Title: R commander Depth Tools Plug-In
Diff between RcmdrPlugin.depthTools versions 1.2 dated 2013-04-03 and 1.3 dated 2013-06-13
More information about RcmdrPlugin.depthTools at CRAN
Description: This package provides an Rcmdr plug-in based on the
depthTools package, which implements different robust
statistical tools for the description and analysis of gene
expression data based on the Modified Band Depth, namely, the
scale curves for visualizing the dispersion of one or various
groups of samples (e.g. types of tumors), a rank test to decide
whether two groups of samples come from a single distribution
and two methods of supervised classification techniques, the DS
and TAD methods.
Author: Sara Lopez-Pintado
Maintainer: Aurora Torrente
DESCRIPTION | 6 -
MD5 | 10 +-
R/RcmdrPlugin.depthTools.R | 158 +++++++++++++++++++++++++++++++++++++++++----
inst/etc/menus.txt | 2
man/computeMBD.Rd | 2
man/plotCentralCurves.Rd | 2
6 files changed, 158 insertions(+), 22 deletions(-)
Permanent link
Title: Depth Tools Package
Diff between depthTools versions 0.3 dated 2013-04-03 and 0.4 dated 2013-06-13
Description: depthTools is a package that implements different
statistical tools for the description and analysis of gene
expression data based on the concept of data depth, namely, the
scale curves for visualizing the dispersion of one or various
groups of samples (e.g. types of tumors), a rank test to decide
whether two groups of samples come from a single distribution
and two methods of supervised classification techniques, the DS
and TAD methods. All these techniques are based on the Modified
Band Depth, which is a recent notion of depth with a low
computational cost, what renders it very appropriate for high
dimensional data such as gene expression data.
Author: Sara Lopez-Pintado
Maintainer: Aurora Torrente
DESCRIPTION | 8 +-
MD5 | 14 ++--
R/centralPlot.R | 47 +++++++++++---
R/mbd.R | 170 +++++++++++++++++++++++++++++++++++++++--------------
R/tmean.R | 62 +++++++++++++++++--
man/MBD.Rd | 39 ++++++------
man/centralPlot.Rd | 23 ++++---
man/tmean.Rd | 22 +++---
8 files changed, 277 insertions(+), 108 deletions(-)
Title: Companion package to "Learning Statistics with R"
Diff between lsr versions 0.2.3 dated 2013-04-19 and 0.2.4 dated 2013-06-13
Description: Functions that I have found useful for teaching purposes.
Author: Daniel Navarro
Maintainer: Daniel Navarro
DESCRIPTION | 8 +-
MD5 | 12 +--
NEWS | 6 +
R/lsr.R | 173 +++++++++++++++++++++++++++++++----------------------
inst/CITATION | 2
man/cohensD.Rd | 3
man/lsr-package.Rd | 4 -
7 files changed, 125 insertions(+), 83 deletions(-)
Title: diversitree: comparative phylogenetic analyses of
diversification
Diff between diversitree versions 0.9-5 dated 2013-06-13 and 0.9-6 dated 2013-06-13
Description: Contains a number of comparative phylogenetic methods,
mostly focusing on analysing diversification and character
evolution. Contains implementations of BiSSE (Binary State
Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
56: 701) and its unresolved tree extensions (FitzJohn et al.
2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
and Extinction), QuaSSE (Quantitative State Speciation and
Extinction; FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE
(Geographic State Speciation and Extinction; Goldberg et al.
2011: Syst. Biol. 60: 451), and BiSSE-ness (Magnuson-Ford and
Otto 2012: Am. Nat.) Other included methods include Markov
models of discrete and continuous trait evolution and constant
rate speciation and extinction.
Author: Richard G. FitzJohn
Maintainer: Richard G. FitzJohn
DESCRIPTION | 6 +++---
MD5 | 6 +++---
src/Makevars.in | 2 +-
src/TimeMachine.cpp | 2 +-
4 files changed, 8 insertions(+), 8 deletions(-)
Title: Flexible regression models for survival data.
Diff between timereg versions 1.7.6 dated 2013-05-23 and 1.7.7 dated 2013-06-13
Description: Programs for Martinussen and Scheike (2006), `Dynamic
Regression Models for Survival Data', Springer Verlag. Plus
more recent developments. Additive survival model,
semiparametric proportional odds model, fast cumulative
residuals, excess risk models and more. Flexible competing
risks regression including GOF-tests. Two-stage frailty
modelling. PLS for the additive risk model. Lasso in ahaz
package.
