Mon, 05 Nov 2012

Package tiff updated to version 0.1-3 with previous version 0.1-2 dated 2012-08-31

Title: Read and write TIFF images
Description: This package provides an easy and simple way to read, write and display bitmap images stored in the TIFF format. It can read and write both files and in-memory raw vectors.
Author: Simon Urbanek
Maintainer: Simon Urbanek

Diff between tiff versions 0.1-2 dated 2012-08-31 and 0.1-3 dated 2012-11-05

 DESCRIPTION     |    6 ++---
 MD5             |   10 ++++-----
 NEWS            |    9 ++++++++
 R/read.R        |    4 +--
 man/readTIFF.Rd |   19 ++++++++++++++---
 src/read.c      |   60 ++++++++++++++++++++++++++++++++++++++++++--------------
 6 files changed, 80 insertions(+), 28 deletions(-)

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Package spgwr updated to version 0.6-18 with previous version 0.6-17 dated 2012-08-22

Title: Geographically weighted regression
Description: Functions for computing geographically weighted regressions based on work by Chris Brunsdon, Martin Charlton and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Author: Roger Bivand and Danlin Yu, contributions by Tomoki Nakaya, tricube function based on a contribution by Miquel-Angel Garcia-Lopez
Maintainer: Roger Bivand

Diff between spgwr versions 0.6-17 dated 2012-08-22 and 0.6-18 dated 2012-11-05

 ChangeLog       |  309 +++++++++++++++++++++++---------------------------------
 DESCRIPTION     |    8 -
 MD5             |   18 +--
 R/gwr.cv.R      |   46 +++++---
 R/zzz.R         |    4 
 inst/ChangeLog  |  309 +++++++++++++++++++++++---------------------------------
 man/ggwr.sel.Rd |    2 
 man/gw.cov.Rd   |    2 
 man/gwr.Rd      |   52 +++++++++
 man/gwr.cv.Rd   |   27 ++++
 10 files changed, 375 insertions(+), 402 deletions(-)

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Package scagnostics updated to version 0.2-4 with previous version 0.2-3 dated 2009-01-27

Title: Compute scagnostics - scatterplot diagnostics
Description: Calculates graph theoretic scagnostics. Scagnostics describe various measures of interest for pairs of variables, based on their appearance on a scatterplot. They are useful tool for discovering interesting or unusual scatterplots from a scatterplot matrix, without having to look at every individual plot.
Author: Lee Wilkinson and Anushka Anand
Maintainer: Simon Urbanek

Diff between scagnostics versions 0.2-3 dated 2009-01-27 and 0.2-4 dated 2012-11-05

 DESCRIPTION                    |   15 ++++++++++++---
 MD5                            |only
 NEWS                           |only
 inst/java/scagnostics.jar      |binary
 src-java/scagnostics/Main.java |   21 +++++++++------------
 5 files changed, 21 insertions(+), 15 deletions(-)

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New package RSclient with initial version 0.7-0
Package: RSclient
Version: 0.7-0
Title: Client for Rserve
Author: Simon Urbanek
Maintainer: Simon Urbanek
Depends: R (>= 2.7.0)
Description: Client for Rserve, allowing to connect to Rserve instances and issue commands.
License: GPL-2
URL: http://www.rforge.net/Rserve/
Packaged: 2012-11-05 18:39:47 UTC; svnuser
Repository: CRAN
Date/Publication: 2012-11-05 19:48:10

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Package RCassandra updated to version 0.1-1 with previous version 0.1-0 dated 2012-05-09

Title: R/Cassandra interface
Description: This packages provides a direct interface (without the use of Java) to the most basic functionality of Apache Cassanda such as login, updates and queries.
Author: Simon Urbanek
Maintainer: Simon Urbanek

Diff between RCassandra versions 0.1-0 dated 2012-05-09 and 0.1-1 dated 2012-11-05

 DESCRIPTION       |    6 -
 MD5               |   11 +-
 NEWS              |only
 R/cass.R          |    4 -
 man/RC.connect.Rd |   11 ++
 man/RC.get.Rd     |   35 ++++++---
 src/cass.c        |  207 ++++++++++++++++++++++++++++++++++++++++--------------
 7 files changed, 200 insertions(+), 74 deletions(-)

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Package nbpMatching updated to version 1.3.6 with previous version 1.3.2 dated 2011-10-10

