Title: S3 Infrastructure for Regular and Irregular Time Series (Z's
ordered observations)
Diff between zoo versions 1.7-9 dated 2012-11-04 and 1.7-10 dated 2013-06-14
Description: An S3 class with methods for totally ordered indexed
observations. It is particularly aimed at irregular time series
of numeric vectors/matrices and factors. zoo's key design goals
are independence of a particular index/date/time class and
consistency with ts and base R by providing methods to extend
standard generics.
Author: Achim Zeileis [aut, cre], Gabor Grothendieck [aut], Jeffrey A.
Ryan [aut], Felix Andrews [ctb]
Maintainer: Achim Zeileis
DESCRIPTION | 11 ++---
MD5 | 61 +++++++++++++++--------------
NAMESPACE | 71 ++++++++++++++++++++++++++--------
NEWS | 31 ++++++++++++++
R/aggregate.zoo.R | 5 +-
R/ggplot2.zoo.R | 31 +++++++++++++-
R/merge.zoo.R | 12 +++--
R/na.fill.R | 4 -
R/plot.zoo.R | 2
R/yearmon.R | 28 +++++++++----
R/yearqtr.R | 28 +++++++++----
R/zoo.R | 6 ++
inst/doc/zoo-design.R |only
inst/doc/zoo-design.pdf |binary
inst/doc/zoo-faq.R |only
inst/doc/zoo-faq.Rnw | 66 +++++++++++++++++--------------
inst/doc/zoo-faq.pdf |binary
inst/doc/zoo-quickref.R |only
inst/doc/zoo-quickref.pdf |binary
inst/doc/zoo-read.R |only
inst/doc/zoo-read.pdf |binary
inst/doc/zoo.R |only
inst/doc/zoo.pdf |binary
man/ggplot2.zoo.Rd | 57 +++++++++++++++++++--------
man/yearmon.Rd | 1
man/yearqtr.Rd | 1
man/zoo.Rd | 1
man/zooreg.Rd | 3 -
tests/Examples/zoo-Ex.Rout.save | 68 +++++++++++++++++++-------------
tests/as.Date.Rout.save | 18 +++-----
tests/bugfixes.Rout.save | 9 +---
tests/vignette-zoo-quickref.Rout.save | 11 ++---
tests/vignette-zoo.Rout.save | 20 ++++-----
vignettes/zoo-faq.Rnw | 66 +++++++++++++++++--------------
34 files changed, 399 insertions(+), 212 deletions(-)
Title: Log-Gaussian Cox Process
Diff between lgcp versions 1.3-1 dated 2013-06-11 and 1.3-2 dated 2013-06-14
Description: Spatial and spatio-temporal modelling of point patterns
using the log-Gaussian Cox process
Author: B. M. Taylor, T. M. Davies, B. S. Rowlingson, P. J. Diggle.
Additional code contributions from E. Pebesma.
Maintainer: Benjamin M. Taylor
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
NEWS | 8 ++++++++
R/SpatioTemporalPlusParameters.R | 32 +++++++++++++++++++++++---------
R/lgcpMethods.R | 2 +-
5 files changed, 39 insertions(+), 17 deletions(-)
Title: Analysis of binary character evolution
Diff between corHMM versions 1.10 dated 2013-05-13 and 1.11 dated 2013-06-14
Description: Fits a hidden rates model that allows different transition
rate classes on different portions of a phylogeny by treating
rate classes as hidden states in a Markov process and various
other functions for evaluating models of binary character
evolution.
