Title: Conditional logistic regression: A two-step estimation method
Diff between TwoStepCLogit versions 1.2.1 dated 2012-09-18 and 1.2.2 dated 2013-06-11
Description: Conditional logistic regression with longitudinal follow
up and individual-level random coefficients: A stable and
efficient two-step estimation method
Author: Radu V. Craiu, Thierry Duchesne, Daniel Fortin and Sophie
Baillargeon
Maintainer: Thierry Duchesne
TwoStepCLogit-1.2.1/TwoStepCLogit/TwoStepCLogit.Rproj |only
TwoStepCLogit-1.2.1/TwoStepCLogit/inst/tests |only
TwoStepCLogit-1.2.1/TwoStepCLogit/tests |only
TwoStepCLogit-1.2.2/TwoStepCLogit/DESCRIPTION | 10 +-
TwoStepCLogit-1.2.2/TwoStepCLogit/MD5 | 20 +---
TwoStepCLogit-1.2.2/TwoStepCLogit/R/Ts.estim.R | 42 +++++++---
TwoStepCLogit-1.2.2/TwoStepCLogit/R/TwoStepCLogit.R | 4
TwoStepCLogit-1.2.2/TwoStepCLogit/R/ddim.R | 14 +--
TwoStepCLogit-1.2.2/TwoStepCLogit/R/internal.R | 25 ++---
TwoStepCLogit-1.2.2/TwoStepCLogit/inst/NEWS.Rd | 11 ++
TwoStepCLogit-1.2.2/TwoStepCLogit/man/TwoStepCLogit-package.Rd | 4
11 files changed, 75 insertions(+), 55 deletions(-)
Title: R Commander Plug-in for MPA Statistics
Diff between RcmdrPlugin.MPAStats versions 1.0.2 dated 2013-02-01 and 1.1.0 dated 2013-06-11
More information about RcmdrPlugin.MPAStats at CRAN
Description: This package provides an R Commander plugin that offers a
unified menu of new and pre-existing statistical functions
related to public management and policy analysis statistics.
Functions and menus have been renamed according to the usage in
PMGT 630 in the Master of Public Administration program at
Brigham Young University.
Author: Andrew Heiss, Richard Payne
Maintainer: Andrew Heiss
CHANGELOG | 5
DESCRIPTION | 13 +
MD5 | 30 +++-
R/RcmdrPlugin.MPAStats.R | 10 +
R/anova.R |only
R/bivariate-analysis.R | 231 ++++++++++++++++++++++++++++++++++-
R/chi-square.R |only
R/confidence-intervals.R | 85 ++++++++++--
R/kruskal-wallis.R |only
R/logistic-regression.R |only
R/multiple-regression.R |only
R/ologit-regression.R |only
R/t-test.R |only
R/wilcoxon-mann-whitney.R |only
R/wilcoxon-rank.R |only
inst/CHANGELOG | 5
inst/etc/menus.txt | 44 +++---
man/DataframeSummary.Rd | 2
man/RcmdrPlugin.MPAStats-internal.Rd | 1
man/RcmdrPlugin.MPAStats-package.Rd | 12 -
man/interpretations.Rd |only
21 files changed, 369 insertions(+), 69 deletions(-)
Permanent link
Title: multicore higher-order functions
Diff between mchof versions 0.2 dated 2013-05-07 and 0.3 dated 2013-06-11
Description: mchof (read: mac'hoff) is a utility library that provides
composable, consistent parallel implementations of functionals
such as Filter, Fold, ZipWith and Partition.
