Title: Univariate and Multivariate Spatial Modeling
Diff between spBayes versions 0.2-9 dated 2012-12-12 and 0.3-0 dated 2012-12-17
Description: spBayes fits univariate and multivariate spatial models
with Markov chain Monte Carlo (MCMC).
Author: Andrew O. Finley
Maintainer: Andrew O. Finley
DESCRIPTION | 6 +++---
MD5 | 21 +++++++++++++--------
NAMESPACE | 1 +
R/pointsInPoly.R |only
inst |only
man/pointsInPoly.Rd |only
src/ptsInPoly.cpp |only
src/spGLM_AMCMC.cpp | 14 +++++++-------
src/spLM.cpp | 8 ++++----
src/spMvGLM_AMCMC.cpp | 14 +++++++-------
src/spMvLM.cpp | 10 +++++-----
src/spPPGLM_AMCMC.cpp | 14 +++++++-------
src/spPPMvGLM_AMCMC.cpp | 14 +++++++-------
13 files changed, 54 insertions(+), 48 deletions(-)
Title: Functions facilitating the estimation of the Intraclass
Correlation Coefficient
Diff between ICC versions 2.1 dated 2011-06-15 and 2.2 dated 2012-12-17
Description: The package includes a number of functions to assist in
the estimation of the Intraclass Correlation Coefficient (ICC).
Functions included estimate the ICC from variance components of
a one-way ANOVA and also estimate the number of individuals or
groups necessary to obtain an ICC estimate with a desired
confidence interval width.
Author: Matthew Wolak
Maintainer: Matthew Wolak
DESCRIPTION | 12 +++++-------
MD5 |only
NAMESPACE |only
R/ICCest.r | 19 ++++++++++++++++++-
inst/CITATION | 6 +++---
man/ICC-package.Rd | 4 ++--
man/ICCbare.Rd | 2 +-
man/ICCbareF.Rd | 2 +-
8 files changed, 30 insertions(+), 15 deletions(-)
Title: Density Estimation for Binned/Weighted Data
Diff between bda versions 2.0.11-11 dated 2012-11-12 and 2.0.12-17 dated 2012-12-17
Description: This package collects algorithms/functions developed for
density estimation based on weighted or pre-binned data.
Author: Bin Wang
Maintainer: Bin Wang
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
PORTING | 12 +++++++++++-
R/wkde.R | 55 ++++++++++++++++++++++++++++---------------------------
R/zzz.R | 5 -----
src/KernelWKDE.c | 2 +-
6 files changed, 49 insertions(+), 43 deletions(-)
Title: Visualization for seismic tomography
Diff between RTOMO versions 1.0-9 dated 2012-07-30 and 1.1-0 dated 2012-12-17
Description: Created mainly for use with seismic tomography, this
program plots tomographic images, and allows one to interact
and query three-dimensional tomographic models. Vertical
cross-sectional cuts can be extracted by mouse click.
Geographic information can be added easily.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/HOZscale.R | 2 +-
3 files changed, 6 insertions(+), 6 deletions(-)
Title: Graphical User Interface (GUI) for interactive R analysis
sessions
Diff between RPMG versions 2.1-2 dated 2012-07-02 and 2.1-4 dated 2012-12-17
Description: Poor Man's Gui: create interactive R analysis sessions
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
R/HOZscale.R | 5 ++++-
R/SHOWPAL.R | 2 +-
R/see.pal.R | 2 +-
5 files changed, 13 insertions(+), 10 deletions(-)
Title: Seamless Interface to Octave -- and Matlab
Diff between RcppOctave versions 0.8.5 dated 2012-07-03 and 0.8.12 dated 2012-12-17
Description: Direct interface to Octave. The primary goal is to
facilitate the port of Matlab/Octave scripts to R. The package
enables to call any Octave functions from R and as well as
browsing their documentation, passing variables between R and
Octave, using R core RNGs in Octave, which ensure stochastic
computations are also reproducible.
