Title: Interface between GRASS 6+ geographical information system and R
Diff between spgrass6 versions 0.7-15 dated 2013-02-10 and 0.8-1 dated 2013-05-02
Description: Interpreted interface between GRASS 6+ geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Author: Roger Bivand [cre, aut], Rainer Krug [ctb], Markus Neteler
[ctb]
Maintainer: Roger Bivand
ChangeLog | 64 ++++++++++++++++++++++
DESCRIPTION | 11 ++-
MD5 | 28 ++++-----
NAMESPACE | 5 +
R/AAA.R | 5 +
R/bin_link.R | 32 +++++++++--
R/options.R | 57 ++++++++++++++++++-
R/spgrass6.R | 14 ++++
R/vect_link.R | 42 ++++++++++++++
R/xml1.R | 132 ++++++++++++++++++++++++++++++++++++++++------
inst/ChangeLog | 64 ++++++++++++++++++++++
inst/doc/spgrass6_0.3.pdf |binary
man/execGRASS.Rd | 27 ++++++---
man/gmeta6.Rd | 18 +++++-
man/initGRASS.Rd | 2
15 files changed, 447 insertions(+), 54 deletions(-)
Title: Interface to Geometry Engine - Open Source (GEOS)
Diff between rgeos versions 0.2-16 dated 2013-04-09 and 0.2-17 dated 2013-05-02
Description: Interface to Geometry Engine - Open Source (GEOS) using
the C API for topology operations on geometries. The GEOS
library is external to the package, and, when installing the
package from source, must be correctly installed first. Windows
and Mac Intel OS X binaries are provided on CRAN.
Author: Roger Bivand [cre, aut], Colin Rundel [aut], Edzer Pebesma
[ctb], Karl Ove Hufthammer [ctb]
Maintainer: Roger Bivand
ChangeLog | 13
DESCRIPTION | 10
MD5 | 12
configure | 5015 ++++++++++++++++++++++++-------------------------------
configure.ac | 6
inst/ChangeLog | 13
inst/SVN_VERSION | 2
7 files changed, 2280 insertions(+), 2791 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.8-8 dated 2013-04-22 and 0.8-9 dated 2013-05-02
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.6.3) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and
Expat) are provided on CRAN.
Author: Roger Bivand [cre, aut], Tim Keitt [aut], Barry Rowlingson
[aut], Edzer Pebesma [ctb], Michael Sumner [ctb], Robert
Hijmans [ctb]
Maintainer: Roger Bivand
ChangeLog | 29 +++++++++++++++++++++++++++++
DESCRIPTION | 12 ++++++------
MD5 | 18 +++++++++---------
R/ogr_write.R | 11 +++++++++--
configure | 28 ++++++++++++++--------------
configure.ac | 6 +++---
inst/ChangeLog | 29 +++++++++++++++++++++++++++++
inst/SVN_VERSION | 2 +-
inst/doc/OGR_shape_encoding.pdf |binary
src/OGR_write.cpp | 36 +++++++++++++++++++++++++++++++++++-
10 files changed, 135 insertions(+), 36 deletions(-)
Title: Fitting finite mixture of scale mixture of skew-normal
distributions .
Diff between mixsmsn versions 1.0-6 dated 2013-03-20 and 1.0-7 dated 2013-05-02
Description: Functions to fit finite mixture of scale mixture of
skew-normal (FM-SMSN) distributions.
Author: Marcos Prates
Maintainer: Marcos Prates
DESCRIPTION | 6 +++---
MD5 | 6 +++---
R/mixsmsn.R | 2 +-
R/smsn.mmix.R | 4 ++--
4 files changed, 9 insertions(+), 9 deletions(-)
Title: Baseline Correction of Spectra
Diff between baseline versions 1.1-1 dated 2013-03-27 and 1.1-2 dated 2013-05-02
Description: Collection of baseline correction algorithms, along with a
framework and a GUI for optimising baseline algorithm
parameters.
Author: Kristian Hovde Liland and Bjørn-Helge Mevik
Maintainer: Kristian Hovde Liland
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NEWS | 4 ++++
R/baselineGUI.R | 2 +-
4 files changed, 12 insertions(+), 8 deletions(-)
Title: A package for variogram diagnostics
Diff between vardiag versions 0.1-5 dated 2012-01-03 and 0.2-0 dated 2013-05-02
Description: This package allows interactive variogram diagnostics.
