Title: Software tools for the Statistical Analysis of Network Data
Diff between statnet versions 3.0-1 dated 2012-07-16 and 3.1-0 dated 2013-05-13
Description: An integrated set of tools for the representation,
visualization, analysis, and simulation of network data. For an
introduction, type help(package='statnet')
Author: Mark S. Handcock [aut], David R. Hunter [aut], Carter T. Butts
[aut], Steven M. Goodreau [aut], Pavel N. Krivitsky [aut, cre],
Martina Morris [aut]
Maintainer: Pavel N. Krivitsky
DESCRIPTION | 38 ++++---
DESCRIPTION.orig |only
DESCRIPTION.rej |only
LICENSE | 2
MD5 | 16 +--
R/onAttach.R | 10 --
R/update_statnet.R | 38 -------
inst/CITATION | 44 +++------
man/statnet-package.Rd | 237 ++++++++++++++++++++++---------------------------
man/update_statnet.Rd | 49 ++++------
10 files changed, 183 insertions(+), 251 deletions(-)
Title: Multi-States Semi-Markov Models
Diff between SemiMarkov versions 1.1 dated 2013-03-25 and 1.2 dated 2013-05-13
Description: Functions for fitting multi-state semi-Markov models to
longitudinal data. A parametric maximum likelihood estimation
method adapted to deal with Exponential, Weibull and
Exponentiated Weibull distributions is considered.
Right-censoring can be taken into account and both constant and
time-varying covariates can be included using a Cox
proportional model.
Author: Agnieszka Listwon, Philippe Saint-Pierre
Maintainer: Agnieszka Listwon
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
data/asthma.rda |binary
man/semiMarkov.Rd | 6 ++++--
4 files changed, 11 insertions(+), 9 deletions(-)
Title: Event History Analysis
Diff between eha versions 2.2-3 dated 2013-04-18 and 2.2-5 dated 2013-05-13
Description: Event history analysis: Sampling of risk sets in Cox
regression, selections in the Lexis diagram, bootstrapping.
Parametric proportional hazards fitting with left truncation
and right censoring for common families of distributions,
piecewise constant hazards, and discrete models. AFT regression
for left truncated and right censored data. Binary and Poisson
regression for clustered data, fixed and random effects with
bootstrapping.
Author: Göran Broström
Maintainer: Göran Broström
eha-2.2-3/eha/R/gompstart.R |only
eha-2.2-3/eha/R/snut.R |only
eha-2.2-5/eha/ChangeLog | 13 +++
eha-2.2-5/eha/DESCRIPTION | 8 -
eha-2.2-5/eha/MD5 | 30 +++----
eha-2.2-5/eha/R/aftp0g.R | 2
eha-2.2-5/eha/R/aftreg.R | 4
eha-2.2-5/eha/R/check.dist.R | 2
eha-2.2-5/eha/R/gompreg.R | 143 ++++++++++++++++++++-------------
eha-2.2-5/eha/R/gompregRate.R |only
eha-2.2-5/eha/R/gompstartAft.R |only
eha-2.2-5/eha/R/gompstartCanonical.R |only
eha-2.2-5/eha/R/gompstartRate.R |only
eha-2.2-5/eha/R/phreg.R | 39 ++++++---
eha-2.2-5/eha/R/plot.phreg.R | 149 +++++++++++++++++------------------
eha-2.2-5/eha/R/print.phreg.R | 23 +++--
eha-2.2-5/eha/man/Gompertz.Rd | 6 -
eha-2.2-5/eha/man/ltx.Rd | 17 ++-
eha-2.2-5/eha/man/phreg.Rd | 9 +-
19 files changed, 265 insertions(+), 180 deletions(-)
Title: High-dimensional Additive Modelling
Diff between hgam versions 0.1-1 dated 2013-02-08 and 0.1-2 dated 2013-05-13
Description: High-dimensional additive models as introduced by Meier,
van der Geer and Buehlmann (2009).
