Title: Automating Mplus Model Estimation and Interpretation
Diff between MplusAutomation versions 0.5-3 dated 2012-08-08 and 0.5-4 dated 2013-02-15
More information about MplusAutomation at CRAN
Description: The MplusAutomation package leverages the flexibility of
the R language to automate latent variable model estimation and
interpretation using Mplus, a powerful latent variable modeling
program developed by Muthen and Muthen (www.statmodel.com).
Specifically, MplusAutomation provides routines for creating
related groups of models, running batches of models, and
extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist, Joshua Wiley
Maintainer: Michael Hallquist
DESCRIPTION | 14
MD5 | 32
NAMESPACE | 6
NEWS | 17
R/compareModels.R | 274 ++++---
R/createModels.R | 1457 +++++++++++++++++++++++++----------------
R/extractAuxE.R | 47 -
R/extractModIndices.R | 111 ++-
R/extractParameters.R | 419 ++++++++---
R/extractSaveData.R | 548 +++++++++++----
R/graphModels.R | 134 ++-
R/parseOutput.R | 378 ++++++++--
R/runModels.R | 2
R/utilityFunctions.R | 109 +--
inst/doc/Vignette.pdf |binary
man/MplusAutomation-package.Rd | 6
man/prepareMplusData.Rd | 13
17 files changed, 2387 insertions(+), 1180 deletions(-)
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-05 0.0.3
2012-11-06 0.0.2
2012-10-17 0.0.1
Title: hierarchical multinomial marginal models
Diff between hmmm versions 1.0.0 dated 2012-11-17 and 1.0-1 dated 2013-02-15
Description: Functions for specifying and fitting marginal models for
contingency tables proposed by Bergsma and Rudas (2002) here
called hierarchical multinomial marginal models (hmmm) and
their extensions presented by Bartolucci et al. (2007);
multinomial Poisson homogeneous (mph) models and homogeneous
linear predictor (hlp) models for contingency tables proposed
by Lang (2004) and (2005); hidden Markov models where the
distribution of the observed variables is described by a
marginal model. Inequality constraints on the parameters are
allowed and can be tested.
Author: Roberto Colombi [aut, cre], Sabrina Giordano [aut], Manuela
Cazzaro [aut], Joseph B. Lang [ctb]
Maintainer: Colombi Roberto
hmmm-1.0-1/hmmm/DESCRIPTION | 19
hmmm-1.0-1/hmmm/MD5 | 64 +--
hmmm-1.0-1/hmmm/NAMESPACE | 3
hmmm-1.0-1/hmmm/NEWS |only
hmmm-1.0-1/hmmm/R/hidden.R |only
hmmm-1.0-1/hmmm/R/margmod.R | 348 ++++++++++++-----
hmmm-1.0-1/hmmm/R/mph_ineq.R | 217 ----------
hmmm-1.0-1/hmmm/data/drinks.rda |binary
hmmm-1.0-1/hmmm/demo/accident_covariate.r | 12
hmmm-1.0-1/hmmm/demo/custservtraining_doublemonotone.r | 10
hmmm-1.0-1/hmmm/demo/kentucky_hmmm_inequality.r | 14
hmmm-1.0-1/hmmm/demo/mph_inequality.r | 135 +-----
hmmm-1.0-1/hmmm/demo/polbirth_monotone.r | 12
hmmm-1.0-1/hmmm/inst/CITATION | 8
hmmm-1.0-1/hmmm/inst/doc/tutorial_hmmm.pdf |binary
hmmm-1.0-1/hmmm/inst/doc/tutorial_hmmm.rnw |only
hmmm-1.0-1/hmmm/man/create.XMAT.Rd | 13
hmmm-1.0-1/hmmm/man/drinks.Rd | 4
hmmm-1.0-1/hmmm/man/getnames.Rd | 2
hmmm-1.0-1/hmmm/man/hidden.emfit.Rd | 45 +-
hmmm-1.0-1/hmmm/man/hmmm-package.Rd | 3
