Sun, 30 Dec 2012

Package RcppClassicExamples updated to version 0.1.1 with previous version 0.1.0 dated 2012-12-29

Title: Examples using RcppClassic to interface R and C++
Description: The Rcpp package contains a C++ library that facilitates the integration of R and C++ in various ways via a rich API. This API was preceded by an earlier version which has been deprecated since 2010 (but is still supported to provide backwards compatability in the package RcppClassic). This package RcppClassicExamples provides usage examples for the older, deprecated API. There is also a corresponding package RcppExamples package with examples for the newer, current API which we strongly recommend as the basis for all new development.
Author: Dirk Eddelbuettel and Romain Francois, based on code written during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel

Diff between RcppClassicExamples versions 0.1.0 dated 2012-12-29 and 0.1.1 dated 2012-12-30

 ChangeLog   |    9 +++++++++
 DESCRIPTION |   26 +++++++++++++++-----------
 MD5         |    5 +++--
 inst        |only
 4 files changed, 27 insertions(+), 13 deletions(-)

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Package IPMpack updated to version 1.6 with previous version 1.5 dated 2012-09-06

Title: Builds and analyses Integral Projection Models (IPMs).
Description: IPMpack takes demographic vital rates and (optionally) environmental data to build integral projection models. A number of functional forms for growth and survival can be incorporated, as well as a range of reproductive strategies. The package also includes a suite of diagnostic routines, provides classic matrix model output (e.g., lambda, elasticities, sensitivities), and produces post-hoc metrics (e.g., passage time and life expectancy).
Author: CJE Metcalf, SM McMahon, R Salguero-Gomez, E Jongejans
Maintainer: Sean McMahon

Diff between IPMpack versions 1.5 dated 2012-09-06 and 1.6 dated 2012-12-30

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 IPMpack-1.6/IPMpack/DESCRIPTION                     |    8 
 IPMpack-1.6/IPMpack/MD5                             |   48 ++---
 IPMpack-1.6/IPMpack/R/IPMpack-Base.r                |   84 ++++------
 IPMpack-1.6/IPMpack/R/IPMpack-Impl.r                |   78 ++++++++-
 IPMpack-1.6/IPMpack/R/IPMpack-Util.r                |  165 ++++++++++++++------
 IPMpack-1.6/IPMpack/data/cryptaDataCovSubset.csv.gz |binary
 IPMpack-1.6/IPMpack/inst/doc/IPMpack_Vignette.Rnw   |    6 
 IPMpack-1.6/IPMpack/inst/doc/IPMpack_Vignette.pdf   |binary
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 IPMpack-1.6/IPMpack/man/createCompoundFmatrix.Rd    |    4 
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 IPMpack-1.6/IPMpack/man/createIPMCmatrix.Rd         |    2 
 IPMpack-1.6/IPMpack/man/createIPMFmatrix.Rd         |    2 
 IPMpack-1.6/IPMpack/man/createIntegerFmatrix.Rd     |  106 ++++++------
 IPMpack-1.6/IPMpack/man/cryptaDataCovSubset.csv.Rd  |    2 
 IPMpack-1.6/IPMpack/man/diagnosticsPmatrix.Rd       |    2 
 IPMpack-1.6/IPMpack/man/makeDiscreteTrans.Rd        |    2 
 IPMpack-1.6/IPMpack/man/makeDiscreteTransInteger.Rd |    4 
 IPMpack-1.6/IPMpack/man/makeFecObjInteger.Rd        |   62 +++----
 IPMpack-1.6/IPMpack/man/makeGrowthObj.Rd            |    5 
 IPMpack-1.6/IPMpack/man/makeListPmatrix.Rd          |   47 ++---
 IPMpack-1.6/IPMpack/man/runSimpleModel.Rd           |    6 
 IPMpack-1.6/IPMpack/man/simulateCarlina.Rd          |   21 +-
 IPMpack-1.6/IPMpack/vignettes/IPMpack_Vignette.Rnw  |    6 
 26 files changed, 444 insertions(+), 266 deletions(-)

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Package Rjms updated to version 0.0.4 with previous version 0.0.3 dated 2012-05-23

Title: R messaging using Apache ActiveMQ and jms
Description: This package uses rJava to publish messages to an Apache ActiveMQ queue or topic, implementing enterprise integration patterns.
Author: SMS Chauhan , Zubin Dowlaty
Maintainer: SMS Chauhan

Diff between Rjms versions 0.0.3 dated 2012-05-23 and 0.0.4 dated 2012-12-30

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 Rjms-0.0.4/Rjms/R/Rjms.R                   |  122 +++++++++++----------
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 Rjms-0.0.4/Rjms/man/consume.Rd             |  128 +++++++++++-----------
 Rjms-0.0.4/Rjms/man/destroy.consumer.Rd    |  102 ++++++++---------
 Rjms-0.0.4/Rjms/man/destroy.logger.Rd      |   88 +++++++--------
 Rjms-0.0.4/Rjms/man/initialize.consumer.Rd |  104 ++++++++---------
 Rjms-0.0.4/Rjms/man/initialize.logger.Rd   |  102 ++++++++---------
 Rjms-0.0.4/Rjms/man/listen.Rd              |  168 ++++++++++++++---------------
 Rjms-0.0.4/Rjms/man/to.logger.Rd           |  117 ++++++++++----------
 14 files changed, 573 insertions(+), 557 deletions(-)

