Title: Combined analysis of pleiotropy and epistasis
Diff between cape versions 1.0 dated 2013-04-04 and 1.1 dated 2013-06-05
Description: This package combines complementary information across
multiple related phenotypes to infer directed epistatic
interactions between genetic markers. The analysis in this
package can be applied to a variety of engineered and natural
populations.
Author: Anna L. Tyler, Wei Lu, Justin J. Hendrick, Vivek M. Philip, and
Greg W. Carter
Maintainer: Anna L. Tyler
cape-1.0/cape/R/plotSelectedMarkers.R |only
cape-1.0/cape/man/plotSelectedMarkers.Rd |only
cape-1.1/cape/DESCRIPTION | 10
cape-1.1/cape/MD5 | 71 ++---
cape-1.1/cape/R/calc.p.R | 49 ++-
cape-1.1/cape/R/consec.pairs.R |only
cape-1.1/cape/R/create.covar.R | 10
cape-1.1/cape/R/direct.influence.R | 326 +++++++++++------------
cape-1.1/cape/R/get.covar.R | 11
cape-1.1/cape/R/get.network.R |only
cape-1.1/cape/R/linkage.blocks.R |only
cape-1.1/cape/R/one.pairscan.R | 6
cape-1.1/cape/R/plotCollapsedVarInf.R |only
cape-1.1/cape/R/plotNetwork.R |only
cape-1.1/cape/R/plotPairscan.R | 43 ++-
cape-1.1/cape/R/plotSinglescan.R | 234 ++++++++++++----
cape-1.1/cape/R/plotVariantInfluences.R | 34 +-
cape-1.1/cape/R/read.population.R | 13
cape-1.1/cape/R/segment.region.R |only
cape-1.1/cape/R/select.by.ind.R | 5
cape-1.1/cape/R/select.markers.for.pairscan.R | 4
cape-1.1/cape/R/set.covar.R | 21 +
cape-1.1/cape/R/singlescan.R | 18 +
cape-1.1/cape/R/writeVariantInfluences.R | 34 +-
cape-1.1/cape/data/obesity.cross.rda |binary
cape-1.1/cape/inst/doc/cape.Rnw |only
cape-1.1/cape/inst/doc/cape.pdf |binary
cape-1.1/cape/man/calc.p.Rd | 10
cape-1.1/cape/man/consec.pairs.Rd |only
cape-1.1/cape/man/direct.influence.Rd | 12
cape-1.1/cape/man/genome.wide.threshold.1D.Rd | 4
cape-1.1/cape/man/get.network.Rd |only
cape-1.1/cape/man/linkage.blocks.Rd |only
cape-1.1/cape/man/one.pairscan.Rd | 3
cape-1.1/cape/man/plotCollapsedVarInf.Rd |only
cape-1.1/cape/man/plotNetwork.Rd |only
cape-1.1/cape/man/plotPairscan.Rd | 4
cape-1.1/cape/man/plotSinglescan.Rd | 22 +
cape-1.1/cape/man/plotVariantInfluences.Rd | 6
cape-1.1/cape/man/rz.transform.Rd | 6
cape-1.1/cape/man/segment.region.Rd |only
cape-1.1/cape/man/select.markers.for.pairscan.Rd | 6
cape-1.1/cape/man/set.covar.Rd | 8
cape-1.1/cape/man/writeVariantInfluences.Rd | 6
44 files changed, 635 insertions(+), 341 deletions(-)
Title: Web Application Framework for R
Diff between shiny versions 0.5.0 dated 2013-03-29 and 0.6.0 dated 2013-06-05
Description: Shiny makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between
inputs and outputs and extensive pre-built widgets make it
possible to build beautiful, responsive, and powerful
applications with minimal effort.
Author: RStudio, Inc.