Title: functions for non-bipartite optimal matching
Description: solves Mahalanobis distance matrices
Author: Bo Lu, Robert Greevy, Cole Beck
Maintainer: Cole Beck

Diff between nbpMatching versions 1.3.2 dated 2011-10-10 and 1.3.6 dated 2012-11-05

 nbpMatching-1.3.2/nbpMatching/R/nbpMatching-internal.R    |only
 nbpMatching-1.3.6/nbpMatching/DESCRIPTION                 |   12 ++--
 nbpMatching-1.3.6/nbpMatching/MD5                         |   34 +++++++-------
 nbpMatching-1.3.6/nbpMatching/NAMESPACE                   |only
 nbpMatching-1.3.6/nbpMatching/R/assign.grp.R              |   13 ++---
 nbpMatching-1.3.6/nbpMatching/R/fill.missing.R            |   13 ++---
 nbpMatching-1.3.6/nbpMatching/R/gendistance.R             |   13 ++---
 nbpMatching-1.3.6/nbpMatching/R/nonbimatch.R              |   13 ++---
 nbpMatching-1.3.6/nbpMatching/R/qom.R                     |   13 ++---
 nbpMatching-1.3.6/nbpMatching/man/assign.grp.Rd           |    2 
 nbpMatching-1.3.6/nbpMatching/man/distancematrix.Rd       |    2 
 nbpMatching-1.3.6/nbpMatching/man/fill.missing.Rd         |    2 
 nbpMatching-1.3.6/nbpMatching/man/gendistance.Rd          |    2 
 nbpMatching-1.3.6/nbpMatching/man/nbpMatching-internal.Rd |    1 
 nbpMatching-1.3.6/nbpMatching/man/nbpMatching-package.Rd  |    8 ++-
 nbpMatching-1.3.6/nbpMatching/man/nonbimatch.Rd           |    2 
 nbpMatching-1.3.6/nbpMatching/man/qom.Rd                  |    2 
 nbpMatching-1.3.6/nbpMatching/man/quantile.Rd             |    2 
 nbpMatching-1.3.6/nbpMatching/src/fcorematch.f            |   16 +++++-
 19 files changed, 79 insertions(+), 71 deletions(-)

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New package PKI with initial version 0.1-0
Package: PKI
Version: 0.1-0
Title: Public Key Infrastucture for R based on the X.509 standard
Author: Simon Urbanek
Maintainer: Simon Urbanek
Depends: R (>= 2.9.0), base64enc
Description: This package provides PKI functions such as verifyig certificates, RSA encription and signing which can be used to build PKI infrastructure and perform cryptographic tasks.
License: GPL-2 | GPL-3
URL: http://www.rforge.net/PKI
SystemRequirements: OpenSSL library
Packaged: 2012-11-05 16:10:20 UTC; svnuser
Repository: CRAN
Date/Publication: 2012-11-05 19:48:12

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Package metrumrg updated to version 5.25 with previous version 5.24 dated 2012-10-25

Title: Pharmacometric tools for data preparation, modeling, simulation, and reporting
Description: Pharmacometric tools for common data preparation tasks, stratified bootstrap resampling of data sets, NONMEM control stream creation/editing, NONMEM model execution, creation of standard and user-defined diagnostic plots, execution and summary of bootstrap and predictive check results, implementation of simulations from posterior parameter distributions, reporting of output tables and creation of detailed analysis logs.
Author: Tim Bergsma, Bill Knebel, Leonid Gibiansky, Natalie Hsiang
Maintainer: Tim Bergsma

Diff between metrumrg versions 5.24 dated 2012-10-25 and 5.25 dated 2012-11-05

 DESCRIPTION                              |    8 ++---
 MD5                                      |   21 +++++++-------
 R/superset.R                             |    1 
 inst/example/project/script/script.Rproj |only
 man/NONR.Rd                              |   22 +++++++--------
 man/PLOTR.Rd                             |    2 -
 man/compute.cwres.Rd                     |   44 +++++++++++++++----------------
 man/dataSynthesis.Rd                     |    4 +-
 man/fixProblem.Rd                        |    2 -
 man/helpAdminister.Rd                    |    2 -
 man/metrumrg-package.Rd                  |    4 +-
 man/svnIsText.Rd                         |    2 -
 12 files changed, 56 insertions(+), 56 deletions(-)

