Title: Distribution function of quadratic forms in normal variables
Diff between CompQuadForm versions 1.3 dated 2011-03-09 and 1.4 dated 2012-08-10
Description: Computes the distribution function of quadratic forms in
normal variables using Imhof's method, Davies's algorithm,
Farebrother's algorithm or Liu et al.'s algorithm.
Author: P. Lafaye de Micheaux
Maintainer: P. Lafaye de Micheaux
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
inst/HISTORY | 5 +++++
4 files changed, 9 insertions(+), 4 deletions(-)
Title: Estimation of optimal number of biomarkers for two-group
microarray based classifications at a given error tolerance
level for various classification rules
Diff between optBiomarker versions 1.0-22 dated 2012-03-19 and 1.0-23 dated 2012-08-10
Description: Estimates optimal number of biomarkers for two-group
classification based on microarray data
Author: Mizanur Khondoker
Maintainer: Mizanur Khondoker
DESCRIPTION | 8 ++--
MD5 | 20 +++++-----
R/internal.R | 66 +++-------------------------------
data/errorDbase.RData |binary
data/realBiomarker.RData |binary
man/classificationError.data.frame.Rd | 7 +++
man/errorDbase.Rd | 10 ++++-
man/optBiomarker-package.Rd | 5 ++
man/optimiseBiomarker.Rd | 5 ++
man/realBiomarker.Rd | 6 +++
man/simData.Rd | 8 +++-
11 files changed, 57 insertions(+), 78 deletions(-)
Title: Model-based Sliced Inverse Regression
Diff between msir versions 1.1 dated 2012-05-30 and 1.2 dated 2012-08-10
Description: An R package for dimension reduction based on finite
Gaussian mixture modeling of inverse regression.
Author: Luca Scrucca
Maintainer: Luca Scrucca
CHANGES | 5 +++++
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/msir.R | 52 +++++++++++++++++++++++++++++++---------------------
inst/CITATION | 8 ++++----
man/summary.msir.Rd | 3 ++-
6 files changed, 51 insertions(+), 35 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Diff between ChemoSpec versions 1.51-0 dated 2012-05-23 and 1.51-2 dated 2012-08-10
Description: A collection of functions for plotting spectra (NMR, IR
etc) and carrying out various forms of top-down exploratory
data analysis, such as HCA, PCA and model-based clustering.
The design allows comparison of data from samples which fall
into groups such as treatment vs. control. Robust methods
appropriate for this type of high-dimensional data are
available. ChemoSpec is designed to be very user friendly and
suitable for people with limited background in R.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson
DESCRIPTION | 9 +++++----
MD5 | 18 +++++++++---------
NEWS | 12 ++++++++++++
R/coordProjCS.R | 8 ++++----
R/getManyCsv.R | 4 ++++
R/sumSpectra.R | 4 ++--
README.asciidoc | 4 +++-
man/ChemoSpec-package.Rd | 4 ++--
man/getManyCsv.Rd | 10 ++++++++--
man/sumSpectra.Rd | 8 ++++++--
10 files changed, 55 insertions(+), 26 deletions(-)
Title: Functions for Systems Factorial Technology Analysis of Data
Diff between sft versions 0.0-4 dated 2012-04-17 and 0.0-5 dated 2012-08-10
Description: This package contains a series of tools for analyzing
Systems Factorial Technology data. This includes functions for
plotting and statistically testing capacity coefficient
functions and survivor interaction contrast functions.
Author: Joe Houpt
Maintainer: Joe Houpt
sft-0.0-4/sft/man/ARTmic.Rd |only
sft-0.0-5/sft/DESCRIPTION | 8 +-
sft-0.0-5/sft/MD5 | 18 ++--
sft-0.0-5/sft/NAMESPACE | 2
sft-0.0-5/sft/R/CapacityNA.R | 25 ++++--
sft-0.0-5/sft/R/sic.R | 83 +++++++++++++---------
sft-0.0-5/sft/R/ucipTest.R | 139 ++++++++++++++++----------------------
sft-0.0-5/sft/man/capacity.and.Rd | 2
sft-0.0-5/sft/man/capacity.or.Rd | 2
sft-0.0-5/sft/man/micTest.Rd |only
sft-0.0-5/sft/man/sic.Rd | 4 -
11 files changed, 147 insertions(+), 136 deletions(-)
Title: Estimation of R0 and real-time reproduction number from
epidemics
Diff between R0 versions 1.1 dated 2012-07-27 and 1.1-2 dated 2012-08-10
Description: This package is designed to estimate reproduction numbers
for disease outbreak, based on incidence data. It implements
several documented methods. It is therefore possible to compare
estimations according to the methods used. Depending on the
methods requested by user, basic reproduction number (commonly
denoted as R0) or real-time reproduction number (referred to as
R(t)) is computed, along with a 95% Confidence Interval.
