Title: Read and write TIFF images
Diff between tiff versions 0.1-2 dated 2012-08-31 and 0.1-3 dated 2012-11-05
Description: This package provides an easy and simple way to read,
write and display bitmap images stored in the TIFF format. It
can read and write both files and in-memory raw vectors.
Author: Simon Urbanek
Maintainer: Simon Urbanek
DESCRIPTION | 6 ++---
MD5 | 10 ++++-----
NEWS | 9 ++++++++
R/read.R | 4 +--
man/readTIFF.Rd | 19 ++++++++++++++---
src/read.c | 60 ++++++++++++++++++++++++++++++++++++++++++--------------
6 files changed, 80 insertions(+), 28 deletions(-)
Title: Geographically weighted regression
Diff between spgwr versions 0.6-17 dated 2012-08-22 and 0.6-18 dated 2012-11-05
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Author: Roger Bivand and Danlin Yu, contributions by Tomoki Nakaya,
tricube function based on a contribution by Miquel-Angel
Garcia-Lopez
Maintainer: Roger Bivand
ChangeLog | 309 +++++++++++++++++++++++---------------------------------
DESCRIPTION | 8 -
MD5 | 18 +--
R/gwr.cv.R | 46 +++++---
R/zzz.R | 4
inst/ChangeLog | 309 +++++++++++++++++++++++---------------------------------
man/ggwr.sel.Rd | 2
man/gw.cov.Rd | 2
man/gwr.Rd | 52 +++++++++
man/gwr.cv.Rd | 27 ++++
10 files changed, 375 insertions(+), 402 deletions(-)
Title: Compute scagnostics - scatterplot diagnostics
Diff between scagnostics versions 0.2-3 dated 2009-01-27 and 0.2-4 dated 2012-11-05
Description: Calculates graph theoretic scagnostics. Scagnostics
describe various measures of interest for pairs of variables,
based on their appearance on a scatterplot. They are useful
tool for discovering interesting or unusual scatterplots from a
scatterplot matrix, without having to look at every individual
plot.
Author: Lee Wilkinson
Maintainer: Simon Urbanek
DESCRIPTION | 15 ++++++++++++---
MD5 |only
NEWS |only
inst/java/scagnostics.jar |binary
src-java/scagnostics/Main.java | 21 +++++++++------------
5 files changed, 21 insertions(+), 15 deletions(-)
Title: R/Cassandra interface
Diff between RCassandra versions 0.1-0 dated 2012-05-09 and 0.1-1 dated 2012-11-05
Description: This packages provides a direct interface (without the use
of Java) to the most basic functionality of Apache Cassanda
such as login, updates and queries.
Author: Simon Urbanek
Maintainer: Simon Urbanek
DESCRIPTION | 6 -
MD5 | 11 +-
NEWS |only
R/cass.R | 4 -
man/RC.connect.Rd | 11 ++
man/RC.get.Rd | 35 ++++++---
src/cass.c | 207 ++++++++++++++++++++++++++++++++++++++++--------------
7 files changed, 200 insertions(+), 74 deletions(-)
Title: functions for non-bipartite optimal matching
Diff between nbpMatching versions 1.3.2 dated 2011-10-10 and 1.3.6 dated 2012-11-05
Description: solves Mahalanobis distance matrices
Author: Bo Lu, Robert Greevy, Cole Beck
Maintainer: Cole Beck
nbpMatching-1.3.2/nbpMatching/R/nbpMatching-internal.R |only
nbpMatching-1.3.6/nbpMatching/DESCRIPTION | 12 ++--
nbpMatching-1.3.6/nbpMatching/MD5 | 34 +++++++-------
nbpMatching-1.3.6/nbpMatching/NAMESPACE |only
nbpMatching-1.3.6/nbpMatching/R/assign.grp.R | 13 ++---
nbpMatching-1.3.6/nbpMatching/R/fill.missing.R | 13 ++---
nbpMatching-1.3.6/nbpMatching/R/gendistance.R | 13 ++---
nbpMatching-1.3.6/nbpMatching/R/nonbimatch.R | 13 ++---
nbpMatching-1.3.6/nbpMatching/R/qom.R | 13 ++---
nbpMatching-1.3.6/nbpMatching/man/assign.grp.Rd | 2
nbpMatching-1.3.6/nbpMatching/man/distancematrix.Rd | 2
nbpMatching-1.3.6/nbpMatching/man/fill.missing.Rd | 2
nbpMatching-1.3.6/nbpMatching/man/gendistance.Rd | 2
nbpMatching-1.3.6/nbpMatching/man/nbpMatching-internal.Rd | 1
nbpMatching-1.3.6/nbpMatching/man/nbpMatching-package.Rd | 8 ++-
nbpMatching-1.3.6/nbpMatching/man/nonbimatch.Rd | 2
nbpMatching-1.3.6/nbpMatching/man/qom.Rd | 2
nbpMatching-1.3.6/nbpMatching/man/quantile.Rd | 2
nbpMatching-1.3.6/nbpMatching/src/fcorematch.f | 16 +++++-
19 files changed, 79 insertions(+), 71 deletions(-)
Title: Pharmacometric tools for data preparation, modeling, simulation,
and reporting
Diff between metrumrg versions 5.24 dated 2012-10-25 and 5.25 dated 2012-11-05
Description: Pharmacometric tools for common data preparation tasks,
stratified bootstrap resampling of data sets, NONMEM control
stream creation/editing, NONMEM model execution, creation of
standard and user-defined diagnostic plots, execution and
summary of bootstrap and predictive check results,
implementation of simulations from posterior parameter
distributions, reporting of output tables and creation of
detailed analysis logs.
