
Author: Anne-Lise Caillat, Christophe Dutang, V'eronique Larrieu and
Triet Nguyen
Maintainer: Christophe Dutang
Diff between gumbel versions 1.03 dated 2011-10-06 and 1.04 dated 2012-07-31
gumbel-1.03/gumbel/inst/doc/gumbel.bib |only gumbel-1.03/gumbel/inst/doc/img |only gumbel-1.04/gumbel/DESCRIPTION | 12 ++++++------ gumbel-1.04/gumbel/MD5 | 26 +++++++++++++++----------- gumbel-1.04/gumbel/data |only gumbel-1.04/gumbel/inst/doc/gumbel.Rnw | 14 +++++++------- gumbel-1.04/gumbel/inst/doc/gumbel.pdf |binary gumbel-1.04/gumbel/man/winddata.Rd |only gumbel-1.04/gumbel/vignettes |only 9 files changed, 28 insertions(+), 24 deletions(-)
Title: A package for graphical modelling in R
Description: The gRbase package provides certain general constructs
which are used by other graphical modelling packages. This
includes 1) the concept of gmData (graphical meta data), 2)
several graph algorithms 3) facilities for table operations, 4)
functions for testing for conditional independence. gRbase also
illustrates how hierarchical log-linear models (hllm) may be
implemented.
Author: S�ren H�jsgaard
Maintainer: S�ren H�jsgaard
Diff between gRbase versions 1.5-1 dated 2012-06-13 and 1.6-0 dated 2012-07-31
gRbase-1.5-1/gRbase/R/GraphAlgo-glist2adjmat.R |only gRbase-1.5-1/gRbase/R/arrayops-prim.R |only gRbase-1.5-1/gRbase/R/cliqueMAT.R |only gRbase-1.5-1/gRbase/inst/doc/ArrayOps.Rnw |only gRbase-1.5-1/gRbase/inst/doc/ArrayOps.pdf |only gRbase-1.5-1/gRbase/inst/doc/ArrayOpsPrim.Rnw |only gRbase-1.5-1/gRbase/inst/doc/ArrayOpsPrim.pdf |only gRbase-1.5-1/gRbase/inst/doc/Graphs.Rnw |only gRbase-1.5-1/gRbase/inst/doc/Graphs.pdf |only gRbase-1.5-1/gRbase/inst/doc/gRbase.Rnw |only gRbase-1.5-1/gRbase/inst/doc/gRbase.pdf |only gRbase-1.5-1/gRbase/src/arrayops-prim.c |only gRbase-1.5-1/gRbase/vignettes |only gRbase-1.6-0/gRbase/ChangeLog | 10 gRbase-1.6-0/gRbase/DESCRIPTION | 10 gRbase-1.6-0/gRbase/MD5 | 114 ++-- gRbase-1.6-0/gRbase/NAMESPACE | 4 gRbase-1.6-0/gRbase/R/GraphAlgo-TopoSort-DAG.R |only gRbase-1.6-0/gRbase/R/GraphAlgo-cliqueMAT.R |only gRbase-1.6-0/gRbase/R/GraphAlgo-coerce.R | 47 + gRbase-1.6-0/gRbase/R/GraphAlgo-mcs.R | 234 +++++---- gRbase-1.6-0/gRbase/R/GraphAlgo-minimalTriang.R | 100 +--- gRbase-1.6-0/gRbase/R/GraphAlgo-moralize.R | 89 ++- gRbase-1.6-0/gRbase/R/GraphAlgo-querygraph.R | 21 gRbase-1.6-0/gRbase/R/GraphAlgo-rip.R | 168 ++++-- gRbase-1.6-0/gRbase/R/GraphAlgo-triangulate.R | 505 +++++++++++++++++++- gRbase-1.6-0/gRbase/R/GraphAlgo-ugdag.R | 548 ++-------------------- gRbase-1.6-0/gRbase/R/GraphAlgo-vpar.R |only gRbase-1.6-0/gRbase/R/GraphAlgo-xxx2adjmat.R |only gRbase-1.6-0/gRbase/R/arrayops.R |only gRbase-1.6-0/gRbase/R/combnPrimR.R | 18 gRbase-1.6-0/gRbase/R/sparseM.R |only gRbase-1.6-0/gRbase/R/utilities.R | 88 +++ gRbase-1.6-0/gRbase/R/xxxPrim.R | 2 gRbase-1.6-0/gRbase/R/yyyPrim.R | 8 gRbase-1.6-0/gRbase/data/Nutrimouse.RData |binary gRbase-1.6-0/gRbase/data/ashtrees.RData |binary gRbase-1.6-0/gRbase/data/breastcancer.RData |binary gRbase-1.6-0/gRbase/data/chestSim1000.RData |binary gRbase-1.6-0/gRbase/data/chestSim10000.RData |binary gRbase-1.6-0/gRbase/data/chestSim100000.RData |binary gRbase-1.6-0/gRbase/data/chestSim500.RData |binary gRbase-1.6-0/gRbase/data/chestSim50000.RData |binary gRbase-1.6-0/gRbase/data/dumping.RData |binary gRbase-1.6-0/gRbase/data/lizard.RData |binary gRbase-1.6-0/gRbase/data/mildew.RData |binary gRbase-1.6-0/gRbase/data/reinis.RData |binary gRbase-1.6-0/gRbase/gRbase-Ex.R | 17 gRbase-1.6-0/gRbase/inst/doc/fulldef.bib |only gRbase-1.6-0/gRbase/inst/doc/gRbase-arrayops1.Rnw |only gRbase-1.6-0/gRbase/inst/doc/gRbase-arrayops1.pdf |only gRbase-1.6-0/gRbase/inst/doc/gRbase-arrayops2.Rnw |only gRbase-1.6-0/gRbase/inst/doc/gRbase-arrayops2.pdf |only gRbase-1.6-0/gRbase/inst/doc/gRbase-graphs.Rnw |only gRbase-1.6-0/gRbase/inst/doc/gRbase-graphs.pdf |only gRbase-1.6-0/gRbase/inst/doc/gRbase-zzz.Rnw |only gRbase-1.6-0/gRbase/inst/doc/gRbase-zzz.pdf |only gRbase-1.6-0/gRbase/inst/doc/gRbase.bib |only gRbase-1.6-0/gRbase/man/GraphAlgo-glist2adjMAT.Rd | 23 gRbase-1.6-0/gRbase/man/GraphAlgo-moralize.Rd | 6 gRbase-1.6-0/gRbase/man/GraphAlgo-operations1.Rd | 30 - gRbase-1.6-0/gRbase/man/GraphAlgo-triangulate.Rd | 8 gRbase-1.6-0/gRbase/man/gRbase-internal.Rd | 41 + gRbase-1.6-0/gRbase/man/ugdag.Rd | 8 gRbase-1.6-0/gRbase/src/Makevars | 4 gRbase-1.6-0/gRbase/src/Makevars.win |only gRbase-1.6-0/gRbase/src/MakevarsOLD |only gRbase-1.6-0/gRbase/src/arrayops.c |only gRbase-1.6-0/gRbase/src/sparseM.cpp |only 69 files changed, 1229 insertions(+), 874 deletions(-)
Title: Functions for extreme value distributions
Description: Extends simulation, distribution, quantile and density
functions to univariate and multivariate parametric extreme
value distributions, and provides fitting functions which
calculate maximum likelihood estimates for univariate and
bivariate maxima models, and for univariate and bivariate
threshold models.
Author: Alec Stephenson. Function fbvpot by Chris Ferro.
