Title: The Trapezoidal Distribution
Diff between trapezoid versions 1.0-5 dated 2012-01-28 and 2.0-0 dated 2012-12-28
Description: The trapezoid package provides dtrapezoid, ptrapezoid,
qtrapezoid, and rtrapezoid functions for the trapezoidal
distribution.
Author: Jeremy Thoms Hetzel [aut, cre]
Maintainer: Jeremy Thoms Hetzel
ChangeLog | 1
DESCRIPTION | 8 ++--
MD5 | 23 +++++++------
NAMESPACE | 3 +
R/dtrapezoid.R | 62 ++++---------------------------------
R/ptrapezoid.R | 72 ++++++-------------------------------------
R/qtrapezoid.R | 79 +-----------------------------------------------
R/rtrapezoid.R | 7 +---
inst/doc/trapezoid.Rnw | 30 +++++++++---------
inst/doc/trapezoid.pdf |binary
man/trapezoid.Rd | 40 ++++++++++++------------
src |only
vignettes/trapezoid.Rnw | 30 +++++++++---------
13 files changed, 91 insertions(+), 264 deletions(-)
Title: Estimation, Diagnostic and Forecasting Functions for ARFIMA
models
Diff between afmtools versions 0.1.7 dated 2012-04-17 and 0.1.8 dated 2012-12-28
Description: A collection of estimation, forecasting and diagnostic
tools for autoregressive fractionally integrated moving-average
process (ARFIMA).
Author: Javier E. Contreras-Reyes, Georg M. Goerg, Wilfredo Palma
Maintainer: Javier E. Contreras-Reyes
DESCRIPTION | 8 ++++----
MD5 | 40 ++++++++++++++++++++--------------------
R/check.parameters.arfima.R | 3 ++-
man/MammothCreek.Rd | 4 ++--
man/TreeRing.Rd | 4 ++--
man/afmtools-package.Rd | 32 ++++++++++++++++----------------
man/arfima-methods.Rd | 6 ++++--
man/arfima.whittle.Rd | 6 ++++--
man/arfima.whittle.loglik.Rd | 10 ++++++----
man/check.parameters.arfima.Rd | 4 +++-
man/gw.test.Rd | 7 ++++---
man/ir.arfima.Rd | 2 +-
man/per.arfima.Rd | 2 +-
man/pi.j.Rd | 4 ++--
man/psi.j.Rd | 4 ++--
man/rho.arma.Rd | 2 +-
man/rho.sowell.Rd | 4 ++--
man/smv.afm.Rd | 4 +++-
man/spectrum.arfima.Rd | 2 +-
man/spectrum.arma.Rd | 4 ++--
man/var.afm.Rd | 4 ++--
21 files changed, 84 insertions(+), 72 deletions(-)
Title: Sensitivity Analysis
Diff between sensitivity versions 1.6 dated 2012-11-14 and 1.6-1 dated 2012-12-28
Description: A collection of functions for factor screening and global
sensitivity analysis of model output.
Author: Gilles Pujol, Bertrand Iooss, Alexandre Janon
Maintainer: Bertrand Iooss
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/morris_oat.R | 3 ++-
man/sensitivity-package.Rd | 21 ++++++++++-----------
4 files changed, 19 insertions(+), 19 deletions(-)
Title: Examples using Rcpp to interface R and C++
Diff between RcppExamples versions 0.1.4 dated 2012-08-10 and 0.1.5 dated 2012-12-28
Description: Examples for Seamless R and C++ integration The Rcpp
package contains a C++ library that facilitates the integration
of R and C++ in various ways. This package provides some usage
examples.
