Sat, 23 Mar 2013

New package RCA with initial version 1.3.1
Package: RCA
Type: Package
Title: Relational Class Analysis
Version: 1.3.1
Date: 2013-03-06
Author: Amir Goldberg , Gabor Csardi
Maintainer: Jinjian Zhai
Description: Relational Class Analysis (RCA) is a method for detecting heterogeneity in attitudinal data. RCA-R is a C-based package that implements the RCA algorithm and generates a simple-to-use command line executable program. src/igraph-R contains the header files of igraph-C which was written by Gabor.
Depends: igraph, R (>= 2.15.1)
LinkingTo: igraph
License: GPL (>= 2)
Repository: CRAN
LazyLoad: yes
Packaged: 2013-03-23 17:54:30 UTC; jinjian
NeedsCompilation: yes
Date/Publication: 2013-03-23 20:36:43

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Package flsa updated to version 1.05 with previous version 1.03 dated 2009-09-28

Title: Path algorithm for the general Fused Lasso Signal Approximator
Description: This package implements a path algorithm for the Fused Lasso Signal Approximator. For more details see the help files
Author: Holger Hoefling
Maintainer: Holger Hoefling

Diff between flsa versions 1.03 dated 2009-09-28 and 1.05 dated 2013-03-23

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 16 files changed, 321 insertions(+), 238 deletions(-)

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Package CondReg updated to version 0.16 with previous version 0.15 dated 2013-03-23

Title: Condition Number Regularized Covariance Estimation
Description: Based on \url{http://statistics.stanford.edu/~ckirby/techreports/GEN/2012/2012-10.pdf}
Author: Sang-Yun Oh , Bala Rajaratnam , Joong-Ho Won
Maintainer: Sang-Yun Oh

Diff between CondReg versions 0.15 dated 2013-03-23 and 0.16 dated 2013-03-23

 DESCRIPTION  |    6 +++---
 MD5          |    4 ++--
 tests/main.R |    8 ++++----
 3 files changed, 9 insertions(+), 9 deletions(-)

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Package thgenetics (with last version 0.3-2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-09-28 0.3-2
2011-01-14 0.3-1
2010-09-23 0.3-0

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Package Rserve updated to version 0.6-8.1 with previous version 0.6-8 dated 2012-02-20

Title: Binary R server
Description: Rserve acts as a socket server (TCP/IP or local sockets) which allows binary requests to be sent to R. Every connection has a separate workspace and working directory. Client-side implementations are available for popular languages such as C/C++ and Java, allowing any application to use facilities of R without the need of linking to R code. Rserve supports remote connection, user authentication and file transfer. A simple R client is included in this package as well.
Author: Simon Urbanek
Maintainer: Simon Urbanek

Diff between Rserve versions 0.6-8 dated 2012-02-20 and 0.6-8.1 dated 2013-03-23

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Package RSclient updated to version 0.7-1.1 with previous version 0.7-1 dated 2013-02-20

Title: Client for Rserve
Description: Client for Rserve, allowing to connect to Rserve instances and issue commands.
Author: Simon Urbanek
Maintainer: Simon Urbanek

Diff between RSclient versions 0.7-1 dated 2013-02-20 and 0.7-1.1 dated 2013-03-23

 DESCRIPTION |    6 +++---
 MD5         |    4 ++--
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 3 files changed, 6 insertions(+), 6 deletions(-)

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Package RCassandra updated to version 0.1-2.1 with previous version 0.1-2 dated 2013-02-20

Title: R/Cassandra interface
Description: This packages provides a direct interface (without the use of Java) to the most basic functionality of Apache Cassanda such as login, updates and queries.
Author: Simon Urbanek
Maintainer: Simon Urbanek

Diff between RCassandra versions 0.1-2 dated 2013-02-20 and 0.1-2.1 dated 2013-03-23

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Package pbatR updated to version 2.2-8 with previous version 2.2-7 dated 2012-12-29