Maintainer: Alec Stephenson
Diff between evd versions 2.2-6 dated 2012-01-18 and 2.2-7 dated 2012-07-31
DESCRIPTION | 9 +++-- MD5 | 84 +++++++++++++++++++++++++++-------------------------- R/bvfit.R | 9 +++++ R/mvdist.R | 5 +-- R/uvdist.R | 44 +++++++++++++++++++++++++++ R/uvfit.R | 6 +++ data/venice2.rda |only inst/CHANGES | 15 +++++++++ man/abvevd.Rd | 8 ----- man/abvnonpar.Rd | 25 +++++++-------- man/amvnonpar.Rd | 11 ++---- man/bvevd.Rd | 10 ------ man/ccbvevd.Rd | 26 +++++++--------- man/clusters.Rd | 10 +----- man/confint.evd.Rd | 7 +--- man/evmc.Rd | 6 --- man/exi.Rd | 7 +--- man/exiplot.Rd | 9 +---- man/failure.Rd | 2 - man/fbvevd.Rd | 16 ++++------ man/fbvpot.Rd | 11 +++--- man/fextreme.Rd | 6 ++- man/forder.Rd | 8 +++-- man/fox.Rd | 2 - man/fpot.Rd | 9 +---- man/gev.Rd | 2 - man/gumbel.Rd | 4 -- man/lisbon.Rd | 2 - man/lossalae.Rd | 2 - man/ocmulgee.Rd | 2 - man/oldage.Rd | 2 - man/oxford.Rd | 2 - man/portpirie.Rd | 2 - man/qcbvnonpar.Rd | 10 +----- man/rweibull.Rd | 31 +++++++++++++------ man/sask.Rd | 2 - man/sealevel.Rd | 2 - man/sealevel2.Rd | 2 - man/uccle.Rd | 2 - man/venice.Rd | 6 ++- man/venice2.Rd |only src/bvpot.c | 32 +++++++------------- src/ccop.c | 14 +++----- src/fit.c | 18 ++++------- 44 files changed, 254 insertions(+), 228 deletions(-)
Title: Algorithms for Binned/Weighted Data Analysis
Description: This package collects functions and algorithms developed
for pre-binned and weighted data analyses.
Author: Bin Wang
Maintainer: Bin Wang
Diff between bda versions 1.1.1-7 dated 2012-01-06 and 1.2.7-31 dated 2012-07-31
bda-1.1.1-7/bda/others |only bda-1.2.7-31/bda/DESCRIPTION | 17 +- bda-1.2.7-31/bda/MD5 | 93 ++++++++------- bda-1.2.7-31/bda/NAMESPACE | 1 bda-1.2.7-31/bda/PORTING | 21 ++- bda-1.2.7-31/bda/R/BiasedSampling.R |only bda-1.2.7-31/bda/R/EDF.R | 120 +++++++------------ bda-1.2.7-31/bda/R/NewtonMethod.R | 6 bda-1.2.7-31/bda/R/PCB.R |only bda-1.2.7-31/bda/R/binning.R | 168 ++++++++++++++++++++------- bda-1.2.7-31/bda/R/bootKDE.R | 6 bda-1.2.7-31/bda/R/goftest.R | 6 bda-1.2.7-31/bda/R/histogram.R | 203 +++++++++++++++++++-------------- bda-1.2.7-31/bda/R/histolpr.R |only bda-1.2.7-31/bda/R/lpr.R |only bda-1.2.7-31/bda/R/mixedmodel.R | 4 bda-1.2.7-31/bda/R/permtest.R | 6 bda-1.2.7-31/bda/R/rounding.R |only bda-1.2.7-31/bda/R/smkde.R | 2 bda-1.2.7-31/bda/R/tkde.R |only bda-1.2.7-31/bda/R/wkde.R |only bda-1.2.7-31/bda/R/zzz.R | 2 bda-1.2.7-31/bda/data/zr.tab.gz |only bda-1.2.7-31/bda/man/BiasedSampling.Rd |only bda-1.2.7-31/bda/man/bdfmm.Rd | 18 +- bda-1.2.7-31/bda/man/binning.Rd | 60 ++++----- bda-1.2.7-31/bda/man/birth.Rd | 9 + bda-1.2.7-31/bda/man/bootkde.Rd | 22 ++- bda-1.2.7-31/bda/man/bwmise.Rd |only bda-1.2.7-31/bda/man/edf.Rd | 8 - bda-1.2.7-31/bda/man/histogram.Rd | 46 ++++--- bda-1.2.7-31/bda/man/histolpr.Rd |only bda-1.2.7-31/bda/man/histospline.Rd | 7 - bda-1.2.7-31/bda/man/lpr.Rd |only