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux
RcppOctave-0.8.12/RcppOctave/DESCRIPTION | 21 --
RcppOctave-0.8.12/RcppOctave/MD5 | 62 +++---
RcppOctave-0.8.12/RcppOctave/NAMESPACE | 5
RcppOctave-0.8.12/RcppOctave/R/OctaveFunction-class.R | 93 +++++++++-
RcppOctave-0.8.12/RcppOctave/R/base-functions.R | 50 +++++
RcppOctave-0.8.12/RcppOctave/R/eval.R | 5
RcppOctave-0.8.12/RcppOctave/R/package.R | 7
RcppOctave-0.8.12/RcppOctave/R/random.R | 12 -
RcppOctave-0.8.12/RcppOctave/R/utils.R | 2
RcppOctave-0.8.12/RcppOctave/build/RcppOctave.pdf |binary
RcppOctave-0.8.12/RcppOctave/demo |only
RcppOctave-0.8.12/RcppOctave/inst/REFERENCES.bib | 70 ++++++-
RcppOctave-0.8.12/RcppOctave/inst/doc/RcppOctave-unitTests.Rnw | 40 ++--
RcppOctave-0.8.12/RcppOctave/inst/doc/RcppOctave-unitTests.pdf |binary
RcppOctave-0.8.12/RcppOctave/inst/doc/RcppOctave.pdf |binary
RcppOctave-0.8.12/RcppOctave/inst/unitTests/_runit.module.R |only
RcppOctave-0.8.12/RcppOctave/man/OctaveFunction-class.Rd | 20 +-
RcppOctave-0.8.12/RcppOctave/man/RcppOctave-package.Rd | 7
RcppOctave-0.8.12/RcppOctave/man/mfiles.Rd |only
RcppOctave-0.8.12/RcppOctave/man/o_addpath.Rd | 9
RcppOctave-0.8.12/RcppOctave/man/o_help.Rd | 16 +
RcppOctave-0.8.12/RcppOctave/man/o_rexp.Rd | 6
RcppOctave-0.8.12/RcppOctave/man/o_rgamma.Rd | 6
RcppOctave-0.8.12/RcppOctave/man/o_rnorm.Rd | 6
RcppOctave-0.8.12/RcppOctave/man/o_runif.Rd | 19 +-
RcppOctave-0.8.12/RcppOctave/man/o_source.Rd | 3
RcppOctave-0.8.12/RcppOctave/src/Makevars.in | 6
RcppOctave-0.8.12/RcppOctave/src/conversion.cpp | 8
RcppOctave-0.8.12/RcppOctave/vignettes/Makefile | 5
RcppOctave-0.8.12/RcppOctave/vignettes/RcppOctave-unitTests.Rnw | 40 ++--
RcppOctave-0.8.12/RcppOctave/vignettes/src/RcppOctave.Rnw | 1
RcppOctave-0.8.5/RcppOctave/R/devutils.R |only
RcppOctave-0.8.5/RcppOctave/vignettes/cleveref.sty |only
RcppOctave-0.8.5/RcppOctave/vignettes/unitTests |only
RcppOctave-0.8.5/RcppOctave/vignettes/vignette_3f9878c20527.mk |only
35 files changed, 388 insertions(+), 131 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.3.6.0 dated 2012-12-07 and 0.3.6.1 dated 2012-12-17
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 3.6.1). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licensed under the GNU GPL version 2 or later, as is the rest
of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
ChangeLog | 12 +
DESCRIPTION | 10 -
MD5 | 46 ++--
inst/NEWS.Rd | 20 --
inst/include/RcppArmadillo.h | 6
inst/include/armadillo_bits/Mat_meat.hpp | 104 ++++++-----
inst/include/armadillo_bits/Op_bones.hpp | 2
inst/include/armadillo_bits/Proxy.hpp | 127 +++++++++++++
inst/include/armadillo_bits/SpMat_meat.hpp | 66 ++-----
inst/include/armadillo_bits/arma_version.hpp | 2
inst/include/armadillo_bits/compiler_setup.hpp | 9
inst/include/armadillo_bits/debug.hpp | 12 +
inst/include/armadillo_bits/fn_dot.hpp | 163 +++++++++++------
inst/include/armadillo_bits/fn_trace.hpp | 161 +++++++++++++----
inst/include/armadillo_bits/forward_bones.hpp | 1
inst/include/armadillo_bits/op_diagvec_bones.hpp | 10 -
inst/include/armadillo_bits/op_diagvec_meat.hpp | 111 +++++++++++
inst/include/armadillo_bits/operator_div.hpp | 195 ++++++---------------
inst/include/armadillo_bits/operator_minus.hpp | 43 ++--
inst/include/armadillo_bits/operator_plus.hpp | 54 ++---
inst/include/armadillo_bits/operator_schur.hpp | 163 +++++++----------
inst/include/armadillo_bits/operator_times.hpp | 67 ++-----
inst/include/armadillo_bits/running_stat_meat.hpp | 6
inst/include/armadillo_bits/subview_each_bones.hpp | 2
24 files changed, 839 insertions(+), 553 deletions(-)
Title: Quantile Regression
Diff between quantreg versions 4.91 dated 2012-09-22 and 4.94 dated 2012-12-17
Description: Quantile regression and related methods.