Author: Ernst Glatzer
Maintainer: Edzer Pebesma
DESCRIPTION | 9 -
MD5 | 10 -
NAMESPACE | 1
R/VARDIAG.R | 384 +++++++++++++++++++++++++------------------------
man/PlotDiag.varobj.Rd | 2
man/interact.varobj.Rd | 2
6 files changed, 213 insertions(+), 195 deletions(-)
Title: Estimation of Distribution Algorithms Based on Copulas
Diff between copulaedas versions 1.2.1 dated 2013-01-11 and 1.3.0 dated 2013-05-02
Description: This package intends to provide a platform where EDAs
(Estimation of Distribution Algorithms) based on copulas can be
implemented and studied. It contains complete implementations
of various EDAs based on copulas and vines and also offers the
possibility of implementing new algorithms that can be
integrated into the package. EDAs are implemented using S4
classes with generic functions for its main parts: seeding,
selection, learning, sampling, replacement, local optimization,
termination, and reporting. The package also provides a group
of well-known benchmark problems and utility functions to study
the behavior of EDAs.
Author: Yasser Gonzalez-Fernandez
Maintainer: Yasser Gonzalez-Fernandez
DESCRIPTION | 18 ++++-----
MD5 | 68 +++++++++++++++++------------------
NEWS | 22 +++++++----
R/CEDA.R | 8 ++--
R/EDA.R | 4 +-
R/VEDA.R | 14 ++++---
R/edaCriticalPopSize.R | 4 +-
R/edaIndepRuns.R | 4 +-
R/edaOptimize.R | 4 +-
R/edaReplace.R | 16 ++++----
R/edaReport.R | 4 +-
R/edaRun.R | 4 +-
R/edaSeed.R | 4 +-
R/edaSelect.R | 4 +-
R/edaTerminate.R | 4 +-
R/margins.R | 4 +-
R/problems.R | 4 +-
inst/CITATION | 8 ++--
inst/doc/copulaedas-manual.pdf |binary
man/CEDA-class.Rd | 20 +++++-----
man/EDA-class.Rd | 4 +-
man/EDAResult-class.Rd | 4 +-
man/EDAResults-class.Rd | 4 +-
man/VEDA-class.Rd | 78 ++++++++++++++++++++++++++---------------
man/edaCriticalPopSize.Rd | 8 ++--
man/edaIndepRuns.Rd | 6 ++-
man/edaOptimize.Rd | 6 ++-
man/edaReplace.Rd | 4 +-
man/edaReport.Rd | 4 +-
man/edaRun.Rd | 12 +++---
man/edaSeed.Rd | 4 +-
man/edaSelect.Rd | 4 +-
man/edaTerminate.Rd | 2 -
man/margins.Rd | 6 ++-
man/problems.Rd | 16 ++++----
35 files changed, 220 insertions(+), 160 deletions(-)
Title: Analyzing case-parent triad and/or case-control data with SNP
haplotypes
Diff between Haplin versions 5.0.2 dated 2013-03-18 and 5.2 dated 2013-05-02
Description: Haplin performs a genetic association analysis of
case-parent triad (trio) data with multiple markers. It can
also incorporate complete or incomplete control triads, for
instance independent control children. Estimation is based on
haplotypes, for instance SNP haplotypes, even though phase is
not known from the genetic data. Haplin estimates relative risk
(RR + conf.int.) and p-value associated with each haplotype. It
uses maximum likelihood estimation to make optimal use of data
from triads with missing genotypic data, for instance if some
SNPs has not been typed for some individuals. Haplin also
allows estimation of effects of maternal haplotypes and
parent-of-origin effects, particularly appropriate in perinatal
epidemiology. Haplin allows special models, like
X-inactivation, to be fitted on the X-chromosome.
