Title: Safe implementation of Monte Carlo tests.
Description: Algorithms for the implementation and evaluation of Monte
Carlo tests, as well as for their use in multiple testing
procedures.
Author: Axel Gandy
Maintainer: Axel Gandy
Diff between simctest versions 2.1 dated 2012-09-17 and 2.2 dated 2013-02-20
DESCRIPTION | 7 ++++--- MD5 | 24 ++++++++++++------------ R/mmctest.R | 36 ++++++++++++++++++++++++------------ R/simctest.R | 2 +- inst/doc/papers.bib | 4 ++-- inst/doc/simctest-intro.pdf |binary inst/doc/simctest-mmctest-intro.Rnw | 28 +++++++++++++++------------- inst/doc/simctest-mmctest-intro.pdf |binary man/mmctSampler-class.Rd | 4 ++-- man/mmctSamplerGeneric-class.Rd | 4 ++-- man/mmctest-class.Rd | 4 ++-- man/mmctest-methods.Rd | 6 ++++-- man/mmctestres-class.Rd | 5 +++-- 13 files changed, 71 insertions(+), 53 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 3.6.3). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licensed under the GNU GPL version 2 or later, as is the rest
of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
Diff between RcppArmadillo versions 0.3.6.2 dated 2013-01-30 and 0.3.6.3 dated 2013-02-20
ChangeLog | 6 DESCRIPTION | 11 MD5 | 72 +-- inst/NEWS.Rd | 11 inst/include/armadillo_bits/Mat_bones.hpp | 6 inst/include/armadillo_bits/Mat_meat.hpp | 88 ++++ inst/include/armadillo_bits/SpMat_iterators_meat.hpp | 6 inst/include/armadillo_bits/SpMat_meat.hpp | 128 ++---- inst/include/armadillo_bits/SpSubview_bones.hpp | 2 inst/include/armadillo_bits/SpSubview_iterators_meat.hpp | 112 ++--- inst/include/armadillo_bits/SpSubview_meat.hpp | 151 +++---- inst/include/armadillo_bits/arma_ostream_meat.hpp | 3 inst/include/armadillo_bits/arma_version.hpp | 2 inst/include/armadillo_bits/diskio_meat.hpp | 2 inst/include/armadillo_bits/eGlueCube_meat.hpp | 4 inst/include/armadillo_bits/eGlue_meat.hpp | 4 inst/include/armadillo_bits/eOpCube_meat.hpp | 2 inst/include/armadillo_bits/fn_conv_to.hpp | 12 inst/include/armadillo_bits/fn_eps.hpp | 3 inst/include/armadillo_bits/fn_mean.hpp | 2 inst/include/armadillo_bits/fn_misc.hpp | 34 + inst/include/armadillo_bits/fn_norm.hpp | 6 inst/include/armadillo_bits/fn_rank.hpp | 3 inst/include/armadillo_bits/fn_reshape.hpp | 6 inst/include/armadillo_bits/fn_svd.hpp | 4 inst/include/armadillo_bits/glue_times_meat.hpp | 10 inst/include/armadillo_bits/op_cx_scalar_meat.hpp | 179 ++++++-- inst/include/armadillo_bits/op_dot_meat.hpp | 12 inst/include/armadillo_bits/op_find_meat.hpp | 173 +++++--- inst/include/armadillo_bits/op_inv_meat.hpp | 2 inst/include/armadillo_bits/op_mean_meat.hpp | 3 inst/include/armadillo_bits/op_var_meat.hpp | 6 inst/include/armadillo_bits/running_stat_meat.hpp | 2 inst/include/armadillo_bits/spop_var_meat.hpp | 4 inst/include/armadillo_bits/subview_elem1_meat.hpp | 14 inst/include/armadillo_bits/subview_elem2_meat.hpp | 22 - inst/include/armadillo_bits/unwrap.hpp | 317 +++++++++++++++ 37 files changed, 988 insertions(+), 436 deletions(-)
Title: Plots of the Empirical Attainment Function
Description: Plots of the empirical attainment function for two
objectives.
Author: Carlos Fonseca, Luis Paquete, Thomas Stützle, Manuel
López-Ibáñez and Marco Chiarandini.