Author: Roger Koenker
Maintainer: Roger Koenker
DESCRIPTION | 6 +++---
MD5 | 15 ++++++++-------
R/crq.R | 29 +++++++++++++++++++----------
demo/00Index | 1 +
demo/crquis.R |only
inst/ChangeLog | 15 +++++++++++++++
inst/doc/engelcoef.pdf |binary
inst/doc/rq.pdf |binary
man/crq.Rd | 29 +++++++++++++----------------
9 files changed, 59 insertions(+), 36 deletions(-)
Title: Truncated Multivariate Normal and Student t Distribution
Diff between tmvtnorm versions 1.4-6 dated 2012-04-09 and 1.4-7 dated 2012-12-17
Description: Random number generation for the truncated multivariate
normal and Student t distribution. Computes probabilities,
quantiles and densities, including one-dimensional and
bivariate marginal densities. Computes first and second moments
(i.e. mean and covariance matrix) for the double-truncated
multinormal case.
Author: Stefan Wilhelm
Maintainer: Stefan Wilhelm
tmvtnorm-1.4-6/tmvtnorm/Rplots.pdf |only
tmvtnorm-1.4-7/tmvtnorm/DESCRIPTION | 8
tmvtnorm-1.4-7/tmvtnorm/MD5 | 39 +--
tmvtnorm-1.4-7/tmvtnorm/NAMESPACE | 1
tmvtnorm-1.4-7/tmvtnorm/NEWS | 13 +
tmvtnorm-1.4-7/tmvtnorm/R/bivariate-marginal-density.R | 111 +++++++---
tmvtnorm-1.4-7/tmvtnorm/R/checkTmvArgs.R | 6
tmvtnorm-1.4-7/tmvtnorm/R/dtmvnorm-marginal.R | 79 ++++---
tmvtnorm-1.4-7/tmvtnorm/R/dtmvnorm.R | 12 -
tmvtnorm-1.4-7/tmvtnorm/R/dtmvt.R | 4
tmvtnorm-1.4-7/tmvtnorm/R/mtmvnorm.R | 38 +--
tmvtnorm-1.4-7/tmvtnorm/R/rtmvnorm.R | 68 ++++--
tmvtnorm-1.4-7/tmvtnorm/R/rtmvnorm2.R |only
tmvtnorm-1.4-7/tmvtnorm/inst/doc/GibbsSampler.pdf |binary
tmvtnorm-1.4-7/tmvtnorm/man/dtmvnorm.marginal2.Rd | 3
tmvtnorm-1.4-7/tmvtnorm/man/dtmvt.Rd | 16 -
tmvtnorm-1.4-7/tmvtnorm/man/gmm.tmvnorm.Rd | 2
tmvtnorm-1.4-7/tmvtnorm/man/mtmvnorm.Rd | 10
tmvtnorm-1.4-7/tmvtnorm/man/ptmvnorm.marginal.Rd | 24 +-
tmvtnorm-1.4-7/tmvtnorm/man/rtmvnorm.Rd | 9
tmvtnorm-1.4-7/tmvtnorm/man/rtmvnorm2.Rd |only
tmvtnorm-1.4-7/tmvtnorm/src/rtmvnormgibbs.f90 | 175 +++++++++++++++++
22 files changed, 448 insertions(+), 170 deletions(-)
Title: Automatic Generation of Exams in R
Diff between exams versions 1.0-4 dated 2011-08-22 and 1.9-0 dated 2012-12-17
Description: Sweave-based automatic generation of exams including
multiple-choice questions and arithmetic problems. Exams can be
produced in various formats, including PDF, HTML, Moodle XML,
QTI 1.2 (for OLAT).
Author: Achim Zeileis [aut, cre], Bettina Gruen [aut], Friedrich Leisch
[aut], Nikolaus Umlauf [aut]
Maintainer: Achim Zeileis
exams-1.0-4/exams/inst/doc/exams.bib |only
exams-1.9-0/exams/DESCRIPTION | 34 +++++++++----
exams-1.9-0/exams/MD5 | 64 ++++++++++++++++++++------
exams-1.9-0/exams/NAMESPACE | 41 ++++++++++++++++
exams-1.9-0/exams/NEWS | 11 ++++
exams-1.9-0/exams/R/exams.R | 27 ++++------
exams-1.9-0/exams/R/exams2html.R |only
exams-1.9-0/exams/R/exams2lops.R |only
exams-1.9-0/exams/R/exams2moodle.R |only
exams-1.9-0/exams/R/exams2pdf.R |only
exams-1.9-0/exams/R/exams2qti12.R |only
exams-1.9-0/exams/R/fileURI.R |only
exams-1.9-0/exams/R/formatters.R |only
exams-1.9-0/exams/R/read_exercise.R |only
exams-1.9-0/exams/R/read_metainfo.R |only
exams-1.9-0/exams/R/tex2image.R |only
exams-1.9-0/exams/R/transformers.R |only
exams-1.9-0/exams/R/xexams.R |only
exams-1.9-0/exams/inst/CITATION | 30 ++++++++++--
exams-1.9-0/exams/inst/doc/exams.Rnw | 28 +++++++----
exams-1.9-0/exams/inst/doc/exams.pdf |binary
exams-1.9-0/exams/inst/doc/exams2.Rnw |only
exams-1.9-0/exams/inst/doc/exams2.pdf |only
exams-1.9-0/exams/inst/exercises/boxhist.Rnw |only
exams-1.9-0/exams/inst/exercises/boxplots.Rnw | 42 +++++++----------
exams-1.9-0/exams/inst/exercises/cholesky.Rnw |only
exams-1.9-0/exams/inst/exercises/lagrange.Rnw |only
exams-1.9-0/exams/inst/exercises/tstat2.Rnw |only
exams-1.9-0/exams/inst/tex/exam.tex | 2
exams-1.9-0/exams/inst/tex/html-plain.tex |only
exams-1.9-0/exams/inst/tex/plain.tex | 5 +-
exams-1.9-0/exams/inst/tex/solution.tex | 2
exams-1.9-0/exams/inst/xml |only