Maintainer: Winston Chang
DESCRIPTION | 14
MD5 | 144 +-
NAMESPACE | 15
NEWS | 38
R/bootstrap.R | 360 +++++
R/fileupload.R | 9
R/imageutils.R | 9
R/priorityqueue.R |only
R/react.R | 17
R/reactives.R | 107 +
R/shiny.R | 263 +++-
R/tags.R | 259 ++--
R/update-input.R |only
R/utils.R | 42
inst/NOTICE | 3
inst/tests-js |only
inst/tests/test-bootstrap.r | 43
inst/tests/test-reactivity.r | 13
inst/tests/test-tags.r | 27
inst/www/shared/datepicker |only
inst/www/shared/shiny.js | 1184 +++++++++++++++++--
inst/www/shared/slider/img/jslider.blue.png |binary
inst/www/shared/slider/img/jslider.plastic.png |binary
inst/www/shared/slider/img/jslider.png |binary
inst/www/shared/slider/img/jslider.round.plastic.png |binary
inst/www/shared/slider/img/jslider.round.png |binary
man-roxygen |only
man/actionButton.Rd |only
man/bootstrapPage.Rd | 9
man/checkboxGroupInput.Rd | 3
man/checkboxInput.Rd | 3
man/dateInput.Rd |only
man/dateRangeInput.Rd |only
man/invalidateLater.Rd | 31
man/numericInput.Rd | 3
man/observe.Rd | 8
man/outputOptions.Rd | 8
man/radioButtons.Rd | 3
man/reactiveTimer.Rd | 35
man/runApp.Rd | 21
man/runExample.Rd | 12
man/selectInput.Rd | 3
man/shinyServer.Rd | 6
man/sliderInput.Rd | 3
man/tabPanel.Rd | 3
man/tabsetPanel.Rd | 10
man/tag.Rd | 13
man/textInput.Rd | 3
man/updateCheckboxGroupInput.Rd |only
man/updateCheckboxInput.Rd |only
man/updateDateInput.Rd |only
man/updateDateRangeInput.Rd |only
man/updateNumericInput.Rd |only
man/updateRadioButtons.Rd |only
man/updateSelectInput.Rd |only
man/updateSliderInput.Rd |only
man/updateTabsetPanel.Rd |only
man/updateTextInput.Rd |only
man/withTags.Rd |only
59 files changed, 2331 insertions(+), 393 deletions(-)
Title: Bayesian inference of outbreak dynamics based on epidemiological
and genetic information.
Diff between outbreaker versions 1.0-0 dated 2013-02-19 and 1.0-1 dated 2013-06-05
Description: Bayesian inference of outbreak dynamics based on
epidemiological and genetic information.
Author: Thibaut Jombart
Maintainer: Thibaut Jombart
ChangeLog | 7 +++++++
DESCRIPTION | 15 ++++++++-------
MD5 | 30 ++++++++++++++++--------------
NAMESPACE | 21 +++++++++++----------
R/interface.R | 2 +-
R/plot.R | 27 ++++++++++++---------------
R/reproRate.R | 4 ++--
R/selectChains.R |only
R/simOutbreak.R | 12 ++++++------
R/tTree.R | 6 +++---
R/zzz.R | 2 +-
man/mainplots.Rd | 26 ++++++++++++++++++--------
man/outbreaker.Rd | 6 ++++--
man/selectChains.Rd |only
man/simOutbreak.Rd | 17 ++++++++++-------
man/tTree.Rd | 6 ++++--
man/toyOutbreak.Rd | 15 ++++++++++-----
17 files changed, 113 insertions(+), 83 deletions(-)
Title: Weighted Logrank Tests and NPMLE for interval censored data
Diff between interval versions 1.0-1.2 dated 2011-04-07 and 1.1-0.0 dated 2013-06-05
Description: Functions to fit nonparametric survival curves, plot them,
and perform logrank or Wilcoxon type tests.
Author: Michael P. Fay
Maintainer: Michael P. Fay
DESCRIPTION | 9 +--
MD5 |only
NAMESPACE | 2
NEWS | 12 +++-
R/getsurv.R | 15 +++--
R/icfit.R | 99 +++++++++++++++++++++++++++++++++-
R/icfitControl.R | 11 +++
R/methods.icfit.R | 117 ++++++++++++++++++++++++++++++++++-------
inst/doc/intervalCensoring.R |only
inst/doc/intervalCensoring.pdf |binary
man/icfit.Rd | 16 +++++
man/icfitControl.Rd | 14 ++++
man/ictest.Rd | 7 ++
man/interval-internal.Rd | 8 ++
man/interval-package.Rd | 4 -
man/plot.icfit.Rd | 10 +++
16 files changed, 285 insertions(+), 39 deletions(-)
Title: Beta Product Confidence Procedure for Right Censored Data
Diff between bpcp versions 0.5.0 dated 2012-06-29 and 1.0.0 dated 2013-06-05
Description: Calculates nonparametric pointwise confidence intervals
for the survival distribution for right censored data.