Author: Thomas Scheike with contributions from Torben Martinussen and
Jeremy Silver
Maintainer: Thomas Scheike
DESCRIPTION | 29 ++++++++++++----------
MD5 | 27 +++++++++++++++------
NAMESPACE | 62 ++++++++++++++++++++++++-------------------------
R/dynadd.r |only
R/new.cox-aalen.r | 2 -
R/new.dynreg.r |only
R/new.prop-excess.r |only
R/new.timecox.r |only
R/prop-excess.r |only
R/timecox.r |only
R/two-stage-reg.r | 15 +++++++----
man/cox.Rd |only
man/dynreg.Rd |only
man/internal-addreg.Rd | 6 ++++
man/plot.dynreg.Rd |only
man/prop.excess.Rd |only
man/timecox.Rd |only
man/two.stage.reg.Rd | 6 ++--
src/Makevars | 24 +++++++++---------
src/cox-aalen.c | 12 ++++-----
20 files changed, 103 insertions(+), 80 deletions(-)
Title: Parameter estimation and prediction for hidden Markov and
semi-Markov models for data with multiple observation
sequences.
Diff between mhsmm versions 0.4.8 dated 2013-01-26 and 0.4.10 dated 2013-06-13
Description: Parameter estimation and prediction for hidden Markov and
semi-Markov models for data with multiple observation
sequences. Suitable for equidistant time series data, with
multivariate and/or missing data.
Author: Jared O'Connell
Maintainer: Jared O'Connell
ChangeLog | 6 +++++-
DESCRIPTION | 7 ++++---
MD5 | 26 ++++++++++++++------------
R/hmm_functions.R | 3 ++-
R/hsmm_functions.R | 3 ++-
inst/doc/DHMM1.R |only
inst/doc/DHMM2.R |only
inst/doc/DHMM2.pdf |binary
man/addStates.Rd | 9 ++++-----
man/hsmmfit.Rd | 3 ++-
man/hsmmspec.Rd | 3 ++-
man/smooth.discrete.Rd | 3 ++-
mhsmm-Ex.R | 5 +++--
vignettes/fig/dhmm-clsfig1.pdf |binary
vignettes/fig/dhmm-clsfig2.pdf |binary
15 files changed, 40 insertions(+), 28 deletions(-)
Title: diversitree: comparative phylogenetic analyses of
diversification
Diff between diversitree versions 0.9-3 dated 2012-05-08 and 0.9-5 dated 2013-06-13
Description: Contains a number of comparative phylogenetic methods,
mostly focusing on analysing diversification and character
evolution. Contains implementations of BiSSE (Binary State
Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
56: 701) and its unresolved tree extensions (FitzJohn et al.
2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
and Extinction), QuaSSE (Quantitative State Speciation and
Extinction; FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE
(Geographic State Speciation and Extinction; Goldberg et al.
2011: Syst. Biol. 60: 451), and BiSSE-ness (Magnuson-Ford and
Otto 2012: Am. Nat.) Other included methods include Markov
models of discrete and continuous trait evolution and constant
rate speciation and extinction.