exams-1.9-0/exams/man/exams.Rd | 6 ++
exams-1.9-0/exams/man/exams2html.Rd |only
exams-1.9-0/exams/man/exams2lops.Rd |only
exams-1.9-0/exams/man/exams2moodle.Rd |only
exams-1.9-0/exams/man/exams2pdf.Rd |only
exams-1.9-0/exams/man/exams2qti12.Rd |only
exams-1.9-0/exams/man/mchoice2string.Rd | 52 ++++++++++++++-------
exams-1.9-0/exams/man/read_exercise.Rd |only
exams-1.9-0/exams/man/tex2image.Rd |only
exams-1.9-0/exams/man/xexams.Rd |only
exams-1.9-0/exams/vignettes |only
44 files changed, 245 insertions(+), 99 deletions(-)
Title: Visualization of Categorical Response Models
Diff between EffectStars versions 1.2 dated 2012-11-22 and 1.3 dated 2012-12-17
Description: The package provides functions to visualize regression
models with categorical response. The effects of the covariates
are plotted with star plots in order to allow for an optical
impression of the fitted model.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger
DESCRIPTION | 9 +++++----
MD5 | 4 ++--
inst/doc/election.pdf |binary
3 files changed, 7 insertions(+), 6 deletions(-)
Title: Variational Bayesian mixture models
Diff between VBmix versions 0.2.9 dated 2012-10-22 and 0.2.10 dated 2012-12-17
Description: Variational algorithms and methods for fitting mixture
models. Main functions are varbayes, vbcomp, vbconstr, mppca,
mmppca and gmmkmsock.
Author: Pierrick Bruneau
Maintainer: Pierrick Bruneau
VBmix-0.2.10/VBmix/DESCRIPTION | 9
VBmix-0.2.10/VBmix/MD5 | 13 -
VBmix-0.2.10/VBmix/configure | 442 +++++++++++++++++++-----------------
VBmix-0.2.10/VBmix/configure.ac | 2
VBmix-0.2.10/VBmix/data/VBmix.RData |binary
VBmix-0.2.10/VBmix/man/varbayes.Rd | 15 +
VBmix-0.2.10/VBmix/src/varbayes.c | 14 -
VBmix-0.2.9/VBmix/cleanup |only
8 files changed, 275 insertions(+), 220 deletions(-)
Title: SNPs-based whole genome association studies
Diff between SNPassoc versions 1.8-4 dated 2012-09-03 and 1.8-5 dated 2012-12-17
Description: This package carries out most common analysis when
performing whole genome association studies. These analyses
include descriptive statistics and exploratory analysis of
missing values, calculation of Hardy-Weinberg equilibrium,
analysis of association based on generalized linear models
(either for quantitative or binary traits), and analysis of
multiple SNPs (haplotype and epistasis analysis). Permutation
test and related tests (sum statistic and truncated product)
are also implemented. Max-statistic and genetic risk-allele
score exact distributions are also possible to be estimated.
Author: Juan R González, Lluís Armengol, Elisabet Guinó, Xavier Solé,
and Víctor Moreno
Maintainer: Juan R González
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/expandsetupSNP.R | 4 ++++
inst/docs/changelog.txt | 4 ++++
4 files changed, 15 insertions(+), 7 deletions(-)
Title: Pedigree functions
Diff between pedigree versions 1.3.2 dated 2011-12-27 and 1.4 dated 2012-12-17
Description: Pedigree related functions
Author: Albart Coster [aut, cre]
Maintainer: Albart Coster
pedigree-1.3.2/pedigree/R/errors.ped.R |only
pedigree-1.3.2/pedigree/man/errors.ped.Rd |only
pedigree-1.4/pedigree/ChangeLog |only
pedigree-1.4/pedigree/DESCRIPTION | 14 ++-
pedigree-1.4/pedigree/MD5 | 26 +++---
pedigree-1.4/pedigree/NAMESPACE | 4 -
pedigree-1.4/pedigree/R/OldcountGen.R |only
pedigree-1.4/pedigree/R/drivers.r | 29 +++++--
pedigree-1.4/pedigree/R/gblup.R | 2
pedigree-1.4/pedigree/R/read.Hendixpedigree.R |only
pedigree-1.4/pedigree/R/read.IPGpedigree.R |only
pedigree-1.4/pedigree/man/add.Inds.Rd | 4 -
pedigree-1.4/pedigree/man/makeA.Rd | 4 -
pedigree-1.4/pedigree/man/orderPed.Rd | 2
pedigree-1.4/pedigree/man/pedigree-package.Rd | 1
pedigree-1.4/pedigree/src/Pedigree.cpp | 100 +++++++++++++++-----------
pedigree-1.4/pedigree/src/Pedigree.h | 2
17 files changed, 112 insertions(+), 76 deletions(-)
Title: PAC-Bayesian Estimation and Prediction in Sparse Additive
Models.