Title: P2BAT
Description: This package provides data analysis via the pbat program, and an alternative internal implementation of the power calculations via simulation only. For analysis, this package provides a frontend to the PBAT software, automatically reading in the output from the pbat program and displaying the corresponding figure when appropriate (i.e. PBAT-logrank). It includes support for multiple processes and clusters. For analysis, users must download PBAT (developed by Christoph Lange) and accept it's license, available on the PBAT webpage. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.
Author: Thomas Hoffmann , with contributions from Christoph Lange
Maintainer: Thomas Hoffmann

Diff between pbatR versions 2.2-7 dated 2012-12-29 and 2.2-8 dated 2013-03-23

 DESCRIPTION      |    7 ++++---
 MD5              |    4 ++--
 src/powerSim.cpp |    4 ++++
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Package OUwie updated to version 1.33 with previous version 1.32 dated 2013-01-30

Title: Analysis of evolutionary rates in an OU framework
Description: Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck-based Hansen models that allow the strength of selection and stochastic motion to vary across selective regimes.
Author: Jeremy M. Beaulieu , Brian O'Meara
Maintainer: Jeremy M. Beaulieu

Diff between OUwie versions 1.32 dated 2013-01-30 and 1.33 dated 2013-03-23

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Package eha updated to version 2.2-2 with previous version 2.2-1 dated 2013-01-06

Title: Event History Analysis
Description: Event history analysis: Sampling of risk sets in Cox regression, selections in the Lexis diagram, bootstrapping. Parametric proportional hazards fitting with left truncation and right censoring for common families of distributions, piecewise constant hazards, and discrete models. AFT regression for left truncated and right censored data. Binary and Poisson regression for clustered data, fixed and random effects with bootstrapping.
Author: Göran Broström
Maintainer: Göran Broström

Diff between eha versions 2.2-1 dated 2013-01-06 and 2.2-2 dated 2013-03-23

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 DESCRIPTION             |    9 +++++----
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Package mprobit (with last version 0.9-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-01-12 0.9-3
2006-07-27 0.9-2

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Package randomSurvivalForest (with last version 3.6.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-05-26 3.6.3
2010-03-09 3.6.2
2010-01-27 3.6.1
2009-12-21 3.6.0
2008-09-05 3.5.1
2008-07-28 3.5.0
2008-04-09 3.2.3
2008-03-26 3.2.2
2008-03-12 3.2.1
2008-02-11 3.2.0
2007-09-07 3.0.1
2007-07-29 3.0.0
2007-05-03 2.1.0

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Package nFDR (with last version 0.0-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-04-11 0.0-1
2005-06-08 0.0

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Package rrcovHD (with last version 0.2-00) was removed from CRAN

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2012-07-24 0.2-00

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Package steepness (with last version 0.2) was removed from CRAN

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2011-09-02 0.2
2010-03-26 0.1

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Package mpc (with last version 0.1) was removed from CRAN

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2011-08-14 0.1

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Package phitest (with last version 1.0-0) was removed from CRAN

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2010-08-10 1.0-0

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Package sspline (with last version 0.1-5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2007-10-11 0.1-5
2007-09-07 0.1-4
2007-09-05 0.1-3

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Package rPorta (with last version 0.1-9) was removed from CRAN

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2009-03-30 0.1-9
2009-02-03 0.1-8
2009-01-27 0.1-7
2008-08-08 0.1-6
2008-05-20 0.1-5

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Package nltm (with last version 1.4.1) was removed from CRAN

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2010-05-07 1.4.1
2009-02-15 1.4
2007-09-14 1.3
2006-07-24 1.2

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Package Rcpp updated to version 0.10.3 with previous version 0.10.2 dated 2012-12-21

