Title: Nonlinear time series models with regime switching
Diff between tsDyn versions 0.9-1 dated 2012-11-08 and 0.9-2 dated 2012-12-21
Description: Implements nonlinear autoregressive (AR) time series
models. For univariate series, a non-parametric approach is
available through additive nonlinear AR. Parametric modeling
and testing for regime switching dynamics is available when the
transition is either direct (TAR: threshold AR) or smooth
(STAR: smooth transition AR, LSTAR). For multivariate series,
one can estimate a range of TVAR or threshold cointegration
TVECM models with two or three regimes. Tests can be conducted
for TVAR as well as for TVECM (Hansen and Seo 2002 and Seo
2006).
Author: Antonio Fabio Di Narzo [aut, cre], Jose Luis Aznarte [ctb],
Matthieu Stigler [aut, cre]
Maintainer: Matthieu Stigler
tsDyn-0.9-1/tsDyn/R/far.R |only
tsDyn-0.9-1/tsDyn/R/guiSystem.R |only
tsDyn-0.9-1/tsDyn/R/tgarch.R |only
tsDyn-0.9-1/tsDyn/R/tsDynGUI.R |only
tsDyn-0.9-1/tsDyn/man/nlarDialog.Rd |only
tsDyn-0.9-2/tsDyn/DESCRIPTION | 16
tsDyn-0.9-2/tsDyn/MD5 | 71 +-
tsDyn-0.9-2/tsDyn/NAMESPACE | 13
tsDyn-0.9-2/tsDyn/R/TVAR_LRtest.R | 727 ++++++++++++-------------
tsDyn-0.9-2/tsDyn/R/TVARestim.R | 2
tsDyn-0.9-2/tsDyn/R/aar.R | 19
tsDyn-0.9-2/tsDyn/R/accuracy.R |only
tsDyn-0.9-2/tsDyn/R/autopairs.R | 57 -
tsDyn-0.9-2/tsDyn/R/autotriples.R | 57 -
tsDyn-0.9-2/tsDyn/R/deprecated_guiSystem.R |only
tsDyn-0.9-2/tsDyn/R/deprecated_tsDynGUI.R |only
tsDyn-0.9-2/tsDyn/R/lineVar.R | 1
tsDyn-0.9-2/tsDyn/R/linear.R | 19
tsDyn-0.9-2/tsDyn/R/lstar.R | 43 -
tsDyn-0.9-2/tsDyn/R/nnet.R | 24
tsDyn-0.9-2/tsDyn/R/predict.R | 10
tsDyn-0.9-2/tsDyn/R/predict_rolling.R | 445 ++++++++++++---
tsDyn-0.9-2/tsDyn/R/setar.R | 48 -
tsDyn-0.9-2/tsDyn/R/star.R | 41 -
tsDyn-0.9-2/tsDyn/R/vec2var.tsDyn.R | 16
tsDyn-0.9-2/tsDyn/inst/ChangeLog | 14
tsDyn-0.9-2/tsDyn/inst/doc/ThCointOverview.pdf |binary
tsDyn-0.9-2/tsDyn/inst/doc/tsDyn.Stex | 6
tsDyn-0.9-2/tsDyn/inst/doc/tsDyn.pdf |binary
tsDyn-0.9-2/tsDyn/man/accuracy_stat.Rd |only
tsDyn-0.9-2/tsDyn/man/autopairs.Rd | 8
tsDyn-0.9-2/tsDyn/man/autotriples.Rd | 10
tsDyn-0.9-2/tsDyn/man/predict.Rd | 11
tsDyn-0.9-2/tsDyn/man/predict_rolling.Rd | 6
tsDyn-0.9-2/tsDyn/tests/VAR.R | 108 ++-
tsDyn-0.9-2/tsDyn/tests/VAR.Rout.save | 215 ++++---
tsDyn-0.9-2/tsDyn/tests/VECM.R | 68 +-
tsDyn-0.9-2/tsDyn/tests/VECM.Rout.save | 299 +++++-----
tsDyn-0.9-2/tsDyn/tests/nlar-methods.R | 21
tsDyn-0.9-2/tsDyn/tests/nlar-methods.Rout.save | 100 +++
tsDyn-0.9-2/tsDyn/vignettes/tsDyn.Stex | 6
41 files changed, 1410 insertions(+), 1071 deletions(-)
Title: Tools for Social Network Analysis
Diff between sna versions 2.2-0 dated 2010-11-22 and 2.2-1 dated 2012-12-21
Description: A range of tools for social network analysis, including
node and graph-level indices, structural distance and
covariance methods, structural equivalence detection, p*
modeling, random graph generation, and 2D/3D network
visualization.
Author: Carter T. Butts
Maintainer: ORPHANED
sna-2.2-0/sna/R/zzz.R |only
sna-2.2-1/sna/DESCRIPTION | 15 +++++++++------
sna-2.2-1/sna/MD5 |only
sna-2.2-1/sna/NAMESPACE |only
4 files changed, 9 insertions(+), 6 deletions(-)
Title: Image Reading Module for R
Description: This package provides functions for reading JPEG and PNG
files.
Author: Markus Loecher, Nikon Systems Inc, Nikon Digital Technologies
Co., Ltd.
Maintainer: ORPHANED
Diff between ReadImages versions 0.1.3.2 dated 2012-04-19 and 0.1.3.3 dated 2012-12-21
ReadImages-0.1.3.2/ReadImages/R/zzz.R |only ReadImages-0.1.3.3/ReadImages/DESCRIPTION | 17 ++++++++++------- ReadImages-0.1.3.3/ReadImages/MD5 | 5 ++--- ReadImages-0.1.3.3/ReadImages/NAMESPACE | 3 +-- 4 files changed, 13 insertions(+), 12 deletions(-)
Title: Redundancy Control in Pathways databases
Diff between ReCiPa versions 2.2 dated 2012-11-21 and 3.0 dated 2012-12-21
Description: Pathways in a database could have many redundancies among
them. This package allows the user to set a maximum value for
the proportion of these redundancies.