Author: Jeremy M. Beaulieu
Maintainer: Jeremy Beaulieu
DESCRIPTION | 13 ++---
MD5 | 12 ++---
R/ancRECON.R | 69 ++++++++++-------------------
R/corHMM.R | 124 ++++++++++++++++++++++++++++++++++++++++++++++++-----
R/rate.mat.maker.R | 8 +++
man/corDISC.Rd | 2
man/corHMM.Rd | 2
7 files changed, 158 insertions(+), 72 deletions(-)
Title: Selection and/or Smoothing of Ordinal Predictors
Diff between ordPens versions 0.1-7 dated 2011-11-02 and 0.2-1 dated 2013-06-14
Description: Selection and/or smoothing of ordinally scaled independent
variables using a group lasso or generalized ridge penalty
Author: Jan Gertheiss
Maintainer: Jan Gertheiss
DESCRIPTION | 16 +-
MD5 | 25 ++--
NAMESPACE |only
R/ordAOV.R |only
R/ordPens-internal.R | 257 +++++++++++++++++++++++++++++++++++++++++++++++-
R/ordSelect.R | 2
R/ordSmooth.R | 2
R/plot.ordPen.R | 6 -
man/ordAOV.Rd |only
man/ordPens-internal.Rd | 8 +
man/ordPens-package.Rd | 27 ++---
man/ordSelect.Rd | 18 +--
man/ordSmooth.Rd | 7 -
man/plot.ordPen.Rd | 2
man/predict.ordPen.Rd | 2
15 files changed, 320 insertions(+), 52 deletions(-)
Title: Graph Based Multiple Comparison Procedures
Diff between gMCP versions 0.8-1 dated 2013-04-06 and 0.8-3 dated 2013-06-14
Description: This package provides functions and a graphical user
interface for graphical described multiple test procedures.
Author: Kornelius Rohmeyer, Florian Klinglmueller (parametric tests,
adaptive designs), Bjoern Bornkamp (power simulations)
Maintainer: Kornelius Rohmeyer
gMCP-0.8-1/gMCP/inst/doc/gMCP.loa |only
gMCP-0.8-1/gMCP/inst/doc/gMCP.lof |only
gMCP-0.8-1/gMCP/inst/doc/gMCP.lot |only
gMCP-0.8-3/gMCP/DESCRIPTION | 6
gMCP-0.8-3/gMCP/MD5 | 74 ++---
gMCP-0.8-3/gMCP/NEWS | 34 ++
gMCP-0.8-3/gMCP/R/calcPower.R | 15 -
gMCP-0.8-3/gMCP/R/graph2latex.R | 143 +++++++++-
gMCP-0.8-3/gMCP/R/graphTest.R | 4
gMCP-0.8-3/gMCP/R/misc.R | 2
gMCP-0.8-3/gMCP/R/startGUIs.R | 17 -
gMCP-0.8-3/gMCP/TODO | 32 --
gMCP-0.8-3/gMCP/inst/doc/AQuickStart.R |only
gMCP-0.8-3/gMCP/inst/doc/AQuickStart.Rnw | 2
gMCP-0.8-3/gMCP/inst/doc/AQuickStart.pdf |binary
gMCP-0.8-3/gMCP/inst/doc/Makefile | 2
gMCP-0.8-3/gMCP/inst/doc/figure/unnamed-chunk-23.pdf |binary
gMCP-0.8-3/gMCP/inst/doc/gMCP.R |only
gMCP-0.8-3/gMCP/inst/doc/gMCP.pdf |binary
gMCP-0.8-3/gMCP/inst/doc/gMCP/gMCP.Rnw | 2
gMCP-0.8-3/gMCP/inst/doc/parametric.R |only
gMCP-0.8-3/gMCP/inst/doc/parametric.Rnw | 2
gMCP-0.8-3/gMCP/inst/doc/parametric.pdf |binary
gMCP-0.8-3/gMCP/inst/java-src/org/af/gMCP/config/GeneralConfig.java | 9
gMCP-0.8-3/gMCP/inst/java-src/org/af/gMCP/gui/CreateGraphGUI.java | 2
gMCP-0.8-3/gMCP/inst/java-src/org/af/gMCP/gui/MenuBarMGraph.java | 4
gMCP-0.8-3/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/PowerDialogParameterUncertainty.java | 110 ++++++-
gMCP-0.8-3/gMCP/inst/java-src/org/af/gMCP/gui/graph/Edge.java | 9