Author: Tim Bergsma, Bill Knebel, Leonid Gibiansky, Natalie Hsiang
Maintainer: Tim Bergsma
DESCRIPTION | 8 ++---
MD5 | 21 +++++++-------
R/superset.R | 1
inst/example/project/script/script.Rproj |only
man/NONR.Rd | 22 +++++++--------
man/PLOTR.Rd | 2 -
man/compute.cwres.Rd | 44 +++++++++++++++----------------
man/dataSynthesis.Rd | 4 +-
man/fixProblem.Rd | 2 -
man/helpAdminister.Rd | 2 -
man/metrumrg-package.Rd | 4 +-
man/svnIsText.Rd | 2 -
12 files changed, 56 insertions(+), 56 deletions(-)
Title: R graphics device using cairo graphics library for creating
high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG,
PostScript) and display (X11 and Win32) output.
Diff between Cairo versions 1.5-1 dated 2011-12-11 and 1.5-2 dated 2012-11-05
Description: This package provides a Cairo graphics device that can be
use to create high-quality vector (PDF, PostScript and SVG) and
bitmap output (PNG,JPEG,TIFF), and high-quality rendering in
displays (X11 and Win32). Since it uses the same back-end for
all output, copying across formats is WYSIWYG. Files are
created without the dependence on X11 or other external
programs. This device supports alpha channel (semi-transparent
drawing) and resulting images can contain transparent and
semi-transparent regions. It is ideal for use in server
environemnts (file output) and as a replacement for other
devices that don't have Cairo's capabilities such as alpha
support or anti-aliasing. Backends are modular such that any
subset of backends is supported.
Author: Simon Urbanek
Maintainer: Simon Urbanek
DESCRIPTION | 25 +++++++++++++---
MD5 | 23 ++++++++-------
NEWS | 11 +++++++
R/Cairo.R | 6 +++
man/Cairo.capture.Rd |only
man/Cairo.onSave.Rd |only
man/Cairo.serial.Rd |only
src/backend.h | 78 ++++++++++++++++++++++++++-------------------------
src/cairogd.c | 46 ++++++++++++++++++++++++++++++
src/cairogd.h | 2 -
src/cairotalk.c | 45 ++++++++++++++++++++++++++++-
src/pdf-backend.c | 2 -
src/ps-backend.c | 2 -
src/svg-backend.c | 2 -
14 files changed, 185 insertions(+), 57 deletions(-)
Title: Tools for base64 encoding
Diff between base64enc versions 0.1-0 dated 2012-09-08 and 0.1-1 dated 2012-11-05
Description: This package provides tools for handling base64 encoding.
It is more flexible than the orphaned base64 package.
Author: Simon Urbanek
Maintainer: Simon Urbanek
DESCRIPTION | 8 ++++----
MD5 | 7 ++++---
NEWS |only
R/base64.R | 11 ++++++++---
man/base64.Rd | 14 +++++++++-----
5 files changed, 25 insertions(+), 15 deletions(-)
Title: Excel Connector for R
Diff between XLConnect versions 0.2-2 dated 2012-10-15 and 0.2-3 dated 2012-11-05
Description: Manipulate Excel files from R
Author: Mirai Solutions GmbH
Maintainer: Martin Studer
XLConnect-0.2-2/XLConnect/inst/java/XLConnect-0.2-1-sources.jar |only
XLConnect-0.2-2/XLConnect/inst/java/XLConnect-0.2-1.jar |only
XLConnect-0.2-3/XLConnect/DESCRIPTION | 8 +-
XLConnect-0.2-3/XLConnect/MD5 | 36 +++++-----
XLConnect-0.2-3/XLConnect/NEWS | 7 +
XLConnect-0.2-3/XLConnect/R/extractRownames.R | 31 +++++---
XLConnect-0.2-3/XLConnect/R/includeRownames.R | 29 +++++---
XLConnect-0.2-3/XLConnect/R/workbook.readNamedRegion.R | 8 +-
XLConnect-0.2-3/XLConnect/R/workbook.readWorksheet.R | 8 +-
XLConnect-0.2-3/XLConnect/R/writeNamedRegionToFile.R | 4 -
XLConnect-0.2-3/XLConnect/inst/XLConnect.R | 2
XLConnect-0.2-3/XLConnect/inst/doc/XLConnect.Rnw | 5 -
XLConnect-0.2-3/XLConnect/inst/doc/XLConnect.pdf |binary
XLConnect-0.2-3/XLConnect/inst/java/XLConnect-0.2-3-sources.jar |only
XLConnect-0.2-3/XLConnect/inst/java/XLConnect-0.2-3.jar |only
XLConnect-0.2-3/XLConnect/inst/unitTests/runit.workbook.writeNamedRegion.R | 15 ++++
XLConnect-0.2-3/XLConnect/man/XLConnect-package.Rd | 4 -
XLConnect-0.2-3/XLConnect/man/clearNamedRegion-methods.Rd | 7 +
XLConnect-0.2-3/XLConnect/man/clearRange-methods.Rd | 5 -
XLConnect-0.2-3/XLConnect/man/clearRangeFromReference-methods.Rd | 5 -
XLConnect-0.2-3/XLConnect/man/clearSheet-methods.Rd | 6 -
21 files changed, 110 insertions(+), 70 deletions(-)
Title: Interface between GRASS 6+ geographical information system and R
Diff between spgrass6 versions 0.7-10 dated 2012-03-19 and 0.7-12 dated 2012-11-05
Description: Interpreted interface between GRASS 6+ geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 527 +++++++++++++++-------------------------
DESCRIPTION | 8
MD5 | 14 -
R/vect_link.R | 9
inst/ChangeLog | 527 +++++++++++++++-------------------------
inst/doc/OSGeo_vol1_GRASS-R.pdf |binary
inst/doc/spgrass6_0.3.pdf |binary
man/readVECT6.Rd | 2
8 files changed, 430 insertions(+), 657 deletions(-)
Title: Interface to Geometry Engine - Open Source (GEOS)
Diff between rgeos versions 0.2-7 dated 2012-06-29 and 0.2-8 dated 2012-11-05
Description: Interface to Geometry Engine - Open Source (GEOS) using
the C API for topology operations on geometries. The GEOS
library is external to the package, and, when installing the
package from source, must be correctly installed first. Windows
and Mac Intel OS X binaries are provided on CRAN.