Maintainer: Manuel López-Ibáñez
Diff between eaf versions 1.04 dated 2012-01-10 and 1.05 dated 2013-02-20
eaf-1.04/eaf/R/zzz.R |only eaf-1.04/eaf/cleanup |only eaf-1.04/eaf/eaf-Ex.R |only eaf-1.05/eaf/DESCRIPTION | 9 eaf-1.05/eaf/MD5 | 51 +- eaf-1.05/eaf/NAMESPACE | 1 eaf-1.05/eaf/NEWS | 51 ++ eaf-1.05/eaf/R/calls.R | 6 eaf-1.05/eaf/R/eaf.R | 551 ++++++++++++++++----------- eaf-1.05/eaf/doc/Makefile |only eaf-1.05/eaf/inst/scripts/eaf/Makefile |only eaf-1.05/eaf/inst/scripts/eaf/cvector.h |only eaf-1.05/eaf/inst/scripts/eaf/eaf.c | 412 ++++++++++++++++++-- eaf-1.05/eaf/inst/scripts/eaf/eaf.h | 68 ++- eaf-1.05/eaf/inst/scripts/eaf/eaf_io_priv.h | 24 - eaf-1.05/eaf/inst/scripts/eaf/eaf_main.c | 15 eaf-1.05/eaf/inst/scripts/eaf/svn_version | 2 eaf-1.05/eaf/inst/scripts/eafdiff/README | 6 eaf-1.05/eaf/inst/scripts/eafdiff/eafdiff.pl | 241 ++++++----- eaf-1.05/eaf/inst/scripts/eafplot/README | 6 eaf-1.05/eaf/inst/scripts/eafplot/eafplot.pl | 347 +++++++++-------- eaf-1.05/eaf/man/SPEA2minstoptimeRichmond.Rd | 2 eaf-1.05/eaf/man/eaf-package.Rd | 4 eaf-1.05/eaf/man/eafdiffplot.Rd | 47 +- eaf-1.05/eaf/man/eafplot.Rd | 29 - eaf-1.05/eaf/man/read.data.sets.Rd | 9 eaf-1.05/eaf/src/Reaf.c | 247 ++++++++++-- eaf-1.05/eaf/src/cvector.h |only eaf-1.05/eaf/src/eaf.c | 412 ++++++++++++++++++-- eaf-1.05/eaf/src/eaf.h | 68 ++- 30 files changed, 1954 insertions(+), 654 deletions(-)
Title: Translate CSS Selectors to XPath Expressions
Description: Translates a CSS3 selector into an equivalent XPath
expression. This allows us to use CSS selectors when working
with the XML package as it can only evaluate XPath expressions.
Also provided are convenience functions useful for using CSS
selectors on XML nodes. This package is a port of the Python
package "cssselect" (http://packages.python.org/cssselect/).
Author: Simon Potter [aut, trl, cre], Simon Sapin [aut], Ian Bicking
[aut]
Maintainer: Simon Potter
Diff between selectr versions 0.2-0 dated 2012-11-23 and 0.2-1 dated 2013-02-20
DESCRIPTION | 9 ++++---- MD5 | 11 +++++----- R/parser.R | 43 +++++++++++++++++++++++++++++++++++++----- R/xpath.R | 26 +++++++++++++------------ inst/CITATION |only inst/NEWS.Rd | 28 +++++++++++++++++++++++++-- inst/tests/test-translation.R | 4 --- 7 files changed, 90 insertions(+), 31 deletions(-)
Title: Sub microsecond accurate timing functions.
Description: Provides infrastructure to accurately measure and compare
the execution time of R expressions.
Author: Olaf Mersmann
Maintainer: Olaf Mersmann
Diff between microbenchmark versions 1.1-3 dated 2011-10-19 and 1.3-0 dated 2013-02-20
microbenchmark-1.1-3/microbenchmark/LICENSE |only microbenchmark-1.1-3/microbenchmark/man/timers.Rd |only microbenchmark-1.1-3/microbenchmark/src/nanotimer_linux.h |only microbenchmark-1.3-0/microbenchmark/ChangeLog | 106 +++- microbenchmark-1.3-0/microbenchmark/DESCRIPTION | 20 microbenchmark-1.3-0/microbenchmark/MD5 | 38 - microbenchmark-1.3-0/microbenchmark/NAMESPACE | 11 microbenchmark-1.3-0/microbenchmark/R/autoplot.R |only microbenchmark-1.3-0/microbenchmark/R/boxplot.R |only microbenchmark-1.3-0/microbenchmark/R/internal.R |only microbenchmark-1.3-0/microbenchmark/R/microbenchmark.R | 256 ---------- microbenchmark-1.3-0/microbenchmark/R/microtiming_precision.R |only microbenchmark-1.3-0/microbenchmark/R/print.R |only microbenchmark-1.3-0/microbenchmark/R/summary.R |only microbenchmark-1.3-0/microbenchmark/man/autoplot.microbenchmark.Rd |only microbenchmark-1.3-0/microbenchmark/man/boxplot.microbenchmark.Rd | 32 - microbenchmark-1.3-0/microbenchmark/man/coalesce.Rd | 23 microbenchmark-1.3-0/microbenchmark/man/convert_to_unit.Rd | 49 + microbenchmark-1.3-0/microbenchmark/man/find_prefix.Rd | 42 + microbenchmark-1.3-0/microbenchmark/man/microbenchmark.Rd | 146 +++-- microbenchmark-1.3-0/microbenchmark/man/microtiming_precision.Rd | 35 - microbenchmark-1.3-0/microbenchmark/man/print.microbenchmark.Rd | 37 + microbenchmark-1.3-0/microbenchmark/man/summary.microbenchmark.Rd |only microbenchmark-1.3-0/microbenchmark/src/Makevars | 2 microbenchmark-1.3-0/microbenchmark/src/nanotimer.c | 36 - microbenchmark-1.3-0/microbenchmark/src/nanotimer_gettime.h |only 26 files changed, 386 insertions(+), 447 deletions(-)
More information about microbenchmark at CRAN
Permanent link
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: R functions for processing lm, glm, mer and polr outputs.