Plotting outputs will give different graphs depending on the
methods requested : basic reproductive number estimations will
only show the epidemic curve (collected data) and an adjusted
model, whereas real-time methods will also show the R(t)
variations throughout the outbreak time period. Sensitivity
analysis tools are also provided, and allow for investigating
effects of varying Generation Time distribution or time window
on estimates.
Author: Pierre-Yves Boelle, Thomas Obadia
Maintainer: Thomas Obadia
DESCRIPTION | 10 +++++-----
MD5 | 16 ++++++++--------
R/est.R0.TD.R | 9 +++++----
data/GT.chld.hsld.rda |binary
data/Germany.1918.rda |binary
data/H1N1.serial.interval.rda |binary
man/R0-package.Rd | 10 +++++-----
man/sensitivity.analysis.Rd | 2 +-
tests/sensitivity.analysis.R | 2 +-
9 files changed, 25 insertions(+), 24 deletions(-)
Title: Kriging-based Inversion for Deterministic and Noisy Computer
Experiments
Diff between KrigInv versions 1.2 dated 2012-03-26 and 1.3 dated 2012-08-10
Description: Criteria and algorithms for sequentially estimating level
sets of a multivariate numerical function, possibly observed in
noise.
Author: Clement Chevalier, Victor Picheny and David Ginsbourger
Maintainer: Clement Chevalier
DESCRIPTION | 10
MD5 | 110 +++++----
NAMESPACE | 7
R/EGI.R | 18 -
R/EGIparallel.R | 109 +++++----
R/integration_design.R | 431 +++++++++++++++++++++-----------------
R/max_infill_criterion.R | 163 +++++++-------
R/max_sur.R | 9
R/max_sur_parallel.R | 306 ++++++++++++++------------
R/max_timse.R | 7
R/max_timse_parallel.R | 322 +++++++++++++++-------------
R/max_vorob_parallel.R |only
R/print_uncertainty_1d.R | 170 ++++++++------
R/print_uncertainty_2d.R | 167 +++++++-------
R/print_uncertainty_nd.R | 262 +++++++++++------------
R/sur_optim_parallel.R | 124 +++++-----
R/vorob_optim_parallel.R |only
R/vorob_optim_parallel2.R |only
R/vorob_threshold.R |only
man/EGI.Rd | 378 +++++++++++++++++----------------
man/EGIparallel.Rd | 367 ++++++++++++++++----------------
man/KrigInv-package.Rd | 145 ++++++------
man/bichon_optim.Rd | 10
man/camelback2.Rd | 2
man/computeAuxVariables_noChol.Rd | 104 ++++-----
man/computeAuxVariables_update.Rd | 104 ++++-----
man/computeQuickKrigcov.Rd | 186 ++++++++--------
man/computeRealVolumeConstant.Rd | 138 ++++++------
man/fun_test2d_ranjan.Rd | 2
man/fundet.Rd | 2
man/integration_design.Rd | 216 +++++++++----------
man/jn_optim.Rd | 218 +++++++++----------
man/lili2D.Rd | 2
man/max_infill_criterion.Rd | 196 ++++++++---------
man/max_sur.Rd | 236 ++++++++++----------
man/max_sur_parallel.Rd | 228 ++++++++++----------
man/max_timse.Rd | 230 ++++++++++----------
man/max_timse_parallel.Rd | 248 +++++++++++----------
man/max_vorob_parallel.Rd |only
man/precomputeUpdateData.Rd | 162 +++++++-------
man/predict_nobias_km.Rd | 16 -
man/predict_update_km.Rd | 224 +++++++++----------
man/predict_update_km_parallel.Rd | 238 ++++++++++----------
man/print_uncertainty.Rd | 145 ++++++------
man/print_uncertainty_1d.Rd | 297 +++++++++++++-------------
man/print_uncertainty_2d.Rd | 350 +++++++++++++++---------------
man/print_uncertainty_nd.Rd | 245 ++++++++++-----------
man/ranjan_optim.Rd | 12 -
man/sur_optim.Rd | 224 +++++++++----------
man/sur_optim_parallel.Rd | 193 ++++++++---------
man/sur_optim_parallel2.Rd | 249 ++++++++++-----------
man/timse_optim.Rd | 238 ++++++++++----------
man/timse_optim_parallel.Rd | 212 +++++++++---------
man/timse_optim_parallel2.Rd | 275 ++++++++++++------------
man/tmse_optim.Rd | 13 -
man/tsee_optim.Rd | 155 ++++++-------
man/update_km.Rd | 161 ++++++--------
man/vorob_optim_parallel.Rd |only
man/vorob_optim_parallel2.Rd |only
man/vorob_threshold.Rd |only
60 files changed, 4431 insertions(+), 4205 deletions(-)
Title: iRefIndex Manager
Diff between iRefR versions 0.94 dated 2011-11-24 and 0.97 dated 2012-08-10
Description: "iRefR" allows the user to load any version of the
consolidated protein interaction database "iRefIndex" and
perform tasks such as: selecting databases, pmids, experimental
methods, searching for specific proteins, separate binary
interactions from complexes and polymers, generate complexes
according to an algorithm that looks after possible
binary-represented complexes, make general database statistics
and create network graphs, among others.