Author: Ryan Grannell
Maintainer: Ryan Grannell
mchof-0.2/mchof/inst/tests/test-filter.r |only
mchof-0.2/mchof/inst/tests/test-find.r |only
mchof-0.2/mchof/inst/tests/test-matching.r |only
mchof-0.2/mchof/inst/tests/test-partition.r |only
mchof-0.2/mchof/inst/tests/test-position.r |only
mchof-0.2/mchof/inst/tests/test-reduce.r |only
mchof-0.2/mchof/inst/tests/test-speed.r |only
mchof-0.2/mchof/inst/tests/test-unzip.r |only
mchof-0.2/mchof/inst/tests/test-zip.r |only
mchof-0.2/mchof/man/plyr.Rd |only
mchof-0.3/mchof/DESCRIPTION | 26 +-
mchof-0.3/mchof/MD5 | 96 ++++++----
mchof-0.3/mchof/NAMESPACE | 6
mchof-0.3/mchof/NEWS | 42 +++-
mchof-0.3/mchof/R/call_mclapply.R | 100 ++++++----
mchof-0.3/mchof/R/filter.R | 94 ++++-----
mchof-0.3/mchof/R/fold.R |only
mchof-0.3/mchof/R/mchof.R | 68 ++++++-
mchof-0.3/mchof/R/partition.R | 70 +++----
mchof-0.3/mchof/R/position.R | 164 +++++++++--------
mchof-0.3/mchof/R/quantify.R |only
mchof-0.3/mchof/R/reduce.R | 118 ++++++------
mchof-0.3/mchof/R/reject.R |only
mchof-0.3/mchof/R/test_generators.R |only
mchof-0.3/mchof/R/test_utils.R |only
mchof-0.3/mchof/R/unzip.R | 117 +++++++-----
mchof-0.3/mchof/R/utils.R |only
mchof-0.3/mchof/R/zip.R | 161 ++++++++--------
mchof-0.3/mchof/README.md | 31 +--
mchof-0.3/mchof/inst/benchmark |only
mchof-0.3/mchof/inst/examples |only
mchof-0.3/mchof/inst/tests/test-backend.r | 98 +++++-----
mchof-0.3/mchof/inst/tests/test-factors.r | 54 +----
mchof-0.3/mchof/inst/tests/test-filters.r |only
mchof-0.3/mchof/inst/tests/test-folds.r |only
mchof-0.3/mchof/inst/tests/test-len-x.r | 259 ++++++++++++++++++---------
mchof-0.3/mchof/inst/tests/test-positions.r |only
mchof-0.3/mchof/inst/tests/test-quantifier.r |only
mchof-0.3/mchof/inst/tests/test-utils.r |only
mchof-0.3/mchof/inst/tests/test-windows.r |only
mchof-0.3/mchof/inst/tests/test-zips.r |only
mchof-0.3/mchof/man/mcAll.Rd |only
mchof-0.3/mchof/man/mcAny.Rd |only
mchof-0.3/mchof/man/mcFilter.Rd | 75 ++++---
mchof-0.3/mchof/man/mcFind.Rd | 57 +++--
mchof-0.3/mchof/man/mcFold.Rd |only
mchof-0.3/mchof/man/mcOne.Rd |only
mchof-0.3/mchof/man/mcPartition.Rd | 51 +++--
mchof-0.3/mchof/man/mcPosition.Rd | 61 ++++--
mchof-0.3/mchof/man/mcReduce.Rd | 79 ++++++--
mchof-0.3/mchof/man/mcReject.Rd |only
mchof-0.3/mchof/man/mcUnzip.Rd | 28 ++
mchof-0.3/mchof/man/mcUnzipWith.Rd | 70 +++++--
mchof-0.3/mchof/man/mcZip.Rd | 51 +++--
mchof-0.3/mchof/man/mcZipWith.Rd | 102 +++++++---
mchof-0.3/mchof/man/mchof.Rd | 86 +++++++-
mchof-0.3/mchof/tests/run_tests.R | 7
57 files changed, 1359 insertions(+), 812 deletions(-)
Title: Log-Gaussian Cox Process
Diff between lgcp versions 1.3 dated 2013-05-31 and 1.3-1 dated 2013-06-11
Description: Spatial and spatio-temporal modelling of point patterns
using the log-Gaussian Cox process
Author: B. M. Taylor, T. M. Davies, B. S. Rowlingson, P. J. Diggle.