Author: Roger Bivand [cre, aut], Colin Rundel [aut], Edzer Pebesma
[ctb], Karl Ove Hufthammer [ctb]
Maintainer: Roger Bivand
ChangeLog | 45 +++++++++++++++++++++++++++++++++++++++++++++
DESCRIPTION | 23 ++++++++++++++---------
MD5 | 30 +++++++++++++++++-------------
NAMESPACE | 3 +--
R/labelpt.R |only
R/rgeos_wkt.R | 13 +++++++++----
inst/ChangeLog | 45 +++++++++++++++++++++++++++++++++++++++++++++
inst/SVN_VERSION | 2 +-
inst/wkts |only
man/comment-functions.Rd | 3 +++
man/labelpt.Rd |only
man/utility-functions.Rd | 16 +++++++++++++++-
src/rgeos.c | 1 +
src/rgeos.h | 2 +-
src/rgeos_R2geosMP.c | 1 +
src/rgeos_coord.c | 2 +-
src/rgeos_poly2nb.c | 2 +-
17 files changed, 155 insertions(+), 33 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.7-20 dated 2012-10-20 and 0.7-22 dated 2012-11-05
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.6.0) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and
Expat) are provided on CRAN.
Author: Timothy H. Keitt
Maintainer: Roger Bivand
ChangeLog | 1206 ++++++++++++++++++++++++++++++++++++++++++++
DESCRIPTION | 9
MD5 | 28 -
NAMESPACE | 5
R/AAA.R | 1
R/Class-CRSx.R | 3
R/gdal.R | 32 +
R/sgdf_gdal.R | 3
R/sp_gdal.R | 23
R/subs.R | 3
inst/ChangeLog | 1206 ++++++++++++++++++++++++++++++++++++++++++++
man/CRS-class.Rd | 9
man/GDALRasterBand-class.Rd | 11
man/projInfo.Rd | 2
man/readGDAL.Rd | 9
15 files changed, 2510 insertions(+), 40 deletions(-)
Title: Choose univariate class intervals
Diff between classInt versions 0.1-18 dated 2012-07-19 and 0.1-19 dated 2012-11-05
Description: A package for choosing univariate class intervals for
mapping or other graphics purposes
Author: Roger Bivand [aut, cre], Hisaji Ono [ctb], Richard Dunlap
[ctb], Matthieu Stigler [ctb]
Maintainer: Roger Bivand
ChangeLog | 12 ++++++++++++
DESCRIPTION | 18 +++++++++++-------
MD5 | 6 +++---
inst/ChangeLog | 12 ++++++++++++
4 files changed, 38 insertions(+), 10 deletions(-)
Title: Choi and Hall Clustering in 3d
Diff between CHsharp versions 0.2 dated 2008-07-30 and 0.3 dated 2012-11-05
Description: Functions that cluster 1-3 dimensional data into their
local modes. Based on a convergent form of Choi and Hall's
(1999) data sharpening method. Note: sharp3dB is much faster
than sharp3d if data is ordered in at least one dimension.
Author: Douglas G. Woolford
Maintainer: W. John Braun
CHsharp-0.2/CHsharp/INDEX |only
CHsharp-0.2/CHsharp/data/d.R |only
CHsharp-0.2/CHsharp/src/sharp3d.f |only
CHsharp-0.3/CHsharp/DESCRIPTION | 18 +++++++++++-------
CHsharp-0.3/CHsharp/MD5 |only
CHsharp-0.3/CHsharp/NAMESPACE |only
CHsharp-0.3/CHsharp/R/sharp3d.R | 29 ++++++++++++++++++++++++++---
CHsharp-0.3/CHsharp/data/d.rda |only
CHsharp-0.3/CHsharp/man/sharp1d.Rd |only
CHsharp-0.3/CHsharp/man/sharp2d.Rd |only
CHsharp-0.3/CHsharp/man/sharp3d.Rd | 21 ++++++++++-----------
CHsharp-0.3/CHsharp/man/sharp3dB.Rd | 2 --
CHsharp-0.3/CHsharp/src/sharpen.f |only
13 files changed, 47 insertions(+), 23 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-01-29 1.4-6
2009-01-27 1.4-5
2007-10-27 1.4-4
2006-11-16 1.4-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-23 2.6.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-03-08 0.0.1-07
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-20 0.4-0
2011-01-20 0.3.0
2008-07-14 0.2.2
2008-05-07 0.2.1
2008-04-25 0.2.0
2008-03-12 0.1.4
2008-02-04 0.1.2
2007-12-30 0.1.1
2007-12-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-05-07 0.1-1.2
2009-02-23 0.1-1.1
2007-04-20 0.1-1
Title: classes and methods for spatio-temporal data
Diff between spacetime versions 0.8-0 dated 2012-09-25 and 1.0-0 dated 2012-11-05
Description: A package with classes and methods for spatio-temporal
data. In particular, space-time regular lattices, sparse
lattices, irregular data, and simple trajectories are
supported. Utility functions are provided for plotting data as
map sequences (lattice or animation) or multiple time series;
for spatial and temporal selection, as well as methods for
retrieving coordinates, for subsetting, print, summary, etc.