Author: Antonio Mora
Maintainer: Antonio Mora
DESCRIPTION | 26 +++++++++-----
MD5 | 22 ++++++------
R/create_id_conversion_table.R | 2 -
inst/NEWS | 66 ++++++++++++++++++++++++++++++++++++
inst/doc/iRefR_tutorial.pdf |binary
man/convert_MITAB_to_complexList.Rd | 18 +++++----
man/convert_complexList_to_MITAB.Rd | 18 +++++----
man/convert_edgeList_to_graph.Rd | 2 -
man/create_id_conversion_table.Rd | 2 -
man/merge_complexes_lists.Rd | 2 +
man/select_protein.Rd | 6 ++-
man/summary_protein.Rd | 2 +
12 files changed, 125 insertions(+), 41 deletions(-)
Title: Asymptotic statistic
Diff between asympTest versions 0.1.2 dated 2010-10-23 and 0.1.3 dated 2012-08-10
Description: Asymptotic testing
Author: Cqls Team
Maintainer: Lafaye de Micheaux Pierre
DESCRIPTION | 10 +++++-----
MD5 |only
inst/HISTORY | 8 ++++++++
3 files changed, 13 insertions(+), 5 deletions(-)
Title: Examples using Rcpp to interface R and C++
Diff between RcppExamples versions 0.1.3 dated 2011-12-30 and 0.1.4 dated 2012-08-10
Description: Examples for Seamless R and C++ integration The Rcpp
package contains a C++ library that facilitates the integration
of R and C++ in various ways. This package provides some usage
examples.
Note that the documentation in this package currently does not cover
all the features in the package. It is not even close.
It does however provide a few example based on both the (deprecated)
`classic' API and the current Rcpp API which supercedes it. As
such, it can help in porting from the older API to the newer
API.
Author: Dirk Eddelbuettel and Romain Francois, based on code written
during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel
ChangeLog | 8 ++++++++
DESCRIPTION | 33 +++++++++++++++++----------------
MD5 | 13 ++++++++-----
NAMESPACE | 1 +
NEWS | 4 ++++
R/RcppRNGs.R |only
man/RcppRNGs.Rd |only
src/Makevars.win | 12 ++++++------
src/RcppRNGs.cpp |only
9 files changed, 44 insertions(+), 27 deletions(-)
Title: Function to create a random list for crossover studies
Diff between randomizeBE versions 0.1-2 dated 2012-07-05 and 0.1-3 dated 2012-08-10
Description: Contains a function to randomise subjects, patients in
groups of sequences (treatment sequences). If a blocksize is
given, the randomisation will be done within blocks. The
randomisation may be controlled by a Wald-Wolfowitz runs test.