Especially important for small sample sizes or heavily censored
data.
Author: Michael Fay
Maintainer: Michael Fay
DESCRIPTION | 11 ++++++-----
MD5 | 18 ++++++++++--------
NEWS |only
R/kmciFunctions.R | 26 ++++++++++++++++++++++++++
demo/00Index | 4 +++-
demo/Simulation.R | 6 ++++--
demo/SimulationBootOnly.R |only
man/bpcp-package.Rd | 7 ++++---
man/kmci.object.Rd | 2 +-
man/kmciALL.Rd | 16 +++++++++++-----
man/plot.kmciLR.Rd | 9 ++++++---
11 files changed, 71 insertions(+), 28 deletions(-)
Title: Graphical Integrated Text Mining Solution
Diff between RcmdrPlugin.temis versions 0.6 dated 2013-02-10 and 0.6.1 dated 2013-06-05
More information about RcmdrPlugin.temis at CRAN
Description: An Rcommander plug-in providing an integrated solution to
perform a series of text mining tasks such as importing and
cleaning a corpus, and analyses like terms and documents
counts, vocabulary tables, terms co-occurrences and documents
similarity measures, time series analysis, correspondence
analysis and hierarchical clustering.
Author: Milan Bouchet-Valat [aut, cre], Gilles Bastin [aut]
Maintainer: Milan Bouchet-Valat
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/DESCRIPTION | 18
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/MD5 | 27
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/NAMESPACE | 1
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/NEWS |only
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/R/SnowballC.R |only
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/R/common.R | 13
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/R/corpusClustering.R | 77 +
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/R/dictionary.R | 8
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/R/importCorpus.R | 195 ++-
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/R/time.R | 20
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/inst/po/fr/LC_MESSAGES/R-RcmdrPlugin.temis.mo |binary
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/man/importCorpusDlg.rd | 9
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/man/stemDocumentSnowballC.Rd |only
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/po/R-RcmdrPlugin.temis.pot | 479 +++++----
RcmdrPlugin.temis-0.6.1/RcmdrPlugin.temis/po/R-fr.po | 525 +++++-----
RcmdrPlugin.temis-0.6/RcmdrPlugin.temis/R/Rstem.R |only
RcmdrPlugin.temis-0.6/RcmdrPlugin.temis/man/stemDocumentRstem.Rd |only
17 files changed, 784 insertions(+), 588 deletions(-)
Permanent link
Title: A Laboratory for Recursive Partytioning
Diff between party versions 1.0-6 dated 2013-01-09 and 1.0-7 dated 2013-06-05
Description: A computational toolbox for recursive partitioning. The
core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems,
including nominal, ordinal, numeric, censored as well as
multivariate response variables and arbitrary measurement
scales of the covariates. Based on conditional inference
trees, cforest() provides an implementation of Breiman's random
forests. The function mob() implements an algorithm for
recursive partitioning based on parametric models (e.g. linear
models, GLMs or survival regression) employing parameter
instability tests for split selection. Extensible functionality
for visualizing tree-structured regression models is available.
Author: Torsten Hothorn [aut, cre], Kurt Hornik [aut], Carolin Strobl
[aut], Achim Zeileis [aut]
Maintainer: Torsten Hothorn
DESCRIPTION | 9 +++++----
MD5 | 28 +++++++++++++++-------------
R/ConditionalTree.R | 5 +++--
R/Plot.R | 2 +-
data/mammoexp.rda |binary
inst/NEWS | 7 +++++++
inst/doc/MOB.R |only
inst/doc/MOB.pdf |binary
inst/doc/party.R |only
inst/doc/party.pdf |binary
man/varimp.Rd | 7 +++----
src/RandomForest.c | 4 ++--
src/Utils.c | 4 ++--
tests/Examples/party-Ex.Rout.save | 27 ++++++++++++---------------
tests/bugfixes.R | 7 +++++++
tests/bugfixes.Rout.save | 14 ++++++++++----
16 files changed, 67 insertions(+), 47 deletions(-)
Title: Statistical Tests for Evaluating Conformity to Benford's Law
Diff between BenfordTests versions 1.0.0 dated 2013-05-14 and 1.0.1 dated 2013-06-05
Description: This package contains seven specialized statistical tests
and support functions for determining if numerical data could
conform to Benford's law.