Note that the documentation in this package currently does not cover
all the features in the package. It is not even close.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel
RcppExamples-0.1.4/RcppExamples/NEWS |only
RcppExamples-0.1.4/RcppExamples/R/RcppExample.R |only
RcppExamples-0.1.4/RcppExamples/man/RcppExample.Rd |only
RcppExamples-0.1.4/RcppExamples/src/classicRcppDateExample.cpp |only
RcppExamples-0.1.4/RcppExamples/src/classicRcppExample.cpp |only
RcppExamples-0.1.4/RcppExamples/src/classicRcppMatrixExample.cpp |only
RcppExamples-0.1.4/RcppExamples/src/classicRcppParamsExample.cpp |only
RcppExamples-0.1.4/RcppExamples/src/classicRcppStringVectorExample.cpp |only
RcppExamples-0.1.4/RcppExamples/src/classicRcppVectorExample.cpp |only
RcppExamples-0.1.5/RcppExamples/ChangeLog | 26 ++++++
RcppExamples-0.1.5/RcppExamples/DESCRIPTION | 20 +----
RcppExamples-0.1.5/RcppExamples/MD5 | 38 +++-------
RcppExamples-0.1.5/RcppExamples/NAMESPACE | 5 -
RcppExamples-0.1.5/RcppExamples/NEWS.Rd |only
RcppExamples-0.1.5/RcppExamples/R/RcppDateExample.R | 13 ---
RcppExamples-0.1.5/RcppExamples/R/RcppMatrixExample.R | 14 ---
RcppExamples-0.1.5/RcppExamples/R/RcppParamsExample.R | 13 ---
RcppExamples-0.1.5/RcppExamples/R/RcppRNGs.R | 2
RcppExamples-0.1.5/RcppExamples/R/RcppStringVectorExample.R | 14 ---
RcppExamples-0.1.5/RcppExamples/R/RcppVectorExample.R | 12 ---
RcppExamples-0.1.5/RcppExamples/man/RcppExamples-package.Rd | 14 ++-
RcppExamples-0.1.5/RcppExamples/src/Makevars | 2
RcppExamples-0.1.5/RcppExamples/src/Makevars.win | 1
RcppExamples-0.1.5/RcppExamples/src/newRcppMatrixExample.cpp | 4 -
RcppExamples-0.1.5/RcppExamples/src/newRcppVectorExample.cpp | 4 -
25 files changed, 79 insertions(+), 103 deletions(-)
Title: iRefIndex Manager
Diff between iRefR versions 0.97 dated 2012-08-10 and 1.00 dated 2012-12-28
Description: "iRefR" allows the user to load any version of the
consolidated protein interaction database "iRefIndex" and
perform tasks such as: selecting databases, pmids, experimental
methods, searching for specific proteins, separate binary
interactions from complexes and polymers, generate complexes
according to an algorithm that looks after possible
binary-represented complexes, make general database statistics
and create network graphs, among others.
Author: Antonio Mora
Maintainer: Antonio Mora
DESCRIPTION | 14 +-
MD5 | 16 +--
R/convert_MITAB_to_edgeList.R | 188 ++++++++++++++++++++++-----------------
R/convert_edgeList_to_graph.R | 12 --
R/summary_protein.R | 88 +++++++++---------
inst/NEWS | 35 +++++++
man/convert_MITAB_to_edgeList.Rd | 35 ++++++-
man/convert_edgeList_to_graph.Rd | 45 +++++----
man/convert_protein_ID.Rd | 4
9 files changed, 269 insertions(+), 168 deletions(-)
Title: Factor Analysis in R
Diff between FAiR versions 0.4-11 dated 2012-09-21 and 0.4-12 dated 2012-12-28
Description: This package estimates factor analysis models using a
genetic algorithm, which permits a general mechanism for
restricted optimization with arbitrary restrictions that are
chosen at run time with the help of a GUI. Importantly,
inequality restrictions can be imposed on functions of multiple
parameters, which provides a new avenues for testing and
generating theories with factor analysis models. This package
also includes an entirely new estimator of the common factor
analysis model called semi-exploratory factor analysis, which
is a general alternative to exploratory and confirmatory factor
analysis. Finally, this package integrates a lot of other
packages that estimate sample covariance matrices and thus
provides a lot of alternatives to the traditional sample
covariance calculation. Note that you need to have the Gtk run
time library installed on your system to use this package; see
the URL below for detailed installation instructions. Most
users would only need to understand the first twenty-four pages
of the PDF manual.
Author: Ben Goodrich
Maintainer: Ben Goodrich
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/zzz.R | 6 ------
src/ADF.c | 14 ++++++++------
4 files changed, 15 insertions(+), 19 deletions(-)
Title: Side Channel Attack
Diff between sideChannelAttack versions 1.0-4 dated 2012-10-17 and 1.0-5 dated 2012-12-28
More information about sideChannelAttack at CRAN
Description: This package has many purposes: first, it gives to the
community an R implementation of each known side channel attack
and countermeasures as well as data to test it, second it
allows to implement a side channel attack quickly and easily.