Author: Juan C. Vivar
Maintainer: Juan C. Vivar
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
R/ReCiPa.R | 29 ++++++++++++++++++++++++-----
man/ReCiPa.Rd | 8 ++++----
4 files changed, 37 insertions(+), 18 deletions(-)
Title: Model species distributions by estimating the probability of
occurrence using presence-only data.
Diff between maxlike versions 0.1-1 dated 2012-02-18 and 0.1-2 dated 2012-12-21
Description: Provides a likelihood-based approach to modeling species
distributions using presence-only data. In contrast to the
popular software program MAXENT, this approach yields estimates
of the probability of occurrence, which is a natural descriptor
of a species' distribution.
Author: Richard Chandler and Andy Royle
Maintainer: Richard Chandler
DESCRIPTION | 8 ++--
MD5 | 18 +++++----
NAMESPACE | 1
NEWS |only
R/fmMethods.R | 69 ++++++++++++++++++++++++++++++++----
R/maxlike.R | 45 ++++++++++++++++-------
inst/CITATION |only
inst/test/runit.maxlike.R | 19 +++++++---
inst/test/sim.maxlike.R | 67 +++++++++++++++++++++++++++++++++++
man/maxlike-package.Rd | 8 ++--
man/maxlike.Rd | 87 +++++++++++++++++++++++++---------------------
11 files changed, 243 insertions(+), 79 deletions(-)
Title: ML estimation for multivariate normal data with missing values.
Description: Finds the maximum likelihood estimate of the mean vector
and variance-covariance matrix for multivariate normal data
with missing values.
Author: Kevin Gross, with help from Douglas Bates
Maintainer: ORPHANED
Diff between mvnmle versions 0.1-10 dated 2011-06-30 and 0.1-11 dated 2012-12-21
mvnmle-0.1-10/mvnmle/R/zzz.R |only mvnmle-0.1-11/mvnmle/DESCRIPTION | 11 +++++++---- mvnmle-0.1-11/mvnmle/MD5 |only mvnmle-0.1-11/mvnmle/NAMESPACE |only 4 files changed, 7 insertions(+), 4 deletions(-)
Title: Statistical tools for the interpretation of forensic DNA
mixtures
Diff between forensim versions 3.2 dated 2012-08-07 and 3.2.1 dated 2012-12-21
Description: Statistical methods and simulation tools for the
interpretation of forensic DNA mixtures
Author: Hinda Haned
Maintainer: Hinda Haned
DESCRIPTION | 11 +-
MD5 | 8 +-
R/LR.R | 5 +
R/LRmixTK.R | 238 +++++++++++++++++++++++++++++++++++++++++++++++-------------
R/zzz.R | 2
5 files changed, 203 insertions(+), 61 deletions(-)
Title: Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
Diff between caTools versions 1.13 dated 2012-05-23 and 1.14 dated 2012-12-21
Description: Contains several basic utility functions including: moving
(rolling, running) window statistic functions, read/write for
GIF and ENVI binary files, fast calculation of AUC, LogitBoost
classifier, base64 encoder/decoder, round-off error free sum
and cumsum, etc.
Author: Jarek Tuszynski
Maintainer: ORPHANED
caTools-1.13/caTools/R/zzz.R |only
caTools-1.14/caTools/DESCRIPTION | 15 +++++++++------
caTools-1.14/caTools/MD5 | 7 +++----
caTools-1.14/caTools/NAMESPACE | 9 +++------
caTools-1.14/caTools/R/base64.R | 2 --
5 files changed, 15 insertions(+), 18 deletions(-)
Title: Statistical Procedures for Agricultural Research
Diff between agricolae versions 1.1-2 dated 2012-07-06 and 1.1-3 dated 2012-12-21
Description: Agricolae was presented in the thesis "A statistical
analysis tool for agricultural research" to obtain the degree
of Master on science, mention Systems Engineering, Faculty of
Industrial and Systems Engineering, National Engineering
University (UNI), Lima-Peru Agricolae offers extensive
functionality on experimental design especially for
agricultural and plant breeding experiments, which can also be
useful for other purposes. It supports planning of lattice,
Alpha, Cyclic, Complete Block, Latin Square, Graeco-Latin
Squares, augmented block, split and strip plot designs. There
are also various analysis facilities for experimental data,
e.g. treatment comparison procedures and several non-parametric
tests comparison, biodiversity indexes and consensus cluster.
