Title: SpatialTools
Diff between SpatialTools versions 0.4.2 dated 2012-08-08 and 0.4.3 dated 2012-10-01
Description: Tools for spatial data analysis. Emphasis on kriging.
Provides functions for prediction and simulation. Intended to
be relatively straightforward, fast, and flexible.
Author: Joshua French
Maintainer: Joshua French
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
NEWS | 2 ++
R/dist_funcs.R | 5 +++--
R/krige_tools.R | 55 ++++++++++++++++++++++++++++++++++++++++++++++---------
R/old_code.R | 44 ++++++++++++++++----------------------------
R/preamble.R | 2 +-
man/krige.uk.Rd | 6 +++---
8 files changed, 82 insertions(+), 54 deletions(-)
Title: Rcmdr plugin for quality control course
Diff between RcmdrPlugin.qual versions 2.2.2 dated 2012-09-06 and 2.2.3 dated 2012-10-01
More information about RcmdrPlugin.qual at CRAN
Description: This package provides an Rcmdr "plug-in" based on the
Quality control class Stat 4300
Author: Erin Hodgess
Maintainer: Erin Hodgess
DESCRIPTION | 10 +--
MD5 | 8 +-
R/RcmdrPlugin.qual.R | 106 +++++++++++++++++++++++++++++++++++++--
inst/etc/menus.txt | 3 -
man/RcmdrPlugin.qual-internal.Rd | 4 +
5 files changed, 117 insertions(+), 14 deletions(-)
Permanent link
Title: TSdbi extension to connect to zip files
Diff between TSzip versions 2012.4-1 dated 2012-05-03 and 2012.8-1 dated 2012-10-01
Description: Provides TSdbi package methods to retrieve time series
data from zipped, as if the files form a database.
Comprehensive examples of all the TS* packages is provided in
the vignette Guide.pdf with the TSdata package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 15 ++++++----
MD5 | 9 +++---
NEWS | 5 +++
inst/doc/Guide.Stex |only
inst/doc/Guide.pdf |binary
vignettes/Guide.Stex | 71 +++++++--------------------------------------------
6 files changed, 29 insertions(+), 71 deletions(-)
Title: TSdbi extension to connect to spreadsheets
Diff between TSxls versions 2012.4-1 dated 2012-05-03 and 2012.8-1 dated 2012-10-01
Description: Provides TSdbi package methods to retrieve time series
data from spreadsheets, pretending the spreadsheet is a
database. Comprehensive examples of all the TS* packages is
provided in the vignette Guide.pdf with the TSdata package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 17 +++----
MD5 | 9 ++-
NEWS | 5 ++
inst/doc/Guide.Stex |only
inst/doc/Guide.pdf |binary
vignettes/Guide.Stex | 122 ++++-----------------------------------------------
6 files changed, 29 insertions(+), 124 deletions(-)
Title: TSdbi extensions for SQLite
Diff between TSSQLite versions 2012.4-1 dated 2012-05-03 and 2012.8-1 dated 2012-10-01
Description: TSSQLite provides a SQLite interface for TSdbi.
Comprehensive examples of all the TS* packages is provided in
the vignette Guide.pdf with the TSdata package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 17 +-
MD5 | 8 -
NEWS | 7
inst/doc/Guide.pdf |binary
vignettes/Guide.Stex | 381 +--------------------------------------------------
5 files changed, 34 insertions(+), 379 deletions(-)
Title: TSdbi extensions for PostgreSQL
Diff between TSPostgreSQL versions 2012.5-1 dated 2012-05-08 and 2012.8-1 dated 2012-10-01
Description: TSPostgreSQL provides a PostgreSQL interface for TSdbi.
Comprehensive examples of all the TS* packages is provided in
the vignette Guide.pdf with the TSdata package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 17 +
MD5 | 8
NEWS | 5
inst/doc/Guide.pdf |binary
vignettes/Guide.Stex | 479 +--------------------------------------------------
5 files changed, 32 insertions(+), 477 deletions(-)
Title: TSdbi extensions for ODBC
Diff between TSodbc versions 2012.5-1 dated 2012-06-09 and 2012.8-1 dated 2012-10-01
Description: TSodbc provides an ODBC interface for TSdbi.