bda-1.2.7-31/bda/man/lprde.Rd |only bda-1.2.7-31/bda/man/medtest.Rd | 5 bda-1.2.7-31/bda/man/ofc.Rd | 9 + bda-1.2.7-31/bda/man/pcb.Rd | 27 +++- bda-1.2.7-31/bda/man/permtest.Rd | 6 bda-1.2.7-31/bda/man/rounding.Rd |only bda-1.2.7-31/bda/man/smkde.Rd | 7 - bda-1.2.7-31/bda/man/tkde.Rd |only bda-1.2.7-31/bda/man/wkde.Rd |only bda-1.2.7-31/bda/man/zr.Rd |only bda-1.2.7-31/bda/src/awkde.c |only bda-1.2.7-31/bda/src/dgedi.f |only bda-1.2.7-31/bda/src/dgefa.f |only bda-1.2.7-31/bda/src/dgesl.f |only bda-1.2.7-31/bda/src/edf.f |only bda-1.2.7-31/bda/src/init.c | 49 +++++++ bda-1.2.7-31/bda/src/locpoly.f |only bda-1.2.7-31/bda/src/massdist.c |only bda-1.2.7-31/bda/src/rlbin.f |only bda-1.2.7-31/bda/src/wbin.f |only bda-1.2.7-31/bda/src/wlinbin.f |only 55 files changed, 572 insertions(+), 356 deletions(-)
Title: RForcecom provides the connection to Force.com (Salesforce.com)
from R.
Description: RForcecom provides the connection to Force.com and
Salesforce.com from R.
Author: Takekatsu Hiramura
Maintainer: Takekatsu Hiramura
Diff between RForcecom versions 0.2 dated 2012-05-22 and 0.3 dated 2012-07-31
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ R/rforcecom.create.R | 7 ++++++- R/rforcecom.delete.R | 8 +++++++- R/rforcecom.getServerTimestamp.R | 4 ++++ R/rforcecom.login.R | 7 ++++++- R/rforcecom.query.R | 8 +++++++- R/rforcecom.retrieve.R | 4 ++++ R/rforcecom.search.R | 8 +++++++- R/rforcecom.update.R | 8 +++++++- R/rforcecom.upsert.R | 8 +++++++- man/RForcecom-package.Rd | 10 +++++----- man/rforcecom.login.Rd | 5 +++-- 13 files changed, 79 insertions(+), 30 deletions(-)
Title: Rcpp bindings for NumPy files
Description: This package provides R with access to the cnpy library
written by Carl Rogers which provides read and write facilities
for files created with (or for) the NumPy extension for Python.
Vectors and matrices of numeric types can be read or written to
and from files as well as compressed files. Support for integer
files is available if the package (and Rcpp) have been compiled
with -std=c++0x.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
Diff between RcppCNPy versions 0.1.0 dated 2012-07-08 and 0.2.0 dated 2012-07-31
ChangeLog | 24 +++++++++++++-- DESCRIPTION | 22 ++++++------- MD5 | 24 +++++++-------- cleanup | 2 - demo/timings.R | 6 +-- inst/NEWS.Rd | 14 +++++++- inst/doc/RcppCNPy-intro.Rnw | 68 ++++++------------------------------------- inst/doc/RcppCNPy-intro.pdf |binary man/RcppCNPy-package.Rd | 21 ++++++++++--- src/cnpy.cpp | 8 +++-- src/cnpy.h | 19 ++++++++++++ src/cnpyMod.cpp | 45 ++++++++++++++++++++++------ vignettes/RcppCNPy-intro.Rnw | 68 ++++++------------------------------------- 13 files changed, 159 insertions(+), 162 deletions(-)
Title: Qualitative Comparative Analysis
Description: Performs the Quine-McCluskey algorithm for Qualitative
Comparative Analysis, for all versions: csQCA, mvQCA and fsQCA.