Author: Dieter William Joenssen, with contributions from Thomas
Muellerleile
Maintainer: Dieter William Joenssen
BenfordTests-manual.pdf |binary
DESCRIPTION | 8 +++----
MD5 | 10 ++++-----
NEWS | 45 +++++++++++++++++++++++---------------------
man/BenfordTests-package.Rd | 4 +--
src/NULLH_BfT.c | 10 ++++++++-
6 files changed, 44 insertions(+), 33 deletions(-)
Title: Implementation of the 3D alpha-shape for the reconstruction of
3D sets from a point cloud
Diff between alphashape3d versions 1.0-2 dated 2013-04-22 and 1.0-3 dated 2013-06-05
Description: The package alphashape3d presents the implementation in R
of the alpha-shape of a finite set of points in the
three-dimensional space. This geometric structure generalizes
the convex hull and allows to recover the shape of non-convex
and even non-connected sets in 3D, given a random sample of
points taken into it. Besides the computation of the
alpha-shape, the package alphashape3d provides users with
functions to compute the volume of the alpha-shape, identify
the connected components and facilitate the three-dimensional
graphical visualization of the estimated set.
Author: Thomas Lafarge, Beatriz Pateiro-Lopez
Maintainer: Beatriz Pateiro-Lopez
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/inashape3d.R | 13 ++++++++++++-
R/rtorus.R | 42 ++++++++++++++++++++++++++++++------------
man/alphashape3d-package.Rd | 4 ++--
man/ashape3d.Rd | 3 ++-
6 files changed, 55 insertions(+), 25 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.3.820 dated 2013-05-13 and 0.3.900.0 dated 2013-06-05
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 3.820). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the MPL 2.0, while RcppArmadillo (the Rcpp
bindings/bridge to Armadillo) is licensed under the GNU GPL
version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
RcppArmadillo-0.3.820/RcppArmadillo/inst/examples/kalman/KalmanCpp.R |only
RcppArmadillo-0.3.900.0/RcppArmadillo/ChangeLog | 13
RcppArmadillo-0.3.900.0/RcppArmadillo/DESCRIPTION | 8
RcppArmadillo-0.3.900.0/RcppArmadillo/MD5 | 115 -
RcppArmadillo-0.3.900.0/RcppArmadillo/debian/changelog | 12
RcppArmadillo-0.3.900.0/RcppArmadillo/debian/control | 4
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/NEWS.Rd | 18
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/doc/RcppArmadillo-unitTests.pdf |binary
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/doc/unitTests-results/RcppArmadillo-unitTests.html | 16
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/doc/unitTests-results/RcppArmadillo-unitTests.txt | 2
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/examples/kalman/Kalman.cpp | 13
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/examples/kalman/benchmark.R | 3
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo | 3
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Col_bones.hpp | 36
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp | 56
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 50
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 57
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/GenCube_bones.hpp | 5
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/GenCube_meat.hpp | 14
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Gen_bones.hpp | 5
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Gen_meat.hpp | 14
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp | 58
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 158 +-
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Proxy.hpp | 762 +++++++++-
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/ProxyCube.hpp | 67
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Row_bones.hpp | 40
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp | 56
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/access.hpp | 8
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 4
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/arrayops_bones.hpp | 25
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/arrayops_meat.hpp | 344 +++-
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 35
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 4
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/diagview_bones.hpp | 6
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/diagview_meat.hpp | 14
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/diskio_bones.hpp | 4
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/diskio_meat.hpp | 216 ++
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/eGlueCube_bones.hpp | 7
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/eGlueCube_meat.hpp | 18
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/eGlue_bones.hpp | 5
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/eGlue_meat.hpp | 19
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/eOpCube_bones.hpp | 5
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/eOpCube_meat.hpp | 14
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/eOp_bones.hpp | 5
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/eOp_meat.hpp | 14
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/eglue_core_meat.hpp | 464 +++++-
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/eop_core_meat.hpp | 291 +++
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/fn_as_scalar.hpp | 3
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/forward_bones.hpp | 5
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/hdf5_misc.hpp | 126 -
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/memory.hpp | 116 +
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/op_median_meat.hpp | 166 +-
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/podarray_bones.hpp | 4
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/subview_bones.hpp | 76
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_bones.hpp | 2
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_meat.hpp | 10
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/subview_meat.hpp | 236 +++
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/xvec_htrans_bones.hpp |only
RcppArmadillo-0.3.900.0/RcppArmadillo/inst/include/armadillo_bits/xvec_htrans_meat.hpp |only
60 files changed, 3213 insertions(+), 618 deletions(-)
Title: A few useful functions for statisticians
Diff between packHV versions 1.5 dated 2013-05-10 and 1.6 dated 2013-06-05
Description: Various useful functions for statisticians: describe data,
plot Kaplan-Meier curves with numbers of subjects at risk,
compare data sets, display spaghetti-plot, build
multi-contingency tables...
