Title: LaTeX code for well-formatted regression and summary statistics
tables
Description: Produces LaTeX code for well-formatted tables that hold
regression analysis results from several models side-by-side,
as well as summary statistics.
Author: Marek Hlavac
Maintainer: Marek Hlavac
Diff between stargazer versions 3.0 dated 2013-01-26 and 3.0.1 dated 2013-01-30
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/stargazer-internal.R | 17 +++++++++++------ inst/CITATION | 24 ++++++++++++------------ inst/ChangeLog | 8 +++++++- inst/doc/stargazer.Rtex | 2 +- inst/doc/stargazer.pdf |binary man/stargazer.Rd | 2 +- man/stargazer_acknowledge.Rd | 2 ++ man/stargazer_news.Rd | 6 ++++++ vignettes/stargazer.Rtex | 2 +- 11 files changed, 55 insertions(+), 36 deletions(-)
Title: Random General Linear Model Prediction
Description: The package implements a bagging predictor based on
general linear models
Author: Lin Song, Peter Langfelder
Maintainer: Peter Langfelder
Diff between randomGLM versions 1.00-1 dated 2013-01-14 and 1.02-1 dated 2013-01-30
Changelog | 30 +++++++++++ DESCRIPTION | 10 +-- MD5 | 10 +-- NAMESPACE | 1 R/randomGLM.R | 138 ++++++++++++++++++++++++++++++++++++++++++------------- man/randomGLM.Rd | 51 ++++++++++++++++++-- 6 files changed, 193 insertions(+), 47 deletions(-)
Title: Fitting finite mixture of scale mixture of skew-normal
distributions .
Description: Functions to fit finite mixture of scale mixture of
skew-normal (FM-SMSN) distributions.
Author: Marcos Prates
Maintainer: Marcos Prates
Diff between mixsmsn versions 1.0-4 dated 2013-01-23 and 1.0-5 dated 2013-01-30
ChangeLog | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NAMESPACE | 1 + R/mix.dens.R | 44 ++++++++++++++++++++++++++++++++++++++++++++ man/mix.dens.Rd | 2 +- man/mix.lines.Rd |only man/smsn.mix.Rd | 7 +++++++ 8 files changed, 67 insertions(+), 10 deletions(-)
Title: Statistical Estimation of Game-Theoretic Models
Description: Provides estimation and analysis functions for strategic
statistical models.
Author: Curtis S. Signorino and Brenton Kenkel
Maintainer: Brenton Kenkel
Diff between games versions 1.0-5 dated 2012-03-05 and 1.1-0 dated 2013-01-30
DESCRIPTION | 12 ++++----- MD5 | 26 ++++++++++---------- NEWS | 9 +++++++ R/games.r | 28 +++++++++++++--------- R/predProbs.r | 2 - R/profile.r | 5 ++- R/ultimatum.r | 66 ++++++++++++++++++++++++++++++++++------------------ man/egame12.Rd | 18 +++++++------- man/egame122.Rd | 18 +++++++------- man/egame123.Rd | 28 +++++++++++----------- man/makeFormulas.Rd | 11 ++++---- man/predProbs.Rd | 4 +-- man/predict.game.Rd | 22 +++++++++++++---- man/ultimatum.Rd | 38 ++++++++++++++++------------- 14 files changed, 171 insertions(+), 116 deletions(-)
Title: Structural Equation Models
Description: This package contains functions for fitting general linear
structural equation models (with observed and unobserved
variables) using the RAM approach, and for fitting structural
equations in observed-variable models by two-stage least
squares.
Author: John Fox [aut, cre], Zhenghua Nie [aut], Jarrett Byrnes [aut],
Michael Culbertson [ctb], Saikat DebRoy [ctb], Michael Friendly
[ctb], Richard H. Jones [ctb], Adam Kramer [ctb], Georges
Monette [ctb], R-Core [ctb]
Maintainer: John Fox
Diff between sem versions 3.1-0 dated 2013-01-17 and 3.1-1 dated 2013-01-30
DESCRIPTION | 12 ++++++------ MD5 | 13 +++++++------ NEWS | 6 ++++++ R/csem.R | 19 ++++++++++++++++++- R/startvalues.R | 4 ++-- src/csem.cpp | 27 ++++++++++++++++++++++++++- src/uncmin.c | 13 ++++++++----- src/utils.h |only 8 files changed, 73 insertions(+), 21 deletions(-)
Title: Fast simulation of reconstructed phylogenetic trees under
time-dependent birth-death processes
Description: TESS is a package for simulation of reconstructed
phylogenetic trees under global, time-dependent birth-death
processes. Speciation and extinction rates can be any function
of time and mass-extinction events at specific times can be
provided. Trees can be simulated either conditioned on the
number of species, the time of the process, or both.