Comprehensive examples of all the TS* packages is provided in
the vignette Guide.pdf with the TSdata package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 19 +-
MD5 | 8
NEWS | 5
inst/doc/Guide.pdf |binary
vignettes/Guide.Stex | 411 +--------------------------------------------------
5 files changed, 36 insertions(+), 407 deletions(-)
Title: TSdbi extensions for get.hist.quote
Diff between TShistQuote versions 2012.4-1 dated 2012-05-03 and 2012.8-1 dated 2012-10-01
Description: Provides methods for generics in the TSdbi package to
retrieve data from historical quote URLs. Comprehensive
examples of all the TS* packages is provided in the vignette
Guide.pdf with the TSdata package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 17 ++++--
MD5 | 9 ++-
NEWS | 5 ++
inst/doc/Guide.Stex |only
inst/doc/Guide.pdf |binary
vignettes/Guide.Stex | 125 +++++----------------------------------------------
6 files changed, 34 insertions(+), 122 deletions(-)
Title: TSdbi extension to connect with getSymbols
Diff between TSgetSymbol versions 2012.4-1 dated 2012-05-03 and 2012.8-1 dated 2012-10-01
Description: Provides methods for generics in the TSdbi package to
retrieve data with getSymbols, in particular from the Federal
Reserve FRED database. Comprehensive examples of all the TS*
packages is provided in the vignette Guide.pdf with the TSdata
package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 18 ++++----
MD5 | 13 +++---
NEWS | 11 +++++
R/TSdbiMethods.R | 11 +++--
inst/doc/Guide.Stex |only
inst/doc/Guide.pdf |binary
man/TSdbiMethods.Rd | 6 --
vignettes/Guide.Stex | 108 ++++++---------------------------------------------
8 files changed, 51 insertions(+), 116 deletions(-)
Title: TSdbi extensions for fame
Diff between TSfame versions 2012.4-1 dated 2012-05-05 and 2012.8-1 dated 2012-10-01
Description: TSfame provides a fame interface for TSdbi. Comprehensive
examples of all the TS* packages is provided in the vignette
Guide.pdf with the TSdata package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 19 +-
MD5 | 8
NEWS | 5
inst/doc/Guide.pdf |binary
vignettes/Guide.Stex | 447 +--------------------------------------------------
5 files changed, 35 insertions(+), 444 deletions(-)
Title: TSdbi (Time Series Database Interface)
Diff between TSdbi versions 2012.4-1 dated 2012-05-03 and 2012.8-1 dated 2012-10-01
Description: TSdbi provides a common interface to time series
databases. The objective is to define a standard interface so
users can retrieve time series data from various sources with a
simple, common, set of commands, and so programs can be written
to be portable with respect to the data source. The SQL
implementations also provide a database table design, so users
needing to set up a time series database have a reasonably
complete way to do this easily. The interface provides for a
variety of options with respect to the representation of time
series in R. The interface, and the SQL implementations, also
handle vintages of time series data (sometime called editions
or realtime data). There is also a (not yet well tested)
mechanism to handle multilingual data documentation.
Comprehensive examples of all the TS* packages is provided in
the vignette Guide.pdf with the TSdata package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 15 +++++++++------
MD5 | 11 ++++++-----
NEWS | 8 ++++++++
R/TSdbi.R | 23 ++++++++++++++++++-----
inst/doc/Guide.Stex |only
inst/doc/Guide.pdf |binary
vignettes/Guide.Stex | 40 ++++++++++++++++++++++++++--------------
7 files changed, 67 insertions(+), 30 deletions(-)
Title: Pharmacometric tools for data preparation, modeling, simulation,
and reporting
Diff between metrumrg versions 5.17 dated 2012-05-05 and 5.23 dated 2012-10-01
Description: Pharmacometric tools for common data preparation tasks,
stratified bootstrap resampling of data sets, NONMEM control
stream creation/editing, NONMEM model execution, creation of
standard and user-defined diagnostic plots, execution and
summary of bootstrap and predictive check results,
implementation of simulations from posterior parameter
distributions, reporting of output tables and creation of
detailed analysis logs.