Author: Adrian Dusa
Maintainer: Adrian Dusa
Diff between QCA versions 1.0-3 dated 2012-04-25 and 1.0-4 dated 2012-07-31
QCA-1.0-3/QCA/.dropbox |only QCA-1.0-3/QCA/inst/CHANGES |only QCA-1.0-4/QCA/DESCRIPTION | 8 QCA-1.0-4/QCA/MD5 | 62 +++-- QCA-1.0-4/QCA/NAMESPACE | 1 QCA-1.0-4/QCA/R/eqmcc.R | 29 +- QCA-1.0-4/QCA/R/factorize.R | 46 ++-- QCA-1.0-4/QCA/R/findSubsets.R | 8 QCA-1.0-4/QCA/R/is.print.R | 4 QCA-1.0-4/QCA/R/solveChart.R | 31 ++ QCA-1.0-4/QCA/R/superSubset.R | 389 +++++++++++++++++------------------- QCA-1.0-4/QCA/R/truthTable.R | 122 +++++------ QCA-1.0-4/QCA/R/writeSolution.R | 18 - QCA-1.0-4/QCA/data/Rokkan.tab.gz |binary QCA-1.0-4/QCA/inst/ChangeLog |only QCA-1.0-4/QCA/man/HarKem.Rd | 2 QCA-1.0-4/QCA/man/QCA-internal.Rd | 2 QCA-1.0-4/QCA/man/QCA.package.Rd | 51 ++-- QCA-1.0-4/QCA/man/allExpressions.Rd | 40 ++- QCA-1.0-4/QCA/man/calibrate.Rd | 4 QCA-1.0-4/QCA/man/createMatrix.Rd | 50 ++-- QCA-1.0-4/QCA/man/demoChart.Rd | 51 ++-- QCA-1.0-4/QCA/man/eqmcc.Rd | 50 +++- QCA-1.0-4/QCA/man/factorize.Rd | 51 +++- QCA-1.0-4/QCA/man/findSubsets.Rd | 52 ++-- QCA-1.0-4/QCA/man/findSupersets.Rd | 74 +++--- QCA-1.0-4/QCA/man/findTh.Rd | 2 QCA-1.0-4/QCA/man/getRow.Rd | 57 +++-- QCA-1.0-4/QCA/man/pof.Rd | 35 ++- QCA-1.0-4/QCA/man/solveChart.Rd | 33 +-- QCA-1.0-4/QCA/man/superSubset.Rd | 12 + QCA-1.0-4/QCA/man/truthTable.Rd | 20 + QCA-1.0-4/QCA/src |only 33 files changed, 717 insertions(+), 587 deletions(-)
Title: R interface to the Gearman Job Server
Description: gearman provides a reference class interface to the
Gearman Job server. gearman links to the libgearman C library
and currently exposes the client API, allowing R users to
submit jobs to Gearman Job servers. A future version may expose
the worker API, thus allowing users to place R jobs within the
server... callable by any gearman-enabled client.
Author: Jeffrey Horner
Maintainer: Jeffrey Horner
Diff between gearman versions 0.1-2 dated 2012-07-26 and 0.1-3 dated 2012-07-31
gearman-0.1-2/gearman/src/osx_config.h |only gearman-0.1-3/gearman/DESCRIPTION | 8 ++++---- gearman-0.1-3/gearman/MD5 | 12 ++++++++---- gearman-0.1-3/gearman/configure | 2 ++ gearman-0.1-3/gearman/src/libgearman-1.0/gearman.h | 2 +- gearman-0.1-3/gearman/src/osx_config.h.10.8 |only gearman-0.1-3/gearman/src/osx_config.h.11.0 |only gearman-0.1-3/gearman/src/osx_config.h.11.4 |only gearman-0.1-3/gearman/src/osx_config.h.12.0 |only gearman-0.1-3/gearman/src/osx_config.h.9.8 |only 10 files changed, 15 insertions(+), 9 deletions(-)
Title: Categorical Randomized Block Data Analysis
Description: Implements a statistical test for comparing bar plots or
histograms of categorical data derived from a randomized block
repeated measures layout.
Author: David Allingham, D.J. Best
Maintainer: David Allingham
Diff between crblocks versions 0.5-0 dated 2012-06-01 and 0.9-0 dated 2012-07-31
DESCRIPTION | 8 +- MD5 | 6 +- R/crblocks.R | 161 +++++++++++++++++++++++++++++++++++++++++++++++--------- man/crblocks.Rd | 106 +++++++++++++++++++++++++++++------- 4 files changed, 228 insertions(+), 53 deletions(-)