Diff between pacbpred versions 0.9 dated 2012-08-21 and 0.92 dated 2012-12-17
Description: This package is intended to perform estimation and
prediction in high-dimensional additive models, using a sparse
PAC-Bayesian point of view and a MCMC algorithm. The method is
fully described in Guedj and Alquier (2012), 'PAC-Bayesian
Estimation and Prediction in Sparse Additive Models'.
Author: Benjamin Guedj
Maintainer: Benjamin Guedj
DESCRIPTION | 10 ++--
MD5 | 12 ++--
NAMESPACE | 3 -
R/pacbpred.R | 52 ++++++++++++++------
R/zzz.R |only
inst |only
man/pacbpred-package.Rd | 52 ++++++++++++--------
man/pacbpred.Rd | 119 +++++++++++++++++++++++++++---------------------
8 files changed, 148 insertions(+), 100 deletions(-)
Title: Functions for nonlinear least squares solutions
Diff between nlmrt versions 2012-8.12 dated 2012-08-13 and 2012-12.16 dated 2012-12-17
Description: nlmrt provides tools for working with nonlinear least
squares problems using a calling structure similar to, but much
simpler than, that of the nls() function. Moreover, where nls()
specifically does NOT deal with small or zero residual
problems, nlmrt is quite happy to solve them. It also attempts
to be more robust in finding solutions, thereby avoiding
'singular gradient' messages that arise in the Gauss-Newton
method within nls(). The Marquardt-Nash approach in nlmrt
generally works more reliably to get a solution, though this
may be one of a set of possibilities, and may also be
statistically unsatisfactory. Added print and summary as of
August 28, 2012.
Author: John C. Nash
Maintainer: John C. Nash
DESCRIPTION | 16 +-
MD5 | 21 ++-
Makefile |only
NEWS | 17 ++-
R/nlfb.R | 10 +
R/nlmrt.R |only
R/nlxb.R | 19 ++-
inst/dev-codes/seboundsnlmrtx.R |only
inst/doc/nlmrt-vignette.Rnw | 8 -
inst/doc/nlmrt-vignette.pdf |binary
man/nlmrt-package.Rd | 214 ++++++++++++++++++++--------------------
man/print.nlmrt.Rd |only
man/summary.nlmrt.Rd |only
man/wrapnls.Rd | 2
14 files changed, 166 insertions(+), 141 deletions(-)
Title: Estimation and simulation of CARMA(p,q)
Diff between ctarma versions 0.1.2 dated 2012-04-04 and 0.1.3 dated 2012-12-17
Description: Estimation and simulation of CARMA(p,q),
continous-time-autoregressive-moving-average models
Author: Helgi Tomasson
Maintainer: Helgi Tomasson
ctarma-0.1.2/ctarma/R/firstlib.r |only
ctarma-0.1.3/ctarma/DESCRIPTION | 8 ++++----
ctarma-0.1.3/ctarma/MD5 | 12 ++++++------
ctarma-0.1.3/ctarma/NEWS | 5 +++++
ctarma-0.1.3/ctarma/R/onload.r |only
ctarma-0.1.3/ctarma/man/climate.rd | 20 ++++++++++----------
ctarma-0.1.3/ctarma/man/ctarma.whittle.rd | 3 +--
ctarma-0.1.3/ctarma/src/vinfinitylapack.f | 2 +-
8 files changed, 27 insertions(+), 23 deletions(-)
Title: Example data for analysing OmniLog(R) Phenotype Microarray data
Diff between opmdata versions 0.2-0 dated 2012-11-13 and 0.3-0 dated 2012-12-17
Description: The package `opm' provides tools for analysing OmniLog(R)
Phenotype Microarray (PM) data as produced by the device
distributed by BIOLOG Inc. The package `opmdata' contains the
entire example dataset from Vaas et al. (2012), which has been
removed from `opm' due to its size.