Author: Tim Bergsma, Bill Knebel, Leonid Gibiansky, Natalie Hsiang
Maintainer: Tim Bergsma
metrumrg-5.17/metrumrg/R/.Rproj.user |only
metrumrg-5.17/metrumrg/inst/example/project/nonmem/1005.bootlog.csv |only
metrumrg-5.23/metrumrg/DESCRIPTION | 8
metrumrg-5.23/metrumrg/MD5 | 201 ++-
metrumrg-5.23/metrumrg/NAMESPACE | 2
metrumrg-5.23/metrumrg/R/NONR.R | 106 +-
metrumrg-5.23/metrumrg/R/PLOTR.R | 5
metrumrg-5.23/metrumrg/R/as.digest.data.frame.R | 2
metrumrg-5.23/metrumrg/R/as.init.R | 25
metrumrg-5.23/metrumrg/R/as.keyed.R | 2
metrumrg-5.23/metrumrg/R/as.nm.R | 2
metrumrg-5.23/metrumrg/R/as.nmctl.R | 11
metrumrg-5.23/metrumrg/R/as.second.R |only
metrumrg-5.23/metrumrg/R/constant.R | 13
metrumrg-5.23/metrumrg/R/contains.R | 2
metrumrg-5.23/metrumrg/R/convertLines.R |only
metrumrg-5.23/metrumrg/R/covariatePlots.R | 54 -
metrumrg-5.23/metrumrg/R/diagnosticPlots.R | 83 -
metrumrg-5.23/metrumrg/R/latex.R | 350 +++---
metrumrg-5.23/metrumrg/R/partab.R | 26
metrumrg-5.23/metrumrg/R/qstat.R |only
metrumrg-5.23/metrumrg/R/random.R |only
metrumrg-5.23/metrumrg/R/reapply.R | 7
metrumrg-5.23/metrumrg/R/rlog.R | 110 +-
metrumrg-5.23/metrumrg/R/runCommand.R | 41
metrumrg-5.23/metrumrg/R/runNonmem.R | 136 +-
metrumrg-5.23/metrumrg/R/runlog.R | 24
metrumrg-5.23/metrumrg/R/superset.R | 60 -
metrumrg-5.23/metrumrg/inst/example/project/nonmem/1005/1005.cat |only
metrumrg-5.23/metrumrg/inst/example/project/nonmem/1005/1005.lst | 14
metrumrg-5.23/metrumrg/inst/example/project/nonmem/1005/1005.pdf |binary
metrumrg-5.23/metrumrg/inst/example/project/nonmem/1005/1005.pmn |only
metrumrg-5.23/metrumrg/inst/example/project/nonmem/1005/1005.xml | 14
metrumrg-5.23/metrumrg/inst/example/project/nonmem/1005/INTER |only
metrumrg-5.23/metrumrg/inst/example/project/nonmem/1005bootlog.csv |only
metrumrg-5.23/metrumrg/inst/example/project/nonmem/1006 |only
metrumrg-5.23/metrumrg/inst/example/project/nonmem/ctl/template.pmn |only
metrumrg-5.23/metrumrg/inst/example/project/nonmem/sim |only
metrumrg-5.23/metrumrg/inst/example/project/script/assemble.Rnw | 1
metrumrg-5.23/metrumrg/inst/example/project/script/assemble.pdf |binary
metrumrg-5.23/metrumrg/inst/example/project/script/assemble.tex | 1
metrumrg-5.23/metrumrg/inst/example/project/script/covplot-covplot.pdf |binary
metrumrg-5.23/metrumrg/inst/example/project/script/covplot.Rnw | 2
metrumrg-5.23/metrumrg/inst/example/project/script/covplot.pdf |binary
metrumrg-5.23/metrumrg/inst/example/project/script/covplot.tex | 500 ++++-----
metrumrg-5.23/metrumrg/inst/example/project/script/model-qq.pdf |binary
metrumrg-5.23/metrumrg/inst/example/project/script/model-qqdensity.pdf |binary
metrumrg-5.23/metrumrg/inst/example/project/script/model-qqdetail.pdf |binary
metrumrg-5.23/metrumrg/inst/example/project/script/model.Rnw | 244 ++--
metrumrg-5.23/metrumrg/inst/example/project/script/model.pdf |binary
metrumrg-5.23/metrumrg/inst/example/project/script/model.tex | 512 ++++++----