Author: Felipe de Mendiburu
Maintainer: Felipe de Mendiburu
agricolae-1.1-2/agricolae/inst/doc/ESagricolae.pdf |only
agricolae-1.1-3/agricolae/DESCRIPTION | 8
agricolae-1.1-3/agricolae/MD5 | 74 ++--
agricolae-1.1-3/agricolae/R/BIB.test.R | 334 +++++++++++----------
agricolae-1.1-3/agricolae/R/DAU.test.R | 97 ++++--
agricolae-1.1-3/agricolae/R/HSD.test.R | 176 ++++++-----
agricolae-1.1-3/agricolae/R/LSD.test.R | 259 ++++++++--------
agricolae-1.1-3/agricolae/R/PBIB.test.R | 86 +++--
agricolae-1.1-3/agricolae/R/SNK.test.R | 192 ++++++------
agricolae-1.1-3/agricolae/R/bar.err.R | 32 +-
agricolae-1.1-3/agricolae/R/bar.group.R | 1
agricolae-1.1-3/agricolae/R/design.alpha.R | 4
agricolae-1.1-3/agricolae/R/design.bib.R | 4
agricolae-1.1-3/agricolae/R/design.lattice.R | 19 +
agricolae-1.1-3/agricolae/R/duncan.test.r | 201 +++++++-----
agricolae-1.1-3/agricolae/R/durbin.test.R | 34 +-
agricolae-1.1-3/agricolae/R/friedman.R | 33 +-
agricolae-1.1-3/agricolae/R/kruskal.R | 215 +++++++------
agricolae-1.1-3/agricolae/R/scheffe.test.R | 174 ++++++----
agricolae-1.1-3/agricolae/R/waerden.test.R | 53 ++-
agricolae-1.1-3/agricolae/R/waller.test.R | 201 +++++++-----
agricolae-1.1-3/agricolae/inst/doc/ENagricolae.pdf |binary
agricolae-1.1-3/agricolae/inst/doc/SPagricolae.pdf |only
agricolae-1.1-3/agricolae/man/BIB.test.Rd | 25 -
agricolae-1.1-3/agricolae/man/HSD.test.Rd | 8
agricolae-1.1-3/agricolae/man/LSD.test.Rd | 10
agricolae-1.1-3/agricolae/man/PBIB.test.Rd | 20 -
agricolae-1.1-3/agricolae/man/agricolae-package.Rd | 4
agricolae-1.1-3/agricolae/man/bar.err.Rd | 37 +-
agricolae-1.1-3/agricolae/man/bar.group.Rd | 5
agricolae-1.1-3/agricolae/man/consensus.Rd | 6
agricolae-1.1-3/agricolae/man/design.bib.Rd | 10
agricolae-1.1-3/agricolae/man/design.lattice.Rd | 2
agricolae-1.1-3/agricolae/man/durbin.test.Rd | 6
agricolae-1.1-3/agricolae/man/friedman.Rd | 4
agricolae-1.1-3/agricolae/man/order.group.Rd | 13
agricolae-1.1-3/agricolae/man/resampling.cv.Rd | 2
agricolae-1.1-3/agricolae/man/resampling.model.Rd | 8
agricolae-1.1-3/agricolae/man/waller.test.Rd | 18 -
39 files changed, 1367 insertions(+), 1008 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-09-18 0.6-16
2009-01-06 0.6-15
2007-05-07 0.6-14
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-04-10 1.3-4
2011-12-02 1.3-2
2011-10-28 1.3-1
2011-05-25 1.3
2011-01-21 1.2
2010-04-02 1.1-1
2009-12-13 1.1-0
2009-05-06 1.0-4
2009-02-03 1.0-3
2009-01-09 1.0-1
2008-12-18 1.0
Title: Ridge regression and other kernels for genomic selection
Diff between rrBLUP versions 4.0 dated 2012-09-18 and 4.1 dated 2012-12-21
Description: Software for genomic prediction with the RR-BLUP mixed
model. One application is to estimate marker effects by ridge
regression; alternatively, BLUPs can be calculated based on an
additive relationship matrix or a Gaussian kernel.
Author: Jeffrey Endelman
Maintainer: Jeffrey Endelman
rrBLUP-4.0/rrBLUP/R/GWA.R |only
rrBLUP-4.0/rrBLUP/inst/doc/vignette.Rnw |only
rrBLUP-4.0/rrBLUP/inst/doc/vignette.pdf |only
rrBLUP-4.0/rrBLUP/man/GWA.Rd |only
rrBLUP-4.1/rrBLUP/DESCRIPTION | 6 -
rrBLUP-4.1/rrBLUP/MD5 | 30 ++---
rrBLUP-4.1/rrBLUP/NAMESPACE | 2
rrBLUP-4.1/rrBLUP/NEWS | 4
rrBLUP-4.1/rrBLUP/R/A.mat.R | 8 +
rrBLUP-4.1/rrBLUP/R/GWAS.R |only
rrBLUP-4.1/rrBLUP/R/kin.blup.R | 155 +++++++++++++++------------
rrBLUP-4.1/rrBLUP/R/mixed.solve.R | 3
rrBLUP-4.1/rrBLUP/inst/doc/GS_tutorial.Rnw |only
rrBLUP-4.1/rrBLUP/inst/doc/GS_tutorial.pdf |only
rrBLUP-4.1/rrBLUP/inst/doc/GWAS_tutorial.Rnw |only
rrBLUP-4.1/rrBLUP/inst/doc/GWAS_tutorial.pdf |only
rrBLUP-4.1/rrBLUP/man/A.mat.Rd | 4
rrBLUP-4.1/rrBLUP/man/GWAS.Rd |only
rrBLUP-4.1/rrBLUP/man/kin.blup.Rd | 17 +-
rrBLUP-4.1/rrBLUP/man/mixed.solve.Rd | 2
rrBLUP-4.1/rrBLUP/man/rrBLUP-package.Rd | 4
21 files changed, 136 insertions(+), 99 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-10-16 1.1-2
2009-04-15 1.1-1
2007-09-26 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-21 1.3.2
2011-06-09 1.3.1
2010-10-12 1.2
Title: Auxiliary functions to estimate centers of biodiversity
Diff between sperich versions 1.4-0 dated 2012-07-17 and 1.5-5 dated 2012-12-21
Description: Provides some easy-to-use functions to interpolate species
range based on species occurrences and to estimate centers of
biodiversity
Author: Maximilian Lange, Sven Lautenbach, Claudia Raedig
Maintainer: Maximilian Lange
sperich-1.4-0/sperich/R/add.Data.to.Grid.R |only
sperich-1.4-0/sperich/man/add.Data.to.Grid.Rd |only
sperich-1.5-5/sperich/DESCRIPTION | 15 -
sperich-1.5-5/sperich/MD5 | 76 +++---
sperich-1.5-5/sperich/NAMESPACE | 8
sperich-1.5-5/sperich/R/createImage.R | 147 ++++++-----