Author: Richard G. FitzJohn
Maintainer: Richard G. FitzJohn
diversitree-0.9-3/diversitree/R/cvodes.R |only
diversitree-0.9-3/diversitree/R/diversitree-branches-C.R |only
diversitree-0.9-3/diversitree/R/mle-tgp.R |only
diversitree-0.9-3/diversitree/R/model-linear-deriv.R |only
diversitree-0.9-3/diversitree/R/model-mkn-exp.R |only
diversitree-0.9-3/diversitree/cvodes-notes.txt |only
diversitree-0.9-3/diversitree/inst/include |only
diversitree-0.9-3/diversitree/man/make.mkn.deriv.Rd |only
diversitree-0.9-3/diversitree/man/time.Rd |only
diversitree-0.9-3/diversitree/src/cvodes |only
diversitree-0.9-3/diversitree/src/cvodes_all_branches.c |only
diversitree-0.9-3/diversitree/src/cvodes_all_branches.h |only
diversitree-0.9-3/diversitree/src/cvodes_asr_marginal.c |only
diversitree-0.9-3/diversitree/src/cvodes_interface.c |only
diversitree-0.9-3/diversitree/src/cvodes_interface_fwd.c |only
diversitree-0.9-3/diversitree/src/cvodes_obj.c |only
diversitree-0.9-3/diversitree/src/cvodes_obj.h |only
diversitree-0.9-3/diversitree/src/cvodes_obj_fwd.c |only
diversitree-0.9-3/diversitree/src/cvodes_obj_fwd.h |only
diversitree-0.9-3/diversitree/src/linear-deriv.c |only
diversitree-0.9-3/diversitree/src/linear-deriv.h |only
diversitree-0.9-3/diversitree/src/mkn.c |only
diversitree-0.9-3/diversitree/src/mkn.h |only
diversitree-0.9-3/diversitree/src/util-complex.c |only
diversitree-0.9-3/diversitree/src/util-complex.h |only
diversitree-0.9-3/diversitree/src/util-linalg.c |only
diversitree-0.9-5/diversitree/ChangeLog | 4
diversitree-0.9-5/diversitree/DESCRIPTION | 22
diversitree-0.9-5/diversitree/MD5 | 355 -
diversitree-0.9-5/diversitree/NAMESPACE | 30
diversitree-0.9-5/diversitree/R/asr-geosse.R |only
diversitree-0.9-5/diversitree/R/asr-mkn.R | 4
diversitree-0.9-5/diversitree/R/asr-t.R |only
diversitree-0.9-5/diversitree/R/asr.R | 47
diversitree-0.9-5/diversitree/R/check.R | 48
diversitree-0.9-5/diversitree/R/clade-tree.R | 53
diversitree-0.9-5/diversitree/R/constrain.R | 73
diversitree-0.9-5/diversitree/R/continuous.R | 3
diversitree-0.9-5/diversitree/R/desolve.R | 131
diversitree-0.9-5/diversitree/R/diversitree-branches.R | 45
diversitree-0.9-5/diversitree/R/drop.tip.fixed.R | 5
diversitree-0.9-5/diversitree/R/dtlik.R | 8
diversitree-0.9-5/diversitree/R/expm.R |only
diversitree-0.9-5/diversitree/R/gslode.R |only
diversitree-0.9-5/diversitree/R/mcmc.R | 201
diversitree-0.9-5/diversitree/R/mle.R | 6
diversitree-0.9-5/diversitree/R/model-bd-nee.R | 15
diversitree-0.9-5/diversitree/R/model-bd-ode.R | 17
diversitree-0.9-5/diversitree/R/model-bd-t.R | 30
diversitree-0.9-5/diversitree/R/model-bd.R | 23
diversitree-0.9-5/diversitree/R/model-bisse-split.R | 29
diversitree-0.9-5/diversitree/R/model-bisse-t.R | 34
diversitree-0.9-5/diversitree/R/model-bisse.R | 21
diversitree-0.9-5/diversitree/R/model-bisseness.R | 43
diversitree-0.9-5/diversitree/R/model-classe.R | 12
diversitree-0.9-5/diversitree/R/model-geosse-split.R | 22
diversitree-0.9-5/diversitree/R/model-geosse.R | 61
diversitree-0.9-5/diversitree/R/model-mkn-expokit.R |only
diversitree-0.9-5/diversitree/R/model-mkn-meristic.R |only
diversitree-0.9-5/diversitree/R/model-mkn-multitrait.R | 10
diversitree-0.9-5/diversitree/R/model-mkn-ode.R | 15