metrumrg-5.23/metrumrg/inst/example/project/script/parameters.Rnw | 2
metrumrg-5.23/metrumrg/inst/example/project/script/parameters.pdf |binary
metrumrg-5.23/metrumrg/inst/example/project/script/parameters.tex | 164 +--
metrumrg-5.23/metrumrg/inst/example/project/script/simpar.Rnw | 2
metrumrg-5.23/metrumrg/inst/example/project/script/simpar.pdf |binary
metrumrg-5.23/metrumrg/inst/example/project/script/simpar.tex | 71 -
metrumrg-5.23/metrumrg/inst/example/tabular/tabular.Rnw | 1
metrumrg-5.23/metrumrg/inst/example/tabular/tabular.pdf |binary
metrumrg-5.23/metrumrg/inst/example/tabular/tabular.tex | 1
metrumrg-5.23/metrumrg/inst/example/wikimath/wikimath-figure.pdf |only
metrumrg-5.23/metrumrg/inst/example/wikimath/wikimath.Rnw | 1
metrumrg-5.23/metrumrg/inst/example/wikimath/wikimath.pdf |binary
metrumrg-5.23/metrumrg/inst/example/wikimath/wikimath.tex | 1
metrumrg-5.23/metrumrg/man/NONR.Rd | 146 ++
metrumrg-5.23/metrumrg/man/PLOTR.Rd | 17
metrumrg-5.23/metrumrg/man/align.decimal.Rd | 19
metrumrg-5.23/metrumrg/man/as.init.Rd | 2
metrumrg-5.23/metrumrg/man/as.keyed.Rd | 8
metrumrg-5.23/metrumrg/man/as.nmctl.Rd | 6
metrumrg-5.23/metrumrg/man/as.second.Rd |only
metrumrg-5.23/metrumrg/man/as.unilog.run.Rd | 5
metrumrg-5.23/metrumrg/man/constant.Rd | 51
metrumrg-5.23/metrumrg/man/convertLines.Rd |only
metrumrg-5.23/metrumrg/man/dataSynthesis.Rd | 2
metrumrg-5.23/metrumrg/man/diagnosticPlots.Rd | 9
metrumrg-5.23/metrumrg/man/digest.Rd | 6
metrumrg-5.23/metrumrg/man/helpAdminister.Rd | 2
metrumrg-5.23/metrumrg/man/helpBrowse.Rd | 2
metrumrg-5.23/metrumrg/man/helpClasses.Rd | 1
metrumrg-5.23/metrumrg/man/helpList.Rd | 76 +
metrumrg-5.23/metrumrg/man/helpModel.Rd | 1
metrumrg-5.23/metrumrg/man/helpReport.Rd | 1
metrumrg-5.23/metrumrg/man/helpVector.Rd | 3
metrumrg-5.23/metrumrg/man/is.defined.Rd |only
metrumrg-5.23/metrumrg/man/ltable.data.frame.Rd | 21
metrumrg-5.23/metrumrg/man/metrumrg-package.Rd | 4
metrumrg-5.23/metrumrg/man/nm.pl.Rd | 12
metrumrg-5.23/metrumrg/man/partab.Rd | 17
metrumrg-5.23/metrumrg/man/pool.Rd |only
metrumrg-5.23/metrumrg/man/qstat.Rd |only
metrumrg-5.23/metrumrg/man/random.Rd |only
metrumrg-5.23/metrumrg/man/reapply.Rd | 10
metrumrg-5.23/metrumrg/man/rlog.Rd | 50
metrumrg-5.23/metrumrg/man/runCommand.Rd | 39
metrumrg-5.23/metrumrg/man/runNonmem.Rd | 27
metrumrg-5.23/metrumrg/man/runlog.Rd | 3
metrumrg-5.23/metrumrg/man/runstate.Rd | 54 -
metrumrg-5.23/metrumrg/man/tweak.Rd |only
metrumrg-5.23/metrumrg/man/xpath.Rd |only
100 files changed, 1996 insertions(+), 1399 deletions(-)
Title: Stable Distribution Functions
Diff between stabledist versions 0.6-4 dated 2012-05-29 and 0.6-5 dated 2012-10-01
Description: Density, Probability and Quantile functions, and random
number generation for (skew) stable distributions, using the
parametrizations of Nolan.
Author: Diethelm Wuertz, Martin Maechler and Rmetrics core team
members.