Author: The students of the `Advanced R Programming Course' Hannah
Frick, Ivan Kondofersky, Oliver S. Kuehnle, Christian
Lindenlaub, Georg Pfundstein, Matthias Speidel, Martin
Spindler, Ariane Straub, Florian Wickler, Katharina Zink under
the supervision of Manuel Eugster and Torsten Hothorn
Maintainer: Manuel Eugster
DESCRIPTION | 11
MD5 | 9
R/methods.R | 564 +++++++++++++++----------------
tests/regtest.R | 98 ++---
tests/regtest.Rout.save | 777 +++++++++++++++++++++-----------------------
tests/regtest.Rout.save-old |only
6 files changed, 728 insertions(+), 731 deletions(-)
Title: Time series analysis and computational finance
Diff between tseries versions 0.10-31 dated 2013-04-16 and 0.10-32 dated 2013-05-13
Description: Package for time series analysis and computational finance
Author: Adrian Trapletti [aut], Kurt Hornik [aut, cre], Blake LeBaron
[ctb] (BDS test code)
Maintainer: Kurt Hornik
ChangeLog | 10 ++++++++++
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
R/test.R | 41 ++++++++++++++++++++++-------------------
README | 3 ++-
5 files changed, 41 insertions(+), 27 deletions(-)
Title: Seamless Interface to Octave -- and Matlab
Diff between RcppOctave versions 0.9 dated 2013-03-12 and 0.9.1 dated 2013-05-13
Description: Direct interface to Octave. The primary goal is to
facilitate the port of Matlab/Octave scripts to R. The package
enables to call any Octave functions from R and as well as
browsing their documentation, passing variables between R and
Octave, using R core RNGs in Octave, which ensures that
stochastic computations are also reproducible.
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux
DESCRIPTION | 12 ++++++------
MD5 | 22 ++++++++++++----------
R/interface.R | 2 +-
R/package.R | 7 ++++---
build/RcppOctave.pdf |binary
configure | 22 +++++++++++-----------
configure.in | 2 +-
inst/doc/RcppOctave-unitTests.R |only
inst/doc/RcppOctave-unitTests.Rnw | 28 ++++++++++++++--------------
inst/doc/RcppOctave-unitTests.pdf |binary
inst/doc/RcppOctave.R |only
inst/doc/RcppOctave.pdf |binary
vignettes/RcppOctave-unitTests.Rnw | 28 ++++++++++++++--------------
13 files changed, 63 insertions(+), 60 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.3.810.2 dated 2013-04-30 and 0.3.820 dated 2013-05-13
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 3.820). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the MPL 2.0, while RcppArmadillo (the Rcpp
bindings/bridge to Armadillo) is licensed under the GNU GPL
version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
ChangeLog | 7
DESCRIPTION | 13
MD5 | 84 +--
cleanup | 1
debian/changelog | 6
inst/NEWS.Rd | 12
inst/doc/RcppArmadillo-intro.pdf |binary
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/doc/unitTests-results/RcppArmadillo-unitTests.html | 6
inst/doc/unitTests-results/RcppArmadillo-unitTests.txt | 10
inst/include/armadillo_bits/Col_bones.hpp | 13
inst/include/armadillo_bits/Col_meat.hpp | 33 +
inst/include/armadillo_bits/Cube_bones.hpp | 38 +
inst/include/armadillo_bits/Cube_meat.hpp | 260 ++++++++++--
inst/include/armadillo_bits/Mat_bones.hpp | 35 -
inst/include/armadillo_bits/Mat_meat.hpp | 164 ++++---