Author: Hugo Varet
Maintainer: Hugo Varet
DESCRIPTION | 13 ++++++++-----
MD5 | 26 +++++++++++++-------------
R/desc.R | 23 +++++++++++++++--------
R/plot_km.R | 41 ++++++++++++++++++++++++-----------------
R/plot_mm.R | 14 +++++---------
man/convert_zero_NA.Rd | 6 +++---
man/cut_quanti.Rd | 6 +++---
man/desc.Rd | 6 ++++--
man/hist_boxplot.Rd | 1 +
man/multi.table.Rd | 6 +++++-
man/packHV-package.Rd | 6 +++---
man/plot_km.Rd | 6 +++---
man/plot_mm.Rd | 12 ++++++------
man/plot_reg.Rd | 2 +-
14 files changed, 94 insertions(+), 74 deletions(-)
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
estimation
Diff between mgcv versions 1.7-23 dated 2013-05-20 and 1.7-24 dated 2013-06-05
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs. Includes a gam() function.
Author: Simon Wood
Maintainer: Simon Wood
DESCRIPTION | 6 ++---
MD5 | 22 +++++++++----------
R/fast-REML.r | 2 -
R/gam.fit3.r | 8 ++++---
R/gamm.r | 37 +++++++++++++++++++++++++--------
R/mgcv.r | 5 ++--
changeLog | 34 ++++++++++++++++++++++++++++--
man/bam.Rd | 16 +++++++++-----
man/negbin.Rd | 3 +-
man/smooth.construct.ad.smooth.spec.Rd | 6 +++--
man/smooth.construct.so.smooth.spec.Rd | 7 +++---
src/mgcv.c | 7 ++++--
12 files changed, 110 insertions(+), 43 deletions(-)
Title: Post-Hoc Interaction Analysis
Diff between phia versions 0.1-1 dated 2013-05-11 and 0.1-2 dated 2013-06-05
Description: Analysis of terms in linear, generalized and mixed linear
models, on the basis of multiple comparisons of factor
contrasts. Specially suited for the analysis of interaction
terms.
Author: Helios De Rosario-Martinez
Maintainer: Helios De Rosario-Martinez
ChangeLog | 8 ++++++++
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/getElements.R | 2 +-
R/testFactors.R | 2 +-
inst/doc/phia.pdf |binary
6 files changed, 19 insertions(+), 11 deletions(-)
Title: Batching Routines in Parallel and Passing Command-Line Arguments
to R
Diff between batch versions 1.1-3 dated 2011-04-14 and 1.1-4 dated 2013-06-05
Description: Functions to allow you to easily pass command-line
arguments into R, and functions to aid in submitting your R
code in parallel on a cluster and joining the results afterward
(e.g. multiple parameter values for simulations running in
parallel, splitting up a permutation test in parallel, etc.).
See `parseCommandArgs(...)' for the main example of how to use
this package.
Author: Thomas Hoffmann
Maintainer: Thomas Hoffmann
DESCRIPTION | 12 +++++++-----
MD5 |only
NAMESPACE | 4 ++--
R/batch.R | 10 +++++-----
4 files changed, 14 insertions(+), 12 deletions(-)