The package is mainly intended for randomisation of
bioequivalence studies but may be used also for other clinical
crossover studies
Author: D. Labes
Maintainer: D. Labes
randomizeBE-0.1-2/randomizeBE/man/randomize-package.Rd |only
randomizeBE-0.1-3/randomizeBE/DESCRIPTION | 8
randomizeBE-0.1-3/randomizeBE/MD5 | 16 -
randomizeBE-0.1-3/randomizeBE/NAMESPACE | 3
randomizeBE-0.1-3/randomizeBE/NEWS |only
randomizeBE-0.1-3/randomizeBE/R/RL4_new.R | 53 ++++-
randomizeBE-0.1-3/randomizeBE/R/runs_test.R | 147 +++++++++++++--
randomizeBE-0.1-3/randomizeBE/man/RL4.Rd | 30 ++-
randomizeBE-0.1-3/randomizeBE/man/pruns.exact.Rd |only
randomizeBE-0.1-3/randomizeBE/man/randomizeBE-package.Rd |only
randomizeBE-0.1-3/randomizeBE/man/runs.pvalue.Rd | 45 +++-
11 files changed, 245 insertions(+), 57 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-22 1.2.3
2012-03-21 1.2.2
2012-01-27 1.2.1
2012-01-22 1.2
2011-08-22 1.1.2
2011-08-10 1.1.1
2011-07-23 1.1.0
2011-06-17 1.0.3
2011-06-15 1.0.2
2011-04-11 1.0.1
2011-03-02 1.0
2011-02-13 0.9.1
2010-11-22 0.9
2010-11-17 0.8.1
2010-11-14 0.8
2010-11-11 0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-03 1.3.1
2011-10-27 1.3
2010-10-25 1.2.3
2010-10-18 1.2.2
2010-07-03 1.2.1
2010-03-08 1.2
2009-09-29 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-08 0.2-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-02-12 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-02-12 0.81-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-22 0.5-3
2010-10-19 0.5-2
2010-04-03 0.5-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-09-07 0.2
2011-09-06 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-10 1.5
2007-06-14 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-08-10 1.0-1
2009-02-16 1.0-0
Title: Less Code, More Results
Diff between lessR versions 2.4.2 dated 2012-07-22 and 2.5 dated 2012-08-10
Description: Each function accomplishes the work of several or more
standard R functions. For example, two function calls, Read()
and CountAll(), read the data and generate descriptive
statistics for all variables in the data frame, plus histograms
and bar charts as appropriate. Other functions provide for
descriptive statistics, a comprehensive regression analysis,
ANOVA and t-test, color plotting, color bar chart, color
histogram, color box plot, color density curves, a calibrated
power curve, and the reading and display of csv and other
formatted data. The function Help provides a help system that
suggests specific analyses and functions. Variable labels, and
color themes with the set function, are also available. A
confirmatory factor analysis of multiple indicator measurement
models is also available as well as pedagogical routines for
data simulation such as for the Central Limit Theorem.
Author: David W. Gerbing, School of Business Administration, Portland
State University
Maintainer: David W. Gerbing
lessR-2.4.2/lessR/R/corListVars.R |only
lessR-2.4.2/lessR/R/listvars.R |only
lessR-2.4.2/lessR/R/plt.R |only
lessR-2.4.2/lessR/man/Plot.Rd |only
lessR-2.4.2/lessR/man/corListVars.Rd |only
lessR-2.4.2/lessR/src/srt.f |only
lessR-2.5/lessR/DESCRIPTION | 9 -
lessR-2.5/lessR/MD5 | 105 ++++++++++--------
lessR-2.5/lessR/NAMESPACE | 8 +
lessR-2.5/lessR/NEWS | 104 ++++++++++++++++-
lessR-2.5/lessR/R/ANOVA.R | 4
lessR-2.5/lessR/R/Correlation.R | 53 ++++++---
lessR-2.5/lessR/R/DotPlot.R |only
lessR-2.5/lessR/R/Help.R | 141 +++++++++++++++---------
lessR-2.5/lessR/R/Logit.R |only
lessR-2.5/lessR/R/Model.R | 38 +++++-
lessR-2.5/lessR/R/Plot.R | 203 -----------------------------------
lessR-2.5/lessR/R/Recode.R | 76 +++++++++----
lessR-2.5/lessR/R/Regression.R | 6 -
lessR-2.5/lessR/R/ScatterPlot.R |only
lessR-2.5/lessR/R/Sort.R |only
lessR-2.5/lessR/R/Subset.R |only
lessR-2.5/lessR/R/SummaryStats.R | 21 ++-
lessR-2.5/lessR/R/Transform.R |only
lessR-2.5/lessR/R/corCFA.R | 68 ++++++++---
lessR-2.5/lessR/R/corEFA.R | 6 -
lessR-2.5/lessR/R/corReflect.R | 9 +