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Package Cairo updated to version 1.5-2 with previous version 1.5-1 dated 2011-12-11

Title: R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output.
Description: This package provides a Cairo graphics device that can be use to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environemnts (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.
Author: Simon Urbanek , Jeffrey Horner
Maintainer: Simon Urbanek

Diff between Cairo versions 1.5-1 dated 2011-12-11 and 1.5-2 dated 2012-11-05

 DESCRIPTION          |   25 +++++++++++++---
 MD5                  |   23 ++++++++-------
 NEWS                 |   11 +++++++
 R/Cairo.R            |    6 +++
 man/Cairo.capture.Rd |only
 man/Cairo.onSave.Rd  |only
 man/Cairo.serial.Rd  |only
 src/backend.h        |   78 ++++++++++++++++++++++++++-------------------------
 src/cairogd.c        |   46 ++++++++++++++++++++++++++++++
 src/cairogd.h        |    2 -
 src/cairotalk.c      |   45 ++++++++++++++++++++++++++++-
 src/pdf-backend.c    |    2 -
 src/ps-backend.c     |    2 -
 src/svg-backend.c    |    2 -
 14 files changed, 185 insertions(+), 57 deletions(-)

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New package binseqtest with initial version 0.3
Package: binseqtest
Type: Package
Title: Exact Binary Sequential Designs and Analysis
Version: 0.3
Date: 2012-11-05
Author: Jenn Kirk, Mike Fay
Maintainer: Michael Fay
Description: For a series of binary responses, create stopping boundary with exact results after stopping, allowing updating for missing assessments.
License: GPL-2
Depends: methods, graphics, stats, clinfun
Collate: 'allFuncs.R'
Packaged: 2012-11-05 18:19:52 UTC; faym
Repository: CRAN
Date/Publication: 2012-11-05 19:57:21

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Package base64enc updated to version 0.1-1 with previous version 0.1-0 dated 2012-09-08

Title: Tools for base64 encoding
Description: This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package.
Author: Simon Urbanek
Maintainer: Simon Urbanek

Diff between base64enc versions 0.1-0 dated 2012-09-08 and 0.1-1 dated 2012-11-05

 DESCRIPTION   |    8 ++++----
 MD5           |    7 ++++---
 NEWS          |only
 R/base64.R    |   11 ++++++++---
 man/base64.Rd |   14 +++++++++-----
 5 files changed, 25 insertions(+), 15 deletions(-)

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Package XLConnect updated to version 0.2-3 with previous version 0.2-2 dated 2012-10-15

Title: Excel Connector for R
Description: Manipulate Excel files from R
Author: Mirai Solutions GmbH
Maintainer: Martin Studer

Diff between XLConnect versions 0.2-2 dated 2012-10-15 and 0.2-3 dated 2012-11-05

 XLConnect-0.2-2/XLConnect/inst/java/XLConnect-0.2-1-sources.jar            |only
 XLConnect-0.2-2/XLConnect/inst/java/XLConnect-0.2-1.jar                    |only
 XLConnect-0.2-3/XLConnect/DESCRIPTION                                      |    8 +-
 XLConnect-0.2-3/XLConnect/MD5                                              |   36 +++++-----
 XLConnect-0.2-3/XLConnect/NEWS                                             |    7 +
 XLConnect-0.2-3/XLConnect/R/extractRownames.R                              |   31 +++++---
 XLConnect-0.2-3/XLConnect/R/includeRownames.R                              |   29 +++++---
 XLConnect-0.2-3/XLConnect/R/workbook.readNamedRegion.R                     |    8 +-
 XLConnect-0.2-3/XLConnect/R/workbook.readWorksheet.R                       |    8 +-
 XLConnect-0.2-3/XLConnect/R/writeNamedRegionToFile.R                       |    4 -
 XLConnect-0.2-3/XLConnect/inst/XLConnect.R                                 |    2 
 XLConnect-0.2-3/XLConnect/inst/doc/XLConnect.Rnw                           |    5 -
 XLConnect-0.2-3/XLConnect/inst/doc/XLConnect.pdf                           |binary
 XLConnect-0.2-3/XLConnect/inst/java/XLConnect-0.2-3-sources.jar            |only
 XLConnect-0.2-3/XLConnect/inst/java/XLConnect-0.2-3.jar                    |only
 XLConnect-0.2-3/XLConnect/inst/unitTests/runit.workbook.writeNamedRegion.R |   15 ++++
 XLConnect-0.2-3/XLConnect/man/XLConnect-package.Rd                         |    4 -
 XLConnect-0.2-3/XLConnect/man/clearNamedRegion-methods.Rd                  |    7 +
 XLConnect-0.2-3/XLConnect/man/clearRange-methods.Rd                        |    5 -
 XLConnect-0.2-3/XLConnect/man/clearRangeFromReference-methods.Rd           |    5 -
 XLConnect-0.2-3/XLConnect/man/clearSheet-methods.Rd                        |    6 -
 21 files changed, 110 insertions(+), 70 deletions(-)