Author: Edzer Pebesma [cre, aut], Benedikt Graeler [ctb], Tom Gottfried
[ctb], Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma
spacetime-0.8-0/spacetime/R/Class-STLDF.R |only
spacetime-0.8-0/spacetime/R/STLDF-methods.R |only
spacetime-1.0-0/spacetime/ChangeLog |only
spacetime-1.0-0/spacetime/DESCRIPTION | 28 +--
spacetime-1.0-0/spacetime/MD5 | 89 ++++++------
spacetime-1.0-0/spacetime/NAMESPACE | 2
spacetime-1.0-0/spacetime/R/ST-methods.R | 23 ++-
spacetime-1.0-0/spacetime/R/STFDF-methods.R | 2
spacetime-1.0-0/spacetime/R/STIDF-methods.R | 6
spacetime-1.0-0/spacetime/R/STSDF-methods.R | 5
spacetime-1.0-0/spacetime/R/aggregate.R | 47 +++---
spacetime-1.0-0/spacetime/R/coerce.R | 32 ++++
spacetime-1.0-0/spacetime/R/eof.R | 8 -
spacetime-1.0-0/spacetime/R/plot.R | 20 --
spacetime-1.0-0/spacetime/R/raster.R | 5
spacetime-1.0-0/spacetime/R/stconstruct.R | 8 -
spacetime-1.0-0/spacetime/R/stplot.R | 29 ++--
spacetime-1.0-0/spacetime/R/timematch.R | 22 ++-
spacetime-1.0-0/spacetime/data/air.rda |binary
spacetime-1.0-0/spacetime/data/fires.rda |binary
spacetime-1.0-0/spacetime/demo/00Index | 2
spacetime-1.0-0/spacetime/demo/gvis.R |only
spacetime-1.0-0/spacetime/demo/trip.R |only
spacetime-1.0-0/spacetime/inst/CITATION |only
spacetime-1.0-0/spacetime/inst/doc/cls.eps |only
spacetime-1.0-0/spacetime/inst/doc/jss816.Rnw | 88 +-----------
spacetime-1.0-0/spacetime/inst/doc/jss816.bib | 11 +
spacetime-1.0-0/spacetime/inst/doc/jss816.pdf |binary
spacetime-1.0-0/spacetime/inst/doc/sto.Rnw | 46 +++---
spacetime-1.0-0/spacetime/inst/doc/sto.pdf |binary
spacetime-1.0-0/spacetime/inst/doc/stpg.pdf |binary
spacetime-1.0-0/spacetime/man/ST-class.Rd | 2
spacetime-1.0-0/spacetime/man/STFDF-class.Rd | 1
spacetime-1.0-0/spacetime/man/STIDF-class.Rd | 1
spacetime-1.0-0/spacetime/man/STLDF-class.Rd | 1
spacetime-1.0-0/spacetime/man/STSDF-class.Rd | 1
spacetime-1.0-0/spacetime/man/STTDF-class.Rd | 1
spacetime-1.0-0/spacetime/man/delta.Rd | 1
spacetime-1.0-0/spacetime/man/eof.Rd | 2
spacetime-1.0-0/spacetime/man/over.Rd | 1
spacetime-1.0-0/spacetime/man/stconstruct.Rd | 1
spacetime-1.0-0/spacetime/man/stplot.Rd | 6
spacetime-1.0-0/spacetime/man/timematch.Rd | 1
spacetime-1.0-0/spacetime/tests/basic.R | 19 +-
spacetime-1.0-0/spacetime/tests/basic.Rout.save | 169 ++++++++++++------------
spacetime-1.0-0/spacetime/tests/over.R | 9 -
spacetime-1.0-0/spacetime/tests/over.Rout.save | 29 +---
spacetime-1.0-0/spacetime/tests/traj.R | 45 ------
spacetime-1.0-0/spacetime/tests/traj.Rout.save | 93 -------------
49 files changed, 381 insertions(+), 475 deletions(-)
Title: Iterated Conditional Expectation
Diff between ICE versions 0.66 dated 2012-03-20 and 0.68 dated 2012-11-05
Description: Kernel Estimators for Interval-Censored Data
Author: W. John Braun
Maintainer:
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
NAMESPACE | 8 ++------
R/ickde.R | 6 +++---
data/ICGG.rda |binary
data/ICHemophiliac.rda |binary
data/motor.IC.rda |binary
man/bickde.Rd | 7 +++----
man/ickde.Rd | 1 -
9 files changed, 20 insertions(+), 26 deletions(-)
Title: A package for statistical analysis in epidemiology.
Diff between Epi versions 1.1.36 dated 2012-06-29 and 1.1.40 dated 2012-11-05
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data,
including interval censored data and representation of
multistate data. Also some useful functions for tabulation and
plotting. Contains some epidemiological datasets.