Additionally, the likelihood equations are implemented for
convenience and can be used for Maximum Likelihood (ML)
estimation and Bayesian inference.
Author: Sebastian Hoehna
Maintainer: Sebastian Hoehna
Diff between TESS versions 1.0.0 dated 2012-10-10 and 1.1.0 dated 2013-01-30
TESS-1.0.0/TESS/R/tess.integrate.R |only TESS-1.1.0/TESS/DESCRIPTION | 10 TESS-1.1.0/TESS/MD5 | 39 + TESS-1.1.0/TESS/NAMESPACE | 4 TESS-1.1.0/TESS/NEWS |only TESS-1.1.0/TESS/R/globalBiDe.equations.R | 459 +++++++------------ TESS-1.1.0/TESS/R/globalBiDe.likelihood.R | 153 ++++-- TESS-1.1.0/TESS/R/sim.globalBiDe.age.R | 318 +++++-------- TESS-1.1.0/TESS/R/sim.globalBiDe.taxa.R | 300 ++++-------- TESS-1.1.0/TESS/R/sim.globalBiDe.taxa.age.R | 466 +++++--------------- TESS-1.1.0/TESS/R/tess.PathSampling.R |only TESS-1.1.0/TESS/R/tess.PosteriorPrediction.R |only TESS-1.1.0/TESS/R/tess.PosteriorPredictiveTest.R |only TESS-1.1.0/TESS/R/tess.SteppingStoneSampling.R |only TESS-1.1.0/TESS/R/tess.mcmc.R |only TESS-1.1.0/TESS/R/tess.utilities.R | 237 +++++++--- TESS-1.1.0/TESS/data |only TESS-1.1.0/TESS/man/TESS-package.Rd | 4 TESS-1.1.0/TESS/man/cettiidae.Rd |only TESS-1.1.0/TESS/man/globalBiDe.likelihood.Rd | 24 - TESS-1.1.0/TESS/man/sim.globalBiDe.age.Rd | 19 TESS-1.1.0/TESS/man/sim.globalBiDe.taxa.Rd | 18 TESS-1.1.0/TESS/man/sim.globalBiDe.taxa.age.Rd | 17 TESS-1.1.0/TESS/man/tess.PosteriorPrediction.Rd |only TESS-1.1.0/TESS/man/tess.PosteriorPredictiveTest.Rd |only TESS-1.1.0/TESS/man/tess.mcmc.Rd |only TESS-1.1.0/TESS/man/tess.steppingStoneSampling.Rd |only 27 files changed, 869 insertions(+), 1199 deletions(-)
Title: Analysis of evolutionary rates in an OU framework
Description: Calculates and compares rate differences of continuous
character evolution under Brownian motion and a new set of
Ornstein-Uhlenbeck-based Hansen models that allow the strength
of selection and stochastic motion to vary across selective
regimes.
Author: Jeremy M. Beaulieu
Maintainer: Jeremy M. Beaulieu
Diff between OUwie versions 1.31 dated 2012-11-26 and 1.32 dated 2013-01-30
DESCRIPTION | 8 +- MD5 | 16 ++--- R/OUwie.R | 151 ++++++++++++++++++++++++++++++++++++++------------- R/OUwie.contour.R | 2 R/OUwie.fixed.R | 29 ++++++--- man/OUwie.Rd | 9 +-- man/OUwie.contour.Rd | 11 ++- man/OUwie.fixed.Rd | 9 ++- man/OUwie.sim.Rd | 3 - 9 files changed, 169 insertions(+), 69 deletions(-)
Title: Modelling and estimation of the yield curve
Description: Modelling the yield curve with some parametric models.
The models implemented are: Nelson-Siegel, Diebold-Li and
Svensson. The package also includes the data of the term
structure of interest rate of Federal Reserve Bank and European
Central Bank.