hmmm-1.0-1/hmmm/man/hmmm.chibar.Rd | 18
hmmm-1.0-1/hmmm/man/hmmm.mlfit.Rd | 4
hmmm-1.0-1/hmmm/man/hmmm.model.Rd | 11
hmmm-1.0-1/hmmm/man/hmmm.model.X.Rd | 11
hmmm-1.0-1/hmmm/man/loglin.model.Rd | 4
hmmm-1.0-1/hmmm/man/mphineq.fit.Rd | 69 +--
hmmm-1.0-1/hmmm/man/print.hmmmchibar.Rd | 8
hmmm-1.0-1/hmmm/man/recursive.Rd | 2
hmmm-1.0-1/hmmm/man/summary.hmmmchibar.Rd | 8
hmmm-1.0-1/hmmm/man/summary.mphfit.Rd | 10
hmmm-1.0-1/hmmm/vignettes/Tutorial_bib.bib | 298 +++++++++-----
hmmm-1.0-1/hmmm/vignettes/tutorial_hmmm.rnw |only
hmmm-1.0.0/hmmm/R/hidden.hmmm.R |only
hmmm-1.0.0/hmmm/inst/doc/tutorial_hmmm.Rnw |only
hmmm-1.0.0/hmmm/man/chibar.Rd |only
hmmm-1.0.0/hmmm/vignettes/tutorial_hmmm.Rnw |only
37 files changed, 653 insertions(+), 699 deletions(-)
Title: Infrastructure for seriation
Diff between seriation versions 1.0-9 dated 2012-11-19 and 1.0-10 dated 2013-02-15
Description: Infrastructure for seriation with an implementation of
several seriation/sequencing techniques to reorder matrices,
dissimilarity matrices, and dendrograms. Also contains some
visualizations techniques based on seriation.
Author: Michael Hahsler, Christian Buchta and Kurt Hornik
Maintainer: Michael Hahsler
DESCRIPTION | 9 +++---
MD5 | 20 ++++++-------
R/bea.R | 12 +++++---
R/criterion.matrix.R | 3 +-
R/grid.R | 73 ++++++++++++++++++++++++++++++++++++++++++-------
R/pimage.R | 29 ++++++++++++++-----
R/seriate.dist.R | 9 +++++-
inst/NEWS | 5 +++
inst/doc/seriation.Rnw | 39 ++++++++++++++------------
inst/doc/seriation.pdf |binary
man/pimage.Rd | 16 ++++++----
11 files changed, 155 insertions(+), 60 deletions(-)
Title: Graph Probability Distributions with User Supplied Parameters
and Stats.
Diff between visualize versions 2.2 dated 2013-01-15 and 3.0 dated 2013-02-15
Description: Graphs the pdf or pmf and highlights what area or
probability is present in user defined locations. Visualize is
able to provide lower tail, bounded, and upper tail
calculations. Supports strict and equal to inequalities. Also
provided on the graph is the mean and variance of the
distribution.
Author: James Balamuta
Maintainer: James Balamuta
DESCRIPTION | 17 ++++++----
MD5 | 34 ++++++++++-----------
R/visualize.binom.R | 4 +-
R/visualize.discrete.R | 66 +++++++++++++++++++++++++----------------
R/visualize.geom.R | 4 +-
R/visualize.hyper.R | 4 +-
R/visualize.it.R | 27 +++++++++++++---
R/visualize.nbinom.R | 4 +-
R/visualize.pois.R | 4 +-
man/visualize-package.Rd | 23 +++++++++-----
man/visualize.binom.Rd | 17 ++++++----
man/visualize.discrete.Rd | 7 +++-
man/visualize.distributions.Rd | 33 ++++++++++----------
man/visualize.geom.Rd | 11 ++++--
man/visualize.hyper.Rd | 11 ++++--
man/visualize.it.Rd | 5 ++-
man/visualize.nbinom.Rd | 11 ++++--
man/visualize.pois.Rd | 11 ++++--
18 files changed, 179 insertions(+), 114 deletions(-)
Title: imputation
Diff between imputation versions 1.3 dated 2011-06-19 and 2.0.0 dated 2013-02-15
Description: Fill missing values in a data matrix using mean, kNN, SVD,
Singular Value Thresholding, tree, or linear imputation,.