diversitree-0.9-5/diversitree/R/model-mkn-pij.R |only
diversitree-0.9-5/diversitree/R/model-mkn.R | 32
diversitree-0.9-5/diversitree/R/model-musse-t.R | 95
diversitree-0.9-5/diversitree/R/model-musse.R | 48
diversitree-0.9-5/diversitree/R/model-quasse-common.R | 11
diversitree-0.9-5/diversitree/R/model-quasse-fftR.R | 10
diversitree-0.9-5/diversitree/R/model-quasse-mol.R | 2
diversitree-0.9-5/diversitree/R/model-quasse.R | 52
diversitree-0.9-5/diversitree/R/plot-alt-extra.R | 189
diversitree-0.9-5/diversitree/R/profiles-plot.R | 97
diversitree-0.9-5/diversitree/R/split.R | 49
diversitree-0.9-5/diversitree/R/t.R | 296
diversitree-0.9-5/diversitree/R/td.R | 16
diversitree-0.9-5/diversitree/R/time-machine.R |only
diversitree-0.9-5/diversitree/R/util-tree.R | 27
diversitree-0.9-5/diversitree/R/util.R | 34
diversitree-0.9-5/diversitree/R/zzz.R |only
diversitree-0.9-5/diversitree/README | 4
diversitree-0.9-5/diversitree/cleanup | 3
diversitree-0.9-5/diversitree/configure | 4162 ++++++-------
diversitree-0.9-5/diversitree/configure.ac | 64
diversitree-0.9-5/diversitree/configure.win | 2
diversitree-0.9-5/diversitree/inst/CITATION |only
diversitree-0.9-5/diversitree/inst/tests |only
diversitree-0.9-5/diversitree/man/big.brother.Rd | 3
diversitree-0.9-5/diversitree/man/check.Rd | 8
diversitree-0.9-5/diversitree/man/make.bd.Rd | 12
diversitree-0.9-5/diversitree/man/make.bd.t.Rd | 34
diversitree-0.9-5/diversitree/man/make.bisse.Rd | 52
diversitree-0.9-5/diversitree/man/make.bisse.split.Rd | 15
diversitree-0.9-5/diversitree/man/make.bisse.td.Rd | 39
diversitree-0.9-5/diversitree/man/make.bisseness.Rd | 8
diversitree-0.9-5/diversitree/man/make.bm.Rd | 6
diversitree-0.9-5/diversitree/man/make.geosse.split.Rd | 127
diversitree-0.9-5/diversitree/man/make.mkn.Rd | 5
diversitree-0.9-5/diversitree/man/make.musse.multitrait.Rd | 4
diversitree-0.9-5/diversitree/man/make.musse.td.Rd | 11
diversitree-0.9-5/diversitree/man/make.prior.Rd | 3
diversitree-0.9-5/diversitree/man/make.quasse.Rd | 2
diversitree-0.9-5/diversitree/man/mcmc.Rd | 37
diversitree-0.9-5/diversitree/man/profiles.plot.Rd | 6
diversitree-0.9-5/diversitree/man/trait.plot.Rd | 21
diversitree-0.9-5/diversitree/man/utils.Rd |only
diversitree-0.9-5/diversitree/src/GslOdeBase.cpp |only
diversitree-0.9-5/diversitree/src/GslOdeBase.h |only
diversitree-0.9-5/diversitree/src/GslOdeCompiled.cpp |only
diversitree-0.9-5/diversitree/src/GslOdeCompiled.h |only
diversitree-0.9-5/diversitree/src/GslOdeR.cpp |only
diversitree-0.9-5/diversitree/src/GslOdeR.h |only
diversitree-0.9-5/diversitree/src/GslOdeTime.cpp |only
diversitree-0.9-5/diversitree/src/GslOdeTime.h |only
diversitree-0.9-5/diversitree/src/Makevars.in | 11
diversitree-0.9-5/diversitree/src/Makevars.win | 17
diversitree-0.9-5/diversitree/src/Spline.cpp |only
diversitree-0.9-5/diversitree/src/Spline.h |only
diversitree-0.9-5/diversitree/src/TimeMachine.cpp |only
diversitree-0.9-5/diversitree/src/TimeMachine.h |only
diversitree-0.9-5/diversitree/src/bd-eqs.c | 105
diversitree-0.9-5/diversitree/src/bisse-eqs.c | 190
diversitree-0.9-5/diversitree/src/bisseness-eqs.c | 48
diversitree-0.9-5/diversitree/src/classe-eqs.c | 52
diversitree-0.9-5/diversitree/src/config.h.in | 6
diversitree-0.9-5/diversitree/src/config.h.win | 3