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Package spgrass6 updated to version 0.7-12 with previous version 0.7-10 dated 2012-03-19

Title: Interface between GRASS 6+ geographical information system and R
Description: Interpreted interface between GRASS 6+ geographical information system and R, based on starting R from within the GRASS environment, or running free-standing R in a temporary GRASS location; the package provides facilities for using all GRASS commands from the R command line.
Author: Roger Bivand
Maintainer: Roger Bivand

Diff between spgrass6 versions 0.7-10 dated 2012-03-19 and 0.7-12 dated 2012-11-05

 ChangeLog                       |  527 +++++++++++++++-------------------------
 DESCRIPTION                     |    8 
 MD5                             |   14 -
 R/vect_link.R                   |    9 
 inst/ChangeLog                  |  527 +++++++++++++++-------------------------
 inst/doc/OSGeo_vol1_GRASS-R.pdf |binary
 inst/doc/spgrass6_0.3.pdf       |binary
 man/readVECT6.Rd                |    2 
 8 files changed, 430 insertions(+), 657 deletions(-)

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Package rgeos updated to version 0.2-8 with previous version 0.2-7 dated 2012-06-29

Title: Interface to Geometry Engine - Open Source (GEOS)
Description: Interface to Geometry Engine - Open Source (GEOS) using the C API for topology operations on geometries. The GEOS library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on CRAN.
Author: Roger Bivand [cre, aut], Colin Rundel [aut], Edzer Pebesma [ctb], Karl Ove Hufthammer [ctb]
Maintainer: Roger Bivand

Diff between rgeos versions 0.2-7 dated 2012-06-29 and 0.2-8 dated 2012-11-05

 ChangeLog                |   45 +++++++++++++++++++++++++++++++++++++++++++++
 DESCRIPTION              |   23 ++++++++++++++---------
 MD5                      |   30 +++++++++++++++++-------------
 NAMESPACE                |    3 +--
 R/labelpt.R              |only
 R/rgeos_wkt.R            |   13 +++++++++----
 inst/ChangeLog           |   45 +++++++++++++++++++++++++++++++++++++++++++++
 inst/SVN_VERSION         |    2 +-
 inst/wkts                |only
 man/comment-functions.Rd |    3 +++
 man/labelpt.Rd           |only
 man/utility-functions.Rd |   16 +++++++++++++++-
 src/rgeos.c              |    1 +
 src/rgeos.h              |    2 +-
 src/rgeos_R2geosMP.c     |    1 +
 src/rgeos_coord.c        |    2 +-
 src/rgeos_poly2nb.c      |    2 +-
 17 files changed, 155 insertions(+), 33 deletions(-)

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Package rgdal updated to version 0.7-22 with previous version 0.7-20 dated 2012-10-20

Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.6.0) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and Expat) are provided on CRAN.
Author: Timothy H. Keitt , Roger Bivand , Edzer Pebesma , Barry Rowlingson
Maintainer: Roger Bivand

Diff between rgdal versions 0.7-20 dated 2012-10-20 and 0.7-22 dated 2012-11-05

 ChangeLog                   | 1206 ++++++++++++++++++++++++++++++++++++++++++++
 DESCRIPTION                 |    9 
 MD5                         |   28 -
 NAMESPACE                   |    5 
 R/AAA.R                     |    1 
 R/Class-CRSx.R              |    3 
 R/gdal.R                    |   32 +
 R/sgdf_gdal.R               |    3 
 R/sp_gdal.R                 |   23 
 R/subs.R                    |    3 
 inst/ChangeLog              | 1206 ++++++++++++++++++++++++++++++++++++++++++++
 man/CRS-class.Rd            |    9 
 man/GDALRasterBand-class.Rd |   11 
 man/projInfo.Rd             |    2 
 man/readGDAL.Rd             |    9 
 15 files changed, 2510 insertions(+), 40 deletions(-)