Author: Jeffrey Wong
Maintainer: Jeffrey Wong
imputation-1.3/imputation/man/imputation-internal.Rd |only
imputation-1.3/imputation/man/imputation-package.Rd |only
imputation-2.0.0/imputation/DESCRIPTION | 21 +-
imputation-2.0.0/imputation/MD5 |only
imputation-2.0.0/imputation/NAMESPACE | 17 +
imputation-2.0.0/imputation/R/SVD.R | 183 +++++++-----------
imputation-2.0.0/imputation/R/SVT.R |only
imputation-2.0.0/imputation/R/SVTApprox.R |only
imputation-2.0.0/imputation/R/gbmImpute.R |only
imputation-2.0.0/imputation/R/kNN.R | 179 +++++++++++++----
imputation-2.0.0/imputation/R/lmImpute.R |only
imputation-2.0.0/imputation/R/meanImpute.R |only
imputation-2.0.0/imputation/R/tsImpute.R |only
imputation-2.0.0/imputation/R/utils.R |only
imputation-2.0.0/imputation/README.md |only
imputation-2.0.0/imputation/man/SVDImpute.Rd | 76 ++-----
imputation-2.0.0/imputation/man/SVTApproxImpute.Rd |only
imputation-2.0.0/imputation/man/SVTImpute.Rd | 70 ++----
imputation-2.0.0/imputation/man/cv.SVDImpute.Rd | 57 +----
imputation-2.0.0/imputation/man/cv.SVTApproxImpute.Rd |only
imputation-2.0.0/imputation/man/cv.SVTImpute.Rd | 68 ++----
imputation-2.0.0/imputation/man/cv.gbmImpute.Rd |only
imputation-2.0.0/imputation/man/cv.kNNImpute.Rd | 56 +----
imputation-2.0.0/imputation/man/cv.lmImpute.Rd |only
imputation-2.0.0/imputation/man/cv.meanImpute.Rd |only
imputation-2.0.0/imputation/man/cv.tsImpute.Rd |only
imputation-2.0.0/imputation/man/gbmImpute.Rd |only
imputation-2.0.0/imputation/man/kNNImpute.Rd | 84 ++++----
imputation-2.0.0/imputation/man/lmImpute.Rd |only
imputation-2.0.0/imputation/man/meanImpute.Rd |only
imputation-2.0.0/imputation/man/tsImpute.Rd |only
31 files changed, 385 insertions(+), 426 deletions(-)
Title: Nonparametric monotone regression
Description: Estimates monotone regression and variance functions in a
nonparametric model.
Author: This version Kay Pilz and Steffanie Titoff. Earlier
developements by Holger Dette and Kay Pilz.
Maintainer: ORPHANED
Diff between monreg versions 0.1.1 dated 2009-02-25 and 0.1.2 dated 2013-02-15
DESCRIPTION | 18 +++++++++++++----- MD5 |only NAMESPACE | 6 ++---- man/monreg.rd | 8 +------- man/monvardiff.rd | 8 +------- man/monvarresid.rd | 14 +++----------- src/monreg.c | 2 +- 7 files changed, 21 insertions(+), 35 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-08-04 1.0
Title: Spatial Probit Models
Diff between spatialprobit versions 0.9-2 dated 2012-05-22 and 0.9-6 dated 2013-02-15
Description: Bayesian Estimation of Spatial Probit and Tobit Models
Author: Stefan Wilhelm
Maintainer: Stefan Wilhelm
spatialprobit-0.9-2/spatialprobit/man/sar_probit_mcmc.Rd |only
spatialprobit-0.9-6/spatialprobit/.Rinstignore | 2
spatialprobit-0.9-6/spatialprobit/DESCRIPTION | 14