Additional code contributions from E. Pebesma.
Maintainer: Benjamin M. Taylor
DESCRIPTION | 6 +++---
MD5 | 12 ++++++------
R/AggregateSpatialOnlyPlusParameters.R | 1 -
R/SpatialOnlyPlusParameters.R | 1 -
R/SpatioTemporalPlusParameters.R | 13 +++++++++----
R/lgcpStructures.R | 4 +++-
inst/doc/lgcp.pdf |binary
7 files changed, 21 insertions(+), 16 deletions(-)
Title: Multivariate likelihood ratio calculation and evaluation
Diff between comparison versions 1.0-0 dated 2012-07-16 and 1.0-2 dated 2013-06-11
Description: Functions for calculating and evaluating likelihood ratios
from uni/multivariate continuous observations
Author: David Lucy
Maintainer: David Lucy
comparison-1.0-0/comparison/LICENCE |only
comparison-1.0-2/comparison/DESCRIPTION | 9 +++++----
comparison-1.0-2/comparison/MD5 | 7 +++----
comparison-1.0-2/comparison/data/glass.rda |binary
comparison-1.0-2/comparison/man/two.level.normal.LR.Rd | 2 +-
5 files changed, 9 insertions(+), 9 deletions(-)
Title: Three-way component analysis
Diff between ThreeWay versions 1.1 dated 2013-03-13 and 1.1.1 dated 2013-06-11
Description: Component analysis for three-way data arrays by means of
Candecomp/Parafac, Tucker3, Tucker2 and Tucker1 models
Author: Maria Antonietta Del Ferraro, Henk A.L. Kiers, Paolo Giordani
Maintainer: Paolo Giordani
DESCRIPTION | 8 ++++----
MD5 | 22 +++++++++++-----------
R/CP.R | 17 -----------------
R/T3.R | 16 ----------------
R/bootstrapCP.R | 13 -------------
R/bootstrapT3.R | 18 ------------------
man/CPfunc.Rd | 10 ++++++----
man/CPfuncrep.Rd | 6 ++----
man/T2func.Rd | 9 ++++-----
man/T2funcrep.Rd | 6 ++----
man/T3func.Rd | 6 ++----
man/T3funcrep.Rd | 6 ++----
12 files changed, 33 insertions(+), 104 deletions(-)
Title: toolbox for pseudo and quasi random number generation and RNG
tests.
Diff between randtoolbox versions 1.13 dated 2013-04-02 and 1.14 dated 2013-06-11
Description: The package provides (1) pseudo random generators -
general linear congruential generators (Park Miller) and
multiple recursive generators (Knuth TAOCP), generalized
feedback shift register (SF-Mersenne Twister algorithm and WELL
generators); (2) quasi random generators - the Torus algorithm,
the Sobol sequence, the Halton sequence (thus include Van der
Corput sequence) and (3) some additional tests such as the gap
test, the serial test, the poker test... The package depends on
rngWELL package but it can be provided without this dependency
on demand to the maintainer. For true random number generation,
use the 'random' package, for Latin Hypercube Sampling (a
hybrid QMC method), use the 'lhs' package, a number of RNGs and
tests for RNGs are provided by 'RDieHarder', all available on
CRAN. There is also a small stand-alone package 'rngwell19937'
for the WELL19937a RNG.