Author: Bendix Carstensen [aut, cre], Martyn Plummer [aut], Michael
Hills [aut], Esa Laara [ctb]
Maintainer: Bendix Carstensen
CHANGES | 28 ++
DESCRIPTION | 12 -
MD5 | 74 +++---
NAMESPACE | 46 ++--
R/Relevel.R | 30 ++
R/ci.pd.R | 12 -
R/effx.r | 112 +++++-----
R/factorize.R | 42 +--
data/B.dk.rda |binary
data/DMconv.rda |binary
data/DMlate.rda |binary
data/DMrand.rda |binary
data/M.dk.rda |binary
data/N.dk.rda |binary
data/S.typh.rda |binary
data/Y.dk.rda |binary
data/bdendo.rda |binary
data/bdendo11.rda |binary
data/births.rda |binary
data/blcaIT.rda |binary
data/brv.rda |binary
data/diet.rda |binary
data/ewrates.rda |binary
data/gmortDK.rda |binary
data/hivDK.rda |binary
data/lep.rda |binary
data/lungDK.rda |binary
data/mortDK.rda |binary
data/nickel.rda |binary
data/occup.rda |binary
data/thoro.rda |binary
inst/doc/Follow-up.pdf | 539 +++++++++++++++++++++++++------------------------
man/DMlate.Rd | 17 -
man/MS.boxes.Rd | 2
man/Relevel.Rd | 12 -
man/effx.Rd | 56 ++---
man/foreign.Lexis.Rd | 5
man/transform.Lexis.Rd | 18 +
38 files changed, 549 insertions(+), 456 deletions(-)
Title: Sequential Parameter Optimization
Diff between SPOT versions 1.0.2661 dated 2012-06-24 and 1.0.2662 dated 2012-11-05
Description: R-Package for Sequential Parameter Optimization Toolbox
Author: T. Bartz-Beielstein with contributions from: J. Ziegenhirt, W.
Konen, O. Flasch, M. Friese, P. Koch, M. Zaefferer, B. Naujoks
Maintainer: Martin Zaefferer
DESCRIPTION | 10 +++++-----
MD5 | 20 ++++++++++----------
NEWS | 3 +++
R/spot.R | 4 ++--
R/spotReportDefault.R | 8 ++++++--
inst/demo12Sann/sann0001.apd | 2 +-
inst/demo12Sann/sann0001.conf | 2 +-
inst/doc/SPOT.Rnw | 7 ++++---
inst/doc/SPOT.pdf |binary
inst/doc/index.html | 1 +
man/SPOT-package.Rd | 2 +-
11 files changed, 34 insertions(+), 25 deletions(-)
Title: Spatially explicit capture-recapture
Diff between secr versions 2.3.2 dated 2012-05-15 and 2.4.0 dated 2012-11-05
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive
detectors, such as traps, or by searching polygons or
transects. Models incorporating distance-dependent detection
are fitted by maximizing the likelihood. Tools are included for
data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford
DESCRIPTION | 12
MD5 | 159 ++++++------
NAMESPACE | 12
NEWS | 99 +++++++
R/DENSITY.R | 21 +
R/Dsurface.R | 21 +
R/LLsurface.secr.R | 19 +
R/confint.secr.R | 2
R/derivedMS.R | 252 +++++++++++++++----
R/esa.R | 91 ++++--
R/functions.R | 482 ++++++++-----------------------------
R/fxi.R | 59 ++++
R/ip.secr.R | 52 +++
R/join.R | 68 ++++-
R/make.capthist.R | 14 -
R/make.grid.R | 12
R/mash.r |only
R/mask.check.R | 131 ++++++----
R/methods.R | 388 ++++++++++++++++++++---------
R/plot.secr.R | 85 ------
R/randomHabitat.r | 2
R/rbind.capthist.R | 3
R/regionN.R | 3
R/score.test.R | 22 +
R/secr.design.MS.R | 36 +-
R/secr.fit.R | 61 ++++
R/sim.capthist.R | 75 +++--
R/sim.secr.R | 26 +
R/split.capthist.R | 31 +-
R/split.traps.R |only
R/suggest.buffer.R | 73 +++--
R/telemetry.R |only
R/trap.builder.R | 96 -------
R/utility.R | 393 +++++++++++++++++++++++++++++-
R/verify.R | 35 ++
data/deermouse.RData |binary
data/hornedlizard.RData |binary
data/housemouse.RData |binary
data/ovenbird.RData |binary
data/ovensong.RData |binary
data/possum.RData |binary
data/secrdemo.RData |binary
data/skink.RData |binary
data/stoatDNA.RData |binary
inst/doc/secr-datainput.pdf |binary
inst/doc/secr-densitysurfaces.pdf |binary
inst/doc/secr-finitemixtures.pdf |binary
inst/doc/secr-manual.pdf |binary
inst/doc/secr-overview.pdf |binary
inst/doc/secr-polygondetectors.pdf |binary
inst/doc/secr-sound.pdf |binary
man/FAQ.Rd | 26 +
man/LLsurface.Rd | 46 +--
man/Parallel.Rd |only
man/RMarkInput.Rd | 37 ++
man/addTelemetry.Rd |only
man/capthistfn.Rd | 14 -
man/circular.Rd | 4
man/confint.secr.Rd | 3
man/derivedMS.Rd | 6
man/empirical.Rd | 4
man/ip.secr.Rd | 6
man/make.traps.Rd | 16 -
man/mask.check.Rd | 28 +-
man/plot.capthist.Rd | 2
man/randomHabitat.Rd | 3
man/region.N.Rd | 5
man/score.test.Rd | 11
man/secr-package.Rd | 4
man/secr.fit.Rd | 24 +
man/secr.model.detection.Rd | 3
man/signalmatrix.Rd |only
man/sim.secr.Rd | 13
man/spacing.Rd | 7
man/stoatDNA.Rd | 8
man/subset.capthist.Rd | 18 +
man/subset.mask.Rd | 10
man/subset.traps.Rd | 18 -
man/suggest.buffer.Rd | 36 +-
man/timevaryingcov.Rd |only
man/writeGPS.Rd | 8
src/secr.c | 267 +++++++++++---------
src/secr.h | 18 +
src/trapping.c | 90 ++++++
84 files changed, 2325 insertions(+), 1245 deletions(-)
Title: Non-supervised Regional Frequency Analysis
Diff between nsRFA versions 0.7-4 dated 2012-07-22 and 0.7-7 dated 2012-11-05
Description: A collection of statistical tools for objective
(non-supervised) applications of the Regional Frequency
Analysis methods in hydrology. The package refers to the
index-value method and, more precisely, helps the hydrologist
to: (1) regionalize the index-value; (2) form homogeneous
regions with similar growth curves; (3) fit distribution
functions to the empirical regional growth curves.