Author: Hakon K. Gjessing
Maintainer: Hakon K. Gjessing
DESCRIPTION | 8 ++++----
MD5 | 23 +++++++++++++++--------
NAMESPACE | 4 ++--
R/convertPed.R |only
R/f.make.design.R | 13 +------------
R/haplin.R | 2 +-
R/haplinSlide.R | 29 +++++++++++++++++++++++++++--
R/lineByLine.R |only
R/lineConvert.R |only
R/print.summary.tri.glm.R | 2 +-
R/snpPos.R |only
inst/doc/Haplin_data_format.pdf |binary
man/convertPed.Rd |only
man/lineByLine.Rd |only
man/snpPos.Rd |only
man/suest.Rd | 2 +-
16 files changed, 52 insertions(+), 31 deletions(-)
Title: CLAG: an unsupervised non hierarchical clustering algorithm
handling biological data
Diff between CLAG versions 2.7 dated 2013-04-30 and 2.10 dated 2013-05-02
Description: CLAG (for CLusters AGgregation) is an unsupervised non
hierarchical clustering algorithm designed to cluster a large
variety of biological data and to provide a clustered matrix
and numerical values indicating cluster strength. CLAG
clusterizes correlation matrices for residues in protein
families, gene-expression and miRNA data related to various
cancer types, sets of species described by multidimensional
vectors of characters, binary matrices. It does not ask to all
data points to cluster and it converges yielding the same
result at each run. Its simplicity and speed allows it to run
on reasonably large datasets.
Author: Linda DIB, Raphael CHAMPEIMONT, Alessandra CARBONE
Maintainer: Raphael CHAMPEIMONT
CLAG-2.10/CLAG/DESCRIPTION | 12 +++++-------
CLAG-2.10/CLAG/LICENSE |only
CLAG-2.10/CLAG/MD5 | 28 ++++++++++++++++------------
CLAG-2.10/CLAG/NAMESPACE | 1 -
CLAG-2.10/CLAG/NEWS | 7 +++++++
CLAG-2.10/CLAG/R/CLAG.R | 18 ++++++++++++------
CLAG-2.10/CLAG/data |only
CLAG-2.10/CLAG/inst/doc/CLAG-tutorial.Rnw | 10 +++++-----
CLAG-2.10/CLAG/inst/doc/CLAG-tutorial.pdf |binary
CLAG-2.10/CLAG/man/BREAST.Rd |only
CLAG-2.10/CLAG/man/CLAG.clust.Rd | 8 ++++----
CLAG-2.10/CLAG/man/DIM128.Rd |only
CLAG-2.10/CLAG/man/DIM128_subset.Rd |only
CLAG-2.10/CLAG/man/GLOBINE.Rd |only
CLAG-2.7/CLAG/inst/extdata |only
CLAG-2.7/CLAG/man/CLAG.loadExampleData.Rd |only
16 files changed, 49 insertions(+), 35 deletions(-)
Title: Wavelets statistics and transforms.
Diff between wavethresh versions 4.6.3 dated 2013-04-30 and 4.6.4 dated 2013-05-02
Description: Performs 1, 2 and 3D real and complex-valued wavelet
transforms, nondecimated transforms, wavelet packet transforms,
nondecimated wavelet packet transforms, multiple wavelet
transforms, complex-valued wavelet transforms, wavelet
shrinkage for various kinds of data, locally stationary wavelet
time series, nonstationary multiscale transfer function
modeling, density estimation.
Author: Guy Nason
Maintainer: Guy Nason
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/function.r | 5 +++--
inst/CHANGES | 5 +++++
man/filter.select.rd | 28 ++++++++++++++++++++++++++--
5 files changed, 42 insertions(+), 12 deletions(-)
Title: Robust methods for high-dimensional data
Diff between robustHD versions 0.3.1 dated 2013-04-16 and 0.3.2 dated 2013-05-02
Description: Robust methods for high-dimensional data, in particular
linear model selection techniques based on least angle
regression and sparse regression.
Author: Andreas Alfons [aut, cre]
Maintainer: Andreas Alfons
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 5 +++++
R/sparseLTS.R | 9 ++++-----
man/robustHD-package.Rd | 4 ++--
5 files changed, 19 insertions(+), 15 deletions(-)
Title: Testing of multiple outcomes
Diff between multmod versions 0.9 dated 2011-10-08 and 1.0 dated 2013-05-02
Description: Testing of multiple outcomes using i.i.d. decompositions
Author: Christian B. Pipper
Maintainer: Christian B. Pipper
DESCRIPTION | 13 +++++++------
MD5 | 8 ++++----
NEWS | 3 ++-
inst/CITATION | 15 ++++++++-------
inst/LICENCE | 2 +-
5 files changed, 22 insertions(+), 19 deletions(-)
Title: Miscellaneous helper functions for B. Bischl.