Author: Markus Goeker, with contributions by Lea A.I. Vaas and Johannes
Sikorski
Maintainer: Markus Goeker
ChangeLog | 9 +++++++--
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NEWS | 7 ++++++-
R/data.R | 10 ++++++----
man/vaas_et_al.Rd | 14 ++++++++------
6 files changed, 36 insertions(+), 22 deletions(-)
Title: MBESS
Diff between MBESS versions 3.3.2 dated 2012-09-03 and 3.3.3 dated 2012-12-17
Description: MBESS implements methods that are especially useful to
researchers working within the behavioral, educational, and
social sciences (both substantive researchers and
methodologists), Many of the methods contained within MBESS are
applicable to quantitative research in general,
Author: Ken Kelley and Keke Lai
Maintainer: Keke Lai
DESCRIPTION | 8 +--
MD5 | 16 +++---
R/conf.limits.nc.chisq.R | 26 ++++++----
R/ss.aipe.sem.path.R | 2
man/MBESS-package.Rd | 4 -
man/conf.limits.nc.chisq.Rd | 96 +++++++++++++++++++--------------------
man/ss.aipe.rmsea.sensitivity.Rd | 6 +-
man/ss.aipe.sem.path.Rd | 2
man/ss.aipe.sem.path.sensitiv.Rd | 2
9 files changed, 85 insertions(+), 77 deletions(-)
Title: Visualizing Hypothesis Tests in Multivariate Linear Models
Diff between heplots versions 1.0-0 dated 2012-08-08 and 1.0-2 dated 2012-12-17
Description: Provides HE plot functions for visualizing hypothesis
tests in multivariate linear models. They represents
sums-of-squares-and-products matrices for linear hypotheses and
for error using ellipses (in two dimensions) and ellipsoids (in
three dimensions).
Author: John Fox, Michael Friendly, and Georges Monette
Maintainer: Michael Friendly
heplots-1.0-0/heplots/vignettes/fig/empty |only
heplots-1.0-2/heplots/DESCRIPTION | 15 -
heplots-1.0-2/heplots/MD5 | 108 +++++++---
heplots-1.0-2/heplots/NAMESPACE | 7
heplots-1.0-2/heplots/NEWS | 6
heplots-1.0-2/heplots/R/heplot3d.R | 7
heplots-1.0-2/heplots/R/robmlm.R |only
heplots-1.0-2/heplots/data/Adopted.RData |binary
heplots-1.0-2/heplots/data/Bees.rda |binary
heplots-1.0-2/heplots/data/FootHead.rda |binary
heplots-1.0-2/heplots/data/Headache.RData |binary
heplots-1.0-2/heplots/data/Hernior.RData |binary
heplots-1.0-2/heplots/data/MockJury.RData |binary
heplots-1.0-2/heplots/data/Oslo.RData |binary
heplots-1.0-2/heplots/data/Plastic.rda |binary
heplots-1.0-2/heplots/data/Probe1.RData |binary
heplots-1.0-2/heplots/data/Probe2.RData |binary
heplots-1.0-2/heplots/data/RatWeight.RData |binary
heplots-1.0-2/heplots/data/ReactTime.RData |binary
heplots-1.0-2/heplots/data/Rohwer.rda |binary
heplots-1.0-2/heplots/data/RootStock.rda |binary
heplots-1.0-2/heplots/data/Sake.RData |binary
heplots-1.0-2/heplots/data/Skulls.RData |binary
heplots-1.0-2/heplots/data/SocGrades.RData |binary
heplots-1.0-2/heplots/data/VocabGrowth.rda |binary
heplots-1.0-2/heplots/data/WeightLoss.RData |binary
heplots-1.0-2/heplots/data/schooldata.RData |only
heplots-1.0-2/heplots/inst/doc/HE-examples.Rnw | 4
heplots-1.0-2/heplots/inst/doc/HE-examples.pdf |binary
heplots-1.0-2/heplots/inst/doc/repeated.pdf |binary
heplots-1.0-2/heplots/man/heplot-package.Rd | 4
heplots-1.0-2/heplots/man/robmlm.Rd |only
heplots-1.0-2/heplots/man/schooldata.Rd |only
heplots-1.0-2/heplots/vignettes/HE-examples.Rnw | 4
heplots-1.0-2/heplots/vignettes/fig/plot-Ortho-fm1.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-Ortho-fm3.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-grades-can-class.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-grades-can-gpa.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-grades-can-sex.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-grades-mod3-pairs.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-grades-pairs.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-hern-can-age.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-hern-can-build.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-hern-can-cardiac.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-hern-can-pstat.pdf |only
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heplots-1.0-2/heplots/vignettes/fig/plot-jury-can1.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-jury-can1a.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-jury-mod1-HE.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-jury-mod1-pairs.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-jury-mod2-HE.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-jury-mod3-eff.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-jury.can1.pdf |only
heplots-1.0-2/heplots/vignettes/fig/plot-obk-HE1.pdf |only
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heplots-1.0-2/heplots/vignettes/fig/plot-obk2-HE2.pdf |only
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heplots-1.0-2/heplots/vignettes/fig/plot-ortho-xyplot1.pdf |only
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81 files changed, 110 insertions(+), 45 deletions(-)
Title: Distance-based measures of spatial structures
Diff between dbmss versions 1.2.3 dated 2012-11-15 and 1.2.4 dated 2012-12-17
Description: This package allows simple computation of a full set of
spatial statistic functions of distance, including classical
ones (Ripley's K and others) and more recent onces used by
spatial economists (Duranton and Overman's Kd, Marcon and
Puech's M). It relies on spatstat for core calculation.