Author: Alberto Viglione
Maintainer: Alberto Viglione
DESCRIPTION | 8 ++++----
MD5 | 18 +++++++++---------
R/DIAGNOSTICS.R | 2 +-
R/HW.original.R | 11 ++++++++++-
R/KAPPA.R | 2 +-
inst/doc/Fig11GriffisStedinger.pdf |binary
inst/doc/Fig1ElamirSeheult.pdf |binary
inst/doc/MSClaio2008.pdf |binary
inst/doc/nsRFA_ex01.pdf |binary
inst/doc/nsRFA_ex02.pdf |binary
10 files changed, 25 insertions(+), 16 deletions(-)
Title: Complete Environment for Bayesian Inference
Diff between LaplacesDemon versions 12.10.01 dated 2012-10-01 and 12.11.05 dated 2012-11-05
Description: Laplace's Demon is a complete environment for Bayesian
inference.
Author: Statisticat, LLC
Maintainer: Statisticat, LLC
CHANGELOG | 8
DESCRIPTION | 14 -
MD5 | 238 ++++++++++----------
NAMESPACE | 4
R/BayesTheorem.R | 4
R/CSF.R | 4
R/Gelfand.Diagnostic.R |only
R/Geweke.Diagnostic.R | 29 +-
R/distributions.R | 23 +
R/plot.demonoid.R | 25 +-
R/summary.demonoid.ppc.R | 2
R/summary.laplace.ppc.R | 2
R/summary.pmc.ppc.R | 2
inst/doc/BayesianInference.Stex | 27 +-
inst/doc/BayesianInference.pdf |binary
inst/doc/Examples.Stex | 15 -
inst/doc/Examples.pdf |binary
inst/doc/LaplacesDemonTutorial.Stex | 21 -
inst/doc/LaplacesDemonTutorial.pdf |binary
inst/doc/References.bib | 12 -
man/ABB.Rd | 4
man/BayesFactor.Rd | 9
man/BayesTheorem.Rd | 6
man/BayesianBootstrap.Rd | 4
man/CSF.Rd | 5
man/CenterScale.Rd | 3
man/Combine.Rd | 3
man/Consort.Rd | 5
man/ESS.Rd | 3
man/Elicitation.Rd | 5
man/GIV.Rd | 6
man/Gelfand.Diagnostic.Rd |only
man/Geweke.Diagnostic.Rd | 3
man/IAT.Rd | 5
man/Importance.Rd | 5
man/Juxtapose.Rd | 3
man/KLD.Rd | 5
man/KS.Diagnostic.Rd | 5
man/LML.Rd | 5
man/LPL.interval.Rd | 4
man/LaplaceApproximation.Rd | 7
man/LaplacesDemon-package.Rd | 12 -
man/LaplacesDemon.RAM.Rd | 6
man/LaplacesDemon.Rd | 7
man/Levene.Test.Rd | 5
man/MCSE.Rd | 5
man/Math.Rd | 6
man/Matrices.Rd | 2
man/Mode.Rd | 2
man/Model.Spec.Time.Rd | 16 -
man/PMC.RAM.Rd | 6
man/PMC.Rd | 5
man/PosteriorChecks.Rd | 3
man/Precision.Rd | 3
man/SIR.Rd | 5
man/Stick.Rd | 5
man/Thin.Rd | 5
man/Validate.Rd | 6
man/as.covar.Rd | 6
man/as.initial.values.Rd | 6
man/as.parm.names.Rd | 6
man/as.ppc.Rd | 6
man/burnin.Rd | 5
man/caterpillar.plot.Rd | 6
man/de.Finetti.Game.Rd | 6
man/dist.Categorical.Rd | 14 -
man/dist.Dirichlet.Rd | 2
man/dist.HalfCauchy.Rd | 7
man/dist.Inverse.Gaussian.Rd | 7
man/dist.Laplace.Precision.Rd | 3
man/dist.Log.Normal.Precision.Rd | 3
man/dist.Multivariate.Cauchy.Cholesky.Rd | 3
man/dist.Multivariate.Cauchy.Precision.Cholesky.Rd | 3
man/dist.Multivariate.Cauchy.Precision.Rd | 3
man/dist.Multivariate.Cauchy.Rd | 3
man/dist.Multivariate.Laplace.Cholesky.Rd | 2
man/dist.Multivariate.Laplace.Rd | 2
man/dist.Multivariate.Normal.Cholesky.Rd | 3
man/dist.Multivariate.Normal.Precision.Cholesky.Rd | 3
man/dist.Multivariate.Normal.Precision.Rd | 3
man/dist.Multivariate.Normal.Rd | 3
man/dist.Multivariate.Polya.Rd | 2
man/dist.Multivariate.Power.Exponential.Cholesky.Rd | 2
man/dist.Multivariate.Power.Exponential.Rd | 2
man/dist.Multivariate.t.Cholesky.Rd | 3
man/dist.Multivariate.t.Precision.Cholesky.Rd | 3
man/dist.Multivariate.t.Precision.Rd | 3
man/dist.Multivariate.t.Rd | 3
man/dist.Normal.Precision.Rd | 3
man/dist.Normal.Variance.Rd | 3
man/interval.Rd | 3
man/is.appeased.Rd | 3
man/is.class.Rd | 3
man/is.constant.Rd | 3
man/is.constrained.Rd | 3
man/is.data.Rd | 3
man/is.model.Rd | 3
man/is.proper.Rd | 3
man/is.stationary.Rd | 3
man/joint.density.plot.Rd | 3
man/joint.pr.plot.Rd | 6
man/log-log.Rd | 3
man/p.interval.Rd | 4
man/plot.demonoid.Rd | 10
man/plot.demonoid.ppc.Rd | 5