diversitree-0.9-5/diversitree/src/continuous.c | 6
diversitree-0.9-5/diversitree/src/continuous.h | 4
diversitree-0.9-5/diversitree/src/derivs.c |only
diversitree-0.9-5/diversitree/src/derivs.h |only
diversitree-0.9-5/diversitree/src/dgexpvi.f |only
diversitree-0.9-5/diversitree/src/dsexpvi.f | 4
diversitree-0.9-5/diversitree/src/expm.f |only
diversitree-0.9-5/diversitree/src/geosse-eqs.c | 53
diversitree-0.9-5/diversitree/src/hdr.c |only
diversitree-0.9-5/diversitree/src/hdr.h |only
diversitree-0.9-5/diversitree/src/interface.cpp |only
diversitree-0.9-5/diversitree/src/mkn-eqs.c | 43
diversitree-0.9-5/diversitree/src/mkn-expokit.c |only
diversitree-0.9-5/diversitree/src/mkn-expokit.h |only
diversitree-0.9-5/diversitree/src/mkn-meristic-eqs.c |only
diversitree-0.9-5/diversitree/src/mkn-pij.c |only
diversitree-0.9-5/diversitree/src/mkn-pij.h |only
diversitree-0.9-5/diversitree/src/musse-eqs.c | 178
diversitree-0.9-5/diversitree/src/quasse-eqs-mol.c | 1
diversitree-0.9-5/diversitree/src/util-matrix.c | 50
diversitree-0.9-5/diversitree/src/util-matrix.h | 7
diversitree-0.9-5/diversitree/src/util-splines.c |only
diversitree-0.9-5/diversitree/src/util-splines.h |only
diversitree-0.9-5/diversitree/src/util.c | 57
diversitree-0.9-5/diversitree/src/util.h | 21
149 files changed, 3910 insertions(+), 3899 deletions(-)
Title: Testset for differential equations
Diff between deTestSet versions 1.0 dated 2011-12-20 and 1.1 dated 2013-06-13
Description: Solvers and testset for stiff and nonstiff differential
equations, and differential algebraic equations
Author: Karline Soetaert
Maintainer: Karline Soetaert
DESCRIPTION | 21 +-
MD5 | 162 +++++++--------
R/bimd.R | 2
R/dae.R | 11 -
R/dopri5.R | 8
R/ex_andrews.R | 81 ++++++-
R/ex_beam.R | 32 ++-
R/ex_caraxis.R | 51 +++-
R/ex_crank.R | 53 ++++-
R/ex_e5.R | 28 ++
R/ex_emep.R | 48 ++++
R/ex_fekete.R | 39 ++-
R/ex_hires.R | 154 +++++++++-----
R/ex_nand.R | 32 ++-
R/ex_orego.R | 31 ++
R/ex_pleiades.R | 35 ++-
R/ex_pollution.R | 46 +++-
R/ex_reference.R | 22 +-
R/ex_ring.R | 36 ++-
R/ex_rober.R | 33 ++-
R/ex_transistor.R | 171 +++++++++-------
R/ex_tube.R | 44 +++-
R/ex_twobit.R | 39 ++-
R/ex_vdpol.R | 28 ++
R/ex_wheelset.R | 30 ++
R/functions.R | 26 ++
R/gam.R | 8
inst/doc/car.f | 2
inst/doc/deTestSet.R |only
inst/doc/deTestSet.Rnw | 12 -
inst/doc/deTestSet.pdf |binary
man/bimd.Rd | 2
man/dae.Rd | 2
man/deTestSet.Rd | 2
man/dopri5.Rd | 9
man/dopri853.Rd | 3
man/ex_E5.Rd | 10
man/ex_andrews.Rd | 183 ++++++++---------
man/ex_beam.Rd | 139 +++++++------
man/ex_caraxis.Rd | 151 +++++++-------
man/ex_crank.Rd | 182 +++++++++--------
man/ex_emep.Rd | 204 ++++++++++---------
man/ex_fekete.Rd | 144 +++++++------
man/ex_hires.Rd | 196 +++++++++---------
man/ex_nand.Rd | 162 ++++++++-------
man/ex_orego.Rd | 15 +
man/ex_pleiades.Rd | 147 +++++++-------
man/ex_pollution.Rd | 179 +++++++++--------
man/ex_reference.Rd | 2
man/ex_ring.Rd | 213 ++++++++++----------
man/ex_rober.Rd | 9
man/ex_transistor.Rd | 164 ++++++++-------
man/ex_tube.Rd | 158 ++++++++-------
man/ex_twobit.Rd | 167 ++++++++-------
man/ex_vdpol.Rd | 17 +
man/ex_wheelset.Rd | 166 ++++++++-------
man/gamd.Rd | 4
man/mebdfi.Rd | 2
src/Ex_andrews.f | 49 +++-
src/Ex_beam.f | 4