Author: Sergio Salvino Guirreri
Maintainer: Sergio Salvino Guirreri
Diff between YieldCurve versions 4.0 dated 2012-12-04 and 4.1 dated 2013-01-30
DESCRIPTION | 12 ++++----- MD5 | 28 ++++++++++----------- R/NSrates.R | 13 ++++----- R/Srates.R | 6 ++-- R/Svensson.R | 4 +-- R/beta.R | 12 ++++----- data/ECBYieldCurve.rda |binary data/FedYieldCurve.rda |binary man/ECBYieldCurve.Rd | 60 +++++++++++----------------------------------- man/FedYieldCurve.Rd | 30 ++++++++++++++++------- man/NSrates.Rd | 4 +-- man/Nelson.Siegel.Rd | 4 +-- man/Srates.Rd | 7 +++-- man/Svensson.Rd | 2 - man/YieldCurve-package.Rd | 8 +++--- 15 files changed, 87 insertions(+), 103 deletions(-)
Title: Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means.
Author: Dennis Walvoort [aut, cre, cph], Dick Brus [aut, cph], Jaap de
Gruijter [aut, cph]
Maintainer: Dennis Walvoort
Diff between spcosa versions 0.3-2 dated 2012-12-05 and 0.3-3 dated 2013-01-30
DESCRIPTION | 13 +++++++------ MD5 | 13 +++++++------ R/onAttach.R |only R/onLoad.R | 3 --- build/spcosa.pdf |binary inst/NEWS.Rd | 8 ++++++++ inst/doc/spcosa.pdf |binary tests/unitTesting.html | 6 +++--- 8 files changed, 25 insertions(+), 18 deletions(-)
Title: Modelling Spatial Extremes
Description: This package proposes several approaches for spatial
extremes modelling.
Author: Mathieu Ribatet, Richard Singleton, R Core team
Maintainer: Mathieu Ribatet
Diff between SpatialExtremes versions 1.9-0 dated 2012-11-06 and 1.9-1 dated 2013-01-30
SpatialExtremes-1.9-0/SpatialExtremes/R/zzz.R |only SpatialExtremes-1.9-1/SpatialExtremes/Copyright |only SpatialExtremes-1.9-1/SpatialExtremes/DESCRIPTION | 15 +++------ SpatialExtremes-1.9-1/SpatialExtremes/MD5 | 16 +++++----- SpatialExtremes-1.9-1/SpatialExtremes/R/simmaxstab.R | 2 - SpatialExtremes-1.9-1/SpatialExtremes/data/rainfall.RData |binary SpatialExtremes-1.9-1/SpatialExtremes/data/swissalt.RData |binary SpatialExtremes-1.9-1/SpatialExtremes/inst/doc/SpatialExtremesGuide.pdf |binary SpatialExtremes-1.9-1/SpatialExtremes/src/fft.c |only SpatialExtremes-1.9-1/SpatialExtremes/src/gpdproc.c |only SpatialExtremes-1.9-1/SpatialExtremes/src/header.h | 12 ++++++- 11 files changed, 27 insertions(+), 18 deletions(-)
More information about SpatialExtremes at CRAN
Permanent link
Title: Dirichlet Process Bayesian Clustering, Profile Regression
Description: Dirichlet process Bayesian clustering, also known as
profile regression.
Author: David I. Hastie
Maintainer: Silvia Liverani
Diff between PReMiuM versions 3.0.11 dated 2013-01-29 and 3.0.13 dated 2013-01-30
PReMiuM-3.0.11/PReMiuM/src/lib/include/boost |only PReMiuM-3.0.13/PReMiuM/DESCRIPTION | 15 PReMiuM-3.0.13/PReMiuM/MD5 | 1370 -------------------------- PReMiuM-3.0.13/PReMiuM/man/PReMiuM-package.Rd | 2 PReMiuM-3.0.13/PReMiuM/src/Makevars | 25 PReMiuM-3.0.13/PReMiuM/src/Makevars.win | 2 6 files changed, 15 insertions(+), 1399 deletions(-)
Title: Collection of methods to detect dichotomous differential item
functioning (DIF) in psychometrics
Description: The difR package contains several traditional methods to
detect DIF in dichotomously scored items. Both uniform and
non-uniform DIF effects can be detected, with methods relying
upon item response models or not. Some methods deal with more
than one focal group.