man/plot.importance.Rd | 5
man/plot.juxtapose.Rd | 6
man/plot.laplace.Rd | 6
man/plot.laplace.ppc.Rd | 5
man/plot.pmc.Rd | 6
man/plot.pmc.ppc.Rd | 5
man/plotMatrix.Rd | 4
man/predict.demonoid.Rd | 6
man/predict.laplace.Rd | 6
man/predict.pmc.Rd | 6
man/print.demonoid.Rd | 6
man/print.laplace.Rd | 6
man/print.pmc.Rd | 6
man/summary.demonoid.ppc.Rd | 5
man/summary.laplace.ppc.Rd | 5
man/summary.pmc.ppc.Rd | 5
121 files changed, 371 insertions(+), 528 deletions(-)
Title: Homogeneity tests for Regional Frequency Analysis
Diff between homtest versions 1.0-4 dated 2009-03-26 and 1.0-5 dated 2012-11-05
Description: A collection of homogeneity tests described in: Viglione
A., Laio F., Claps P. (2007) ``A comparison of homogeneity
tests for regional frequency analysis'', Water Resources
Research, 43, W03428, doi:10.1029/2006WR005095. More on
Regional Frequency Analysis can be found in package nsRFA.
Author: Alberto Viglione
Maintainer: Alberto Viglione
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
data/annualflows.rda |binary
man/GEV.Rd | 3 +--
man/GUMBEL.Rd | 3 +--
6 files changed, 6 insertions(+), 8 deletions(-)
Title: Interactive exploratory spatial data analysis
Diff between GeoXp versions 1.6.0 dated 2012-09-04 and 1.6.1 dated 2012-11-05
Description: GeoXp is a tool for researchers in spatial statistics,
spatial econometrics, geography, ecology etc allowing to link
dynamically statistical plots with elementary maps. This
coupling consists in the fact that the selection of a zone on
the map results in the automatic highlighting of the
corresponding points on the statistical graph or reversely the
selection of a portion of the graph results in the automatic
highlighting of the corresponding points on the map. GeoXp
includes tools from different areas of spatial statistics
including geostatistics as well as spatial econometrics and
point processes. Besides elementary plots like boxplots,
histograms or simple scatterplot, GeoXp also couples with maps
Moran scatterplots, variogram cloud, Lorentz Curves,...In order
to make the most of the multidimensionality of the data, GeoXp
includes some dimension reduction techniques such as PCA.
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne
Ruiz-Gazen, Christine Thomas-Agnan
Maintainer: Thibault Laurent
GeoXp-1.6.0/GeoXp/inst/doc/Thumbs.db |only
GeoXp-1.6.1/GeoXp/DESCRIPTION | 11
GeoXp-1.6.1/GeoXp/GeoXp-Ex.R | 444 +++++++++++++++++++++-
GeoXp-1.6.1/GeoXp/MD5 | 33 -
GeoXp-1.6.1/GeoXp/NAMESPACE | 1
GeoXp-1.6.1/GeoXp/R/angleplotmap.R | 36 -
GeoXp-1.6.1/GeoXp/R/carte.R | 55 +-
GeoXp-1.6.1/GeoXp/R/ginimap.R | 4
GeoXp-1.6.1/GeoXp/R/graphique.R | 97 +---
GeoXp-1.6.1/GeoXp/R/histnbmap.r | 10
GeoXp-1.6.1/GeoXp/R/histomap.R | 1
GeoXp-1.6.1/GeoXp/R/scattermap.R | 49 +-
GeoXp-1.6.1/GeoXp/R/variocloudmap.R | 35 -
GeoXp-1.6.1/GeoXp/inst/doc/presentation_geoxp.pdf |binary
GeoXp-1.6.1/GeoXp/man/GeoXp-package.Rd | 4
GeoXp-1.6.1/GeoXp/man/angleplotmap.Rd | 6
GeoXp-1.6.1/GeoXp/man/scattermap.Rd | 8
GeoXp-1.6.1/GeoXp/man/variocloudmap.Rd | 6
18 files changed, 618 insertions(+), 182 deletions(-)
Title: C++ classes to embed R in C++ applications
Diff between RInside versions 0.2.8 dated 2012-09-08 and 0.2.9 dated 2012-11-05
Description: C++ classes to embed R in C++ applications The RInside
packages makes it easier to have 'R inside' your C++
application by providing a C++ wrapper class providing the R
interpreter.
As R itself is embedded into your application, a shared library build
of R is required. This works on Linux, OS X and even on Windows
provided you use the same tools used to build R itself.