src/Ex_crank.f | 8
src/Ex_emep.f | 67 +++++-
src/Ex_hires.f | 2
src/Ex_nand.f | 1
src/Ex_pleiades.f | 4
src/Ex_pollution.f | 52 ++++
src/Ex_ring.f | 4
src/Ex_transistor.f | 19 -
src/Ex_tube.f | 5
src/Ex_twobit.f | 55 +++--
src/Ex_wheelset.f | 7
src/bimd.f | 296 ++++++++++------------------
src/bimda.f | 10
src/call_dopri.c | 7
src/call_gam.c | 159 +++++++--------
src/call_mebdfi.c | 7
src/cashkarp.f | 416 +++++++++++++++++++--------------------
src/de_utils.c | 47 ++++
src/dopri6.f | 73 ++----
src/dopri8.f | 79 ++-----
src/errmsg.f |only
src/gamd.f90 | 202 +++++++++----------
src/mebdfi.f | 512 ++++++++++++-------------------------------------
83 files changed, 3249 insertions(+), 2753 deletions(-)
Title: Solar Photovoltaic Systems
Diff between solaR versions 0.33 dated 2012-08-16 and 0.36 dated 2013-06-13
Description: Calculation methods of solar radiation and performance of
photovoltaic systems from daily and intradaily irradiation data
sources.
Author: Oscar Perpiñán Lamigueiro
Maintainer: Oscar Perpiñán Lamigueiro
solaR-0.33/solaR/NEWS |only
solaR-0.36/solaR/ChangeLog |only
solaR-0.36/solaR/DESCRIPTION | 9
solaR-0.36/solaR/MD5 | 51 -
solaR-0.36/solaR/NAMESPACE | 217 ++--
solaR-0.36/solaR/R/AllMethods.R | 1316 -----------------------------
solaR-0.36/solaR/R/HQCurve.R | 28
solaR-0.36/solaR/R/NmgSFB.R | 179 +--
solaR-0.36/solaR/R/asDataFrame.R |only
solaR-0.36/solaR/R/asZoo.R |only
solaR-0.36/solaR/R/calcG0.R | 375 ++++----
solaR-0.36/solaR/R/compare.R |only
solaR-0.36/solaR/R/horizon.R |only
solaR-0.36/solaR/R/levelplot.R |only
solaR-0.36/solaR/R/losses.R |only
solaR-0.36/solaR/R/markovG0.R |only
solaR-0.36/solaR/R/mergeSolar.R |only
solaR-0.36/solaR/R/shadeplot.R |only
solaR-0.36/solaR/R/show.R |only
solaR-0.36/solaR/R/splom.R |only
solaR-0.36/solaR/R/window.R |only
solaR-0.36/solaR/R/writeSolar.R |only
solaR-0.36/solaR/R/xyplot.R |only
solaR-0.36/solaR/R/zzz.R | 2
solaR-0.36/solaR/data/MTM.RData |only
solaR-0.36/solaR/man/aguiar.Rd |only
solaR-0.36/solaR/man/calcG0.Rd | 93 +-
solaR-0.36/solaR/man/calcGef.Rd | 26
solaR-0.36/solaR/man/compare-methods.Rd | 1
solaR-0.36/solaR/man/local2UTC.Rd | 4
solaR-0.36/solaR/man/mergesolaR-methods.Rd | 1
solaR-0.36/solaR/man/prodGCPV.Rd | 32
solaR-0.36/solaR/man/readSIAR.Rd | 28
solaR-0.36/solaR/man/window-methods.Rd | 4
solaR-0.36/solaR/man/writeSolar.Rd |only
solaR-0.36/solaR/solaR-Ex.R | 239 ++---
36 files changed, 680 insertions(+), 1925 deletions(-)
Title: Positive definite sparse covariance estimators
Diff between PDSCE versions 1.1 dated 2012-08-25 and 1.2 dated 2013-06-13
Description: A package to compute and tune some positive definite and
sparse covariance estimators
Author: Adam J. Rothman
Maintainer: Adam J. Rothman
DESCRIPTION | 12 -
MD5 | 10 -
R/pdsoft.R | 18 +
R/safe.band.R | 9
man/PDSCE-package.Rd | 9
src/pdsc.c | 463 ++++++++++++++++++++++++++++++++++++---------------
6 files changed, 354 insertions(+), 167 deletions(-)
Title: Continuous Time Autoregressive Models
Diff between cts versions 1.0-15 dated 2013-04-08 and 1.0-16 dated 2013-06-13
Description: Continuous Time Autoregressive Models and the Kalman
Filter
Author: Fortran original by G. Tunnicliffe-Wilson and Zhu Wang, R port
by Zhu Wang with contribution from John Nash.