Author: David Magis (U Liege), Sebastien Beland (UQAM) and Gilles
Raiche (UQAM)
Maintainer: David Magis
Diff between difR versions 4.3 dated 2012-06-13 and 4.4 dated 2013-01-30
difR-4.3/difR/inst/doc |only difR-4.4/difR/DESCRIPTION | 8 ++++---- difR-4.4/difR/MD5 | 9 ++++----- difR-4.4/difR/NEWS | 17 +++++++++++++++++ difR-4.4/difR/R/mantelHaenszel.R | 1 + difR-4.4/difR/inst/CITATION | 4 ++-- 6 files changed, 28 insertions(+), 11 deletions(-)
Title: Visualizing Generalized Canonical Discriminant and Canonical
Correlation Analysis
Description: This package includes functions for computing and
visualizing generalized canonical discriminant analyses and
canonical correlation analysis for a multivariate linear model.
Traditional canonical discriminant analysis is restricted to a
one-way MANOVA design and is equivalent to canonical
correlation analysis between a set of quantitative response
variables and a set of dummy variables coded from the factor
variable. The candisc package generalizes this to multi-way
MANOVA designs for all factors in a multivariate linear model,
computing canonical scores and vectors for each term. The
graphic functions provide low-rank (1D, 2D, 3D) visualizations
of terms in an mlm via the plot.candisc and heplot.candisc
methods.
Author: Michael Friendly and John Fox
Maintainer: Michael Friendly
Diff between candisc versions 0.6-0 dated 2013-01-23 and 0.6-1 dated 2013-01-30
DESCRIPTION | 35 +++++------ MD5 | 28 +++++--- NAMESPACE | 8 ++ NEWS | 14 ++++ R/cancor.R | 87 ++++++++++++++++++++++----- R/heplot.cancor.R | 2 R/heplot3d.cancor.R |only R/plot.cancor.R |only R/plot.candisc.R | 2 R/redundancy.R |only R/vectors.R | 13 +++- R/vectors3d.R |only man/cancor.Rd | 154 ++++++++++++++++++++++++++++++++++++++++++------- man/candisc-package.Rd | 21 +++++- man/heplot.cancor.Rd | 66 ++++++++++++++++----- man/plot.cancor.Rd |only man/redundancy.Rd |only man/vectors.Rd | 51 +++++++++------- 18 files changed, 371 insertions(+), 110 deletions(-)
Title: Taxonomic information from around the web.
Description: Taxonomic information from around the web.
Author: Scott Chamberlain [aut, cre], Eduard Szoecs [aut], Carl
Boettiger [aut], Ignasi Bartomeus [aut]
Maintainer: Scott Chamberlain
Diff between taxize versions 0.0.2 dated 2012-12-07 and 0.0.3 dated 2013-01-30
taxize-0.0.2/taxize/man/itis.Rd |only taxize-0.0.3/taxize/CONTRIBUTING.md |only taxize-0.0.3/taxize/DESCRIPTION | 38 taxize-0.0.3/taxize/MD5 | 169 - taxize-0.0.3/taxize/NAMESPACE | 61 taxize-0.0.3/taxize/NEWS | 25 taxize-0.0.3/taxize/R/classification.R | 18 taxize-0.0.3/taxize/R/col_children.R |only taxize-0.0.3/taxize/R/col_classification.R |only taxize-0.0.3/taxize/R/col_downstream.R |only taxize-0.0.3/taxize/R/eol_dataobjects.R |only taxize-0.0.3/taxize/R/get_genes.R |only taxize-0.0.3/taxize/R/get_genes_avail.R | 10 taxize-0.0.3/taxize/R/get_seqs.R | 18 taxize-0.0.3/taxize/R/get_tsn.R | 50 taxize-0.0.3/taxize/R/get_uid.R | 47 taxize-0.0.3/taxize/R/gisd_isinvasive.R |only taxize-0.0.3/taxize/R/itis.R | 1472 +++++++++- taxize-0.0.3/taxize/R/itis_acceptname.R | 1 taxize-0.0.3/taxize/R/itis_downstream.R | 2 taxize-0.0.3/taxize/R/itis_name.R | 8 taxize-0.0.3/taxize/R/itis_phymat_format.R | 38 taxize-0.0.3/taxize/R/itis_taxrank.R | 8 taxize-0.0.3/taxize/R/iucn_summary.R | 10 taxize-0.0.3/taxize/R/phylomatic_tree.R | 111 taxize-0.0.3/taxize/R/tax_name.R |only taxize-0.0.3/taxize/R/taxize-package.R | 20 taxize-0.0.3/taxize/R/tnrs.R |only taxize-0.0.3/taxize/R/tnrs_sources.r |only taxize-0.0.3/taxize/R/tpl_search.r | 10 taxize-0.0.3/taxize/R/ubio_namebank.R | 8 taxize-0.0.3/taxize/R/zzz.R | 1 taxize-0.0.3/taxize/README.md | 94 taxize-0.0.3/taxize/inst |only taxize-0.0.3/taxize/man/col_children.Rd |only taxize-0.0.3/taxize/man/col_classification.Rd |only taxize-0.0.3/taxize/man/col_downstream.Rd |only taxize-0.0.3/taxize/man/eol_dataobjects.Rd |only taxize-0.0.3/taxize/man/get_genes.Rd |only taxize-0.0.3/taxize/man/get_seqs.Rd | 3 taxize-0.0.3/taxize/man/get_tsn.Rd | 15 taxize-0.0.3/taxize/man/get_uid.Rd | 7 taxize-0.0.3/taxize/man/getacceptednamesfromtsn.Rd |only taxize-0.0.3/taxize/man/getanymatchcount.Rd |only taxize-0.0.3/taxize/man/getcommentdetailfromtsn.Rd |only taxize-0.0.3/taxize/man/getcommonnamesfromtsn.Rd |only taxize-0.0.3/taxize/man/getcoremetadatafromtsn.Rd |only taxize-0.0.3/taxize/man/getcoveragefromtsn.Rd |only taxize-0.0.3/taxize/man/getcredibilityratingfromtsn.Rd |only taxize-0.0.3/taxize/man/getcredibilityratings.Rd |only taxize-0.0.3/taxize/man/getcurrencyfromtsn.Rd |only taxize-0.0.3/taxize/man/getdatedatafromtsn.Rd |only taxize-0.0.3/taxize/man/getdescription.Rd |only taxize-0.0.3/taxize/man/getexpertsfromtsn.Rd |only taxize-0.0.3/taxize/man/getfullhierarchyfromtsn.Rd |only taxize-0.0.3/taxize/man/getfullrecordfromlsid.Rd |only taxize-0.0.3/taxize/man/getfullrecordfromtsn.Rd |only taxize-0.0.3/taxize/man/getgeographicdivisionsfromtsn.Rd |only taxize-0.0.3/taxize/man/getgeographicvalues.Rd |only taxize-0.0.3/taxize/man/getglobalspeciescompletenessfromtsn.Rd |only taxize-0.0.3/taxize/man/gethierarchydownfromtsn.Rd |only taxize-0.0.3/taxize/man/gethierarchyupfromtsn.Rd |only taxize-0.0.3/taxize/man/getitistermsfromcommonname.Rd |only taxize-0.0.3/taxize/man/getitistermsfromscientificname.Rd |only taxize-0.0.3/taxize/man/getjurisdictionaloriginfromtsn.Rd |only taxize-0.0.3/taxize/man/getjurisdictionoriginvalues.Rd |only taxize-0.0.3/taxize/man/getjurisdictionvalues.Rd |only taxize-0.0.3/taxize/man/getkey.Rd | 1 taxize-0.0.3/taxize/man/getkingdomnamefromtsn.Rd |only taxize-0.0.3/taxize/man/getkingdomnames.Rd |only taxize-0.0.3/taxize/man/getlastchangedate.Rd |only taxize-0.0.3/taxize/man/getlsidfromtsn.Rd |only taxize-0.0.3/taxize/man/getothersourcesfromtsn.Rd |only taxize-0.0.3/taxize/man/getparenttsnfromtsn.Rd |only taxize-0.0.3/taxize/man/getpublicationsfromtsn.Rd |only taxize-0.0.3/taxize/man/getranknames.Rd |only taxize-0.0.3/taxize/man/getrecordfromlsid.Rd |only taxize-0.0.3/taxize/man/getreviewyearfromtsn.Rd |only taxize-0.0.3/taxize/man/getscientificnamefromtsn.Rd |only taxize-0.0.3/taxize/man/getsynonymnamesfromtsn.Rd |only taxize-0.0.3/taxize/man/gettaxonauthorshipfromtsn.Rd |only taxize-0.0.3/taxize/man/gettaxonomicranknamefromtsn.Rd |only taxize-0.0.3/taxize/man/gettaxonomicusagefromtsn.Rd |only taxize-0.0.3/taxize/man/gettsnbyvernacularlanguage.Rd |only taxize-0.0.3/taxize/man/gettsnfromlsid.Rd |only taxize-0.0.3/taxize/man/getunacceptabilityreasonfromtsn.Rd |only taxize-0.0.3/taxize/man/getvernacularlanguages.Rd |only taxize-0.0.3/taxize/man/gisd_isinvasive.Rd |only taxize-0.0.3/taxize/man/itis_phymat_format.Rd | 14 taxize-0.0.3/taxize/man/itis_taxrank.Rd | 2 taxize-0.0.3/taxize/man/iucn_summary.Rd | 2 taxize-0.0.3/taxize/man/phylomatic_tree.Rd | 58 taxize-0.0.3/taxize/man/searchbycommonname.Rd |only taxize-0.0.3/taxize/man/searchbycommonnamebeginswith.Rd |only taxize-0.0.3/taxize/man/searchbycommonnameendswith.Rd |only taxize-0.0.3/taxize/man/searchbyscientificname.Rd |only taxize-0.0.3/taxize/man/searchforanymatch.Rd |only taxize-0.0.3/taxize/man/searchforanymatchpaged.Rd |only taxize-0.0.3/taxize/man/tax_name.Rd |only taxize-0.0.3/taxize/man/taxize-package.Rd | 30 taxize-0.0.3/taxize/man/tnrs.Rd |only taxize-0.0.3/taxize/man/tnrs_sources.Rd |only taxize-0.0.3/taxize/man/tpl_search.Rd | 10 taxize-0.0.3/taxize/man/ubio_namebank.Rd | 10 taxize-0.0.3/taxize/tests |only 105 files changed, 2032 insertions(+), 339 deletions(-)
Title: Dryad API interface.
Description: Interface to the API for Dryad
Author: Scott Chamberlain [aut, cre], Carl Boettiger [aut], Karthik Ram
[aut]
Maintainer: Scott Chamberlain
Diff between rdryad versions 0.1 dated 2012-02-23 and 0.1.1 dated 2013-01-30
rdryad-0.1.1/rdryad/DESCRIPTION | 20 ++-- rdryad-0.1.1/rdryad/MD5 | 51 ++++------ rdryad-0.1.1/rdryad/NAMESPACE | 8 - rdryad-0.1.1/rdryad/NEWS | 8 + rdryad-0.1.1/rdryad/R/download_dryadmetadata.r | 18 +-- rdryad-0.1.1/rdryad/R/download_url.r | 33 +++--- rdryad-0.1.1/rdryad/R/dr_identify.r |only rdryad-0.1.1/rdryad/R/dr_listidentifiers.r |only rdryad-0.1.1/rdryad/R/dr_listmetadataformats.r |only rdryad-0.1.1/rdryad/R/dr_listsets.r |only rdryad-0.1.1/rdryad/R/dryad_getfile.r | 70 ++++++-------- rdryad-0.1.1/rdryad/R/getalldryad_metadata.r | 20 +--- rdryad-0.1.1/rdryad/R/search_dryad.r | 110 +++++++++++----------- rdryad-0.1.1/rdryad/R/totimp.r | 31 +++--- rdryad-0.1.1/rdryad/R/totimp_dryad.r | 52 ++++------ rdryad-0.1.1/rdryad/README.md | 7 + rdryad-0.1.1/rdryad/man/download_dryadmetadata.Rd | 2 rdryad-0.1.1/rdryad/man/download_url.Rd | 4 rdryad-0.1.1/rdryad/man/dr_identify.Rd |only rdryad-0.1.1/rdryad/man/dr_listidentifiers.Rd |only rdryad-0.1.1/rdryad/man/dr_listmetadataformats.Rd |only rdryad-0.1.1/rdryad/man/dr_listsets.Rd |only rdryad-0.1.1/rdryad/man/dryad_getfile.Rd | 3 rdryad-0.1.1/rdryad/man/getalldryad_metadata.Rd | 2 rdryad-0.1.1/rdryad/man/search_dryad.Rd | 14 +- rdryad-0.1/rdryad/.gitignore |only rdryad-0.1/rdryad/R/identify.r |only rdryad-0.1/rdryad/R/listidentifiers.r |only rdryad-0.1/rdryad/R/listmetadataformats.r |only rdryad-0.1/rdryad/demos |only rdryad-0.1/rdryad/man/identify.Rd |only rdryad-0.1/rdryad/man/listidentifiers.Rd |only rdryad-0.1/rdryad/man/listmetadataformats.Rd |only rdryad-0.1/rdryad/other |only 34 files changed, 225 insertions(+), 228 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 3.6.1). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licensed under the GNU GPL version 2 or later, as is the rest