inst/include/armadillo_bits/Row_bones.hpp | 9
inst/include/armadillo_bits/Row_meat.hpp | 33 +
inst/include/armadillo_bits/SpMat_meat.hpp | 51 +-
inst/include/armadillo_bits/arma_version.hpp | 6
inst/include/armadillo_bits/compiler_setup.hpp | 8
inst/include/armadillo_bits/config.hpp | 30 +
inst/include/armadillo_bits/debug.hpp | 54 +-
inst/include/armadillo_bits/eGlueCube_meat.hpp | 2
inst/include/armadillo_bits/eglue_core_meat.hpp | 15
inst/include/armadillo_bits/eop_core_meat.hpp | 15
inst/include/armadillo_bits/field_bones.hpp | 96 ++--
inst/include/armadillo_bits/field_meat.hpp | 68 +++
inst/include/armadillo_bits/fn_as_scalar.hpp | 120 ++++-
inst/include/armadillo_bits/fn_trace.hpp | 4
inst/include/armadillo_bits/gemm.hpp | 62 +-
inst/include/armadillo_bits/gemv.hpp | 82 ++-
inst/include/armadillo_bits/glue_mixed_meat.hpp | 2
inst/include/armadillo_bits/glue_times_bones.hpp | 22 -
inst/include/armadillo_bits/glue_times_meat.hpp | 165 ++++---
inst/include/armadillo_bits/op_dot_bones.hpp | 15
inst/include/armadillo_bits/op_dot_meat.hpp | 160 +++----
inst/include/armadillo_bits/op_strans_bones.hpp | 32 -
inst/include/armadillo_bits/op_strans_meat.hpp | 44 +-
inst/include/armadillo_bits/op_sum_meat.hpp | 12
inst/include/armadillo_bits/operator_times.hpp | 2
inst/include/armadillo_bits/traits.hpp | 13
inst/include/armadillo_bits/unwrap.hpp | 337 ++++++++++------
43 files changed, 1362 insertions(+), 779 deletions(-)
Title: Pheno2Geno - Generating genetic markers and maps from molecular
phenotypes
Diff between pheno2geno versions 1.0.0 dated 2012-10-24 and 1.1.0 dated 2013-05-13
Description: Pheno2Geno is an R package for the computational
generation genetic markers and maps from molecular phenotypes
Author: Konrad Zych
Maintainer: Konrad Zych
pheno2geno-1.0.0/pheno2geno/R/checks.r |only
pheno2geno-1.0.0/pheno2geno/R/cross.denovo.r |only
pheno2geno-1.0.0/pheno2geno/R/fakePopulation.r |only
pheno2geno-1.0.0/pheno2geno/R/find.mixups.r |only
pheno2geno-1.0.0/pheno2geno/R/findDiffExpressed.r |only
pheno2geno-1.0.0/pheno2geno/R/generate.biomarkers.r |only
pheno2geno-1.0.0/pheno2geno/R/genotypesToCross.r |only
pheno2geno-1.0.0/pheno2geno/R/intoPopulation.r |only
pheno2geno-1.0.0/pheno2geno/R/map.functions.r |only
pheno2geno-1.0.0/pheno2geno/R/markersCorPlot.r |only
pheno2geno-1.0.0/pheno2geno/R/plotMapComparison.r |only
pheno2geno-1.0.0/pheno2geno/R/plotingRoutines.r |only
pheno2geno-1.0.0/pheno2geno/R/postprocessing.r |only
pheno2geno-1.0.0/pheno2geno/R/read.population.r |only
pheno2geno-1.0.0/pheno2geno/R/smooth.geno.r |only
pheno2geno-1.0.0/pheno2geno/R/utilities.r |only
pheno2geno-1.0.0/pheno2geno/man/createPopulation.rd |only
pheno2geno-1.0.0/pheno2geno/man/fakePopulation.rd |only
pheno2geno-1.0.0/pheno2geno/man/generateBiomarkers.rd |only
pheno2geno-1.0.0/pheno2geno/man/intoPopulation.rd |only
pheno2geno-1.0.0/pheno2geno/man/removeIndividuals.rd |only
pheno2geno-1.0.0/pheno2geno/man/scanQTLs.rd |only
pheno2geno-1.0.0/pheno2geno/man/smooth.geno.rd |only
pheno2geno-1.1.0/pheno2geno/DESCRIPTION | 11
pheno2geno-1.1.0/pheno2geno/MD5 | 106 +
pheno2geno-1.1.0/pheno2geno/R/add.to.population.R |only