Title: Seamless R and C++ Integration
Description: The Rcpp package provides R functions as well as a C++ library which facilitate the integration of R and C++. R data types (SEXP) are matched to C++ objects in a class hierarchy. All R types are supported (vectors, functions, environment, etc ...) and each type is mapped to a dedicated class. For example, numeric vectors are represented as instances of the Rcpp::NumericVector class, environments are represented as instances of Rcpp::Environment, functions are represented as Rcpp::Function, etc ... The "Rcpp-introduction" vignette provides a good entry point to Rcpp. Conversion from C++ to R and back is driven by the templates Rcpp::wrap and Rcpp::as which are highly flexible and extensible, as documented in the "Rcpp-extending" vignette. Rcpp also provides Rcpp modules, a framework that allows exposing C++ functions and classes to the R level. The "Rcpp-modules" vignette details the current set of features of Rcpp-modules. Rcpp includes a concept called Rcpp sugar that brings many R functions into C++. Sugar takes advantage of lazy evaluation and expression templates to achieve great performance while exposing a syntax that is much nicer to use than the equivalent low-level loop code. The "Rcpp-sugar" vignette gives an overview of the feature. Rcpp attributes provide a high-level syntax for declaring C++ functions as callable from R and automatically generating the code required to invoke them. Attributes are intended to facilitate both interactive use of C++ within R sessions as well as to support R package development. Attributes are built on top of Rcpp modules and their implementation is based on previous work in the inline package. Many examples are included, and over 870 unit tests in over 400 unit test functions provide additional usage examples. An earlier version of Rcpp, containing what we now call the 'classic Rcpp API' was written during 2005 and 2006 by Dominick Samperi. This code has been factored out of Rcpp into the package RcppClassic, and it is still available for code relying on the older interface. New development should always use this Rcpp package instead.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by Douglas Bates, John Chambers and JJ Allaire
Maintainer: Dirk Eddelbuettel

Diff between Rcpp versions 0.10.2 dated 2012-12-21 and 0.10.3 dated 2013-03-23

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New package hcc with initial version 0.54
Package: hcc
Version: 0.54
Date: 2013-03-23
Title: Hidden correlation check
Author: Yun Shi and A. I. McLeod
Maintainer: A. I. McLeod
Depends: R (>= 2.1.0)
Description: A new diagnostic check for model adequacy in regression and generalized linear models is implemented.
LazyLoad: yes
License: GPL (>= 2)
URL: http://www.stats.uwo.ca/faculty/aim
Packaged: 2013-03-23 15:28:32 UTC; Aim
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-03-23 17:01:19

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Package Boruta updated to version 2.0.0 with previous version 1.6 dated 2012-02-22

Title: A wrapper algorithm for all-relevant feature selection
Description: Boruta is an all-relevant feature selection wrapper algorithm. It finds relevant features by comparing original attributes' importance with importance achievable at random, estimated using their permuted copies.
Author: Miron B. Kursa and Witold R. Rudnicki
Maintainer: Miron B. Kursa

Diff between Boruta versions 1.6 dated 2012-02-22 and 2.0.0 dated 2013-03-23

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New package crimCV with initial version 0.9.3
Package: crimCV
Version: 0.9.3
Title: Group-Based Modelling of Longitudinal Data
Author: Jason D. Nielsen
Maintainer: Jason D. Nielsen
Depends: R (>= 2.10.0), splines
Description: This package fits discrete mixtures of Zero-Inflated Poisson (ZIP) models for analyzing criminal trajectories.
License: GPL (>= 2)
Date: March 22, 2013
Packaged: 2013-03-22 20:24:16 UTC; jdn
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-03-23 16:48:42

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Package maxent (with last version 1.3.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-05-22 1.3.2
2011-12-22 1.3.1
2011-12-05 1.3.0
2011-08-02 1.2.1
2011-07-30 1.1
2011-07-30 1.2

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Package kBestShortestPaths (with last version 0.1.2) was removed from CRAN

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2011-11-04 0.1.2
2011-11-02 0.1.1
2011-10-26 0.1

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Package RcmdrPlugin.steepness (with last version 0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-01-24 0.3
2011-09-02 0.2
2010-03-26 0.1

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Package cem (with last version 1.0.142) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-12-24 1.0.142
2009-11-08 1.0.128
2009-11-04 1.0.127
2009-10-21 1.0.117
2009-10-21 1.0.120
2009-10-20 1.0.116
2009-08-31 1.0.111
2009-06-02 1.0.108
2009-05-13 1.0.106
2009-04-14 1.0.96
2009-02-18 1.0.90
2008-10-30 1.0.80
2008-09-02 1.0.44
2008-08-20 1.0.39
2008-08-20 1.0.41