Maintainer: Martin Maechler
stabledist-0.6-4/stabledist/man/dist-stableMode.Rd |only
stabledist-0.6-5/stabledist/ChangeLog | 17
stabledist-0.6-5/stabledist/DESCRIPTION | 10
stabledist-0.6-5/stabledist/Done | 17
stabledist-0.6-5/stabledist/MD5 | 25
stabledist-0.6-5/stabledist/R/dpqr-stable.R | 214 +++++--
stabledist-0.6-5/stabledist/R/utils.R | 6
stabledist-0.6-5/stabledist/TODO | 8
stabledist-0.6-5/stabledist/inst/unitTests/runit.StableDistribution.R | 61 +-
stabledist-0.6-5/stabledist/inst/xtraR |only
stabledist-0.6-5/stabledist/man/dist-stable.Rd | 87 +--
stabledist-0.6-5/stabledist/man/stableMode.Rd |only
stabledist-0.6-5/stabledist/tests/dstab-ex.R | 284 +++++++---
stabledist-0.6-5/stabledist/tests/pstab-ex.R | 128 +++-
stabledist-0.6-5/stabledist/tests/tails.R | 37 -
15 files changed, 636 insertions(+), 258 deletions(-)
Title: Normalize NanoString miRNA and mRNA data
Diff between NanoStringNorm versions 1.1.10 dated 2012-09-04 and 1.1.11 dated 2012-10-01
More information about NanoStringNorm at CRAN
Description: A set of tools for normalizing, diagnostics and
visualization of Nanostring nCounter data
Author: Daryl M. Waggott
Maintainer: Daryl Waggott
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_001.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_002.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_003.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_004.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_005.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_006.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_007.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_008.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_009.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_010.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_011.png |only
NanoStringNorm-1.1.10/NanoStringNorm/vignettes/NanoStringNorm_Example_Plots_012.png |only
NanoStringNorm-1.1.11/NanoStringNorm/DESCRIPTION | 8
NanoStringNorm-1.1.11/NanoStringNorm/MD5 | 48 -
NanoStringNorm-1.1.11/NanoStringNorm/NEWS | 24
NanoStringNorm-1.1.11/NanoStringNorm/R/NanoStringNorm.R | 4
NanoStringNorm-1.1.11/NanoStringNorm/R/Plot.NanoStringNorm.R | 402 ++++++----
NanoStringNorm-1.1.11/NanoStringNorm/R/check.trait.values.R | 2
NanoStringNorm-1.1.11/NanoStringNorm/R/get.batch.effects.R | 68 -
NanoStringNorm-1.1.11/NanoStringNorm/R/get.trait.summary.stats.R | 22
NanoStringNorm-1.1.11/NanoStringNorm/R/get.ttest.and.foldchange.R | 6
NanoStringNorm-1.1.11/NanoStringNorm/R/norm.comp.R | 2
NanoStringNorm-1.1.11/NanoStringNorm/R/probe.correction.factor.normalization.R | 2
NanoStringNorm-1.1.11/NanoStringNorm/R/read.markup.RCC.R | 4
NanoStringNorm-1.1.11/NanoStringNorm/R/read.xls.RCC.R | 5
NanoStringNorm-1.1.11/NanoStringNorm/R/sample.content.normalization.R | 16
NanoStringNorm-1.1.11/NanoStringNorm/inst/doc/NanoStringNorm_Introduction.Rnw | 109 +-
NanoStringNorm-1.1.11/NanoStringNorm/inst/doc/NanoStringNorm_Introduction.pdf |binary
NanoStringNorm-1.1.11/NanoStringNorm/man/NanoStringNorm.Rd | 2
NanoStringNorm-1.1.11/NanoStringNorm/man/Plot.NanoStringNorm.Rd | 8
NanoStringNorm-1.1.11/NanoStringNorm/vignettes/NanoStringNorm_Introduction.Rnw | 109 +-
31 files changed, 500 insertions(+), 341 deletions(-)
Permanent link
Title: Bayesian thresholds mixed-effects models for categorical data
Diff between Bayesthresh versions 0.1.1 dated 2012-08-16 and 0.2 dated 2012-10-01
Description: This package fits a linear mixed model for ordinal
categorical responses using Bayesian inference via Monte Carlo
Markov Chains. Default is Nandran & Chen algorithm using
Gaussian link function and saving just the summaries of the
chains. Among the options, package allow for two other options
of algorithms, for using Student's "t" link function and for
saving the full chains.