Author: Andrew Gelman [aut], Yu-Sung Su [aut, cre], Masanao Yajima
[ctb], Jennifer Hill [ctb], Maria Grazia Pittau [ctb], Jouni
Kerman [ctb] and Tian Zheng [ctb]
Maintainer: Yu-Sung Su
Diff between arm versions 1.6-01.02 dated 2013-01-07 and 1.6-03 dated 2013-02-20
arm-1.6-01.02/arm/COPYING.LIB |only arm-1.6-03/arm/CHANGELOG | 7 ++++++ arm-1.6-03/arm/DESCRIPTION | 13 ++++++------ arm-1.6-03/arm/MD5 | 13 +++++------- arm-1.6-03/arm/R/AllClass.R | 1 arm-1.6-03/arm/R/coefplot.R | 43 +++++++++++++++++++++-------------------- arm-1.6-03/arm/R/display.R | 44 ++++++++++++++++++++++++++++++++++++++++++ arm-1.6-03/arm/man/display.Rd | 15 ++++++++------ 8 files changed, 96 insertions(+), 40 deletions(-)
Title: Read and write TIFF images
Description: This package provides an easy and simple way to read,
write and display bitmap images stored in the TIFF format. It
can read and write both files and in-memory raw vectors.
Author: Simon Urbanek
Maintainer: Simon Urbanek
Diff between tiff versions 0.1-3 dated 2012-11-05 and 0.1-4 dated 2013-02-20
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- NEWS | 4 ++++ src/read.c | 2 ++ 4 files changed, 13 insertions(+), 6 deletions(-)
Title: Client for Rserve
Description: Client for Rserve, allowing to connect to Rserve instances
and issue commands.
Author: Simon Urbanek
Maintainer: Simon Urbanek
Diff between RSclient versions 0.7-0 dated 2012-11-05 and 0.7-1 dated 2013-02-20
DESCRIPTION | 7 +- MD5 | 16 +++--- NAMESPACE | 2 NEWS |only R/cli.R | 34 +++++++++++- man/RC-methods.Rd |only man/RCC.Rd | 66 ++++++++++++++++++++---- src/RSprotocol.h | 14 ++++- src/cli.c | 144 ++++++++++++++++++++++++++++++++++++++++++++++-------- src/qap.h | 4 + 10 files changed, 240 insertions(+), 47 deletions(-)
Title: Public Key Infrastucture for R based on the X.509 standard
Description: This package provides PKI functions such as verifyig
certificates, RSA encription and signing which can be used to
build PKI infrastructure and perform cryptographic tasks.
Author: Simon Urbanek
Maintainer: Simon Urbanek
Diff between PKI versions 0.1-0 dated 2012-11-05 and 0.1-1 dated 2013-02-20
DESCRIPTION | 8 +- MD5 | 19 +++++- NAMESPACE | 4 - NEWS |only R/asn1.R |only R/rsa.R | 154 +++++++++++++++++++++++++++++++++++++++++++++++++++---- R/signR.R |only R/tools.R |only man/ASN1.Rd |only man/BIGNUMint.Rd |only man/RSA.Rd | 82 ++++++++++++++++++++++++++--- man/raw2hex.Rd |only src/asn1.c |only src/pki-x509.c | 74 ++++++++++++++++++++++++++ src/tools.c |only 15 files changed, 310 insertions(+), 31 deletions(-)
Title: R/Cassandra interface
Description: This packages provides a direct interface (without the use
of Java) to the most basic functionality of Apache Cassanda
such as login, updates and queries.
Author: Simon Urbanek
Maintainer: Simon Urbanek
Diff between RCassandra versions 0.1-1 dated 2012-11-05 and 0.1-2 dated 2013-02-20
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- NEWS | 4 ++++ src/cass.c | 1 + 4 files changed, 12 insertions(+), 6 deletions(-)
Title: The Fisher-EM algorithm
Description: The FisherEM package provides an efficient algorithm for
the unsupervised classification of high-dimensional data. This
FisherEM algorithm models and clusters the data in a
discriminative and low-dimensional latent subspace. It also
provides a low-dimensional representation of the clustered
data.
Author: Charles Bouveyron and Camille Brunet
Maintainer: Camille Brunet
Diff between FisherEM versions 1.3 dated 2013-02-13 and 1.3.1 dated 2013-02-20
FisherEM-1.3.1/FisherEM/DESCRIPTION | 9 +++++---- FisherEM-1.3.1/FisherEM/MD5 | 13 ++++++------- FisherEM-1.3.1/FisherEM/NAMESPACE | 2 +- FisherEM-1.3.1/FisherEM/R/fem.R | 10 +++++----- FisherEM-1.3.1/FisherEM/R/fem_main.R | 8 +++----- FisherEM-1.3.1/FisherEM/R/fem_sparse.R | 5 ++--- FisherEM-1.3.1/FisherEM/man/fem.Rd | 8 +------- FisherEM-1.3/FisherEM/R/estep_par.R |only 8 files changed, 23 insertions(+), 32 deletions(-)