spatialprobit-0.9-6/spatialprobit/MD5 | 37
spatialprobit-0.9-6/spatialprobit/NAMESPACE | 33
spatialprobit-0.9-6/spatialprobit/NEWS | 16
spatialprobit-0.9-6/spatialprobit/R/LeSagePaceExperiment.R |only
spatialprobit-0.9-6/spatialprobit/R/SpatialProbit-MCMC.R | 513 +++++-----
spatialprobit-0.9-6/spatialprobit/R/kNearestNeighbors.R |only
spatialprobit-0.9-6/spatialprobit/R/metropolis-hastings-rho.R |only
spatialprobit-0.9-6/spatialprobit/R/rtnorm.R |only
spatialprobit-0.9-6/spatialprobit/R/sar_base.r | 70 +
spatialprobit-0.9-6/spatialprobit/R/sartobit.R |only
spatialprobit-0.9-6/spatialprobit/R/sem.R |only
spatialprobit-0.9-6/spatialprobit/R/semprobit.R |only
spatialprobit-0.9-6/spatialprobit/data |only
spatialprobit-0.9-6/spatialprobit/man/CKM.Rd |only
spatialprobit-0.9-6/spatialprobit/man/Katrina.Rd |only
spatialprobit-0.9-6/spatialprobit/man/LeSagePaceExperiment.Rd |only
spatialprobit-0.9-6/spatialprobit/man/coef.sarprobit.Rd | 11
spatialprobit-0.9-6/spatialprobit/man/kNearestNeighbors.Rd | 13
spatialprobit-0.9-6/spatialprobit/man/marginal.effects.sarprobit.Rd |only
spatialprobit-0.9-6/spatialprobit/man/plot.sarprobit.Rd | 18
spatialprobit-0.9-6/spatialprobit/man/sar_lndet.Rd | 19
spatialprobit-0.9-6/spatialprobit/man/sarprobit.Rd |only
spatialprobit-0.9-6/spatialprobit/man/sartobit.Rd |only
spatialprobit-0.9-6/spatialprobit/man/semprobit.Rd |only
spatialprobit-0.9-6/spatialprobit/man/summary.sarprobit.Rd | 18
28 files changed, 513 insertions(+), 251 deletions(-)
Title: Programming with Big Data -- Scalable Linear Algebra Packages
Diff between pbdSLAP versions 0.1-3 dated 2013-01-01 and 0.1-4 dated 2013-02-15
Description: pbdSLAP utilizes scalable linear algebra packages mainly
including BLACS, PBLAS, and ScaLAPACK in double precision via
pbdMPI based on ScaLAPACK version 2.0.2.
Author: Wei-Chen Chen [aut, cre], Drew Schmidt [aut], George Ostrouchov
[aut], Pragneshkumar Patel [aut]
Maintainer: Wei-Chen Chen
ChangeLog | 3 +++
DESCRIPTION | 13 ++++++-------
MD5 | 13 +++++++------
configure | 4 ++++
inst/CITATION | 4 ++--
inst/doc/pbdSLAP-guide.pdf |binary
src/ScaLAPACK/Makefile | 3 ++-
src/ScaLAPACK/pdtrcon.f |only
8 files changed, 24 insertions(+), 16 deletions(-)
Title: Multivariate Autoregressive State-Space Modeling
Diff between MARSS versions 3.3 dated 2013-01-26 and 3.4 dated 2013-02-15
Description: The MARSS package provides maximum-likelihood parameter
estimation for constrained and unconstrained linear
multivariate autoregressive state-space (MARSS) models fit to
multivariate time-series data. Fitting is primarily via an
Expectation-Maximization (EM) algorithm, although fitting via
the BFGS algorithm (using the optim function) is also provided.