pheno2geno-1.1.0/pheno2geno/R/assignLinkageGroups.R | 98 -
pheno2geno-1.1.0/pheno2geno/R/checks.R |only
pheno2geno-1.1.0/pheno2geno/R/create.mixtures.R |only
pheno2geno-1.1.0/pheno2geno/R/create.population.r |only
pheno2geno-1.1.0/pheno2geno/R/cross.denovo.R |only
pheno2geno-1.1.0/pheno2geno/R/cross.saturate.R | 573 ++++------
pheno2geno-1.1.0/pheno2geno/R/fake.population.R |only
pheno2geno-1.1.0/pheno2geno/R/find.mixups.R |only
pheno2geno-1.1.0/pheno2geno/R/findDiffExpressed.R |only
pheno2geno-1.1.0/pheno2geno/R/generate.biomarkers.R |only
pheno2geno-1.1.0/pheno2geno/R/genotypesToCross.R |only
pheno2geno-1.1.0/pheno2geno/R/map.functions.R |only
pheno2geno-1.1.0/pheno2geno/R/markerPlacementPlot.R | 2
pheno2geno-1.1.0/pheno2geno/R/markersCorPlot.R |only
pheno2geno-1.1.0/pheno2geno/R/plotMapComparison.R |only
pheno2geno-1.1.0/pheno2geno/R/plotRoutines.R |only
pheno2geno-1.1.0/pheno2geno/R/postprocessing.R |only
pheno2geno-1.1.0/pheno2geno/R/power.plot.R |only
pheno2geno-1.1.0/pheno2geno/R/qtl.comparison.plot.R |only
pheno2geno-1.1.0/pheno2geno/R/read.population.R |only
pheno2geno-1.1.0/pheno2geno/R/save.gff.R |only
pheno2geno-1.1.0/pheno2geno/R/scan.qtls.r |only
pheno2geno-1.1.0/pheno2geno/R/transformations.R |only
pheno2geno-1.1.0/pheno2geno/R/utilities.R |only
pheno2geno-1.1.0/pheno2geno/R/write.population.R |only
pheno2geno-1.1.0/pheno2geno/README.md | 38
pheno2geno-1.1.0/pheno2geno/data/yeastCross.rda |binary
pheno2geno-1.1.0/pheno2geno/data/yeastPopulation.rda |binary
pheno2geno-1.1.0/pheno2geno/inst/CITATION | 31
pheno2geno-1.1.0/pheno2geno/man/add.to.population.rd |only
pheno2geno-1.1.0/pheno2geno/man/assignedChrToMarkers.rd | 3
pheno2geno-1.1.0/pheno2geno/man/create.population.rd |only
pheno2geno-1.1.0/pheno2geno/man/cross.denovo.rd | 18
pheno2geno-1.1.0/pheno2geno/man/cross.saturate.rd | 16
pheno2geno-1.1.0/pheno2geno/man/fake.population.rd |only
pheno2geno-1.1.0/pheno2geno/man/findDiffExpressed.rd | 3
pheno2geno-1.1.0/pheno2geno/man/generate.biomarkers.rd |only
pheno2geno-1.1.0/pheno2geno/man/markerPlacementPlot.rd | 3
pheno2geno-1.1.0/pheno2geno/man/markersCorPlot.rd | 4
pheno2geno-1.1.0/pheno2geno/man/phenotypes2genotypes-internal.rd | 152 +-
pheno2geno-1.1.0/pheno2geno/man/phenotypes2genotypes-package.rd | 44
pheno2geno-1.1.0/pheno2geno/man/power.plot.rd |only
pheno2geno-1.1.0/pheno2geno/man/projectOldMarkers.rd | 3
pheno2geno-1.1.0/pheno2geno/man/qtl.comparison.plot.rd |only
pheno2geno-1.1.0/pheno2geno/man/read.population.rd | 41
pheno2geno-1.1.0/pheno2geno/man/reorganizeMarkersWithin.rd | 13
pheno2geno-1.1.0/pheno2geno/man/save.gff.rd |only
pheno2geno-1.1.0/pheno2geno/man/scan.qtls.rd |only
pheno2geno-1.1.0/pheno2geno/man/set.geno.from.cross.rd | 4
pheno2geno-1.1.0/pheno2geno/man/transformations.rd |only
pheno2geno-1.1.0/pheno2geno/man/write.population.rd | 20
pheno2geno-1.1.0/pheno2geno/tests/1k |only
pheno2geno-1.1.0/pheno2geno/tests/offspring_phenotypes.csv | 99 -
pheno2geno-1.1.0/pheno2geno/tests/test_analysis.R | 37
80 files changed, 629 insertions(+), 690 deletions(-)
Title: Visualisation of sequential probability distributions using fan
charts.