lessR-2.5/lessR/R/corReorder.R | 19 ++-
lessR-2.5/lessR/R/corScree.R | 16 ++
lessR-2.5/lessR/R/cr.data.frame.R | 54 ++++++---
lessR-2.5/lessR/R/dp.R |only
lessR-2.5/lessR/R/lgt.R |only
lessR-2.5/lessR/R/logit.z3Residual.R |only
lessR-2.5/lessR/R/logit.z4Pred.R |only
lessR-2.5/lessR/R/prob.norm.R | 2
lessR-2.5/lessR/R/prob.znorm.R | 2
lessR-2.5/lessR/R/qnt.t.R | 2
lessR-2.5/lessR/R/rec.zmain.R | 132 ++++++++++++----------
lessR-2.5/lessR/R/reg.z3Residual.R | 12 --
lessR-2.5/lessR/R/reg.z5Plot.R | 2
lessR-2.5/lessR/R/set.R | 2
lessR-2.5/lessR/R/sp.R |only
lessR-2.5/lessR/R/srt.R |only
lessR-2.5/lessR/R/ss.zdata.frame.R | 10 -
lessR-2.5/lessR/R/ss.zfactor.R | 2
lessR-2.5/lessR/R/subs.R |only
lessR-2.5/lessR/R/trans.R |only
lessR-2.5/lessR/R/tt.z2graph.R | 2
lessR-2.5/lessR/R/ttest.R | 36 ++++--
lessR-2.5/lessR/R/zzz.R | 8 -
lessR-2.5/lessR/man/Correlation.Rd | 37 +++---
lessR-2.5/lessR/man/Help.Rd | 8 +
lessR-2.5/lessR/man/Logit.Rd |only
lessR-2.5/lessR/man/Model.Rd | 23 ++-
lessR-2.5/lessR/man/Recode.Rd | 53 ++++++---
lessR-2.5/lessR/man/Regression.Rd | 10 -
lessR-2.5/lessR/man/ScatterPlot.Rd |only
lessR-2.5/lessR/man/Sort.Rd |only
lessR-2.5/lessR/man/Subset.Rd |only
lessR-2.5/lessR/man/Transform.Rd |only
lessR-2.5/lessR/man/corCFA.Rd | 32 +++--
lessR-2.5/lessR/man/corProp.Rd | 2
lessR-2.5/lessR/man/corReflect.Rd | 8 -
lessR-2.5/lessR/man/corReorder.Rd | 7 -
lessR-2.5/lessR/man/corScree.Rd | 4
lessR-2.5/lessR/man/ttestPower.Rd | 4
66 files changed, 758 insertions(+), 582 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-05 1.0.1
2009-09-10 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-28 2.1.2
2012-04-19 2.0.2
2012-01-27 2.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-14 2.0.1
2012-02-25 2.0.0
2011-12-27 1.5.5
2011-05-21 1.5.0
2010-12-10 1.4.4
2010-12-01 1.4.3
2010-11-26 1.4.2
2010-11-15 1.3.4
2009-06-19 1.3.1
2009-04-27 1.3.0
2008-11-30 1.2.0
2008-08-11 1.0.4
2008-06-26 1.0.3
2007-11-23 1.0.1
2007-11-20 1.0.0
2007-11-08 0.9.4
2007-11-07 0.9.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-05-10 0.3
2009-10-23 0.02
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-06-15 2.0
2010-12-13 1.1
2010-11-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-01-31 1.0.1
2010-12-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-12 1.0.1
2011-10-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-04-23 1.0.1
2011-10-04 1.0
Title: rChoiceDialogs collection
Diff between rChoiceDialogs versions 1.0.1 dated 2011-01-15 and 1.0.3 dated 2012-08-10
More information about rChoiceDialogs at CRAN
Description: Collection of portable choice dialog widgets
Author: Alex Lisovich, Roger Day
Maintainer: Alex Lisovich
rChoiceDialogs-1.0.1/rChoiceDialogs/inst/doc/rChoiceDialogs.lyx |only
rChoiceDialogs-1.0.1/rChoiceDialogs/inst/doc/rChoiceDialogs.txt_ |only
rChoiceDialogs-1.0.3/rChoiceDialogs/DESCRIPTION | 10 ++---
rChoiceDialogs-1.0.3/rChoiceDialogs/MD5 |only
rChoiceDialogs-1.0.3/rChoiceDialogs/R/rChoiceDialogs-package.R | 4 +-
rChoiceDialogs-1.0.3/rChoiceDialogs/R/zzz.R | 2 -
rChoiceDialogs-1.0.3/rChoiceDialogs/inst/doc/rChoiceDialogs.Rnw | 19 +++++-----
rChoiceDialogs-1.0.3/rChoiceDialogs/inst/doc/rChoiceDialogs.pdf |binary
rChoiceDialogs-1.0.3/rChoiceDialogs/man/rChoiceDialogs-package.Rd | 4 +-
9 files changed, 20 insertions(+), 19 deletions(-)
Permanent link
Title: Inequality and Concentration Indices and Curves
Diff between IC2 versions 1.0 dated 2012-03-27 and 1.0-1 dated 2012-08-10
Description: Lorenz and concentration curves; Atkinson, Generalized
entropy and SGini indices (with decomposition)
Author: Didier Plat
Maintainer: Didier Plat
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
R/InegConc.r | 43 +++++++++++++++++++++++--------------------
man/calcSConc.Rd | 2 +-
man/calcSGini.Rd | 2 +-
man/decompSGini.Rd | 2 +-
6 files changed, 36 insertions(+), 33 deletions(-)
Title: Bayesian semi and nonparametric growth curve models that
additionally include multiple membership random effects.