Maintainer: Zhu Wang
DESCRIPTION | 6 +++---
MD5 | 49 +++++++++++++++++++++++++------------------------
NEWS | 4 ++++
R/car.R | 8 +++++++-
inst/doc/kf.R |only
inst/doc/kf.pdf |binary
man/car.Rd | 2 +-
man/control.Rd | 8 +++++---
src/d1rply.f | 10 +++++-----
src/d2rply.f | 2 +-
src/d3rply.f | 4 ++--
src/d4rply.f | 2 +-
src/d5rply.f | 4 ++--
src/d7rply.f | 4 ++--
src/d9rply.f | 4 ++--
src/forecast.f | 6 +++++-
src/kfilsm.f | 3 ++-
src/kfilsm1.f | 3 ++-
src/resg0new.f | 3 ++-
src/resg1d.f | 3 ++-
src/resg1dpre.f | 3 ++-
src/resg1dpre1.f | 3 ++-
src/revg1.f | 3 ++-
src/setfor.f | 9 +++++----
src/setkfilsm.f | 3 ++-
src/setup1.f | 3 ++-
26 files changed, 88 insertions(+), 61 deletions(-)
Title: Companion to Applied Regression
Diff between car versions 2.0-17 dated 2013-05-05 and 2.0-18 dated 2013-06-13
Description: This package accompanies J. Fox and S. Weisberg, An R
Companion to Applied Regression, Second Edition, Sage, 2011.
Author: John Fox [aut, cre], Sanford Weisberg [aut], Douglas Bates
[ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly
[ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard
Heiberger [ctb], Rafael Laboissiere [ctb], Georges Monette
[ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian Ripley
[ctb], Achim Zeileis [ctb], R-Core [ctb]
Maintainer: John Fox
DESCRIPTION | 13 +++--
MD5 | 112 +++++++++++++++++++++++++-------------------------
NAMESPACE | 5 +-
NEWS | 6 ++
R/Boot.R | 2
R/densityPlot.R |only
data/AMSsurvey.rda |binary
data/Adler.rda |binary
data/Angell.rda |binary
data/Anscombe.rda |binary
data/Baumann.rda |binary
data/Bfox.rda |binary
data/Blackmoor.rda |binary
data/Burt.rda |binary
data/CanPop.rda |binary
data/Chile.rda |binary
data/Chirot.rda |binary
data/Cowles.rda |binary
data/Davis.rda |binary
data/DavisThin.rda |binary
data/Depredations.rda |binary
data/Duncan.rda |binary
data/Ericksen.rda |binary
data/Florida.rda |binary
data/Freedman.rda |binary
data/Friendly.rda |binary
data/Ginzberg.rda |binary
data/Greene.rda |binary
data/Guyer.rda |binary
data/Hartnagel.rda |binary
data/Highway1.rda |binary
data/Leinhardt.rda |binary
data/Mandel.rda |binary
data/Migration.rda |binary
data/Moore.rda |binary
data/Mroz.rda |binary
data/OBrienKaiser.rda |binary
data/Ornstein.rda |binary
data/Pottery.rda |binary
data/Prestige.rda |binary
data/Quartet.rda |binary
data/Robey.rda |binary
data/SLID.rda |binary
data/Sahlins.rda |binary
data/Salaries.rda |binary
data/Soils.rda |binary
data/States.rda |binary
data/Transact.rda |binary
data/UN.rda |binary
data/USPop.rda |binary
data/Vocab.rda |binary
data/WeightLoss.rda |binary
data/Womenlf.rda |binary
data/Wool.rda |binary
man/car-package.Rd | 4 -
man/densityPlot.Rd |only
man/scatter3d.Rd | 5 +-
man/scatterplot.Rd | 3 -
58 files changed, 83 insertions(+), 67 deletions(-)