Diff between fanplot versions 2.1 dated 2013-04-23 and 2.2 dated 2013-05-13
Description: The fanplot package contains a collection of R functions
to effectively display plots of sequential distributions such
as probabilistic forecasts. The plotting of distributions are
based around two functions. The first, pn, calculates the
percentiles for a set of sequential distributions over a
specified time period. The second, fan, plots the calculated
percentiles of the sequential distributions. The resulting plot
is a set of coloured polygon, with shadings corresponding to
the percentile values.
Author: Guy J. Abel
Maintainer: "Guy J. Abel"
DESCRIPTION | 6 -
MD5 | 16 +--
R/dsplitnorm.R | 4
R/fanplot-internal.R | 251 +++++++++++++++++++++++++--------------------------
R/psplitnorm.R | 8 -
R/qsplitnorm.R | 12 +-
data/th.mcmc.rda |binary
inst/doc/fanplot.pdf |binary
man/dsplitnorm.Rd | 10 +-
9 files changed, 158 insertions(+), 149 deletions(-)
Title: csSAM - cell-specific Significance Analysis of Microarrays
Diff between csSAM versions 1.2.1 dated 2012-11-23 and 1.2.4 dated 2013-05-13
Description: Cell-type specific differential expression of a microarray
experiment of heterogeneous tissue samples, using SAM.
Author: Shai Shen-Orr, Rob Tibshirani, Narasimhan Balasubramanian,
David Wang
Maintainer: Shai Shen-Orr
DESCRIPTION | 10 ++++++----
MD5 | 12 +++++++-----
NEWS |only
R/csSAM-package.R | 10 +++++++---
R/fdrCsSAM.R | 4 +++-
R/findSigGene.R | 13 +++++++++----
man/csSAM-package.Rd | 10 +++++++---
test.html |only
8 files changed, 39 insertions(+), 20 deletions(-)
Title: Semi-parametric estimators of truncated regression models
Diff between truncSP versions 1.1 dated 2011-09-07 and 1.2 dated 2013-05-13
Description: Semi-parametric estimation of truncated linear regression
models
Author: Anita Lindmark and Maria Karlsson, Department of Statistics,
Umea University
Maintainer: Anita Lindmark
truncSP-1.1/truncSP/R/lt.r |only
truncSP-1.1/truncSP/R/ltbootstrap.r |only
truncSP-1.1/truncSP/R/qme.r |only
truncSP-1.1/truncSP/R/qmebootstrap.r |only
truncSP-1.1/truncSP/R/stls.r |only
truncSP-1.1/truncSP/R/stlsbootstrap.r |only
truncSP-1.2/truncSP/DESCRIPTION | 13 +++---
truncSP-1.2/truncSP/MD5 | 50 ++++++++++++-------------
truncSP-1.2/truncSP/R/lt.R |only
truncSP-1.2/truncSP/R/ltbootstrap.R |only
truncSP-1.2/truncSP/R/ltclasses.r | 2 -
truncSP-1.2/truncSP/R/ltmethods.r | 17 +++++++-
truncSP-1.2/truncSP/R/qme.R |only
truncSP-1.2/truncSP/R/qmebootstrap.R |only
truncSP-1.2/truncSP/R/qmeclasses.r | 2 -
truncSP-1.2/truncSP/R/qmemethods.r | 48 ++++++++++++++----------
truncSP-1.2/truncSP/R/stls.R |only
truncSP-1.2/truncSP/R/stlsbootstrap.R |only
truncSP-1.2/truncSP/R/stlsmethods.r | 4 +-
truncSP-1.2/truncSP/man/lt-class.Rd | 29 +++++++++-----
truncSP-1.2/truncSP/man/lt.Rd | 52 +++++++++++---------------
truncSP-1.2/truncSP/man/lt.fit.Rd | 22 ++++-------
truncSP-1.2/truncSP/man/qme-class.Rd | 12 +++---
truncSP-1.2/truncSP/man/qme.Rd | 40 ++++++++------------
truncSP-1.2/truncSP/man/qme.fit.Rd | 23 ++++-------
truncSP-1.2/truncSP/man/stls-class.Rd | 2 -
truncSP-1.2/truncSP/man/stls.Rd | 40 ++++++++------------
truncSP-1.2/truncSP/man/stls.fit.Rd | 24 ++++--------