sperich-1.5-5/sperich/R/createNonInterpolatedGrid.R | 15 -
sperich-1.5-5/sperich/R/data.into.Grid.R |only
sperich-1.5-5/sperich/R/exportAsGDAL.R | 75 +++---
sperich-1.5-5/sperich/R/generate.subsamples.R | 22 -
sperich-1.5-5/sperich/R/getNarrowEndemics.R |only
sperich-1.5-5/sperich/R/searchClusters.R | 15 -
sperich-1.5-5/sperich/R/species.range.R | 135 +++++-----
sperich-1.5-5/sperich/R/species.richness.CV.R | 174 +++++++++-----
sperich-1.5-5/sperich/R/species.richness.R | 169 ++++++++-----
sperich-1.5-5/sperich/R/species.richness.main.R | 18 +
sperich-1.5-5/sperich/R/species.richness.nonweighted.R | 118 +++++----
sperich-1.5-5/sperich/index | 19 -
sperich-1.5-5/sperich/man/add.Edges.Rd | 10
sperich-1.5-5/sperich/man/adjustment.Rd | 35 +-
sperich-1.5-5/sperich/man/createHeightmask.Rd | 10
sperich-1.5-5/sperich/man/createImage.Rd | 24 -
sperich-1.5-5/sperich/man/createLandwatermask.Rd | 12
sperich-1.5-5/sperich/man/createNonInterpolatedGrid.Rd | 28 +-
sperich-1.5-5/sperich/man/data.into.Grid.Rd |only
sperich-1.5-5/sperich/man/dataset.all.species.Rd | 4
sperich-1.5-5/sperich/man/edgeNotValid.Rd | 36 +-
sperich-1.5-5/sperich/man/evaluate.Rd | 22 -
sperich-1.5-5/sperich/man/exportAsGDAL.Rd | 22 -
sperich-1.5-5/sperich/man/extract.species.Rd | 12
sperich-1.5-5/sperich/man/fill.Areas.Rd | 16 -
sperich-1.5-5/sperich/man/generate.subsamples.Rd | 14 -
sperich-1.5-5/sperich/man/getDimension.Rd | 12
sperich-1.5-5/sperich/man/getDistance.Rd | 8
sperich-1.5-5/sperich/man/getNarrowEndemics.Rd |only
sperich-1.5-5/sperich/man/getShift.Rd | 8
sperich-1.5-5/sperich/man/searchClusters.Rd | 24 -
sperich-1.5-5/sperich/man/species.range.Rd | 28 +-
sperich-1.5-5/sperich/man/species.richness.CV.Rd | 36 +-
sperich-1.5-5/sperich/man/species.richness.Rd | 37 +-
sperich-1.5-5/sperich/man/species.richness.main.Rd | 31 +-
sperich-1.5-5/sperich/man/species.richness.nonweighted.Rd | 34 +-
42 files changed, 816 insertions(+), 653 deletions(-)
Title: classes and methods for spatial data
Diff between sp versions 1.0-4 dated 2012-12-18 and 1.0-5 dated 2012-12-21
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
Author: Edzer Pebesma [aut, cre], Roger Bivand [aut], Barry Rowlingson
[ctb], Virgilio Gomez-Rubio [ctb]
Maintainer: Edzer Pebesma
sp-1.0-4/sp/inst/doc/sp.pdf |only
sp-1.0-5/sp/ChangeLog | 32 ++++++++++++++++++++++++
sp-1.0-5/sp/DESCRIPTION | 6 ++--
sp-1.0-5/sp/MD5 | 23 ++++++++---------
sp-1.0-5/sp/NAMESPACE | 2 +
sp-1.0-5/sp/R/SpatialGridDataFrame-methods.R | 9 ++++++
sp-1.0-5/sp/R/image.R | 3 +-
sp-1.0-5/sp/inst/ChangeLog | 32 ++++++++++++++++++++++++
sp-1.0-5/sp/inst/doc/intro_sp.pdf |binary
sp-1.0-5/sp/inst/doc/over.pdf |binary
sp-1.0-5/sp/man/SpatialGridDataFrame-class.Rd | 12 ++++++++-
sp-1.0-5/sp/man/image.Rd | 4 +--
sp-1.0-5/sp/tests/Examples/sp-Ex.Rout.save | 34 +++++++++++++++++++++-----
13 files changed, 132 insertions(+), 25 deletions(-)
Title: Seamless R and C++ Integration
Diff between Rcpp versions 0.10.1 dated 2012-11-27 and 0.10.2 dated 2012-12-21
Description: The Rcpp package provides R functions as well as a C++
library which facilitate the integration of R and C++.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ... The "Rcpp-introduction" vignette
provides a good entry point to Rcpp.
Conversion from C++ to R and back is driven by the templates Rcpp::wrap
and Rcpp::as which are highly flexible and extensible, as
documented in the "Rcpp-extending" vignette.
Rcpp also provides Rcpp modules, a framework that allows exposing C++
functions and classes to the R level. The "Rcpp-modules"
vignette details the current set of features of Rcpp-modules.
Rcpp includes a concept called Rcpp sugar that brings many R functions
into C++. Sugar takes advantage of lazy evaluation and
expression templates to achieve great performance while
exposing a syntax that is much nicer to use than the equivalent
low-level loop code. The "Rcpp-sugar" vignette gives an
overview of the feature.
Rcpp attributes provide a high-level syntax for declaring C++ functions
as callable from R and automatically generating the code
required to invoke them. Attributes are intended to facilitate
both interactive use of C++ within R sessions as well as to
support R package development. Attributes are built on top of
Rcpp modules and their implementation is based on previous work
in the inline package.
Many examples are included, and over 870 unit tests in over 390 unit
test functions provide additional usage examples.
An earlier version of Rcpp, containing what we now call the 'classic
Rcpp API' was written during 2005 and 2006 by Dominick Samperi.