Diff between BBmisc versions 1.1-166 dated 2012-11-16 and 1.2-200 dated 2013-05-02
Description: Miscellaneous helper functions for and from B. Bischl and
some other guys at TU Dortmund, mainly for package development.
Author: Bernd Bischl
Maintainer: Bernd Bischl
DESCRIPTION | 30 +++++++++++++-------------
MD5 | 46 ++++++++++++++++++++++++----------------
NAMESPACE | 8 +++++-
NEWS | 12 ++++++++++
R/argsAsNamedList.R |only
R/checkArg.R | 34 +++++++++++++++--------------
R/convertDfCols.R |only
R/lib.R |only
R/makeProgressBar.R | 3 --
R/names2.R |only
R/parallel.R | 21 ++++++++++++------
R/save2.R | 23 ++------------------
R/splitTime.R | 18 ++++++++-------
R/warningf.R | 7 ++++--
inst/tests/test_checkArg.R | 31 +++++++++++++++++++++++++-
inst/tests/test_convertDfCols.R |only
inst/tests/test_parallel.R | 15 +++++++++++++
inst/tests/test_splitTime.R | 5 +++-
man/argsAsNamedList.Rd |only
man/checkArg.Rd | 14 ++++++------
man/convertDfCols.Rd |only
man/lib.Rd |only
man/makeProgressBar.Rd | 5 +---
man/names2.Rd |only
man/parallelMap.Rd | 12 ++++++++--
man/parallelStart.Rd | 9 ++++---
man/save2.Rd | 9 ++++---
man/splitTime.Rd | 8 +++---
skel.Rproj |only
29 files changed, 195 insertions(+), 115 deletions(-)
Title: Methods that apply to rows and columns of a matrix
Diff between matrixStats versions 0.8.0 dated 2013-05-02 and 0.8.1 dated 2013-05-02
Description: This packages provides methods operating on rows and
columns of matrices, e.g. col/rowMedians() and col/rowRanks().
There are also some vector-based methods, e.g. anyMissing(),
weightedMedians(), and binMeans(). The objective is to have
all methods being optimized for speed and memory consumption.
Author: Henrik Bengtsson, Hector Corrada Bravo, Robert Gentleman, Ola
Hossjer, Harris Jaffee, Peter Langfelder
Maintainer: Henrik Bengtsson
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
inst/NEWS | 6 ++++++
src/logSumExp.c | 11 +++--------
4 files changed, 16 insertions(+), 15 deletions(-)
Title: Flexible regression models for survival data.
Diff between timereg versions 1.7.4 dated 2013-04-30 and 1.7.5 dated 2013-05-02
Description: Programs for Martinussen and Scheike (2006), `Dynamic
Regression Models for Survival Data', Springer Verlag. Plus
more recent developments. Additive survival model,
semiparametric proportional odds model, cumulative residuals,
excess risk models and more. Flexible competing risks
regression including GOF-tests. Two-stage frailty modelling.
PLS for the additive risk model. Lasso in ahaz package.
Author: Thomas Scheike with contributions from Torben Martinussen and
Jeremy Silver
Maintainer: Thomas Scheike
DESCRIPTION | 6 +++---
MD5 | 6 +++---
R/predict-timereg.r | 7 ++++++-
man/comp.risk.Rd | 5 +++++
4 files changed, 17 insertions(+), 7 deletions(-)
Title: Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Diff between spcosa versions 0.3-4 dated 2013-04-29 and 0.3-5 dated 2013-05-02
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means.
Author: Dennis Walvoort [aut, cre, cph], Dick Brus [aut, cph], Jaap de
Gruijter [aut, cph]
Maintainer: Dennis Walvoort
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/method_stratify-SpatialPixels.R | 2 +-
R/methods_spsample.R | 2 +-
build/spcosa.pdf |binary
inst/NEWS.Rd | 10 ++++++++--
inst/doc/spcosa.pdf |binary
tests/unitTesting.html | 6 +++---
8 files changed, 24 insertions(+), 18 deletions(-)
Title: Fitting right or left censored regression model under the scale
mixture of normal distributions.