truncSP-1.2/truncSP/man/summary.lt-class.Rd | 10 ++---
truncSP-1.2/truncSP/man/summary.qme-class.Rd | 10 ++---
truncSP-1.2/truncSP/man/summary.stls-class.Rd | 2 -
truncSP-1.2/truncSP/man/truncSP-package.Rd | 26 +++++--------
32 files changed, 210 insertions(+), 218 deletions(-)
Title: L-moments, Censored L-moments, Trimmed L-moments, L-comoments,
and Many Distributions
Diff between lmomco versions 1.7.5 dated 2013-03-31 and 1.7.7 dated 2013-05-13
Description: The package provides a comparatively comprehensive
implementation of the theory of L-moments. Implementations for
L-moment and probability-weighted moment (PWM) estimation, and
parameter estimation for numerous familiar and not-so-familiar
distributions are provided. L-moment estimation for the same
distributions from parameters. L-moments are linear functions
of order statistics and are linearly related to PWMs. L-moments
are analogous to product moments; however, L-moments have many
advantages including unbiasedness, robustness, and consistency.
L-moments can outperform maximum likelihood for small to
moderate samples. The lmomco package historically was
originally oriented around circa 1996-FORTRAN algorithms by
Hosking, and the nomenclature parallels those of the Hosking
library. The Hosking algorithms later became available in the
lmom package. However, vast extensions, components, concepts,
L-moment curiosities, and research topics are added to aid and
expand the breadth of L-moment applications. Such extensions
the Sen weighted mean, Gini mean difference, plotting
positions, and conditional probability adjustments. L-moment
ratio diagrams are supported. Computations of L-moments for
right-tail and left-tail censoring by known or unknown
censoring threshold (via Hosking) and also by indicator
variable (via Wang et al.) also are available. Asymmetric
trimmed L-moments are supported as are numerical integration
dynamically compute trajectories of select TL-moment ratios for
the construction of TL-moment ratio diagrams. L-moments have
been extended into multivariate space; the sample L-comoments
are implemented and might have considerable application in
copula theory because L-comoments measure asymmetric
association and higher comoments or comovements of variables.
The package supports exact analytical boot-strap estimates of
order statistics, L-moments, and variances-covariances of
L-moments. The package provides the Harri-Coble Tau34-squared
Test for Normality using sample L-skew and L-kurtosis. Support
for the following distributions, with moment type shown as "L"
(L-moments) or "TL" (trimmed L-moments) and additional support
for right-tail censoring ([RC]) include, is available:
Asymmetric Exponential Power (L), Cauchy (TL), Eta-Mu (L),
Exponential (L), Gamma (L), Generalized Extreme Value (L),
Generalized Lambda (L & TL), Generalized Logistic (L),
Generalized Normal (L), Generalized Pareto (L[RC] & TL), Gumbel
(L), Kappa (L), Kappa-Mu (L), Kumaraswamy (L), Laplace (L),
Normal (L), 3-parameter log-Normal (L), Pearson Type III (L),
Rayleigh (L), Reverse Gumbel (L[RC]), Rice/Rician (L),
Truncated Exponential (L), Wakeby (L), and Weibull (L).