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Package calibFit (with last version 2.1.0) was removed from CRAN

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2011-11-03 2.1.0

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Package RTextTools (with last version 1.4.1) was removed from CRAN

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2013-03-06 1.4.1
2012-09-23 1.4.0
2012-08-15 1.3.9
2012-05-13 1.3.8
2012-04-03 1.3.7
2012-02-01 1.3.6
2012-01-16 1.3.5
2012-01-11 1.3.4
2012-01-08 1.3.3
2011-12-05 1.3.2
2011-08-23 1.3.1
2011-08-21 1.3
2011-08-16 1.2

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Package gcolor (with last version 1.0) was removed from CRAN

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2009-10-30 1.0

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Package cems (with last version 0.1) was removed from CRAN

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2011-11-13 0.1
2011-03-26 0.0

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Package dlm (with last version 1.1-2) was removed from CRAN

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2010-10-05 1.1-2
2010-04-13 1.1-1
2010-02-15 1.1-0
2009-06-16 1.0-2
2009-05-27 1.0-1
2009-04-15 1.0-0
2009-01-14 0.99-0
2008-06-01 0.9-1
2007-11-20 0.8-1
2006-08-25 0.7-1

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Package hergm (with last version 1.3-5) was removed from CRAN

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2011-08-21 1.3-5
2011-03-29 1.3-4
2011-02-08 1.3-3
2011-02-03 1.3-2
2011-01-28 1.3-1
2010-12-12 1.2-10
2010-12-07 1.2-9
2010-08-13 1.2-8
2010-07-31 1.2-7
2010-07-24 1.2-6
2010-07-03 1.2-5
2010-06-22 1.2-4
2010-06-16 1.2-3
2010-06-10 1.2-2
2010-06-01 1.2-1
2010-03-13 1.1-1
2010-03-11 1.1
2010-02-21 1.0

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Package RandForestGUI (with last version 1.0) was removed from CRAN

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2010-08-27 1.0

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Package LS2W (with last version 1.3) was removed from CRAN

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2011-07-24 1.3
2011-04-23 1.2
2010-11-08 1.1
2010-05-30 1.0

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Package BAMD (with last version 3.5) was removed from CRAN

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2011-07-23 3.5
2011-02-19 3.4
2010-04-25 3.3.1
2009-10-29 3.3
2009-10-18 3.1
2009-04-21 1.2

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Package boolean (with last version 2.0-2) was removed from CRAN

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2010-01-24 2.0-2
2009-09-04 2.0-1
2009-08-31 2.0-0
2009-02-23 1.1-2.1
2007-01-15 1.1-2

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Package RMediation (with last version 1.1) was removed from CRAN

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2011-10-10 1.1
2011-02-08 1.0

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Package bayespack (with last version 1.0-2) was removed from CRAN

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2011-02-19 1.0-2
2011-02-17 1.0-1

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Package AMA (with last version 1.0.8) was removed from CRAN

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2012-07-02 1.0.8

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Package RnavGraphImageData (with last version 0.0.2) was removed from CRAN

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2011-11-21 0.0.2
2011-05-29 0.0.1

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Package RnavGraph (with last version 0.1.4) was removed from CRAN

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2012-06-26 0.1.4
2012-04-23 0.1.3
2012-02-17 0.1.2
2011-11-22 0.1.1
2011-11-21 0.1.0
2011-06-15 0.0.9
2011-05-29 0.0.8

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Package AGSDest (with last version 2.0) was removed from CRAN

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2012-12-04 2.0

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Package SemiPar updated to version 1.0-4 with previous version 1.0-3 dated 2010-04-17

Title: Semiparametic Regression
Description: Functions for semiparametric regression analysis, to complement the book: Ruppert, D., Wand, M.P. and Carroll, R.J. (2003). Semiparametric Regression. Cambridge University Press.
Author: Matt Wand
Maintainer: ORPHANED