Diff between growcurves versions 0.1.1 dated 2012-04-12 and 0.2 dated 2012-08-10
Description: Employs a non-parametric formulation for by-subject random
effect parameters to borrow strength over a constrained number
of repeated measurement waves in a fashion that permits
multiple effects per subject. One class of models employs a
Dirichlet process (DP) prior for the subject random effects and
includes an additional set of random effects that utilize a
different grouping factor and are mapped back to clients
through a multiple membership weight matrix; e.g. treatment(s)
exposure or dosage. A second class of models employs a
dependent DP (DDP) prior for the subject random effects that
directly incorporates the multiple membership pattern.
Author: Terrance Savitsky
Maintainer:
DESCRIPTION | 41 ++++---
MD5 | 94 ++++++++++-------
NAMESPACE | 47 +++++---
NEWS | 11 +-
R/XZcov.R | 21 +++
R/datbrghtmodterms.R |only
R/dateduc.R |only
R/ddpMCMCplots.R |only
R/ddp_quantiles.R |only
R/ddpeffectsplot.R |only
R/ddpgrow.R |only
R/dpgrow.R | 27 +++-
R/dpgrowmm.R | 181 +++++++++++++++++++++++++--------
R/dpgrowmult.R | 29 +++--
R/effectsplot.R | 209 +++++++++++++++++++++++++++++---------
R/growplot.R | 7 -
R/growthCurve.R | 81 ++++++++++++--
R/help.R | 73 +++++++++----
R/mcmcPlots.R | 228 ++++++++++++++++++++++++++++++------------
R/summary_quantiles.R | 58 +++++++---
R/trtplot.R | 3
data/datbrghtmodterms.RData |only
data/dateduc.RData |only
inst/tests/test-ddpgrow.R |only
inst/tests/test-dpgrowmm-mv.R |only
inst/tests/test-dpgrowmm.R | 6 -
man/datbrghtmodterms.Rd |only
man/dateduc.Rd |only
man/ddpEffectsplot.Rd |only
man/ddpMCMCplots.Rd |only
man/ddpPost.Rd |only
man/ddp_quantiles.Rd |only
man/ddpgrow.Rd |only
man/dpPost.Rd | 7 +
man/dpgrow.Rd | 6 -
man/dpgrowmm.Rd | 39 +++++--
man/dpgrowmult.Rd | 6 -
man/effectsplot.Rd | 59 +++++++---
man/growcurves-package.Rd | 143 ++++++++++++++++++--------
man/growthCurve.Rd | 13 +-
man/mcmcPlots.Rd | 30 +++--
man/mmCmvplusDpPost.Rd |only
man/mmCplusDpPost.Rd | 6 -
man/mmIgroupDpPost.Rd | 6 -
man/mmIplusDpPost.Rd | 6 -
man/mmmultPost.Rd | 6 -
man/plot.ddpgrow.Rd |only
man/samples.ddpgrow.Rd |only
man/summary.ddpgrow.Rd |only
man/summary_quantiles.Rd | 24 ++--
src/DPre.cpp | 11 +-
src/ddp.cpp |only
src/mmC.h | 26 ++--
src/mmCmiar.cpp | 183 +++++++++++++++++++++++----------
src/mmCmvplusDP.cpp | 133 ++++++++++++++----------
src/mmCplusDP.cpp | 5
src/mmIgroupDP.cpp | 5
src/mmIplusDP.cpp | 5
src/mmmult.cpp | 6 -
59 files changed, 1297 insertions(+), 544 deletions(-)