This code has been factored out of Rcpp into the package
RcppClassic, and it is still available for code relying on the
older interface. New development should always use this Rcpp
package instead.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Douglas Bates, John Chambers and JJ Allaire
Maintainer: Dirk Eddelbuettel
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/DataFrame_generated.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/Date_forward.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/Datetime_forward.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/Generator.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/internal/posixt.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/internal/wrap_forward.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/module/macros.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/preprocessor |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/preprocessor.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/preprocessor_generated.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/routines.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/traits/Exporter.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/vector/CharacterVectorExtractionIterator.h |only
Rcpp-0.10.1/Rcpp/inst/include/Rcpp/vector/eval_methods.h |only
Rcpp-0.10.1/Rcpp/inst/unitTests/cpp/reg_tests_0_10_1.cpp |only
Rcpp-0.10.1/Rcpp/inst/unitTests/runit.reg_0_10_1.R |only
Rcpp-0.10.1/Rcpp/src/Attributes.cpp |only
Rcpp-0.10.1/Rcpp/src/AttributesParser.cpp |only
Rcpp-0.10.1/Rcpp/src/AttributesParser.h |only
Rcpp-0.10.1/Rcpp/src/DateVector.cpp |only
Rcpp-0.10.1/Rcpp/src/Datetime.cpp |only
Rcpp-0.10.1/Rcpp/src/DatetimeVector.cpp |only
Rcpp-0.10.1/Rcpp/src/Dimension.cpp |only
Rcpp-0.10.1/Rcpp/src/DottedPair.cpp |only
Rcpp-0.10.1/Rcpp/src/Environment.cpp |only
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Rcpp-0.10.1/Rcpp/src/coerce.cpp |only
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Rcpp-0.10.1/Rcpp/src/posixt.cpp |only
Rcpp-0.10.1/Rcpp/src/r_cast.cpp |only
Rcpp-0.10.2/Rcpp/ChangeLog | 265 ++
Rcpp-0.10.2/Rcpp/DESCRIPTION | 8
Rcpp-0.10.2/Rcpp/MD5 | 306 +-
Rcpp-0.10.2/Rcpp/R/Attributes.R | 177 +
Rcpp-0.10.2/Rcpp/R/RcppLdpath.R | 18
Rcpp-0.10.2/Rcpp/R/exceptions.R | 37
Rcpp-0.10.2/Rcpp/TODO | 18
Rcpp-0.10.2/Rcpp/inst/NEWS.Rd | 49
Rcpp-0.10.2/Rcpp/inst/THANKS | 1
Rcpp-0.10.2/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary
Rcpp-0.10.2/Rcpp/inst/doc/Rcpp-attributes.pdf |binary
Rcpp-0.10.2/Rcpp/inst/doc/Rcpp-attributes/Rcpp-attributes.Rnw | 160 -
Rcpp-0.10.2/Rcpp/inst/doc/Rcpp-extending.pdf |binary
Rcpp-0.10.2/Rcpp/inst/doc/Rcpp-introduction.pdf |binary
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Rcpp-0.10.2/Rcpp/inst/doc/Rcpp-package.pdf |binary
Rcpp-0.10.2/Rcpp/inst/doc/Rcpp-quickref.pdf |binary
Rcpp-0.10.2/Rcpp/inst/doc/Rcpp-sugar.pdf |binary
Rcpp-0.10.2/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary
Rcpp-0.10.2/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.html | 10
Rcpp-0.10.2/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.txt | 67
Rcpp-0.10.2/Rcpp/inst/doc/unitTests/Rcpp-unitTests.R | 1
Rcpp-0.10.2/Rcpp/inst/include/Rcpp.h | 5
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/Benchmark |only
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/DataFrame.h | 58
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/Datetime.h | 5
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/Dimension.h | 46
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/DottedPair.h | 90
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/Environment.h | 22
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/Evaluator.h | 6
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/Promise.h | 1
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/RObject.h | 61
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/Reference.h | 48
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/Rmath.h | 2
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/String.h |only
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/Symbol.h | 6
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/Vector.h | 12
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/api |only
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/as.h | 12
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/barrier.h | 1
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/cache.h | 6
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/clone.h | 7
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/complex.h | 2
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/config.h | 18
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/exceptions.h | 31
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/generated/DataFrame_generated.h |only
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/grow.h | 53
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/hash |only
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Rcpp-0.10.2/Rcpp/inst/include/Rcpp/internal/converter.h |only
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/internal/r_coerce.h | 20
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/internal/wrap.h | 5
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/iostream/Rostream.h | 34
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/iostream/Rstreambuf.h | 21
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/lang.h | 7
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Rcpp-0.10.2/Rcpp/inst/include/Rcpp/r_cast.h | 5
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/random.h | 76
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rbeta.h | 10
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rbinom.h | 11
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rcauchy.h | 44
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rchisq.h | 12
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rexp.h | 24
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rf.h | 29
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rgamma.h | 25
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rgeom.h | 13
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rhyper.h | 11
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rlnorm.h | 48
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rlogis.h | 45
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rnbinom.h | 15
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rnbinom_mu.h | 14
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rnchisq.h | 26
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rnorm.h | 67
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rpois.h | 11
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rsignrank.h | 11
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rt.h | 20
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/runif.h | 33
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rweibull.h | 26
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/stats/random/rwilcox.h | 11
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/sugar/functions/clamp.h | 4
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/sugar/functions/duplicated.h | 40
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/sugar/functions/functions.h | 2