Author: Liran Lerman
Maintainer: Liran Lerman
DESCRIPTION | 8 -
MD5 | 45 ++++---
NAMESPACE | 3
R/dpa.default.R | 6 -
R/filter.R | 5
R/filter.default.R | 12 +-
R/gaussian.default.R | 17 +--
R/predict.filter.R | 220 +++++++++++++++++++++------------------
R/predict.gaussian.R | 15 ++
R/verify.R | 6 -
R/verify.default.R | 29 +++--
data/powerC.rda |binary
man/dpa1.Rd | 2
man/filter.MAX.Rd |only
man/filter.PCA.Rd | 1
man/gaussian.Rd | 2
man/plot.verify.cv.Rd | 2
man/plot.verify.ho.Rd | 2
man/plot.verify.loo.Rd | 2
man/powerC.Rd | 2
man/sideChannelAttack-package.Rd | 2
man/verify.cv.Rd | 12 +-
man/verify.ho.Rd | 10 +
man/verify.loo.Rd | 8 -
24 files changed, 244 insertions(+), 167 deletions(-)
Permanent link
Title: A package for estimating age-specific survival from incomplete
capture-recapture/recovery data
Diff between BaSTA versions 1.6 dated 2012-11-19 and 1.7 dated 2012-12-28
Description: This package estimates survival and mortality with
covariates from capture-recapture/recovery data in a Bayesian
framework when many individuals are of unknown age. It includes
tools for data checking, model diagnostics and outputs such as
life-tables and plots.
Author: Fernando Colchero, Owen Jones, Maren Rebke
Maintainer: Fernando Colchero
DESCRIPTION | 8 -
MD5 | 8 -
R/basta.R | 231 ++++++++++++++++++++++++++++-----------------------
R/basta.default.R | 58 ++++++------
man/BaSTA-package.Rd | 4
5 files changed, 170 insertions(+), 139 deletions(-)
Title: Trust region nonlinear optimization, efficient for sparse
Hessians
Diff between trustOptim versions 0.7.1 dated 2012-09-27 and 0.8.0 dated 2012-12-28
Description: Trust region algorithm for nonlinear optimization. In
addition to being more stable and robust than optim, this
package includes methods that are scalable and efficient (in
terms of both speed and memory usage) when the Hessian is
sparse.
Author: Michael Braun
Maintainer: Michael Braun
trustOptim-0.7.1/trustOptim/LICENSE |only
trustOptim-0.7.1/trustOptim/R/get_fdfh.R |only
trustOptim-0.7.1/trustOptim/R/matrices.R |only
trustOptim-0.7.1/trustOptim/inst/examples/compare.R |only
trustOptim-0.7.1/trustOptim/inst/examples/summarize.R |only
trustOptim-0.7.1/trustOptim/inst/misc |only
trustOptim-0.7.1/trustOptim/man/Coord.to.Pattern.Matrix.Rd |only
trustOptim-0.7.1/trustOptim/man/Coord.to.Sym.Pattern.Matrix.Rd |only
trustOptim-0.7.1/trustOptim/man/Matrix.to.Coord.Rd |only
trustOptim-0.7.1/trustOptim/man/Sym.CSC.to.Matrix.Rd |only
trustOptim-0.7.1/trustOptim/man/get.fdfh.Rd |only
trustOptim-0.7.1/trustOptim/src/FDHS-DSSM.c |only
trustOptim-0.8.0/trustOptim/DESCRIPTION | 11
trustOptim-0.8.0/trustOptim/MD5 | 49 -
trustOptim-0.8.0/trustOptim/NEWS | 18
trustOptim-0.8.0/trustOptim/R/callTrust.R | 50 -
trustOptim-0.8.0/trustOptim/inst/doc/trustOptim-vignette.pdf |binary
trustOptim-0.8.0/trustOptim/inst/examples/ex1.R | 42 -
trustOptim-0.8.0/trustOptim/inst/examples/ex2.R |only
trustOptim-0.8.0/trustOptim/inst/examples/ex_funcs.R | 24
trustOptim-0.8.0/trustOptim/inst/include/CG-base.h | 24