Author: Eric Marcon, Gabriel Lang, Stephane Traissac, Florence Puech
Maintainer: Eric Marcon
DESCRIPTION | 8 +--
MD5 | 82 ++++++++++++++++++++--------------------
R/Kd.r.R | 13 ++++--
R/Ktest.r | 75 ++++++++++++++++++------------------
man/CriticalValues.Rd | 8 +--
man/D.r.Rd | 19 ++++-----
man/DEnvelope.Rd | 20 +++++----
man/DivideByPiR2.Rd | 13 +++---
man/GlobalEnvelope.Rd | 16 +++----
man/GoFtest.Rd | 19 ++++-----
man/K.r.Rd | 14 +++---
man/KEnvelope.Rd | 18 ++++----
man/Kd.r.Rd | 30 +++++++-------
man/KdEnvelope.Rd | 20 +++++----
man/Kinhom.r.Rd | 16 +++----
man/KinhomEnvelope.Rd | 27 +++++++------
man/Kmm.r.Rd | 14 +++---
man/KmmEnvelope.Rd | 13 +++---
man/Ktest.Rd | 6 +-
man/KtoL.Rd | 4 -
man/L.r.Rd | 12 ++---
man/LEnvelope.Rd | 15 +++----
man/Lmm.r.Rd | 12 ++---
man/LmmEnvelope.Rd | 10 ++--
man/M.r.Rd | 14 +++---
man/MEnvelope.Rd | 20 +++++----
man/PlotResults.Rd | 18 +++++---
man/PopulationIndependence.K.Rd | 6 +-
man/PopulationIndependence.M.Rd | 11 ++---
man/RandomLabeling.M.Rd | 8 +--
man/RandomPosition.K.Rd | 4 -
man/SimulateD.Rd | 6 +-
man/SimulateK.Rd | 6 +-
man/SimulateKd.Rd | 8 +--
man/SimulateKinhom.Rd | 8 +--
man/SimulateKmm.Rd | 4 -
man/SimulateM.Rd | 8 +--
man/Simulateg.Rd | 6 +-
man/dbmss-package.Rd | 8 +--
man/g.r.Rd | 12 ++---
man/gEnvelope.Rd | 18 ++++----
man/paracou16.Rd | 4 -
42 files changed, 341 insertions(+), 312 deletions(-)
Title: Compute the NPMLE of distribution from doubly censored data
Diff between dblcens versions 1.1.6 dated 2010-04-28 and 1.1.7 dated 2012-12-17
Description: Use EM algorithm to compute the NPMLE of CDF and also the
two censoring distributions. For doubly censored data (as
described in Chang and Yang (1987) Ann. Stat. 1536-47). You can
also specify a constraint, it will return the constrained NPMLE
and the -2 log empirical likelihood ratio. This can be used to
test the hypothesis about the constraint and find confidence
intervals for probability or quantile via empirical likelihood
ratio theorem. Influence function of hat F may also be
calculated (but may be slow).
Author: Mai Zhou, Li Lee, Kun Chen.
Maintainer: Mai Zhou
dblcens-1.1.6/dblcens/R/zzz.R |only
dblcens-1.1.7/dblcens/DESCRIPTION | 12 +++++-------
dblcens-1.1.7/dblcens/INDEX | 10 +++++-----
dblcens-1.1.7/dblcens/MD5 |only
dblcens-1.1.7/dblcens/NAMESPACE |only
dblcens-1.1.7/dblcens/R/d011.R | 14 +++++++-------
dblcens-1.1.7/dblcens/man/IVaids.Rd | 7 +++++--
dblcens-1.1.7/dblcens/man/d011.Rd | 14 +++++++-------
dblcens-1.1.7/dblcens/man/d011ch.Rd | 11 +++--------
9 files changed, 32 insertions(+), 36 deletions(-)
Title: Fit Regularized Nonparametric Regression Models Using COSSO
Penalty.