Author: Yohan Chalabi, Christophe Dutang, Petr Savicky and Diethelm
Wuertz (except underlying C codes of (i) the SFMT algorithm
from M. Matsumoto and M. Saito, (ii) the Knuth-TAOCP RNG from
D. Knuth). See LICENSE file for details.
Maintainer: Christophe Dutang
DESCRIPTION | 8 ++++----
MD5 | 20 +++++++++++---------
inst/doc/fullpres.R |only
inst/doc/fullpres.pdf |binary
inst/doc/shortintro.R |only
inst/doc/shortintro.pdf |binary
man/colltest.Rd | 5 +++--
man/colltestsparse.Rd | 5 +++--
man/pseudoRNG.Rd | 3 ++-
man/quasiRNG.Rd | 3 ++-
man/runifInterface.Rd | 4 ++--
src/Makevars | 3 +--
12 files changed, 28 insertions(+), 23 deletions(-)
Title: toolbox for WELL random number generators.
Diff between rngWELL versions 0.10-1 dated 2013-03-27 and 0.10-2 dated 2013-06-11
Description: It is a dedicated package to WELL pseudo random
generators, which were introduced in Panneton et al. (2006),
``Improved Long-Period Generators Based on Linear Recurrences
Modulo 2'', ACM Transactions on Mathematical Software. But this
package is not intended to be used directly, you are strongly
__encouraged__ to use the 'randtoolbox' package, which depends
on this package.
Author: all C code by F. Panneton, P. L'Ecuyer and M. Matsumoto and R
port by Christophe Dutang and Petr Savicky
Maintainer: Christophe Dutang
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
inst/CITATION | 2 +-
src/Makevars | 3 +--
4 files changed, 9 insertions(+), 10 deletions(-)
Title: Modern measures of population differentiation
Diff between mmod versions 1.01 dated 2012-10-18 and 1.2 dated 2013-06-11
Description: mmod provides functions for measuring population
divergence from genotypic data
Author: David Winter
Maintainer: David Winter
mmod-1.01/mmod/LICENSE |only
mmod-1.01/mmod/REFERENCES.bib |only
mmod-1.01/mmod/mmod_1.01.tar.gz |only
mmod-1.01/mmod/sandbox |only
mmod-1.01/mmod/test |only
mmod-1.2/mmod/DESCRIPTION | 13 +-
mmod-1.2/mmod/MD5 | 81 ++++++++--------
mmod-1.2/mmod/NAMESPACE | 1
mmod-1.2/mmod/NEWS | 7 +
mmod-1.2/mmod/R/D_Jost.R | 15 +-
mmod-1.2/mmod/R/Gst_Hedrick.R | 14 +-
mmod-1.2/mmod/R/Gst_Nei.R | 4
mmod-1.2/mmod/R/HsHt.R | 8 -
mmod-1.2/mmod/R/as.genind.DNAbin.R |only
mmod-1.2/mmod/R/diff_stats.R | 18 +--
mmod-1.2/mmod/R/dist.codom.R | 8 -
mmod-1.2/mmod/R/harmonic_mean.R | 7 -
mmod-1.2/mmod/R/pairwise_D.R | 3
mmod-1.2/mmod/R/pairwise_Gst_Hedrick.R | 5
mmod-1.2/mmod/R/pairwise_Gst_Nei.R | 5
mmod-1.2/mmod/inst/doc/mmod-demo.R |only
mmod-1.2/mmod/inst/staticdocs/D_Jost.html | 11 +-
mmod-1.2/mmod/inst/staticdocs/Gst_Hedrick.html | 11 +-
mmod-1.2/mmod/inst/staticdocs/Gst_Nei.html | 11 +-
mmod-1.2/mmod/inst/staticdocs/Phi_st_Meirmans.html | 11 +-
mmod-1.2/mmod/inst/staticdocs/as.genind.DNAbin.html |only
mmod-1.2/mmod/inst/staticdocs/chao_bootstrap.html | 6 -
mmod-1.2/mmod/inst/staticdocs/diff_stats.html | 11 +-
mmod-1.2/mmod/inst/staticdocs/diff_test.html | 11 +-