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/sugar/functions/match.h | 64
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/sugar/functions/sapply.h | 12
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/sugar/functions/self_match.h | 3
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/sugar/functions/strings |only
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/sugar/functions/unique.h | 104 -
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/sugar/sets.h | 27
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/sugar/sugar.h | 4
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/traits/comparator_type.h | 2
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/traits/is_const.h | 2
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/traits/is_reference.h | 2
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/traits/r_type_traits.h | 2
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/traits/remove_const_and_reference.h | 5
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/traits/traits.h |only
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/traits/wrap_type_traits.h | 1
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/vector/00_forward_eval_methods.h | 8
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/vector/00_forward_proxy.h | 3
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/vector/LazyVector.h | 5
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/vector/Matrix.h | 207 --
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/vector/MatrixRow.h | 7
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/vector/Vector.h | 840 +-------
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/vector/converter.h | 10
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/vector/no_init.h |only
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/vector/proxy.h | 18
Rcpp-0.10.2/Rcpp/inst/include/Rcpp/vector/string_proxy.h | 7
Rcpp-0.10.2/Rcpp/inst/include/RcppCommon.h | 266 --
Rcpp-0.10.2/Rcpp/inst/unitTests/cpp/DataFrame.cpp |only
Rcpp-0.10.2/Rcpp/inst/unitTests/cpp/Environment.cpp |only
Rcpp-0.10.2/Rcpp/inst/unitTests/cpp/String.cpp |only
Rcpp-0.10.2/Rcpp/inst/unitTests/cpp/Vector.cpp |only
Rcpp-0.10.2/Rcpp/inst/unitTests/cpp/sugar.cpp | 38
Rcpp-0.10.2/Rcpp/inst/unitTests/runit.DataFrame.R | 115 -
Rcpp-0.10.2/Rcpp/inst/unitTests/runit.String.R |only
Rcpp-0.10.2/Rcpp/inst/unitTests/runit.Vector.R | 1033 +---------
Rcpp-0.10.2/Rcpp/inst/unitTests/runit.environments.R | 219 --
Rcpp-0.10.2/Rcpp/inst/unitTests/runit.macros.R | 17
Rcpp-0.10.2/Rcpp/inst/unitTests/runit.misc.R | 4
Rcpp-0.10.2/Rcpp/inst/unitTests/runit.sugar.R | 46
Rcpp-0.10.2/Rcpp/inst/unitTests/runit.wrap.R | 12
Rcpp-0.10.2/Rcpp/src/Date.cpp | 237 ++
Rcpp-0.10.2/Rcpp/src/Module.cpp | 103
Rcpp-0.10.2/Rcpp/src/Rcpp_init.c | 21
Rcpp-0.10.2/Rcpp/src/Timer.cpp |only
Rcpp-0.10.2/Rcpp/src/api.cpp |only
Rcpp-0.10.2/Rcpp/src/attributes.cpp |only
Rcpp-0.10.2/Rcpp/src/barrier.cpp | 125 +
Rcpp-0.10.2/Rcpp/src/exceptions.cpp | 191 -
Rcpp-0.10.2/Rcpp/src/internal.h |only
Rcpp-0.10.2/Rcpp/tests/doRUnit.R | 6
184 files changed, 2239 insertions(+), 3856 deletions(-)
Title: A package to estimate posterior probabilities and perform model
selection in change-point models using constrained HMM.
Diff between postCP versions 1.6.1 dated 2012-10-26 and 1.6.2 dated 2012-12-21
Description: The functions are used for change-point problems, after an
initial set of change-points within the data has already been
obtained. The function postCP obtains estimates of posterior
probabilities of change-point and hidden states for each
observation, and confidence intervals for the positions of the
change-point. The function postCPsample obtains random samples
of sets of change-points using the output of the postCP
function. Model selection may be performed using function
postCPmodelsel through criteria obtained from function
postCPcrit.
Author: Gregory Nuel and The Minh Luong
Maintainer: The Minh Luong
DESCRIPTION | 10 +++++-----
MD5 | 24 ++++++++++++------------
R/postCP.modelsel.r | 26 ++++++++++++++------------
man/GreedySegmente.Rd | 4 ++--
man/lesum.Rd | 4 ++--
man/mleNB.Rd | 6 +++---
man/plot.postCP.Rd | 4 ++--
man/postCP.Rd | 4 ++--
man/postCPcrit.Rd | 6 +++---
man/postCPmodelsel.Rd | 8 ++++----
man/postCPsample.Rd | 4 ++--
man/viterbi.Rd | 4 ++--
src/postCP.cpp | 21 +++++++++++++++++++--
13 files changed, 72 insertions(+), 53 deletions(-)
Title: Tools for reading and handling spatial objects
Diff between maptools versions 0.8-20 dated 2012-11-12 and 0.8-21 dated 2012-12-21
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Jonathan Callahan, German Carrillo, Stéphane Dray, David
Forrest, Michael Friendly, Patrick Giraudoux, Duncan Golicher,
Virgilio Gómez Rubio, Patrick Hausmann, Karl Ove Hufthammer,
Thomas Jagger, Sebastian P. Luque, Don MacQueen, Andrew
Niccolai, Oscar Perpiñán Lamigueiro, Tom Short, Greg Snow, Ben
Stabler and Rolf Turner
Maintainer: Roger Bivand
ChangeLog | 22 +++++++
DESCRIPTION | 9 +--
MD5 | 16 ++---
NAMESPACE | 2
R/dotsinpolys.R | 9 ++-
R/lineLabel.R | 155 +++++++++++++++++++++++++++++++++++++------------------
inst/ChangeLog | 22 +++++++
man/lineLabel.Rd | 92 ++++++++++++++++++++++----------
maptools-Ex.R | 28 +++++++--
9 files changed, 254 insertions(+), 101 deletions(-)
More information about tm.plugin.webmining at CRAN
Permanent link
Title: Spatial dependence: weighting schemes, statistics and models
Diff between spdep versions 0.5-53 dated 2012-11-09 and 0.5-55 dated 2012-12-21
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tessellations, for summarizing these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord
G and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 34 +++++++++++++++++++++++++
DESCRIPTION | 8 ++---
MD5 | 54 +++++++++++++++++++--------------------
NAMESPACE | 4 ++
R/eigenw.R | 57 +++++++++++++++++++++++++++++++++++++++++
R/error.hessian.R | 5 +--
R/error.spsarlm.R | 6 ++--
R/impacts.R | 72 ++++++++++++++++++++++++++++++++++++-----------------
R/jacobian.R | 17 ++++++++++++
R/jacobian_setup.R | 10 +++++--
R/lag.hessian.R | 5 +--
R/lag.spsarlm.R | 6 ++--
R/poly2nb.R | 9 ++++--
R/sacsarlm.R | 14 +++++-----
R/spautolm.R | 9 ++----
inst/ChangeLog | 34 +++++++++++++++++++++++++
inst/doc/CO69.pdf |binary
inst/doc/sids.pdf |binary
man/aple.Rd | 2 -
man/aple.mc.Rd | 2 -
man/aple.plot.Rd | 2 -
man/do_ldet.Rd | 21 +++++++++++++--
man/eigenw.Rd | 62 +++++++++++++++++++++++++++++++--------------
man/errorsarlm.Rd | 39 ++++++++++++++++------------
man/lagsarlm.Rd | 2 +
man/sacsarlm.Rd | 5 +--
man/spautolm.Rd | 11 ++++++++
spdep-Ex.R | 58 ++++++++++++++++++++++++++++++------------
28 files changed, 404 insertions(+), 144 deletions(-)
Title: Functions to facilitate power and sensitivity analyses for
genetic studies of natural populations
Diff between pedantics versions 1.03 dated 2012-03-27 and 1.04 dated 2012-12-21
Description: More to come
Author: Michael Morrissey
Maintainer: Michael Morrissey
DESCRIPTION | 10 ++++----
MD5 | 6 ++---
R/genomesim.R | 59 ++++++++++++++++++++++++++++++++++++++--------------
man/drawPedigree.Rd | 5 ----
4 files changed, 53 insertions(+), 27 deletions(-)
Title: Plot rpart models. An enhanced version of plot.rpart.