of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
Diff between RcppArmadillo versions 0.3.6.1 dated 2012-12-17 and 0.3.6.2 dated 2013-01-30
ChangeLog | 11 - DESCRIPTION | 8 MD5 | 47 ++-- inst/NEWS.Rd | 12 + inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/doc/unitTests-results/RcppArmadillo-unitTests.html | 18 - inst/doc/unitTests-results/RcppArmadillo-unitTests.txt | 30 +- inst/examples/kalman |only inst/include/armadillo | 1 inst/include/armadillo_bits/arma_version.hpp | 2 inst/include/armadillo_bits/compiler_setup.hpp | 25 ++ inst/include/armadillo_bits/config.hpp | 9 inst/include/armadillo_bits/diskio_meat.hpp | 120 ++++++++++- inst/include/armadillo_bits/fn_det.hpp | 65 +++++- inst/include/armadillo_bits/hdf5_misc.hpp | 84 ++++++- inst/include/armadillo_bits/promote_type.hpp | 173 +++++++++------- inst/include/armadillo_bits/restrictors.hpp | 56 +++-- inst/include/armadillo_bits/traits.hpp | 81 ++++++- inst/include/armadillo_bits/typedef.hpp | 90 ++++---- 20 files changed, 612 insertions(+), 220 deletions(-)
Title: Network representations of relationships in data
Description: The qgraph package can be used to visualize data as
networks.
Author: Sacha Epskamp, Angelique O. J. Cramer, Lourens J. Waldorp,
Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp
Diff between qgraph versions 1.2 dated 2013-01-24 and 1.2.1 dated 2013-01-30
DESCRIPTION | 12 MD5 | 96 NAMESPACE | 64 NEWS | 490 +-- R/Cent2EdgeNode.R | 124 R/DrawArrow.R | 62 R/Fade.R | 40 R/SelfLoop.R | 160 - R/XKCD.R | 20 R/addTrans.R | 40 R/centrality.R | 244 - R/getArgs.R | 22 R/igraphConversion.R | 106 R/isColor.R | 10 R/layout.R | 102 R/mapusr2in.R | 131 R/mixCols.R | 22 R/qgraph.R | 4550 +++++++++++++++---------------- R/qgraph.lavaan.R | 1179 ++++---- R/qgraph.panel.R | 116 R/qgraphGUI.R | 466 +-- R/qgraph_cfa.R | 220 - R/qgraph_growth.R | 330 +- R/qgraph_loadings.R | 622 ++-- R/qgraph_sem.R | 1049 +++---- R/qgraph_semModel.R | 579 +-- R/qgraph_svg.R | 358 +- README | 8 man/as.igraph.Rd | 56 man/big5.Rd | 46 man/big5groups.Rd | 50 man/centrality.Rd | 124 man/plot.qgraph.Rd | 50 man/print.qgraph.Rd | 58 man/qgraph-package.Rd | 70 man/qgraph.Rd | 791 ++--- man/qgraph.animate.Rd | 308 +- man/qgraph.cfa.Rd | 206 - man/qgraph.gui.Rd | 104 man/qgraph.lavaan.Rd | 278 - man/qgraph.layout.fruchtermanreingold.Rd | 202 - man/qgraph.panel.Rd | 96 man/qgraph.semModel.Rd | 208 - man/qgraph_efa.Rd | 106 man/qgraph_loadings.Rd | 122 man/qgraph_pca.Rd | 104 man/qgraph_sem.Rd | 286 - man/qgraph_svg.Rd | 138 man/summary.qgraph.Rd | 58 49 files changed, 7336 insertions(+), 7347 deletions(-)
Title: Command line option parser.