mmod-1.2/mmod/inst/staticdocs/dist.codom.html | 13 +-
mmod-1.2/mmod/inst/staticdocs/harmonic_mean.html | 13 +-
mmod-1.2/mmod/inst/staticdocs/img |only
mmod-1.2/mmod/inst/staticdocs/index.html | 15 +-
mmod-1.2/mmod/inst/staticdocs/jacknife_populations.html | 6 -
mmod-1.2/mmod/inst/staticdocs/js |only
mmod-1.2/mmod/inst/staticdocs/mmod.html | 4
mmod-1.2/mmod/inst/staticdocs/pairwise_D.html | 11 +-
mmod-1.2/mmod/inst/staticdocs/pairwise_Gst_Hedrick.html | 11 +-
mmod-1.2/mmod/inst/staticdocs/pairwise_Gst_Nei.html | 11 +-
mmod-1.2/mmod/inst/staticdocs/rgenotypes.html | 35 +++---
mmod-1.2/mmod/inst/staticdocs/summarise_bootstrap.html | 6 -
mmod-1.2/mmod/inst/tests |only
mmod-1.2/mmod/man/as.genind.DNAbin.Rd |only
mmod-1.2/mmod/tests |only
44 files changed, 209 insertions(+), 177 deletions(-)
Title: Multivariate normal mixture models and mixtures of generalized
linear mixed models including model based clustering
Diff between mixAK versions 3.0-1 dated 2013-02-08 and 3.1 dated 2013-06-11
Description: This package contains a mixture of statistical methods
including the MCMC methods to analyze normal mixtures.
Additionally, model based clustering methods are implemented to
perform classification based on (multivariate) longitudinal (or
otherwise correlated) data. The basis for such clustering is a
mixture of multivariate generalized linear mixed models.
Author: Arnošt Komárek
Maintainer: Arnošt Komárek
DESCRIPTION | 18 ++++++++++++------
MD5 | 40 +++++++++++++++++++++-------------------
R/GLMM_MCMC.R | 46 +++++++++++++++++++++++++---------------------
R/GLMM_MCMCdata.R | 19 +++++++++++++++----
R/GLMM_MCMCwrapper.R | 12 +++++++-----
R/NMixRelabel.GLMM_MCMC.R | 8 ++++++--
data/Acidity.rda |binary
data/Enzyme.rda |binary
data/Galaxy.rda |binary
data/PBC910.RData |only
inst/CITATION | 10 +++++-----
man/GLMMMCMC.Rd | 27 ++++++++++++++-------------
man/GLMMMCMCwrapper.Rd | 8 +++++---
man/MVNmixture.Rd | 9 ++++++---
man/NMixRelabel.Rd | 13 ++++++++-----
man/PBC910.Rd |only
man/TMVN.Rd | 18 ++++++++++++------
man/Tandmob.Rd | 9 ++++-----
src/GLMM_MCMC.cpp | 35 ++++++++++++++++++-----------------
src/GLMM_MCMC.h | 9 +++++----
src/GLMM_NMixRelabel.cpp | 19 ++++++++++---------
src/GLMM_NMixRelabel.h | 3 +++
22 files changed, 176 insertions(+), 127 deletions(-)
Title: Bayesian Survival Regression with Flexible Error and Random
Effects Distributions
Diff between bayesSurv versions 1.1 dated 2012-12-27 and 2.1-1 dated 2013-06-11
Description: Later
Author: Arnošt Komárek
Maintainer: Arnošt Komárek
CHANGES | 6
DESCRIPTION | 9
MD5 | 62 ++---
R/bayesBisurvreg.priorInit.R | 1
R/bayessurvreg2.R | 12 -
R/bayessurvreg3.R | 199 +++++++++++++++--
R/bayessurvreg3.priorInit.R | 4
R/bayessurvreg3.priorb.R | 2
R/bayessurvreg3.writeHeaders.R | 26 ++
R/files2coda.R | 15 +
R/give.init.Gspline.R | 37 +--
R/predictive.R | 6
R/predictive2.control.R | 3
man/bayesBisurvreg.Rd | 2