Diff between SMNCensReg versions 1.0 dated 2013-04-22 and 2.0 dated 2013-05-02
Description: Fit univariate right or left censored regression model
under the scale mixture of normal distributions.
Author: Aldo M. Garay
Maintainer: Aldo M. Garay
SMNCensReg-1.0/SMNCensReg/desktop.ini |only
SMNCensReg-2.0/SMNCensReg/DESCRIPTION | 14 +--
SMNCensReg-2.0/SMNCensReg/MD5 | 13 +--
SMNCensReg-2.0/SMNCensReg/R/CensRegSMN.r | 6 -
SMNCensReg-2.0/SMNCensReg/R/EM_SMN.r | 110 ++++++++++++++-------------
SMNCensReg-2.0/SMNCensReg/R/Utilitarios.r | 2
SMNCensReg-2.0/SMNCensReg/man/CensReg.SMN.Rd | 51 ++++++------
SMNCensReg-2.0/SMNCensReg/man/wage.rates.Rd | 10 --
8 files changed, 107 insertions(+), 99 deletions(-)
Title: Expected gain from multi-stage selection and its optimization
Diff between selectiongain versions 2.0.1 dated 2012-07-12 and 2.0.6 dated 2013-05-02
Description: A tool for efficient calculation and optimization of the
expected gain from multi-stage selection
Author: Xuefei Mi, H. Friedrich Utz, Albrecht E. Melchinger (Project
contact person: Melchinger at uni-hohenheim.de )
Maintainer: Xuefei Mi
selectiongain-2.0.1/selectiongain/LICENSE |only
selectiongain-2.0.6/selectiongain/DESCRIPTION | 33
selectiongain-2.0.6/selectiongain/MD5 | 35
selectiongain-2.0.6/selectiongain/R/multistagecor.R | 197 +---
selectiongain-2.0.6/selectiongain/R/multistagegain.R | 185 +---
selectiongain-2.0.6/selectiongain/R/multistagegain.each.R | 35
selectiongain-2.0.6/selectiongain/R/multistageoptimal.grid.R | 452 ++++------
selectiongain-2.0.6/selectiongain/R/multistageoptimal.nlm.R | 105 --
selectiongain-2.0.6/selectiongain/R/multistageoptimal.pb.R | 340 +++----
selectiongain-2.0.6/selectiongain/R/multistagetp.R | 104 +-
selectiongain-2.0.6/selectiongain/R/multistagevariance.R | 322 ++-----
selectiongain-2.0.6/selectiongain/man/multistagecor.Rd | 54 -
selectiongain-2.0.6/selectiongain/man/multistagegain.Rd | 68 -
selectiongain-2.0.6/selectiongain/man/multistagegain.each.Rd | 38
selectiongain-2.0.6/selectiongain/man/multistageoptimal.grid.Rd | 104 +-
selectiongain-2.0.6/selectiongain/man/multistageoptimal.nlm.Rd | 64 -
selectiongain-2.0.6/selectiongain/man/multistageoptimal.pb.Rd | 99 +-
selectiongain-2.0.6/selectiongain/man/multistagetp.Rd | 55 -
selectiongain-2.0.6/selectiongain/man/multistagevariance.Rd | 56 -
19 files changed, 1080 insertions(+), 1266 deletions(-)
Title: Reversal Association Pattern
Diff between RAP versions 1.0 dated 2013-04-21 and 1.1 dated 2013-05-02
Description: To find the reversal association between variables.
Author: U.Sangeetha, M.Subbiah with considerable contribution from
M.R.Srinivasan
Maintainer: U.Sangeetha
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/fnRAP.R | 2 +-
3 files changed, 6 insertions(+), 6 deletions(-)
Title: Dose-finding in drug combination Phase I trials using the
partial order continual reassessment method (PO-CRM).