Author: William H. Asquith
Maintainer: William H. Asquith
DESCRIPTION | 95 +++++++++++++++++------------------
MD5 | 58 ++++++++++-----------
NEWS | 28 ++++++++++
R/paraep4.R | 7 +-
R/pmoms.R | 119 +++++++++++++++++++++++++++++----------------
man/cdfgld.Rd | 3 +
man/dist.list.Rd | 5 +
man/gen.freq.curves.Rd | 5 +
man/is.gld.Rd | 4 +
man/lmomTLgld.Rd | 3 -
man/lmomsf01.Rd | 17 +++---
man/pdfwei.Rd | 5 +
man/pmoms.Rd | 19 +++----
man/pwmLC.Rd | 2
man/pwmRC.Rd | 8 +--
man/quagam.Rd | 4 +
man/quagld.Rd | 4 +
man/theoLmoms.max.ostat.Rd | 2
man/tlmrcau.Rd | 2
man/tlmrexp.Rd | 2
man/tlmrgev.Rd | 5 +
man/tlmrglo.Rd | 5 +
man/tlmrgno.Rd | 4 +
man/tlmrgpa.Rd | 4 +
man/tlmrgum.Rd | 2
man/tlmrnor.Rd | 2
man/tlmrpe3.Rd | 2
man/tlmrray.Rd | 2
man/vec2lmom.Rd | 3 -
man/z.par2qua.Rd | 4 -
30 files changed, 264 insertions(+), 161 deletions(-)
Title: Deal with one and two (normal) samples
Diff between OneTwoSamples versions 1.0-1 dated 2013-04-28 and 1.0-2 dated 2013-05-13
Description: In this package, we introduce an R function
one_two_sample() which can deal with one and two (normal)
samples. For one normal sample x, the function reports
descriptive statistics, plot, interval estimation and test of
hypothesis of x. For two normal samples x and y, the function
reports descriptive statistics, plot, interval estimation and
test of hypothesis of x and y, respectively. It also reports
interval estimation and test of hypothesis of mu1-mu2 (the
difference of the means of x and y) and sigma1^2 / sigma2^2
(the ratio of the variances of x and y), tests whether x and y
are from the same population, finds the correlation coefficient
of x and y if x and y have the same length.
Author: Ying-Ying Zhang (Robert)
Maintainer: Ying-Ying Zhang (Robert)
ChangeLog |only
DESCRIPTION | 8 ++++----
MD5 | 14 ++++++++------
R/one_sample.R | 13 ++++++++-----
R/one_two_sample.R | 31 ++++++++++++++-----------------
man/OneTwoSamples-package.Rd | 4 ++--
man/one_sample.Rd | 6 +++---
man/one_two_sample.Rd | 4 ++--
tests |only
9 files changed, 41 insertions(+), 39 deletions(-)
Title: Algorithms and framework for Nonnegative Matrix Factorization
(NMF).
Diff between NMF versions 0.16.2 dated 2013-03-27 and 0.16.6 dated 2013-05-13
Description: This package provides a framework to perform Non-negative
Matrix Factorization (NMF). It implements a set of already
published algorithms and seeding methods, and provides a
framework to test, develop and plug new/custom algorithms. Most
of the built-in algorithms have been optimized in C++, and the
main interface function provides an easy way of performing
parallel computations on multicore machines.
Author: Renaud Gaujoux, Cathal Seoighe
Maintainer: Renaud Gaujoux
DESCRIPTION | 8 -
MD5 | 61 +++++++-------
NEWS | 13 +++
R/NMF-class.R | 8 +
R/algorithms-base.R | 2
R/nmf-package.R | 9 +-
R/options.R | 6 +
R/parallel.R | 7 -
README.md | 11 +-
inst/REFERENCES.bib | 2
inst/doc/NMF-unitTests.pdf |binary
inst/doc/NMF-vignette.pdf |binary
inst/doc/heatmaps.pdf |binary
inst/tests/runit.NMFclass.r | 2
inst/tests/runit.aheatmap.R | 2
inst/tests/runit.algorithms.r | 2
inst/tests/runit.parallel.r | 49 +++++++----
man/aheatmap.Rd | 5 -
man/dimnames.Rd | 4
man/esGolub.Rd | 18 ++--
man/fcnnls.Rd | 14 +--
man/nmf.Rd | 44 +++++-----
man/nmfEstimateRank.Rd | 3
man/nmf_update_KL.Rd | 2
man/nmf_update_euclidean.Rd | 2
man/nsNMF-nmf.Rd | 10 +-
man/options.Rd | 8 +
man/scores.Rd | 16 +--
man/subset-NMF.Rd | 4
tests |only
vignettes/NMF-unitTests.Rnw | 172 ++++++++++++++++++++---------------------
vignettes/src/NMF-vignette.Rnw | 2
32 files changed, 274 insertions(+), 212 deletions(-)
Title: Solvers for boundary value problems of ordinary differential
equations
Diff between bvpSolve versions 1.2.3 dated 2013-05-11 and 1.2.3.1 dated 2013-05-13
Description: Functions that solve boundary value problems (BVP) of
systems of ordinary differential equations (ODE). The
functions provide an interface to the FORTRAN functionS
twpbvpC, colnew/colsys, and an R-implementation of the shooting
method.