trustOptim-0.8.0/trustOptim/inst/include/CG-quasi.h | 61 -
trustOptim-0.8.0/trustOptim/inst/include/CG-sparse.h | 57 -
trustOptim-0.8.0/trustOptim/inst/include/Rfunc.cpp | 323 ----------
trustOptim-0.8.0/trustOptim/inst/include/RfuncHess.cpp | 1
trustOptim-0.8.0/trustOptim/inst/include/common_R.hpp | 1
trustOptim-0.8.0/trustOptim/inst/include/defines_optim.hpp | 3
trustOptim-0.8.0/trustOptim/inst/include/exceptions.hpp | 1
trustOptim-0.8.0/trustOptim/inst/include/include_eigen.hpp | 1
trustOptim-0.8.0/trustOptim/man/trust.optim.Rd | 46 -
trustOptim-0.8.0/trustOptim/man/trustOptim-package.Rd | 25
trustOptim-0.8.0/trustOptim/src/Rinterface.cpp | 236 -------
32 files changed, 174 insertions(+), 799 deletions(-)
Title: Graphical Interaction Models
Diff between gRim versions 0.1-14 dated 2012-10-07 and 0.1-15 dated 2012-12-28
Description: gRaphical Interaction Models:
Models for for contingency tables (i.e. log-linear models)
Graphical Gaussian models for multivariate normal data (i.e. covariance
selection models)
Mixed interaction models
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
gRim-0.1-14/gRim/src/spdinv-arma.cpp |only
gRim-0.1-15/gRim/ChangeLog | 6 +
gRim-0.1-15/gRim/DESCRIPTION | 12 +--
gRim-0.1-15/gRim/MD5 | 21 ++---
gRim-0.1-15/gRim/R/MI-fit.R | 2
gRim-0.1-15/gRim/R/MI-utilities.R | 11 --
gRim-0.1-15/gRim/R/MI-xxx2yyyParms.R | 26 +++---
gRim-0.1-15/gRim/R/ciTest_ordinal.R | 128 ++++++++++++++++++++-------------
gRim-0.1-15/gRim/gRim-Ex.R | 22 ++++-
gRim-0.1-15/gRim/inst/doc/gRim.pdf |binary
gRim-0.1-15/gRim/man/ciTest_ordinal.Rd | 29 +++++--
gRim-0.1-15/gRim/src/xxx2yyyParms.cpp | 1
12 files changed, 151 insertions(+), 107 deletions(-)
Title: Graphical Independence Networks
Diff between gRain versions 1.0-3 dated 2012-08-28 and 1.1-0 dated 2012-12-28
Description: A package for probability propagation in graphical
independence networks, also known as probabilistic expert
systems or Bayesian networks.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
gRain-1.0-3/gRain/R/compile-CPT.R |only
gRain-1.0-3/gRain/R/compile-grain.R |only
gRain-1.0-3/gRain/R/extract-CPT.R |only
gRain-1.0-3/gRain/R/utilities.R |only
gRain-1.1-0/gRain/ChangeLog | 13
gRain-1.1-0/gRain/DESCRIPTION | 10
gRain-1.1-0/gRain/MD5 | 31 -
gRain-1.1-0/gRain/R/CPT-POT-compile.R |only
gRain-1.1-0/gRain/R/CPT-POT-extract.R |only
gRain-1.1-0/gRain/R/gRain-utilities.R |only
gRain-1.1-0/gRain/R/grain-compile.R |only
gRain-1.1-0/gRain/R/grain-main.R | 54 +-
gRain-1.1-0/gRain/R/infoPrint.R | 3
gRain-1.1-0/gRain/R/potentialList.R | 19 +
gRain-1.1-0/gRain/R/propagate.R | 16
gRain-1.1-0/gRain/R/querygrain.R | 23 -
gRain-1.1-0/gRain/R/random_cpt.R |only
gRain-1.1-0/gRain/R/simulate-grain.R | 32 +
gRain-1.1-0/gRain/gRain-Ex.R | 583 +++++++++++++++++---------------
gRain-1.1-0/gRain/man/extractCPT.Rd | 63 ++-
gRain-1.1-0/gRain/man/internal-gRain.Rd | 6
21 files changed, 516 insertions(+), 337 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-30 2.0-1
2011-06-03 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-11-27 1.2
2012-10-15 1.1
2012-08-22 1.0