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Package classInt updated to version 0.1-19 with previous version 0.1-18 dated 2012-07-19

Title: Choose univariate class intervals
Description: A package for choosing univariate class intervals for mapping or other graphics purposes
Author: Roger Bivand [aut, cre], Hisaji Ono [ctb], Richard Dunlap [ctb], Matthieu Stigler [ctb]
Maintainer: Roger Bivand

Diff between classInt versions 0.1-18 dated 2012-07-19 and 0.1-19 dated 2012-11-05

 ChangeLog      |   12 ++++++++++++
 DESCRIPTION    |   18 +++++++++++-------
 MD5            |    6 +++---
 inst/ChangeLog |   12 ++++++++++++
 4 files changed, 38 insertions(+), 10 deletions(-)

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Package CHsharp updated to version 0.3 with previous version 0.2 dated 2008-07-30

Title: Choi and Hall Clustering in 3d
Description: Functions that cluster 1-3 dimensional data into their local modes. Based on a convergent form of Choi and Hall's (1999) data sharpening method. Note: sharp3dB is much faster than sharp3d if data is ordered in at least one dimension.
Author: Douglas G. Woolford
Maintainer: W. John Braun

Diff between CHsharp versions 0.2 dated 2008-07-30 and 0.3 dated 2012-11-05

 CHsharp-0.2/CHsharp/INDEX           |only
 CHsharp-0.2/CHsharp/data/d.R        |only
 CHsharp-0.2/CHsharp/src/sharp3d.f   |only
 CHsharp-0.3/CHsharp/DESCRIPTION     |   18 +++++++++++-------
 CHsharp-0.3/CHsharp/MD5             |only
 CHsharp-0.3/CHsharp/NAMESPACE       |only
 CHsharp-0.3/CHsharp/R/sharp3d.R     |   29 ++++++++++++++++++++++++++---
 CHsharp-0.3/CHsharp/data/d.rda      |only
 CHsharp-0.3/CHsharp/man/sharp1d.Rd  |only
 CHsharp-0.3/CHsharp/man/sharp2d.Rd  |only
 CHsharp-0.3/CHsharp/man/sharp3d.Rd  |   21 ++++++++++-----------
 CHsharp-0.3/CHsharp/man/sharp3dB.Rd |    2 --
 CHsharp-0.3/CHsharp/src/sharpen.f   |only
 13 files changed, 47 insertions(+), 23 deletions(-)

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Package maptree (with last version 1.4-6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-01-29 1.4-6
2009-01-27 1.4-5
2007-10-27 1.4-4
2006-11-16 1.4-3

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Package mimR (with last version 2.6.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-08-23 2.6.2

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Package digitize (with last version 0.0.1-07) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-03-08 0.0.1-07

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Package gRc (with last version 0.4-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-20 0.4-0
2011-01-20 0.3.0
2008-07-14 0.2.2
2008-05-07 0.2.1
2008-04-25 0.2.0
2008-03-12 0.1.4
2008-02-04 0.1.2
2007-12-30 0.1.1
2007-12-24 0.1.0

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Package ffmanova (with last version 0.1-1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-05-07 0.1-1.2
2009-02-23 0.1-1.1
2007-04-20 0.1-1

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Package spacetime updated to version 1.0-0 with previous version 0.8-0 dated 2012-09-25

Title: classes and methods for spatio-temporal data
Description: A package with classes and methods for spatio-temporal data. In particular, space-time regular lattices, sparse lattices, irregular data, and simple trajectories are supported. Utility functions are provided for plotting data as map sequences (lattice or animation) or multiple time series; for spatial and temporal selection, as well as methods for retrieving coordinates, for subsetting, print, summary, etc.
Author: Edzer Pebesma [cre, aut], Benedikt Graeler [ctb], Tom Gottfried [ctb], Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma

Diff between spacetime versions 0.8-0 dated 2012-09-25 and 1.0-0 dated 2012-11-05

 spacetime-0.8-0/spacetime/R/Class-STLDF.R       |only
 spacetime-0.8-0/spacetime/R/STLDF-methods.R     |only
 spacetime-1.0-0/spacetime/ChangeLog             |only
 spacetime-1.0-0/spacetime/DESCRIPTION           |   28 +--
 spacetime-1.0-0/spacetime/MD5                   |   89 ++++++------
 spacetime-1.0-0/spacetime/NAMESPACE             |    2 
 spacetime-1.0-0/spacetime/R/ST-methods.R        |   23 ++-
 spacetime-1.0-0/spacetime/R/STFDF-methods.R     |    2 
 spacetime-1.0-0/spacetime/R/STIDF-methods.R     |    6 
 spacetime-1.0-0/spacetime/R/STSDF-methods.R     |    5 
 spacetime-1.0-0/spacetime/R/aggregate.R         |   47 +++---
 spacetime-1.0-0/spacetime/R/coerce.R            |   32 ++++
 spacetime-1.0-0/spacetime/R/eof.R               |    8 -
 spacetime-1.0-0/spacetime/R/plot.R              |   20 --
 spacetime-1.0-0/spacetime/R/raster.R            |    5 
 spacetime-1.0-0/spacetime/R/stconstruct.R       |    8 -
 spacetime-1.0-0/spacetime/R/stplot.R            |   29 ++--
 spacetime-1.0-0/spacetime/R/timematch.R         |   22 ++-
 spacetime-1.0-0/spacetime/data/air.rda          |binary
 spacetime-1.0-0/spacetime/data/fires.rda        |binary
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 spacetime-1.0-0/spacetime/inst/doc/jss816.Rnw   |   88 +-----------
 spacetime-1.0-0/spacetime/inst/doc/jss816.bib   |   11 +
 spacetime-1.0-0/spacetime/inst/doc/jss816.pdf   |binary
 spacetime-1.0-0/spacetime/inst/doc/sto.Rnw      |   46 +++---
 spacetime-1.0-0/spacetime/inst/doc/sto.pdf      |binary
 spacetime-1.0-0/spacetime/inst/doc/stpg.pdf     |binary
 spacetime-1.0-0/spacetime/man/ST-class.Rd       |    2 
 spacetime-1.0-0/spacetime/man/STFDF-class.Rd    |    1 
 spacetime-1.0-0/spacetime/man/STIDF-class.Rd    |    1 
 spacetime-1.0-0/spacetime/man/STLDF-class.Rd    |    1 
 spacetime-1.0-0/spacetime/man/STSDF-class.Rd    |    1 
 spacetime-1.0-0/spacetime/man/STTDF-class.Rd    |    1 
 spacetime-1.0-0/spacetime/man/delta.Rd          |    1 
 spacetime-1.0-0/spacetime/man/eof.Rd            |    2 
 spacetime-1.0-0/spacetime/man/over.Rd           |    1 
 spacetime-1.0-0/spacetime/man/stconstruct.Rd    |    1 
 spacetime-1.0-0/spacetime/man/stplot.Rd         |    6 
 spacetime-1.0-0/spacetime/man/timematch.Rd      |    1 
 spacetime-1.0-0/spacetime/tests/basic.R         |   19 +-
 spacetime-1.0-0/spacetime/tests/basic.Rout.save |  169 ++++++++++++------------
 spacetime-1.0-0/spacetime/tests/over.R          |    9 -
 spacetime-1.0-0/spacetime/tests/over.Rout.save  |   29 +---
 spacetime-1.0-0/spacetime/tests/traj.R          |   45 ------
 spacetime-1.0-0/spacetime/tests/traj.Rout.save  |   93 -------------
 49 files changed, 381 insertions(+), 475 deletions(-)

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Package ICE updated to version 0.68 with previous version 0.66 dated 2012-03-20

Title: Iterated Conditional Expectation
Description: Kernel Estimators for Interval-Censored Data
Author: W. John Braun
Maintainer:

Diff between ICE versions 0.66 dated 2012-03-20 and 0.68 dated 2012-11-05

 DESCRIPTION            |    8 ++++----
 MD5                    |   16 ++++++++--------
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Package Epi updated to version 1.1.40 with previous version 1.1.36 dated 2012-06-29

Title: A package for statistical analysis in epidemiology.
Description: Functions for demographic and epidemiological analysis in the Lexis diagram, i.e. register and cohort follow-up data, including interval censored data and representation of multistate data. Also some useful functions for tabulation and plotting. Contains some epidemiological datasets.
Author: Bendix Carstensen [aut, cre], Martyn Plummer [aut], Michael Hills [aut], Esa Laara [ctb]
Maintainer: Bendix Carstensen

