Thu, 04 Oct 2012

Package RcppArmadillo updated to version 0.3.4.3 with previous version 0.3.4.2 dated 2012-09-25

Title: Rcpp integration for Armadillo templated linear algebra library
Description: R and Armadillo integration using Rcpp Armadillo is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. A delayed evaluation approach is employed (during compile time) to combine several operations into one, and to reduce (or eliminate) the need for temporaries. This is accomplished through recursive templates and template meta-programming. This library is useful if C++ has been decided as the language of choice (due to speed and/or integration capabilities), rather than another language. The RcppArmadillo package includes the header files from the templated Armadillo library (currently version 3.4.3). Thus users do not need to install Armadillo itself in order to use RcppArmadillo. This Armadillo integration provides a nice illustration of the capabilities of the Rcpp package for seamless R and C++ integration. Armadillo is licensed under the GNU LGPL version 3 or later, while RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel

Diff between RcppArmadillo versions 0.3.4.2 dated 2012-09-25 and 0.3.4.3 dated 2012-10-04

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Package msap updated to version 1.0.2 with previous version 1.0 dated 2012-09-06

Title: Statistical analysis for Methylation-sensitive Amplification Polymorphism data
Description: Statistical Analyses of Methylation-sensitive Amplification Polymorphism (MSAP) assays.
Author: Andres Perez-Figueroa
Maintainer: Andres Perez-Figueroa

Diff between msap versions 1.0 dated 2012-09-06 and 1.0.2 dated 2012-10-04

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New package freeknotsplines with initial version 1.0
Package: freeknotsplines
Version: 1.0
Date: 2012-10-03
Title: Free-Knot Splines
Author: Steven Spiriti , Philip Smith , Pierre Lecuyer ,
Maintainer: Steven Spiriti
Depends: R (>= 2.14.2), splines, methods
Description: This package is for fitting free-knot splines for data with one independent variable and one dependent variable. Four free-knot spline algorithms are provided for the case where the number of knots is known in advance. A knot-search algorithm is provided for the case where the number of knots is not known in advance. In addition, methods are available to compute the fitted values, the residuals, and the coefficients of the splines, and to plot the results, along with a method to summarize the results.
License: GPL (>= 2)
Packaged: 2012-10-03 18:40:56 UTC; Steven
Repository: CRAN
Date/Publication: 2012-10-04 20:58:12

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New package FRCC with initial version 1.0
Package: FRCC
Type: Package
Title: Fast Regularized Canonical Correlation Analysis
Version: 1.0
Date: 2012-06-25
Author: Raul Cruz-Cano
Maintainer: Raul Cruz-Cano
Description: This package implements the functions associated with Fast Regularized Canonical Correlation Analysis.
License: GPL-2
LazyLoad: yes
Depends: CCP, MASS, calibrate, corpcor
Packaged: 2012-10-04 14:43:30 UTC; raul
Repository: CRAN
Date/Publication: 2012-10-04 19:01:31

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New package waterData with initial version 1.0
Package: waterData
Version: 1.0
Date: 2012-10-01
Title: An R Package for Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic Time Series Data
Author: Karen R. Ryberg and Aldo V. Vecchia
Maintainer: Karen R. Ryberg
License: file LICENSE
Type: Package
LazyLoad: yes
Description: This package imports U.S. Geological Survey (USGS) daily hydrologic data from USGS web services, plots the data, addresses some common data problems, and calculates and plots anomalies.
Depends: R (>= 2.14.1), lattice, latticeExtra, XML
Suggests: xtable, maps, mapdata
URL: http://pubs.usgs.gov/of/2012/1168/
Collate: 'waterData-package.R' 'importDVs.R' 'fillMiss.R' 'summaryStats.R' 'compAnom.R' 'plotAnoms.R'
Packaged: 2012-10-04 15:17:20 UTC; kryberg
Repository: CRAN
Date/Publication: 2012-10-04 16:52:59

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Package TSdata updated to version 2012.10-1 with previous version 2012.8-1 dated 2012-10-02

Title: TSdbi Illustration
Description: TSdata illustrates the various TSdbi packages using time series data from several sources. It also illustrates some simple time series manipulation and plotting using packages tframe and tfplot.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TSdata versions 2012.8-1 dated 2012-10-02 and 2012.10-1 dated 2012-10-04

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Package multitaper updated to version 1.0-2 with previous version 1.0-1 dated 2012-05-18

Title: Multitaper Spectral Analysis
Description: Generates Discrete Prolate Spheroidal Sequences, provides functions and utilities for multitaper spectral analysis and related problems.
Author: Karim Rahim , Wesley Burr
Maintainer: Karim Rahim

Diff between multitaper versions 1.0-1 dated 2012-05-18 and 1.0-2 dated 2012-10-04

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Package lubridate updated to version 1.2.0 with previous version 1.1.0 dated 2012-03-05

Title: Make dealing with dates a little easier
Description: Lubridate makes it easier to work with dates and times by providing functions to identify and parse date-time data, extract and modify components of a date-time (years, months, days, hours, minutes, and seconds), perform accurate math on date-times, handle time zones and Daylight Savings Time. Lubridate has a consistent, memorable syntax, that makes working with dates fun instead of frustrating.
Author: Garrett Grolemund , Hadley Wickham
Maintainer: Garrett Grolemund