Diff between cosso versions 2.0-2 dated 2012-05-26 and 2.1-0 dated 2012-12-17
Description: COSSO is the short term for COmponent Selection and
Smoothing Operator. The new regularization method automatically
estimates and selects important function components by a
soft-thresholding penalty in the context of smoothing spline
ANOVA models.
Author: Hao Helen Zhang
Maintainer: Chen-Yen Lin
cosso-2.0-2/cosso/man/KQR.rd |only
cosso-2.1-0/cosso/DESCRIPTION | 23 -
cosso-2.1-0/cosso/INDEX | 17
cosso-2.1-0/cosso/MD5 | 36 +-
cosso-2.1-0/cosso/NAMESPACE | 5
cosso-2.1-0/cosso/R/R.R | 558 ++++++++++++++++++++++++++++----
cosso-2.1-0/cosso/data/ozone.RData |binary
cosso-2.1-0/cosso/data/veteran.RData |only
cosso-2.1-0/cosso/man/KQRwt.rd | 41 +-
cosso-2.1-0/cosso/man/SSANOVAwt.cox.rd |only
cosso-2.1-0/cosso/man/SSANOVAwt.rd | 17
cosso-2.1-0/cosso/man/cosso-internal.Rd | 12
cosso-2.1-0/cosso/man/cosso.Rd | 42 ++
cosso-2.1-0/cosso/man/cosso.cox.Rd |only
cosso-2.1-0/cosso/man/cosso.qr.Rd | 36 +-
cosso-2.1-0/cosso/man/ozone.Rd | 26 -
cosso-2.1-0/cosso/man/plot.cosso.Rd | 17
cosso-2.1-0/cosso/man/predict.cosso.Rd | 18 -
cosso-2.1-0/cosso/man/tune.cosso.Rd | 12
cosso-2.1-0/cosso/man/tune.cosso.cox.rd |only
cosso-2.1-0/cosso/man/tune.cosso.qr.rd | 16
cosso-2.1-0/cosso/man/veteran.Rd |only
22 files changed, 700 insertions(+), 176 deletions(-)
Title: Probabilistic Population Projection
Diff between bayesPop versions 2.0-2 dated 2012-06-07 and 3.1-8 dated 2012-12-17
Description: The package allows to generate population projections for
all countries of the world using several probabilistic
components, such as total fertility rate (TFR) and life
expectancy.
Author: Hana Sevcikova, Adrian Raftery
Maintainer: Hana Sevcikova
bayesPop-2.0-2/bayesPop/inst/ex-data/Pop/predictions/totpop_country242.rda |only
bayesPop-2.0-2/bayesPop/inst/ex-data/Pop/predictions/totpop_country450.rda |only
bayesPop-2.0-2/bayesPop/inst/ex-data/Pop/predictions/totpop_country458.rda |only
bayesPop-3.1-8/bayesPop/ChangeLog | 57
bayesPop-3.1-8/bayesPop/DESCRIPTION | 12
bayesPop-3.1-8/bayesPop/MD5 | 46
bayesPop-3.1-8/bayesPop/NAMESPACE | 13
bayesPop-3.1-8/bayesPop/R/aggregate.R | 64
bayesPop-3.1-8/bayesPop/R/get_outputs.R | 808 +++++++++-
bayesPop-3.1-8/bayesPop/R/plot_functions.R | 704 +++++---
bayesPop-3.1-8/bayesPop/R/predict.pop.R | 647 +++++++-
bayesPop-3.1-8/bayesPop/inst/ex-data/Pop/predictions/prediction.rda |binary
bayesPop-3.1-8/bayesPop/inst/ex-data/Pop/predictions/totpop_country218.rda |binary
bayesPop-3.1-8/bayesPop/inst/ex-data/Pop/predictions/totpop_country528.rda |binary
bayesPop-3.1-8/bayesPop/man/PopByAge.Rd | 4
bayesPop-3.1-8/bayesPop/man/bayesPop-package.Rd | 14
bayesPop-3.1-8/bayesPop/man/expressions.Rd |only
bayesPop-3.1-8/bayesPop/man/get.pop.prediction.Rd | 9
bayesPop-3.1-8/bayesPop/man/pop.aggregate.Rd | 7
bayesPop-3.1-8/bayesPop/man/pop.map.Rd |only
bayesPop-3.1-8/bayesPop/man/pop.pyramid.Rd | 2
bayesPop-3.1-8/bayesPop/man/pop.trajectories.plot.Rd | 43
bayesPop-3.1-8/bayesPop/man/pop.write.projection.summary.Rd |only
bayesPop-3.1-8/bayesPop/man/predict.pop.Rd | 18
bayesPop-3.1-8/bayesPop/src/projection_functions.c | 205 ++
bayesPop-3.1-8/bayesPop/tests/run_tests.R | 3
bayesPop-3.1-8/bayesPop/tests/test_functions.R | 26
27 files changed, 2213 insertions(+), 469 deletions(-)