Author: Fabio Mathias Correa
Maintainer: Fabio Mathias Correa
ChangeLog |only
DESCRIPTION | 8 ++++----
MD5 | 11 ++++++-----
R/Bayes.factor.R | 16 +++++++++++++++-
R/Bayesthresh.R | 2 +-
man/Bayes.factor.Rd | 10 +++++-----
man/Bayesthresh.Rd | 11 +++++------
7 files changed, 36 insertions(+), 22 deletions(-)
Title: JSON for R
Diff between rjson versions 0.2.9 dated 2012-07-23 and 0.2.10 dated 2012-10-01
Description: Converts R object into JSON objects and vice-versa
Author: Alex Couture-Beil
Maintainer: Alex Couture-Beil
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/json.R | 6 +++---
inst/changelog.txt | 3 +++
inst/doc/json_rpc_server.pdf |binary
src/dump.cpp | 20 ++++++++++++--------
6 files changed, 27 insertions(+), 20 deletions(-)
Title: R Interface to C API of IBM ILOG CPLEX
Diff between cplexAPI versions 1.2.2 dated 2012-04-24 and 1.2.3 dated 2012-10-01
Description: R Interface to C API of IBM ILOG CPLEX, depends on IBM
ILOG CPLEX (>= 12.1)
Author: Gabriel Gelius-Dietrich [cre]
Maintainer: Gabriel Gelius-Dietrich
DESCRIPTION | 8
MD5 | 25 -
NAMESPACE | 3
R/cplexAPI.R | 13
R/cplexConst.R | 940 +++++++++++++++++++++++-----------------------
configure | 18
configure.ac | 2
inst/NEWS.Rd | 9
inst/c2r.map | 3
inst/doc/cplexAPI.pdf |binary
man/getBestObjValCPLEX.Rd |only
src/cplexAPI.c | 40 +
src/cplexAPI.h | 4
src/init.c | 1
14 files changed, 561 insertions(+), 505 deletions(-)
Title: Building Kriging models from FANOVA graphs
Diff between fanovaGraph versions 1.3 dated 2012-07-20 and 1.3.1 dated 2012-10-01
Description: Estimation and plotting of a function's FANOVA graph to
identify the interaction structure and fitting, prediction and
simulation of a kriging model modified by the identified
structure.
Author: Jana Fruth, Thomas Muehlenstaedt, Olivier Roustant
Maintainer:
CHANGELOG | 6 +
DESCRIPTION | 10 +-
MD5 | 13 ++-
R/estimateGraph.R | 152 ++++++++++++++++++++++-----------------------
inst |only
man/fanovaGraph-package.Rd | 8 +-
man/simAdd.Rd | 2
tests |only
8 files changed, 100 insertions(+), 91 deletions(-)
Title: Moving Epidemics Method R Package.
Diff between mem versions 1.0 dated 2010-11-26 and 1.2 dated 2012-10-01
Description: Modelization of influenza epidemics in order to monitor
future activity.
Author: Jose E. Lozano Alonso
Maintainer: Jose E. Lozano Alonso
DESCRIPTION | 10 +++++-----
MD5 |only
R/calcular.map.R | 1 -
R/calcular.optimo.R | 1 -
R/calcular.optimo.criterio.R | 1 -
R/calcular.optimo.derivada.R | 1 -
R/calcular.optimo.original.R | 1 -
R/calcular.optimo.pendiente.R | 1 -
R/epimem.R | 9 ++++++---
R/epitiming.R | 7 +++----
R/extraer.datos.curva.map.R | 1 -
R/extraer.datos.optimo.map.R | 1 -
R/extraer.datos.post.epi.R | 1 -
R/extraer.datos.pre.epi.R | 1 -
R/fill.missing.R | 1 -
R/iconfianza.R | 1 -
R/iconfianza.aritmetica.R | 1 -
R/iconfianza.geometrica.R | 1 -
R/iconfianza.logx.R | 1 -
R/iconfianza.percentil.boot.R | 1 -
R/iconfianza.percentil.kc.R | 1 -
R/iconfianza.x.R | 1 -
R/influenza.R | 19 ++++++++++++-------
R/localizar.epidemia.R | 3 +--
R/max.fix.na.R | 1 -
R/max.n.valores.R | 1 -
R/min.fix.na.R | 1 -
R/min.n.valores.R | 1 -
R/missings.inside.R | 1 -
R/normalizar.R | 1 -
R/output.ci.R | 1 -
R/plot.epidemic.R | 25 +++++++++++++++----------
R/plot.flu.R | 3 +--
R/print.epidemic.R | 13 ++++++-------
R/print.flu.R | 14 +++++++++-----
R/semana.absoluta.R | 1 -
R/suavizado.R | 1 -
R/summary.epidemic.R | 21 ++++++++++-----------
R/summary.flu.R | 41 +++++++++++++++++++++++++++--------------
data/flucyl.rda |binary
man/epimem.Rd | 11 +++++++++--
man/epitiming.Rd | 5 +++--
man/mem-package.Rd | 11 ++++++-----
43 files changed, 113 insertions(+), 106 deletions(-)
Title: Utilities for processing Rd objects and files
Diff between gbRd versions 0.4-1 dated 2011-07-25 and 0.4-11 dated 2012-10-01
Description: Provides utilities for processing Rd objects and files.