Diff between rpart.plot versions 1.4-2 dated 2012-12-16 and 1.4-3 dated 2012-12-21
Description: Plot rpart models. Extends plot.rpart and text.rpart in
the rpart package.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow
DESCRIPTION | 6 +++---
MD5 | 10 +++++-----
NEWS | 11 +++++++++--
R/node.labs.R | 3 ++-
inst/doc/prp.pdf |binary
src/tests/test.prp.Rout.save | 6 +++---
6 files changed, 22 insertions(+), 14 deletions(-)
Title: ORMDR
Diff between ORMDR versions 1.3-1 dated 2008-08-21 and 1.3-2 dated 2012-12-21
Description: Odds ratio based multifactor-dimensionality reduction
method for detecting gene-gene interactions
Author: Eun-Kyung Lee, Sung Gon Yi, Yoojin Jung, Junghyun Namkung,
Taesung Park
Maintainer: Junghyun Namkung
ORMDR-1.3-1/ORMDR/R/zzz.R |only
ORMDR-1.3-2/ORMDR/DESCRIPTION | 14 +++++++++-----
ORMDR-1.3-2/ORMDR/MD5 |only
ORMDR-1.3-2/ORMDR/NAMESPACE |only
ORMDR-1.3-2/ORMDR/R/mdr_revised.R | 8 +++++---
5 files changed, 14 insertions(+), 8 deletions(-)
Title: Post-normalization of total copy numbers
Diff between NSA versions 0.0.31 dated 2012-10-04 and 0.0.32 dated 2012-12-21
Description: Post-normalization of total copy-number estimates.
Author: Maria Ortiz-Estevez
Maintainer: Maria Ortiz-Estevez
DESCRIPTION | 14 ++++++--------
MD5 | 8 ++++----
R/SNPsNormalization.R | 5 ++++-
R/SampleNormalization.R | 5 ++++-
R/zzz.R | 3 ---
5 files changed, 18 insertions(+), 17 deletions(-)
Title: Robust Loss Development Using MCMC
Diff between lossDev versions 3.0.0-3 dated 2012-07-03 and 3.0.0-4 dated 2012-12-21
Description: Loss Development for Insurance Triangles
Author: Christopher W. Laws, Frank A. Schmid
Maintainer: Christopher W. Laws
lossDev-3.0.0-3/lossDev/man/calendarYearEffectAutoregressiveParameter-comma-AnnualAggLossDevModelOutput-dash-method.Rd |only
lossDev-3.0.0-4/lossDev/DESCRIPTION | 8 ++++----
lossDev-3.0.0-4/lossDev/MD5 | 8 ++++----
lossDev-3.0.0-4/lossDev/inst/doc/lossDev.pdf |binary
lossDev-3.0.0-4/lossDev/man/CY-AutoRegParameter-AnnAggLossDevModelOutput---method.Rd |only
lossDev-3.0.0-4/lossDev/src/Makevars | 4 ++--
6 files changed, 10 insertions(+), 10 deletions(-)
Title: The Multifactor Dimensionality Reduction (MDR) Analysis for
Incomplete Data
Diff between imputeMDR versions 1.1.1 dated 2011-07-07 and 1.1.2 dated 2012-12-21
Description: This package provides various approaches to handling
missing values for the MDR analysis to identify gene-gene
interactions using biallelic marker data in genetic association
studies
Author: Junghyun Namkung, Taeyoung Hwang, MinSeok Kwon, Sunggon Yi and
Wonil Chung
Maintainer: Junghyun Namkung
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
R/impute.mdr.R | 2 +-
man/impute.mdr.Rd | 9 +++------
man/imputeMDR-package.Rd | 2 --
man/incomplete.Rd | 6 ++----
7 files changed, 10 insertions(+), 17 deletions(-)
Title: Tools for using fonts
Diff between extrafont versions 0.12 dated 2012-11-01 and 0.13 dated 2012-12-21
Description: Tools to using fonts other than the standard PostScript
fonts. This package makes it easy to use system TrueType fonts
and with PDF or PostScript output files, and with bitmap output
files in Windows. extrafont can also be used with fonts
packaged specifically to be used with, such as the fontcm
package, which has Computer Modern PostScript fonts with math
symbols. See https://github.com/wch/extrafont for instructions
and examples.