man/bayessurvreg2.Rd | 4
man/bayessurvreg3.Rd | 149 +++++++++---
man/bayessurvreg3.help.Rd | 8
man/densplot2.Rd | 3
src/AK_BasicFun.h | 4
src/Gspline.cpp | 20 +
src/Gspline_update_Scale.cpp | 20 +
src/Gspline_update_a.cpp | 4
src/arms.cpp | 4
src/bayessurvreg1.cpp | 3
src/bayessurvreg1.h | 4
src/bayessurvreg2.cpp | 183 +++++++++++++--
src/bayessurvreg2.h | 77 ++++--
src/constants.h | 3
src/covMatrix.cpp | 5
src/update_Data_GS.cpp | 338 ++++++++++++++++++++++++++++-
src/update_Data_GS.h | 56 +++-
src/update_sens_spec_misclassification.cpp |only
src/update_sens_spec_misclassification.h |only
33 files changed, 1067 insertions(+), 202 deletions(-)
Title: R front-end to PostgreSQL and Pivotal (Greenplum) database,
wrapper for MADlib
Diff between PivotalR versions 0.1.0 dated 2013-06-07 and 0.1.1 dated 2013-06-11
Description: R wrapper of Pivotal Data Fabrics running on PostgreSQL or
Pivotal (Greenplum) database with parallel and distributed
computation ability for big data analytics. PivotalR is a
package that enables users of R to interact with the Pivotal
(Greenplum) Database as well as Pivotal HD/HAWQ for Big Data
analytics. It does so by providing an interface to the
operations on tables/views in the database. These operations
are almost the same as those of data.frame. Thus the users of R
do not need to learn SQL when they operate on the objects in
the database. It also provides a wrapper for MADlib, which is
an open-source library for parallel and scalable in-database
analytics.
Author: Predictive Analytics Team at Pivotal Inc.
Maintainer: Hai Qian
DESCRIPTION | 8 ++--
MD5 | 71 ++++++++++++++++++-----------------
NAMESPACE | 9 +++-
R/db_conn-generic.R | 35 ++++++++++++++---
R/defs-pkg.R | 3 +
R/madlib-glm.R | 4 +-
R/madlib-lm.R | 2 +
R/madlib-summary.R | 16 ++++++++
R/method-aggregates_.R | 64 ++++++++++++++++++++++++--------
R/method-as.db.data.frame_.R | 25 +++++++++---
R/method-as.factor_.R | 17 ++++++++
R/method-by_.R | 1
R/method-db.data.frame_.R | 6 +--
R/method-db.data.frame_props_.R | 80 ++++++++++++++++++++++++++++++++++++++--
R/method-delete_.R | 60 ++++++++++++++++++++++++------
R/method-extraction_.R | 5 +-
R/method-merge_.R | 6 +++
R/method-ops.R | 10 +++--
R/method-replacement_.R | 8 ++++
R/method-sort_.R | 1
R/predict.R | 22 ++++++++---
R/utilities.R | 4 ++
R/utility-generic.R | 9 ++--
man/aggregate-methods.Rd | 2 +
man/as.db.data.frame-methods.Rd | 13 +++++-
man/as.factor-methods.Rd | 4 +-
man/db.Rquery-class.Rd | 11 +++++
man/db.data.frame-class.Rd | 15 +++++++
man/db.objects.Rd | 11 +++++
man/db.table-class.Rd | 2 -
man/delete-methods.Rd | 9 +++-
man/dim-methods.Rd | 16 ++++++--
man/is.factor-methods.Rd |only
man/madlib.summary.Rd | 9 +++-
man/names-methods.Rd | 8 +++-
man/pkg-package.Rd | 62 ++++++++++++++++++++++++++++---
man/predict.Rd | 8 ++++
37 files changed, 508 insertions(+), 128 deletions(-)