Author: Karline Soetaert
Maintainer: Karline Soetaert
DESCRIPTION | 6 +++---
MD5 | 4 ++--
src/coldaeR.f | 2 +-
3 files changed, 6 insertions(+), 6 deletions(-)
Title: Sampling Variance Estimation
Diff between samplingVarEst versions 0.9-2 dated 2013-04-22 and 0.9-3 dated 2013-05-13
More information about samplingVarEst at CRAN
Description: Functions to calculate some point estimators and
estimating their variance under unequal probability sampling.
Single and two stage sampling designs are considered. Some
approximations for the second order inclusion probabilities are
available (sample and population based).
Author: Emilio Lopez Escobar, Ernesto Barrios Zamudio
Maintainer: Emilio Lopez Escobar
DESCRIPTION | 14 +++++++-------
MD5 | 38 +++++++++++++++++++++++---------------
R/VE_EB_HT_Mean_Hajek.r |only
R/VE_EB_HT_Total_Hajek.r |only
R/VE_EB_SYG_Mean_Hajek.r |only
R/VE_EB_SYG_Total_Hajek.r |only
man/Pkl_Hajek_U.rd | 4 ++--
man/Pkl_Hajek_s.rd | 4 ++--
man/VE_EB_HT_Mean_Hajek.rd |only
man/VE_EB_HT_Ratio.rd | 2 +-
man/VE_EB_HT_Total_Hajek.rd |only
man/VE_EB_SYG_Mean_Hajek.rd |only
man/VE_EB_SYG_Ratio.rd | 2 +-
man/VE_EB_SYG_Total_Hajek.rd |only
man/VE_Jk_B_Total_Hajek.rd | 2 +-
man/VE_Jk_CBS_HT_Total_Hajek.rd | 2 +-
man/VE_Jk_CBS_SYG_Total_Hajek.rd | 2 +-
man/VE_Jk_EB_SW2_Corr_Hajek.rd | 4 ++--
man/VE_Jk_EB_SW2_Mean_Hajek.rd | 4 ++--
man/VE_Jk_EB_SW2_Ratio.rd | 4 ++--
man/VE_Jk_EB_SW2_RegCo_Hajek.rd | 4 ++--
man/VE_Jk_EB_SW2_Total_Hajek.rd | 6 +++---
man/VE_Jk_Tukey_Total_Hajek.rd | 2 +-
man/samplingVarEst-package.rd | 12 ++++++++----
24 files changed, 59 insertions(+), 47 deletions(-)
Permanent link
Title: Control number of OpenMP threads dynamically
Diff between OpenMPController versions 0.1-1 dated 2013-05-10 and 0.1-2 dated 2013-05-13
More information about OpenMPController at CRAN
Description: The OpenMPController package provides a function
'omp_set_num_threads()' to set the number of OpenMP threads to
be used. This may be useful, for example, when linking against
a vendor optimised BLAS/LAPACK library (e.g. the AMD Core Math
Library), since the defaults used by those libraries may not be
highly performant.
Author: Simon Guest
Maintainer: Simon Guest
DESCRIPTION | 6 +++---
MD5 | 5 +++--
README.md |only
src/omp_set_num_threads_ptr.c | 9 ++++++++-
4 files changed, 14 insertions(+), 6 deletions(-)
Permanent link