Diff between Epi versions 1.1.36 dated 2012-06-29 and 1.1.40 dated 2012-11-05

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New package attfad with initial version 1.0
Package: attfad
Type: Package
Title: Evaluation and comparison of expression data and GRNs
Version: 1.0
Date: 2012-09-12
Author: Robert Maier
Maintainer: Robert Maier
Description: This packagage facilitates evaluation of expression data sets compendia. They can either be based on real data or be the result of a simulation. Some statics make use of a gene regulatory network, on which the expression data is based, and some require the presence of replicates of microarray experiments.
Depends: MethComp
License: GPL-2
Packaged: 2012-11-05 12:20:27 UTC; maierr
Repository: CRAN
Date/Publication: 2012-11-05 15:05:47

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Package SPOT updated to version 1.0.2662 with previous version 1.0.2661 dated 2012-06-24

Title: Sequential Parameter Optimization
Description: R-Package for Sequential Parameter Optimization Toolbox
Author: T. Bartz-Beielstein with contributions from: J. Ziegenhirt, W. Konen, O. Flasch, M. Friese, P. Koch, M. Zaefferer, B. Naujoks
Maintainer: Martin Zaefferer

Diff between SPOT versions 1.0.2661 dated 2012-06-24 and 1.0.2662 dated 2012-11-05

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Package secr updated to version 2.4.0 with previous version 2.3.2 dated 2012-05-15

Title: Spatially explicit capture-recapture
Description: Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford

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Package nsRFA updated to version 0.7-7 with previous version 0.7-4 dated 2012-07-22

Title: Non-supervised Regional Frequency Analysis
Description: A collection of statistical tools for objective (non-supervised) applications of the Regional Frequency Analysis methods in hydrology. The package refers to the index-value method and, more precisely, helps the hydrologist to: (1) regionalize the index-value; (2) form homogeneous regions with similar growth curves; (3) fit distribution functions to the empirical regional growth curves.
Author: Alberto Viglione
Maintainer: Alberto Viglione

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Package LaplacesDemon updated to version 12.11.05 with previous version 12.10.01 dated 2012-10-01

Title: Complete Environment for Bayesian Inference
Description: Laplace's Demon is a complete environment for Bayesian inference.
Author: Statisticat, LLC
Maintainer: Statisticat, LLC

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Package homtest updated to version 1.0-5 with previous version 1.0-4 dated 2009-03-26

Title: Homogeneity tests for Regional Frequency Analysis
Description: A collection of homogeneity tests described in: Viglione A., Laio F., Claps P. (2007) ``A comparison of homogeneity tests for regional frequency analysis'', Water Resources Research, 43, W03428, doi:10.1029/2006WR005095. More on Regional Frequency Analysis can be found in package nsRFA.
Author: Alberto Viglione
Maintainer: Alberto Viglione

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Package GeoXp updated to version 1.6.1 with previous version 1.6.0 dated 2012-09-04

Title: Interactive exploratory spatial data analysis
Description: GeoXp is a tool for researchers in spatial statistics, spatial econometrics, geography, ecology etc allowing to link dynamically statistical plots with elementary maps. This coupling consists in the fact that the selection of a zone on the map results in the automatic highlighting of the corresponding points on the statistical graph or reversely the selection of a portion of the graph results in the automatic highlighting of the corresponding points on the map. GeoXp includes tools from different areas of spatial statistics including geostatistics as well as spatial econometrics and point processes. Besides elementary plots like boxplots, histograms or simple scatterplot, GeoXp also couples with maps Moran scatterplots, variogram cloud, Lorentz Curves,...In order to make the most of the multidimensionality of the data, GeoXp includes some dimension reduction techniques such as PCA.
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne Ruiz-Gazen, Christine Thomas-Agnan
Maintainer: Thibault Laurent

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Package RInside updated to version 0.2.9 with previous version 0.2.8 dated 2012-09-08