Description: A command line parser inspired by Python's 'optparse'
library to be used with Rscript to write "#!" shebang scripts
that accept short and long flag/options.
Author: Trevor L Davis. Some documentation and examples ported from
Allen Day's getopt package. Some documentation from the
optparse Python module by the Python Software Foundation.
Contributions from Steve Lianoglou and Jim Nikelski.
Maintainer: Trevor L Davis
Diff between optparse versions 1.0.0 dated 2012-11-21 and 1.0.1 dated 2013-01-30
DESCRIPTION | 17 +++++++---------- MD5 | 4 ++-- inst/doc/optparse.pdf |binary 3 files changed, 9 insertions(+), 12 deletions(-)
Title: A GUI for Missing Data Exploration
Description: This package provides numeric and graphical summaries for
the missing values from both discrete and continuous variables.
A variety of imputation methods are applied, including
univariate imputations like fixed or random values, multiple
imputations based on other packages, and imputations
conditioned on a categorical variable.
Author: Xiaoyue Cheng, Dianne Cook, Heike Hofmann
Maintainer: Xiaoyue Cheng
Diff between MissingDataGUI versions 0.1-3 dated 2012-05-17 and 0.1-4 dated 2013-01-30
DESCRIPTION | 8 ++-- MD5 | 7 ++- NEWS |only R/WatchMissingValues.r | 89 +++++++++++++++++++++++++++++++++++----------- inst/doc/introduction.pdf |binary 5 files changed, 76 insertions(+), 28 deletions(-)
More information about MissingDataGUI at CRAN
Permanent link
Title: Calculate density dependent likelihood of a phylogenetic tree
Description: Calculates the density dependent likelihood of a
phylogenetic tree. It takes branching and sampling times as an
argument and integrates the likelihood function over the whole
tree.
Author: Gabriel E Leventhal, partly adapted from MATLAB code by Awad H.
Al-Mohy and using the routines DLNAC1 and DLARPC by Sheung Hun
Cheng, and DLAPST from ScaLAPACK.
Maintainer: Gabriel E Leventhal
Diff between expoTree versions 0.8 dated 2013-01-25 and 0.8.1 dated 2013-01-30
ChangeLog |only DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- src/expmv.c | 4 ++-- src/expoTree.c | 10 +++++----- src/expomv.c | 10 +++++----- src/simulate_trees.cpp | 4 ++-- 7 files changed, 24 insertions(+), 23 deletions(-)
Title: User-specified terms for the statnet suite of packages
Description: A template package to demonstrate the use of
user-specified statistics for use in "ergm" models as part of
the "statnet" suite of packages.
Author: Mark S. Handcock
Maintainer: David R. Hunter
Diff between ergm.userterms versions 3.0-1 dated 2012-03-08 and 3.0-2 dated 2013-01-30
DESCRIPTION | 10 ++--- MD5 | 7 ++- inst/CITATION | 83 ++++++++++-------------------------------- man/ergm.userterms-package.Rd | 9 ++-- man/mindegree-term.Rd |only 5 files changed, 35 insertions(+), 74 deletions(-)
More information about ergm.userterms at CRAN
Permanent link
Title: Hexagonal Binning Routines
Description: Binning and plotting functions for hexagonal bins. Now
uses and relies on grid graphics and formal (S4) classes and
methods.
Author: Dan Carr
Maintainer: ORPHANED
Diff between hexbin versions 1.26.0 dated 2011-04-26 and 1.26.1 dated 2013-01-30
DESCRIPTION | 13 ++++++---- MD5 |only R/hdiffplot.R | 16 ++++++------- R/hexViewport.R | 4 +-- R/hexbinplot.R | 36 +++++++++++++++--------------- R/hexpanel.R | 51 ++++++++++++++++++++++--------------------- inst/doc/hexagon_binning.pdf |binary man/NHANES.Rd | 8 ------ man/hexList.Rd | 4 --- man/hexVP.abline.Rd | 3 -- man/hexViewport.Rd | 3 -- man/panel.hexgrid.Rd | 4 --- man/panel.hexloess.Rd | 12 ++++------ tests/hdiffplot.Rout.save | 44 ++++++++++++++++++------------------- 14 files changed, 90 insertions(+), 108 deletions(-)