Extract argument descriptions and other parts of the help pages
of functions.
Author: Georgi N. Boshnakov
Maintainer: Georgi N. Boshnakov
gbRd-0.4-1/gbRd/man/Rdo_empty.Rd |only
gbRd-0.4-11/gbRd/DESCRIPTION | 9 -
gbRd-0.4-11/gbRd/MD5 |only
gbRd-0.4-11/gbRd/R/Rdutils.R | 247 +++++++++++++++--------------------
gbRd-0.4-11/gbRd/man/Rd_fun.Rd | 82 ++++++-----
gbRd-0.4-11/gbRd/man/Rd_help2txt.Rd | 35 ++--
gbRd-0.4-11/gbRd/man/Rd_title.Rd | 18 +-
gbRd-0.4-11/gbRd/man/Rdo_args2txt.Rd | 6
gbRd-0.4-11/gbRd/man/Rdo_create.Rd | 44 ++----
gbRd-0.4-11/gbRd/man/Rdo_get_args.Rd | 17 +-
gbRd-0.4-11/gbRd/man/Rdo_section.Rd | 13 -
gbRd-0.4-11/gbRd/man/gbRd-package.Rd | 32 +++-
12 files changed, 250 insertions(+), 253 deletions(-)
More information about AncestryMapper at CRAN
Permanent link
Title: Seamless R and C++ Integration
Diff between Rcpp versions 0.9.13 dated 2012-06-29 and 0.9.14 dated 2012-10-01
Description: The Rcpp package provides R functions as well as a C++
library which facilitate the integration of R and C++.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ... The "Rcpp-introduction" vignette
provides a good entry point to Rcpp.
Conversion from C++ to R and back is driven by the templates Rcpp::wrap
and Rcpp::as which are highly flexible and extensible, as
documented in the "Rcpp-extending" vignette.
Rcpp also provides Rcpp modules, a framework that allows exposing C++
functions and classes to the R level. The "Rcpp-modules"
vignette details the current set of features of Rcpp-modules.
Rcpp includes a concept called Rcpp sugar that brings many R functions
into C++. Sugar takes advantage of lazy evaluation and
expression templates to achieve great performance while
exposing a syntax that is much nicer to use than the equivalent
low-level loop code. The "Rcpp-sugar" vignette gives an
overview of the feature.
Several examples are included, and more than 785 unit tests in over 357
unit test functions provide additional usage examples.
An earlier version of Rcpp, containing what we now call the 'classic
Rcpp API' was written during 2005 and 2006 by Dominick Samperi.