Diff between SemiPar versions 1.0-3 dated 2010-04-17 and 1.0-4 dated 2013-03-23

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 SemiPar-1.0-4/SemiPar/R/default.knots.2D.r        |   17 +-
 SemiPar-1.0-4/SemiPar/R/set.plot.dflts.r          |   46 +++---
 SemiPar-1.0-4/SemiPar/R/spm.r                     |  164 ++++++++++------------
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Package lpSolve updated to version 5.6.7 with previous version 5.6.6 dated 2011-04-26

Title: Interface to Lp_solve v. 5.5 to solve linear/integer programs
Description: Lp_solve is freely available (under LGPL 2) software for solving linear, integer and mixed integer programs. In this implementation we supply a "wrapper" function in C and some R functions that solve general linear/integer problems, assignment problems, and transportation problems. This version calls lp_solve version 5.5.
Author: Michel Berkelaar and others
Maintainer: ORPHANED

Diff between lpSolve versions 5.6.6 dated 2011-04-26 and 5.6.7 dated 2013-03-23

 DESCRIPTION     |   12 ++++++---
 MD5             |only
 src/colamd.c    |    3 +-
 src/commonlib.c |    8 ++++--
 src/hbio.c      |   70 ++++++++++++++++++++++++++++----------------------------
 src/lp_lib.c    |    2 -
 src/lp_report.c |    8 ++++--
 src/lusol.c     |    2 -
 src/lusolio.c   |   29 ++++++++++++-----------
 src/mmio.c      |   12 +++++----
 src/sparselib.c |   16 ++++++------
 11 files changed, 89 insertions(+), 73 deletions(-)

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New package CondReg with initial version 0.15
Package: CondReg
Title: Condition Number Regularized Covariance Estimation
Version: 0.15
Author: Sang-Yun Oh , Bala Rajaratnam , Joong-Ho Won
Maintainer: Sang-Yun Oh
Description: Based on \url{http://statistics.stanford.edu/~ckirby/techreports/GEN/2012/2012-10.pdf}
License: GPL-3
Collate: 'condreg.R'
Packaged: 2013-03-23 06:17:43 UTC; sangoh
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-03-23 08:30:14

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New package repmis with initial version 0.2.3
Package: repmis
Type: Package
Title: A collection of miscellaneous tools for reproducible research with R.
Description: A collection of miscellaneous tools for reproducible research with R. Currently the package includes tools to load R packages and automatically generate BibTeX files citing them as well as load plain-text data stored on GitHub.
Version: 0.2.3
Date: 2013-03-13
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
License: GPL (>= 2)
Depends: R (>= 2.15.2)
URL: https://github.com/christophergandrud/repmis
BugReports: https://github.com/christophergandrud/repmis/issues
Imports: knitr, httr, plyr
Collate: 'InstallOldPackages.R' 'LoadandCite.R' 'source_data.R' 'source_GitHubData.R'
Packaged: 2013-03-23 01:40:58 UTC; christophergandrud
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-03-23 06:21:11

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New package RcmdrPlugin.MA with initial version 0.0-1
Package: RcmdrPlugin.MA
Type: Package
Title: Graphical User Interface for Conducting Meta-Analyses in R
Version: 0.0-1
Date: 2013-03-23
Author: AC Del Re
Maintainer: AC Del Re
Description: This is an R-Commander plug-in for meta-analysis. This package enables the user to conduct a meta-analysis in a menu-driven, graphical user interface environment (e.g., SPSS). It uses recommended procedures as described in The Handbook of Research Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine, 2009).
Depends: R (>= 2.15), MAd, metafor
Imports: Rcmdr
Enhances: compute.es, ggplot2
License: GPL-2
RcmdrModels: mareg, macat, rma
URL: http://rwiki.sciviews.org/doku.php?id=packages:cran:ma_meta-analysis
Packaged: 2013-03-22 19:59:56 UTC; AC Del Re
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-03-23 06:30:48

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