MARSS models are a class of dynamic linear model (DLM) and
vector autoregressive model (VAR) model. Functions are
provided for parametric and innovations bootstrapping, Kalman
filtering and smoothing, bootstrap model selection criteria
(AICb), confidences intervals via the Hessian approximation and
via bootstrapping and calculation of auxiliary residuals for
detecting outliers and shocks. The user guide shows examples
of using MARSS for parameter estimation for a variety of
applications, model selection, dynamic factor analysis, outlier
and shock detection, and addition of covariates. Type
RShowDoc("UserGuide", package="MARSS") at the R command line to
open the MARSS user guide. Online workshops (lecture material)
at http://faculty.washington.edu/eeholmes/workshops.shtml
Author: Eli Holmes, Eric Ward, and Kellie Wills, NOAA, Seattle, USA
Maintainer: Eli Holmes
MARSS-3.3/MARSS/inst/doc/Manual.pdf |only
MARSS-3.3/MARSS/inst/doc/README_vers_3.0.pdf |only
MARSS-3.3/MARSS/inst/doc/README_vers_3.0.rnw |only
MARSS-3.4/MARSS/DESCRIPTION | 8
MARSS-3.4/MARSS/MD5 | 23
MARSS-3.4/MARSS/NEWS | 10
MARSS-3.4/MARSS/R/MARSS_dfa.r | 3
MARSS-3.4/MARSS/inst/doc/EMDerivation.pdf |binary
MARSS-3.4/MARSS/inst/doc/Manual.bib |10053 +++++++++++----------------
MARSS-3.4/MARSS/inst/doc/Quick_Start.pdf |binary
MARSS-3.4/MARSS/inst/doc/UserGuide.Rnw | 25
MARSS-3.4/MARSS/inst/doc/UserGuide.pdf |binary
MARSS-3.4/MARSS/man/MARSS.Rd | 8
MARSS-3.4/MARSS/man/MARSS.dfa.rd | 25
14 files changed, 4427 insertions(+), 5728 deletions(-)
Title: Ensemble Network Aggregation
Diff between ENA versions 1.1-103 dated 2012-07-19 and 1.2-4 dated 2013-02-15
Description: Ensemble network aggregation is an approach which
leverages the inverse-rank-product (IRP) method to combine
networks. This package provides the capabilities to use IRP to
bootstrap a dataset using a single method, to aggregate the
networks produced by multiple methods, or to aggregate the
networks produced on different datasets.
Author: Jeffrey D. Allen
Maintainer: Jeffrey D. Allen
DESCRIPTION | 17 ++++++++-----
MD5 | 56 ++++++++++++++++++++++++++++++----------------
NAMESPACE | 5 ++++
R/adj2mat.R |only
R/bootstrap.R | 11 ++++++++-
R/buildAracne.R | 10 ++++++++
R/buildGenenet.R | 10 ++++++++
R/buildSpace.R | 8 ++++++
R/buildWgcna.R | 7 +++++
R/data.R |only
R/edgeCutoff.R |only
R/ena.R | 26 +++++++++++++++++++--
R/getTableAddressing.R | 33 ++++++++++++++++++++++++---
R/mat2adj.R |only
R/simulateNetwork.R |only
R/symmetricize.R | 10 ++++++++
R/tri2mat.R |only
data |only
inst/doc/ENASample.pdf |binary
man/adj2mat.Rd |only
man/bootstrap.Rd | 10 +++++++-
man/buildAracne.Rd | 10 ++++++++
man/buildGenenet.Rd | 10 ++++++++
man/buildSpace.Rd | 9 +++++++
man/buildWgcna.Rd | 8 ++++++
man/edgeCutoff.Rd |only
man/ena.Rd | 24 +++++++++++++++++++
man/getTableAddressing.Rd | 30 +++++++++++++++++++++++-
man/mat2adj.Rd |only
man/net1345.Rd |only
man/net17.Rd |only
man/net231.Rd |only
man/net44.Rd |only
man/net613.Rd |only
man/net83.Rd |only
man/simulateNetwork.Rd |only
man/symmetricize.Rd | 10 ++++++++
man/tri2mat.Rd |only
38 files changed, 270 insertions(+), 34 deletions(-)
Title: Data sets for econometrics
Diff between Ecdat versions 0.2-0 dated 2013-01-21 and 0.2-1 dated 2013-02-15
Description: Data sets for econometrics
Author: Yves Croissant
Maintainer: Spencer Graves
DESCRIPTION | 13 +++++++------
MD5 | 15 ++++++++++++---
R/financialCrisisFiles.R |only
R/readFinancialCrisisFiles.R |only
data/FinancialCrisisFiles.rda |only
data/bankingCrises.rda |only
data/datalist | 2 ++
inst/demoFiles |only
man/bankingCrises.Rd |only
man/financialCrisisFiles.Rd |only
man/incomeInequality.Rd | 6 +++---
man/readFinancialCrisisFiles.Rd |only
12 files changed, 24 insertions(+), 12 deletions(-)