This code has been factored out of Rcpp into the package
RcppClassic, and it is still available for code relying on the
older interface. New development should always use this Rcpp
package instead.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel
Rcpp-0.9.13/Rcpp/inst/NEWS |only
Rcpp-0.9.14/Rcpp/ChangeLog | 48 ++++++
Rcpp-0.9.14/Rcpp/DESCRIPTION | 10 -
Rcpp-0.9.14/Rcpp/MD5 | 47 +++---
Rcpp-0.9.14/Rcpp/R/bib.R | 4
Rcpp-0.9.14/Rcpp/TODO | 2
Rcpp-0.9.14/Rcpp/inst/NEWS.Rd |only
Rcpp-0.9.14/Rcpp/inst/doc/Makefile | 6
Rcpp-0.9.14/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary
Rcpp-0.9.14/Rcpp/inst/doc/Rcpp-extending.pdf |binary
Rcpp-0.9.14/Rcpp/inst/doc/Rcpp-introduction.pdf |binary
Rcpp-0.9.14/Rcpp/inst/doc/Rcpp-modules.pdf |binary
Rcpp-0.9.14/Rcpp/inst/doc/Rcpp-package.pdf |binary
Rcpp-0.9.14/Rcpp/inst/doc/Rcpp-quickref.pdf |binary
Rcpp-0.9.14/Rcpp/inst/doc/Rcpp-sugar.pdf |binary
Rcpp-0.9.14/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary
Rcpp-0.9.14/Rcpp/inst/doc/Rcpp.bib | 59 ++++----
Rcpp-0.9.14/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.html | 10 -
Rcpp-0.9.14/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.txt | 69 +++++-----
Rcpp-0.9.14/Rcpp/inst/include/Rcpp/Module.h | 2
Rcpp-0.9.14/Rcpp/inst/include/Rcpp/config.h | 9 +
Rcpp-0.9.14/Rcpp/inst/include/Rcpp/sugar/functions/math.h | 19 +-
Rcpp-0.9.14/Rcpp/inst/include/Rcpp/sugar/functions/sign.h | 9 -
Rcpp-0.9.14/Rcpp/inst/unitTests/runit.sugar.R | 51 +++++++
Rcpp-0.9.14/Rcpp/inst/unitTests/runit.sugarOps.R |only
Rcpp-0.9.14/Rcpp/src/exceptions.cpp | 6
26 files changed, 239 insertions(+), 112 deletions(-)
Title: Complete Environment for Bayesian Inference
Diff between LaplacesDemon versions 12.09.03 dated 2012-09-03 and 12.10.01 dated 2012-10-01
Description: Laplace's Demon is a complete environment for Bayesian
inference.
Author: Byron Hall
Maintainer: Byron Hall
CHANGELOG | 13
DESCRIPTION | 8
MD5 | 40 +--
NAMESPACE | 1
R/Consort.R | 57 +++-
R/Juxtapose.R | 3
R/LaplaceApproximation.R | 1
R/LaplacesDemon.R | 262 +++++++++++++++++++-
R/distributions.R | 8
R/joint.pr.plot.R |only
inst/doc/BayesianInference.Stex | 81 +++---
inst/doc/BayesianInference.pdf |binary
inst/doc/Examples.Stex | 471 +++++++++++++++++++-----------------
inst/doc/Examples.pdf |binary
inst/doc/LaplacesDemonTutorial.Stex | 183 ++++++++-----
inst/doc/LaplacesDemonTutorial.pdf |binary
inst/doc/References.bib | 29 ++
man/LaplacesDemon-package.Rd | 4
man/LaplacesDemon.Rd | 116 ++++++--
man/Validate.Rd | 4
man/joint.pr.plot.Rd |only
man/p.interval.Rd | 6
22 files changed, 873 insertions(+), 414 deletions(-)
Title: loop decomposition of weighted directed graphs for life cycle
analysis, providing flexbile network plotting methods, and
analyzing food chain properties in ecology
Diff between loop versions 1.0 dated 2012-06-24 and 1.1 dated 2012-10-01
Description: The program can perform loop analysis and plot network
structure (especially for food webs),including minimum spanning
tree, loop decomposition of weighted directed graphs, and other
network properties which may be related to food chain
properties in ecology.
Author: Youhua Chen
Maintainer: Youhua Chen
DESCRIPTION | 22 +++----
MD5 | 49 ++++++++-------
R/loop.R | 146 ++++++++++++++++++++++++++++++++++++-----------
man/convertion.Rd | 2
man/decomp.Rd | 2
man/find.ranks.Rd |only
man/fplot.Rd | 9 ++
man/fplot.foodweb.Rd | 9 ++
man/gplot.Rd | 9 ++
man/gplot1.Rd | 9 ++
man/groupplot.Rd | 2
man/groupplot.foodweb.Rd | 2
man/largest.weight.Rd | 6 -
man/lclw.Rd | 10 +--
man/longest.chain.Rd | 10 +--
man/loop-package.Rd | 2
man/loop.forward.Rd | 2
man/loop.random.Rd | 2
man/mst.primm.Rd | 2
man/nmds.ordination.Rd | 2
man/node.similarity.Rd | 2
man/pathways.Rd | 2
man/rank.nodes.Rd | 2
man/shortest.chain.Rd | 2
man/smallest.weight.Rd | 2
man/uniquepaths.Rd | 2
26 files changed, 204 insertions(+), 105 deletions(-)