Numerous examples are provided in the six subdirectories of the
examples/ directory of the installed package: standard, mpi
(for parallel computing) qt (showing how to embed RInside
inside a Qt GUI application), wt (showing how to build a
'web-application' using the Wt toolkit), armadillo (for RInside
use with RcppArmadillo) and eigen (for RInside use with
RcppEigen).
Doxygen-generated documentation of the C++ classes is available at the
RInside website as well.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel
ChangeLog | 59 ++++++++++++++++++++
DESCRIPTION | 8 +-
MD5 | 33 ++++++-----
cleanup | 13 ++--
inst/NEWS.Rd | 25 +++++++-
inst/THANKS | 1
inst/examples/armadillo/cmake/CMakeLists.txt | 38 +++++++++---
inst/examples/armadillo/cmake/WIN.readme.txt |only
inst/examples/eigen/cmake/CMakeLists.txt | 20 ++++++
inst/examples/eigen/cmake/WIN.readme.txt |only
inst/examples/qt/qtdensity.cpp | 4 -
inst/examples/standard/Makefile.win | 10 +++
inst/examples/standard/cmake/CMakeLists.txt | 44 +++++++++------
inst/examples/standard/rinside_sample13.cpp |only
inst/examples/standard/rinside_sample14.cpp |only
inst/examples/standard/rinside_test2.cpp |only
inst/examples/wt/wtdensity.cpp | 4 -
inst/include/RInside.h | 43 ++++++++------
src/Makevars.win | 48 ++++++++--------
src/RInside.cpp | 79 +++++++++++++++++----------
20 files changed, 304 insertions(+), 125 deletions(-)
Title: Tools for reading and handling spatial objects
Diff between maptools versions 0.8-16 dated 2012-06-29 and 0.8-18 dated 2012-11-05
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Jonathan Callahan, German Carrillo, Stéphane Dray, David
Forrest, Michael Friendly, Patrick Giraudoux, Duncan Golicher,
Virgilio Gómez Rubio, Patrick Hausmann, Karl Ove Hufthammer,
Thomas Jagger, Sebastian P. Luque, Don MacQueen, Andrew
Niccolai, Oscar Perpinan Lamigueiro, Tom Short, Greg Snow, Ben
Stabler and Rolf Turner
Maintainer: Roger Bivand
maptools-0.8-16/maptools/R/pointLabel.R |only
maptools-0.8-16/maptools/man/pointLabel.Rd |only
maptools-0.8-18/maptools/ChangeLog | 35 +++++
maptools-0.8-18/maptools/DESCRIPTION | 19 +-
maptools-0.8-18/maptools/MD5 | 34 ++---
maptools-0.8-18/maptools/NAMESPACE | 6
maptools-0.8-18/maptools/R/Rgshhs.R | 6
maptools-0.8-18/maptools/R/lineLabel.R |only
maptools-0.8-18/maptools/R/midpoint.R | 2
maptools-0.8-18/maptools/R/pointLabelBase.R |only
maptools-0.8-18/maptools/R/pointLabelLattice.R |only
maptools-0.8-18/maptools/R/spatstat1.R | 17 ++
maptools-0.8-18/maptools/inst/ChangeLog | 35 +++++
maptools-0.8-18/maptools/man/Rgshhs.Rd | 3
maptools-0.8-18/maptools/man/SpatialLines2PolySet.Rd | 5
maptools-0.8-18/maptools/man/lineLabel.Rd |only
maptools-0.8-18/maptools/man/map2SpatialPolygons.Rd | 3
maptools-0.8-18/maptools/man/pal2SpatialPolygons.Rd | 6
maptools-0.8-18/maptools/man/pointLabelBase.Rd |only
maptools-0.8-18/maptools/man/pointLabelLattice.Rd |only
maptools-0.8-18/maptools/man/sp2WB.Rd | 2
maptools-0.8-18/maptools/maptools-Ex.R | 122 +++++++++++++++++--
22 files changed, 253 insertions(+), 42 deletions(-)
Title: Linear Latent Variable Models
Diff between lava versions 1.1-8 dated 2012-10-16 and 1.1-11 dated 2012-11-05
Description: Estimation and simulation of latent variable models
Author: Klaus K. Holst
Maintainer: Klaus K. Holst
DESCRIPTION | 8 ++---
MD5 | 26 ++++++++---------
R/compare.R | 53 ++++++++++++++++++++++++++++-------
R/effects.R | 14 ++++-----
R/estimate.multigroup.R | 10 +++---
R/finalize.R | 33 ++++++++++------------
R/glmest.R | 1
R/gof.R | 2 -
R/modelPar.R | 72 ++++++++++++++++++++++++------------------------
R/multigroup.R | 1
R/pars.R | 6 ++--
R/plot.R | 14 ++++++---
R/sim.R | 11 ++++++-
man/compare.Rd | 23 ++++++++++++++-
14 files changed, 171 insertions(+), 103 deletions(-)
Title: Fast partial SVD by implicitly-restarted Lanczos
bidiagonalization
Diff between irlba versions 1.0.1 dated 2011-11-12 and 1.0.2 dated 2012-11-05
Description: A fast and memory-efficient method for computing a few
approximate singular values and singular vectors of large
matrices.
Author: Jim Baglama and Lothar Reichel
Maintainer: Bryan W. Lewis
DESCRIPTION | 12 +++++++-----
MD5 | 10 +++++-----
NEWS | 1 +
R/irlba.R | 30 +++++++++++++++++-------------
inst/doc/irlba.pdf |binary
man/irlba.Rd | 19 +++++++++----------
6 files changed, 39 insertions(+), 33 deletions(-)