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New package MCPerm with initial version 1.1.2
Package: MCPerm
Type: Package
Title: A Monte Carlo permutation method for multiple test correlation in case-control association study
Version: 1.1.2
Date: 2012-12-30
Author: Lanying Zhang and Yongshuai Jiang
Maintainer: Yongshuai Jiang
Description: A Monte Carlo permutation method for multiple test correlation in case-control association study
License: GPL-2
Suggests: stats
Packaged: 2012-12-30 03:08:23 UTC; Alexander
Repository: CRAN
Date/Publication: 2012-12-30 14:28:08

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Package stellaR updated to version 0.3-1 with previous version 0.2-0 dated 2012-05-03

Title: stellar evolution tracks and isochrones
Description: A package to manage and display stellar tracks and isochrones from Pisa low-mass database. Includes tools for isochrones construction and tracks interpolation.
Author: Matteo Dell'Omodarme [aut, cre], Giada Valle [aut]
Maintainer: Matteo Dell'Omodarme

Diff between stellaR versions 0.2-0 dated 2012-05-03 and 0.3-1 dated 2012-12-30

 DESCRIPTION           |    9 +-
 MD5                   |   18 +++--
 R/ip.R                |   55 +++++++++--------
 R/stellar.R           |  153 +++++++++++++++++++++++++++++++-------------------
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 man/getTrkSet.Rd      |    6 -
 man/interpTrk.Rd      |    4 -
 man/makeIso.Rd        |    2 
 11 files changed, 160 insertions(+), 102 deletions(-)

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Package opefimor updated to version 1.1 with previous version 1.0 dated 2011-06-15

Title: Option Pricing and Estimation of Financial Models in R
Description: Companion package to the book Option Pricing and Estimation of Financial Models in R, Wiley, Chichester. ISBN: 978-0-470-74584-7
Author: Stefano Maria Iacus
Maintainer: Stefano Maria Iacus

Diff between opefimor versions 1.0 dated 2011-06-15 and 1.1 dated 2012-12-30

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 opefimor-1.1/opefimor/vignettes             |only
 6 files changed, 14 insertions(+), 11 deletions(-)

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Package SPSL updated to version 0.1-8 with previous version 0.1-7 dated 2012-12-27

Title: Site Percolation on Square Lattice (SPSL)
Description: SPSL package provides functionality for labeling of percolation clusters on 2D & 3D square lattice with various lattice size, relative fraction of accessible sites (occupation probability), iso- & anisotropy, von Neumann & Moore (1,d)-neighborhood
Author: Pavel V. Moskalev
Maintainer: Pavel V. Moskalev

Diff between SPSL versions 0.1-7 dated 2012-12-27 and 0.1-8 dated 2012-12-30

 ChangeLog           |   12 ++++++++++++
 DESCRIPTION         |    8 ++++----
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 R/ssa20.R           |   31 ++++++++++++-------------------
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 man/SPSL-package.Rd |    4 ++--
 8 files changed, 67 insertions(+), 83 deletions(-)

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Package oem updated to version 1.02 with previous version 1.01 dated 2012-09-09

Title: Orthogonalizing Expectation maximization
Description: Fit penalized regression with orthogonalizing EM algorithm
Author: Bin Dai
Maintainer: Bin Dai

Diff between oem versions 1.01 dated 2012-09-09 and 1.02 dated 2012-12-30

 DESCRIPTION         |   10 +++++-----
 MD5                 |   11 ++++++-----
 data/calHousing.rda |binary
 data/example9.rda   |binary
 src/Makevars        |   25 +------------------------
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 src/oem.h           |    3 ++-
 7 files changed, 14 insertions(+), 35 deletions(-)

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Package MVB updated to version 1.1 with previous version 1.0 dated 2012-07-18

Title: Mutivariate Bernoulli log-linear model
Description: Fit log-linear model for multivariate Bernoulli distribution with mixed effect models and LASSO
Author: Bin Dai
Maintainer: Bin Dai

Diff between MVB versions 1.0 dated 2012-07-18 and 1.1 dated 2012-12-30

 DESCRIPTION           |    8 ++++----
 MD5                   |   16 ++++++++--------
 R/mvb.R               |    2 +-
 man/MVB-package.Rd    |    2 +-
 src/debug.h           |    2 +-
 src/distriFactory.cpp |    2 +-
 src/gme.h             |    2 +-
 src/lps.h             |    2 +-
 src/mvbfit.h          |    2 +-
 9 files changed, 19 insertions(+), 19 deletions(-)

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Package HH updated to version 2.3-27 with previous version 2.3-23 dated 2012-11-22

Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (Springer, ISBN 0-387-40270-5). This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The authors demonstrate how to analyze data---showing code, graphics, and accompanying computer listings---for all the methods they cover. They emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises.
Author: Richard M. Heiberger
Maintainer: Richard M. Heiberger

Diff between HH versions 2.3-23 dated 2012-11-22 and 2.3-27 dated 2012-12-30

 DESCRIPTION                     |    8 -
 MD5                             |   28 ++--
 NAMESPACE                       |    6 
 R/ae.dotplot7.R                 |   18 ++
 R/aov.sufficient.R              |   17 +-
 R/as.likert.R                   |   31 +++-
 R/as.matrix.listOfMatrices.R    |   20 +-
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 data/PoorChildren.rda           |binary
 demo/00Index                    |    3 
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 man/as.matrix.listOfMatrices.Rd |   28 +++-
 man/likert.Rd                   |   15 +-
 16 files changed, 353 insertions(+), 130 deletions(-)

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