Title: C++ classes to embed R in C++ applications
Description: C++ classes to embed R in C++ applications The RInside packages makes it easier to have 'R inside' your C++ application by providing a C++ wrapper class providing the R interpreter. As R itself is embedded into your application, a shared library build of R is required. This works on Linux, OS X and even on Windows provided you use the same tools used to build R itself. Numerous examples are provided in the six subdirectories of the examples/ directory of the installed package: standard, mpi (for parallel computing) qt (showing how to embed RInside inside a Qt GUI application), wt (showing how to build a 'web-application' using the Wt toolkit), armadillo (for RInside use with RcppArmadillo) and eigen (for RInside use with RcppEigen). Doxygen-generated documentation of the C++ classes is available at the RInside website as well.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel

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Package maptools updated to version 0.8-18 with previous version 0.8-16 dated 2012-06-29

Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data, in particular ESRI shapefiles; C code used from shapelib. It includes binary access to GSHHS shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as PBSmapping, spatstat, maps, RArcInfo, Stata tmap, WinBUGS, Mondrian, and others.
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko, Jonathan Callahan, German Carrillo, Stéphane Dray, David Forrest, Michael Friendly, Patrick Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Karl Ove Hufthammer, Thomas Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai, Oscar Perpinan Lamigueiro, Tom Short, Greg Snow, Ben Stabler and Rolf Turner
Maintainer: Roger Bivand

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New package transmission with initial version 0.1
Package: transmission
Type: Package
Title: Continuous time infectious disease models on individual data.
Version: 0.1
Date: 2012-11-04
Author: Alun Thomas, Andrew Redd
Authors@R: c(person('Alun', 'Thomas', email='alun.thomas@utah.edu', role=c('aut', 'cph')) , person('Andrew', 'Redd', email='andrew.redd@hsc.utah.edu', role=c('aut', 'com', 'cre')))
Maintainer: Andrew Redd
Description: Simulate and fit continuous time infectious disease transmission models. Infections can only occur through person to person contact or imported from outside the unit.
License: GPL (>= 3.0)
LazyLoad: yes
Suggests: testthat(>= 0.5)
Depends: R (>= 2.15.0), methods, Rcpp (>= 0.9.15)
Imports: ggplot2, reshape2, plyr
LinkingTo: Rcpp
RcppModules: continuous, sim
Collate: 'zzz.R' 'alunll.R' 'convert.R' 'metrics.R' 'ml.R' 'time.R' 'utils.R' 'wrap.R' 'wrap_sim.R'
Packaged: 2012-11-05 03:24:29 UTC; aredd
Repository: CRAN
Date/Publication: 2012-11-05 08:01:23

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Package lava updated to version 1.1-11 with previous version 1.1-8 dated 2012-10-16

Title: Linear Latent Variable Models
Description: Estimation and simulation of latent variable models
Author: Klaus K. Holst
Maintainer: Klaus K. Holst

Diff between lava versions 1.1-8 dated 2012-10-16 and 1.1-11 dated 2012-11-05

 DESCRIPTION             |    8 ++---
 MD5                     |   26 ++++++++---------
 R/compare.R             |   53 ++++++++++++++++++++++++++++-------
 R/effects.R             |   14 ++++-----
 R/estimate.multigroup.R |   10 +++---
 R/finalize.R            |   33 ++++++++++------------
 R/glmest.R              |    1 
 R/gof.R                 |    2 -
 R/modelPar.R            |   72 ++++++++++++++++++++++++------------------------
 R/multigroup.R          |    1 
 R/pars.R                |    6 ++--
 R/plot.R                |   14 ++++++---
 R/sim.R                 |   11 ++++++-
 man/compare.Rd          |   23 ++++++++++++++-
 14 files changed, 171 insertions(+), 103 deletions(-)

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Package irlba updated to version 1.0.2 with previous version 1.0.1 dated 2011-11-12

Title: Fast partial SVD by implicitly-restarted Lanczos bidiagonalization
Description: A fast and memory-efficient method for computing a few approximate singular values and singular vectors of large matrices.
Author: Jim Baglama and Lothar Reichel
Maintainer: Bryan W. Lewis

Diff between irlba versions 1.0.1 dated 2011-11-12 and 1.0.2 dated 2012-11-05

 DESCRIPTION        |   12 +++++++-----
 MD5                |   10 +++++-----
 NEWS               |    1 +
 R/irlba.R          |   30 +++++++++++++++++-------------
 inst/doc/irlba.pdf |binary
 man/irlba.Rd       |   19 +++++++++----------
 6 files changed, 39 insertions(+), 33 deletions(-)

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