Diff between lubridate versions 1.1.0 dated 2012-03-05 and 1.2.0 dated 2012-10-04

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Package lcmm updated to version 1.5.8 with previous version 1.5.7 dated 2012-07-24

Title: Estimation of latent class mixed models, joint latent class mixed models and mixed models for curvilinear outcomes
Description: This package provides functions for the estimation of various latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear outcomes using a maximum likelihood method
Author: Cecile Proust-Lima, Amadou Diakite and Benoit Liquet
Maintainer:

Diff between lcmm versions 1.5.7 dated 2012-07-24 and 1.5.8 dated 2012-10-04

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Package SemiParBIVProbit updated to version 3.2-3 with previous version 3.2-2 dated 2012-06-28

Title: Semiparametric Bivariate Probit Modelling
Description: Routine for fitting bivariate probit models with semiparametric predictors (including linear, nonlinear and nonparametric random effects) in the presence of correlated error equations, endogeneity or sample selection.
Author: Giampiero Marra and Rosalba Radice with contributions from Georgios Papageorgiou
Maintainer: Giampiero Marra

Diff between SemiParBIVProbit versions 3.2-2 dated 2012-06-28 and 3.2-3 dated 2012-10-04

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Package RProtoBuf updated to version 0.2.6 with previous version 0.2.5 dated 2012-08-09

Title: R Interface to the Protocol Buffers API
Description: Protocol Buffers are a way of encoding structured data in an efficient yet extensible format. Google uses Protocol Buffers for almost all of its internal RPC protocols and file formats.
Author: Romain Francois, Dirk Eddelbuettel and Murray Stokely
Maintainer: Dirk Eddelbuettel

Diff between RProtoBuf versions 0.2.5 dated 2012-08-09 and 0.2.6 dated 2012-10-04

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New package fastSOM with initial version 0.9
Package: fastSOM
Type: Package
Version: 0.9
Date: 2012-10-04
Title: Fast Calculation of Spillover Measures
Author: Stefan Kloessner , Sven Wagner
Maintainer: Stefan Kloessner
Suggests: parallel
Description: Functions for computing spillover measures, especially spillover tables and spillover indices, as well as their average, minimal, and maximal values.
License: GPL (>= 2)
Packaged: 2012-10-04 11:14:54 UTC; ww17vssk
Repository: CRAN
Date/Publication: 2012-10-04 11:35:52

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Package rrBlupMethod6 updated to version 1.3 with previous version 1.2 dated 2012-02-27

Title: Re-parametrization of RR-BLUP to allow for a fixed residual variance
Description: rrBlupMethod6 -- Re-parametrization of mixed model formulation to allow for a fixed residual variance when using RR-BLUP for genomwide estimation of marker effects and linear transformation of the adjusted means proposed by Piepho et al.(2011)
Author: Torben Schulz-Streeck, Boubacar Estaghvirou, Frank Technow
Maintainer: Frank Technow

Diff between rrBlupMethod6 versions 1.2 dated 2012-02-27 and 1.3 dated 2012-10-04

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Package QuACN updated to version 1.7.3 with previous version 1.6 dated 2012-06-19

Title: QuACN: Quantitative Analysis of Complex Networks
Description: Quantitative Analysis of Complex Networks. This package offers a set of topological network measures to analyze complex Networks structurally.
Author: Laurin Mueller, Michael Schutte, Karl Kugler, Matthias Dehmer
Maintainer: Laurin Mueller

Diff between QuACN versions 1.6 dated 2012-06-19 and 1.7.3 dated 2012-10-04

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New package NSA with initial version 0.0.31
Package: NSA
Version: 0.0.31
Date: 2012-10-03
Title: Post-normalization of total copy numbers
Author: Maria Ortiz-Estevez , Ander Aranburu , Angel Rubio
Maintainer: Maria Ortiz-Estevez
Depends: R (>= 2.11.1), R.methodsS3 (>= 1.2.0), MASS, matrixStats (>= 0.2.1), R.oo (>= 1.7.3), R.utils (>= 1.4.2), aroma.core (>= 1.6.0), aroma.affymetrix, DNAcopy
Description: Post-normalization of total copy-number estimates.
License: LGPL (>= 2.1)
URL: http://r-forge.r-project.org/projects/snpsprocessing/
LazyLoad: TRUE
biocViews: Infrastructure, Microarray, DNACopyNumber, Preprocessing, aCGH, SNP, CopyNumberVariants
Repository: CRAN
Repository/R-Forge/Project: snpsprocessing
Repository/R-Forge/Revision: 200
Repository/R-Forge/DateTimeStamp: 2012-10-03 11:19:15
Date/Publication: 2012-10-04 09:08:17
Packaged: 2012-10-03 14:19:39 UTC; rforge
X-CRAN-Comment: This package has been archived since the maintainer address bounces and we have no means to contact the maintainer.

More information about NSA at CRAN
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Package extracat updated to version 1.6-1 with previous version 1.5-0 dated 2012-05-15

Title: Categorical Data Visualization and Analysis
Description: graphics and more for categorical data
Author: Alexander Pilhoefer
Maintainer: Alexander Pilhoefer

Diff between extracat versions 1.5-0 dated 2012-05-15 and 1.6-1 dated 2012-10-04

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More information about extracat at CRAN
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Package NBPSeq (with last version 0.1.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-05-26 0.1.6
2011-04-24 0.1.4

Permanent link

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