Diff between pocrm versions 0.4 dated 2013-03-28 and 0.5 dated 2013-05-02
Description: This package provides functions to implement and simulate
the partial order continual reassessment method (PO-CRM) for
use in Phase I trials of combinations of agents. It also
provides a function for generating a set of initial guesses
(skeleton) for the toxicity probabilities at each combination
that correspond to the set of possible orderings of the
toxicity probabilities specified by the user.
Author: Nolan A. Wages
Maintainer: Varhegyi, Nikole (nev4g)
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/pocrm.imp.R | 2 +-
R/pocrm.sim.R | 2 +-
4 files changed, 9 insertions(+), 9 deletions(-)
Title: Methods that apply to rows and columns of a matrix
Diff between matrixStats versions 0.6.2 dated 2012-11-16 and 0.8.0 dated 2013-05-02
Description: This packages provides methods operating on rows and
columns of matrices, e.g. col/rowMedians() and col/rowRanks().
There are also some vector-based methods, e.g. anyMissing(),
weightedMedians(), and binMeans(). The objective is to have
all methods being optimized for speed and memory consumption.
Author: Henrik Bengtsson, Hector Corrada Bravo, Robert Gentleman, Ola
Hossjer, Harris Jaffee, Peter Langfelder
Maintainer: Henrik Bengtsson
matrixStats-0.6.2/matrixStats/incl |only
matrixStats-0.8.0/matrixStats/DESCRIPTION | 29
matrixStats-0.8.0/matrixStats/MD5 | 156 ++--
matrixStats-0.8.0/matrixStats/NAMESPACE | 31
matrixStats-0.8.0/matrixStats/R/999.package.R | 10
matrixStats-0.8.0/matrixStats/R/anyMissing.R | 19
matrixStats-0.8.0/matrixStats/R/binCounts.R | 8
matrixStats-0.8.0/matrixStats/R/indexByRow.R | 8
matrixStats-0.8.0/matrixStats/R/logSumExp.R |only
matrixStats-0.8.0/matrixStats/R/rowAvgsPerColSet.R | 12
matrixStats-0.8.0/matrixStats/R/rowCollapse.R | 18
matrixStats-0.8.0/matrixStats/R/rowCounts.R | 20
matrixStats-0.8.0/matrixStats/R/rowDiffs.R | 8
matrixStats-0.8.0/matrixStats/R/rowIQRs.R | 8
matrixStats-0.8.0/matrixStats/R/rowLogSumExps.R |only
matrixStats-0.8.0/matrixStats/R/rowMedians.R | 18
matrixStats-0.8.0/matrixStats/R/rowOrderStats.R | 18
matrixStats-0.8.0/matrixStats/R/rowProds.R | 12
matrixStats-0.8.0/matrixStats/R/rowQuantiles.R | 18
matrixStats-0.8.0/matrixStats/R/rowRanges.R | 25
matrixStats-0.8.0/matrixStats/R/rowRanks.R | 121 ++-
matrixStats-0.8.0/matrixStats/R/rowSds.R | 10
matrixStats-0.8.0/matrixStats/R/rowTabulates.R | 24
matrixStats-0.8.0/matrixStats/R/rowVars.R | 12
matrixStats-0.8.0/matrixStats/R/rowWeightedMeans.matrix.R | 12
matrixStats-0.8.0/matrixStats/R/rowWeightedMedians.matrix.R | 8
matrixStats-0.8.0/matrixStats/R/varDiff.R | 14
matrixStats-0.8.0/matrixStats/R/weightedMad.R | 14
matrixStats-0.8.0/matrixStats/R/weightedMedian.R | 2
matrixStats-0.8.0/matrixStats/inst/NEWS | 59 +
matrixStats-0.8.0/matrixStats/man/anyMissing.Rd | 113 +--
matrixStats-0.8.0/matrixStats/man/binCounts.Rd | 94 +-
matrixStats-0.8.0/matrixStats/man/binMeans.Rd | 156 ++--