Author: Winston Chang
Maintainer: Winston Chang
DESCRIPTION | 14 +++++++-------
MD5 | 15 +++++++++------
NAMESPACE | 3 +++
NEWS | 12 ++++++++++++
R/aaa.r |only
R/choosefont.r |only
R/fonttable.r | 3 ++-
R/load.r | 18 ++++++++++++++++++
README.md | 4 +++-
man/choose_font.Rd |only
10 files changed, 54 insertions(+), 15 deletions(-)
Title: Classification and Regression Training
Diff between caret versions 5.15-045 dated 2012-11-27 and 5.15-048 dated 2012-12-21
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn
caret-5.15-045/caret/inst/doc/caretMisc.Rnw |only
caret-5.15-045/caret/inst/doc/caretMisc.pdf |only
caret-5.15-045/caret/inst/doc/caretSelection.Rnw |only
caret-5.15-045/caret/inst/doc/caretSelection.pdf |only
caret-5.15-045/caret/inst/doc/caretTrain.Rnw |only
caret-5.15-045/caret/inst/doc/caretTrain.pdf |only
caret-5.15-045/caret/inst/doc/caretVarImp.Rnw |only
caret-5.15-045/caret/inst/doc/caretVarImp.pdf |only
caret-5.15-045/caret/vignettes/allPred.pdf |only
caret-5.15-045/caret/vignettes/caretMisc.Rnw |only
caret-5.15-045/caret/vignettes/caretSelection.Rnw |only
caret-5.15-045/caret/vignettes/caretTrain.Rnw |only
caret-5.15-045/caret/vignettes/caretVarImp.Rnw |only
caret-5.15-045/caret/vignettes/filteredPred.pdf |only
caret-5.15-045/caret/vignettes/min.pdf |only
caret-5.15-045/caret/vignettes/plsVarImp.pdf |only
caret-5.15-045/caret/vignettes/resamps.RData |only
caret-5.15-045/caret/vignettes/rocVarImp.pdf |only
caret-5.15-045/caret/vignettes/speedup.pdf |only
caret-5.15-048/caret/DESCRIPTION | 10 +-
caret-5.15-048/caret/MD5 | 60 +++++----------
caret-5.15-048/caret/NAMESPACE | 5 -
caret-5.15-048/caret/R/bagEarth.R | 18 ++--
caret-5.15-048/caret/R/bagFDA.R | 47 +++++++-----
caret-5.15-048/caret/R/createModel.R | 56 ++++++++------
caret-5.15-048/caret/R/modelLookup.R | 28 -------
caret-5.15-048/caret/R/resamples.R | 10 +-
caret-5.15-048/caret/R/train.default.R | 11 ++
caret-5.15-048/caret/R/workflows.R | 22 ++++-
caret-5.15-048/caret/inst/NEWS.Rd | 79 +++++++++++++--------
caret-5.15-048/caret/inst/doc/caret.Rnw |only
caret-5.15-048/caret/inst/doc/caret.pdf |only
caret-5.15-048/caret/man/calibration.Rd | 2
caret-5.15-048/caret/man/diff.resamples.Rd | 2
caret-5.15-048/caret/man/lattice.diff.resamples.Rd | 4 -
caret-5.15-048/caret/man/lattice.resamples.Rd | 8 +-
caret-5.15-048/caret/man/plsda.Rd | 2
caret-5.15-048/caret/man/prcomp.resamples.Rd | 2
caret-5.15-048/caret/man/predict.bagEarth.Rd | 1
caret-5.15-048/caret/man/resamples.Rd | 2
caret-5.15-048/caret/man/segmentationData.Rd | 2
caret-5.15-048/caret/vignettes/caret.Rnw |only
42 files changed, 196 insertions(+), 175 deletions(-)
Title: Back-Projected Kernel Density Estimation
Diff between bpkde versions 1.0 dated 2012-04-29 and 1.0-2 dated 2012-12-21
Description: Nonparametric multivariate kernel density \ estimation
using a back-projected kernel.
Author: Kjell Konis
Maintainer: Kjell Konis
bpkde-1.0-2/bpkde/DESCRIPTION | 15 ++++++++-------
bpkde-1.0-2/bpkde/MD5 | 14 ++++----------
bpkde-1.0-2/bpkde/R/bpkde.q | 4 ++--
bpkde-1.0-2/bpkde/R/mvlinbin.q | 2 +-
bpkde-1.0-2/bpkde/man/bpkde.Rd | 10 +++++++---
bpkde-1.0/bpkde/bpkde.xcodeproj |only
6 files changed, 22 insertions(+), 23 deletions(-)
Title: Algorithms for Quantitative Pedology
Diff between aqp versions 1.3 dated 2012-10-10 and 1.4 dated 2012-12-21
Description: A collection of algorithms related to modeling of soil
resources, soil classification, soil profile aggregation, and
visualization.
Author: Dylan Beaudette
Maintainer: Dylan Beaudette
DESCRIPTION | 12
MD5 | 53 +
NAMESPACE | 6
NEWS | 22
R/Class-SoilProfileCollection.R | 97 +--
R/SoilProfileCollection-coercion.R | 2
R/SoilProfileCollection-iterators.R | 39 -
R/SoilProfileCollection-methods.R | 1032 ++++++++++++++++++------------------
R/get.ml.hz.R |only
R/profile_compare.R | 801 ++++++++++++++-------------
R/profile_plot.R | 61 +-
R/random_profile.R | 4
R/sim.R |only
R/soil_slotting.R | 6
data/amarillo.rda |binary
data/ca630.rda |binary
data/munsell.rda |binary
data/rruff.sample.rda |binary
data/sp1.rda |binary
data/sp2.rda |binary
data/sp3.rda |binary
data/sp4.rda |binary
data/sp5.rda |binary
man/SPC-plotting.Rd | 7
man/SPC-slab-methods.Rd | 55 -
man/get.ml.hz.Rd |only
man/profileApply-methods.Rd | 6
man/profile_compare-methods.Rd | 3
man/sim.Rd |only
man/subsetProfiles-methods.Rd |only
30 files changed, 1140 insertions(+), 1066 deletions(-)