matrixStats-0.8.0/matrixStats/man/indexByRow.Rd | 110 +--
matrixStats-0.8.0/matrixStats/man/logSumExp.Rd |only
matrixStats-0.8.0/matrixStats/man/matrixStats-package.Rd | 194 ++---
matrixStats-0.8.0/matrixStats/man/rowAvgsPerColSet.matrix.Rd | 264 +++----
matrixStats-0.8.0/matrixStats/man/rowCollapse.Rd | 130 +--
matrixStats-0.8.0/matrixStats/man/rowCounts.Rd | 158 ++--
matrixStats-0.8.0/matrixStats/man/rowDiffs.Rd | 94 +-
matrixStats-0.8.0/matrixStats/man/rowIQRs.Rd | 136 +--
matrixStats-0.8.0/matrixStats/man/rowLogSumExps.Rd |only
matrixStats-0.8.0/matrixStats/man/rowMedians.Rd | 126 +--
matrixStats-0.8.0/matrixStats/man/rowOrderStats.Rd | 138 +--
matrixStats-0.8.0/matrixStats/man/rowProds.Rd | 102 +-
matrixStats-0.8.0/matrixStats/man/rowQuantiles.Rd | 144 ++--
matrixStats-0.8.0/matrixStats/man/rowRanges.Rd | 143 ++-
matrixStats-0.8.0/matrixStats/man/rowRanks.Rd | 184 ++---
matrixStats-0.8.0/matrixStats/man/rowSds.Rd | 118 +--
matrixStats-0.8.0/matrixStats/man/rowTabulates.Rd | 118 +--
matrixStats-0.8.0/matrixStats/man/rowVars.Rd | 212 ++---
matrixStats-0.8.0/matrixStats/man/rowWeightedMeans.matrix.Rd | 192 ++---
matrixStats-0.8.0/matrixStats/man/rowWeightedMedians.matrix.Rd | 192 ++---
matrixStats-0.8.0/matrixStats/man/varDiff.Rd | 116 +--
matrixStats-0.8.0/matrixStats/man/weightedMad.Rd | 174 ++--
matrixStats-0.8.0/matrixStats/man/weightedMedian.Rd | 358 +++++-----
matrixStats-0.8.0/matrixStats/src/binCounts.c | 22
matrixStats-0.8.0/matrixStats/src/binMeans.c | 32
matrixStats-0.8.0/matrixStats/src/logSumExp.c |only
matrixStats-0.8.0/matrixStats/src/rowMedians.c | 357 ---------
matrixStats-0.8.0/matrixStats/src/rowMedians_TYPE-template.h |only
matrixStats-0.8.0/matrixStats/src/rowOrderStats.c | 95 --
matrixStats-0.8.0/matrixStats/src/rowOrderStats_TYPE-template.h |only
matrixStats-0.8.0/matrixStats/src/rowRanks.c | 173 ----
matrixStats-0.8.0/matrixStats/src/rowRanks_Integer.c |only
matrixStats-0.8.0/matrixStats/src/rowRanks_Real.c |only
matrixStats-0.8.0/matrixStats/src/rowRanks_TYPE_TIES-template.h |only
matrixStats-0.8.0/matrixStats/src/rowRanks_TYPE_TIES.c |only
matrixStats-0.8.0/matrixStats/src/templates-types.h |only
matrixStats-0.8.0/matrixStats/src/templates-types_undef.h |only
matrixStats-0.8.0/matrixStats/tests/anyMissing.R |only
matrixStats-0.8.0/matrixStats/tests/binMeans,binCounts.R | 58 -
matrixStats-0.8.0/matrixStats/tests/logSumExp.R |only
matrixStats-0.8.0/matrixStats/tests/rowLogSumExps.R |only
matrixStats-0.8.0/matrixStats/tests/rowMads.R | 4
matrixStats-0.8.0/matrixStats/tests/rowMedians.R | 13
matrixStats-0.8.0/matrixStats/tests/rowOrderStats.R | 8
matrixStats-0.8.0/matrixStats/tests/rowRanges.R | 8
matrixStats-0.8.0/matrixStats/tests/rowRanks,ties.R |only
matrixStats-0.8.0/matrixStats/tests/rowRanks.R | 15
matrixStats-0.8.0/matrixStats/tests/rowTabulates.R |only
matrixStats-0.8.0/matrixStats/tests/rowWeightedMeans.R | 4
matrixStats-0.8.0/matrixStats/tests/rowWeightedMedians.R | 4
83 files changed, 2483 insertions(+), 2770 deletions(-)