gMCP-0.8-3/gMCP/inst/java-src/org/af/gMCP/gui/graph/NetList.java | 2
gMCP-0.8-3/gMCP/inst/java-src/org/af/gMCP/gui/graph/Node.java | 5
gMCP-0.8-3/gMCP/inst/java/gsrmtp.jar |binary
gMCP-0.8-3/gMCP/inst/unitTests/runit.LaTeX.R | 5
gMCP-0.8-3/gMCP/inst/unitTests/runit.power.R | 2
gMCP-0.8-3/gMCP/man/calcPower.Rd | 15 -
gMCP-0.8-3/gMCP/man/confint.Rd | 3
gMCP-0.8-3/gMCP/man/corMatWizard.Rd | 3
gMCP-0.8-3/gMCP/man/doUnitTestsForGMCP.Rd | 6
gMCP-0.8-3/gMCP/man/graph2latex.Rd | 6
gMCP-0.8-3/gMCP/man/graphGUI.Rd | 33 +-
gMCP-0.8-3/gMCP/man/graphTest.Rd | 10
gMCP-0.8-3/gMCP/man/secondStageTest.Rd | 3
41 files changed, 422 insertions(+), 140 deletions(-)
Title: Response surface analysis
Diff between RSA versions 0.6.1 dated 2013-03-28 and 0.7.1 dated 2013-06-14
Description: Advanced response surface analysis. The main function RSA
compares several nested models (full polynomial, shifted and
rotated squared differences, shifted squared differences,
rising ridge surfaces, basic squared differences) and provides
plotting functions for 3d wireframe surfaces, interactive 3d
plots, and contour plots. Calculates many surface parameters
(a1 to a4, principal axes, stationary point, eigenvalues) and
provides standard, robust, or bootstrapped standard errors and
confidence intervals for them.
Author: Felix Schönbrodt
Maintainer: Felix Schönbrodt
DESCRIPTION | 31 +++++-----
MD5 | 30 +++++----
NAMESPACE | 1
NEWS | 30 +++++++++
R/RSA.R | 170 +++++++++++++++++++++-----------------------------------
R/bootRSA.R | 10 +--
R/compare.R | 60 +++++++++++++++++--
R/demoRSA.R | 2
R/getPar.R | 13 +++-
R/movieRSA.R |only
R/plot.RSA.R | 90 +++++++++++++++++++----------
R/print.RSA.R | 2
man/RSA.Rd | 23 +++++--
man/bootRSA.Rd | 10 +--
man/getPar.Rd | 4 -
man/movieRSA.Rd |only
man/plotRSA.Rd | 30 ++++-----
17 files changed, 300 insertions(+), 206 deletions(-)
Title: MultiChIPmixHMM
Diff between MultiChIPmixHMM versions 3.0 dated 2013-02-04 and 4.0 dated 2013-06-14
More information about MultiChIPmixHMM at CRAN
Description: Linear regression mixture model to ChIP-chip data
analysis, taking into account the dependence (HMM), and for
multiple biological samples.
Author: Caroline Berard
Maintainer: Caroline Berard
MultiChIPmixHMM-3.0/MultiChIPmixHMM/data/dataHMM_Rep1.RData |only
MultiChIPmixHMM-3.0/MultiChIPmixHMM/data/dataHMM_Rep2.RData |only
MultiChIPmixHMM-3.0/MultiChIPmixHMM/man/dataHMM_Rep1.Rd |only
MultiChIPmixHMM-3.0/MultiChIPmixHMM/man/dataHMM_Rep2.Rd |only
MultiChIPmixHMM-4.0/MultiChIPmixHMM/DESCRIPTION | 10 +-
MultiChIPmixHMM-4.0/MultiChIPmixHMM/MD5 | 31 ++++---
MultiChIPmixHMM-4.0/MultiChIPmixHMM/R/Internal.R | 48 +++++++++++-
MultiChIPmixHMM-4.0/MultiChIPmixHMM/R/multiChIPmix.R | 31 +++----
MultiChIPmixHMM-4.0/MultiChIPmixHMM/R/multiChIPmixHMM.R | 18 +++-
MultiChIPmixHMM-4.0/MultiChIPmixHMM/data/data_Rep1.RData |binary
MultiChIPmixHMM-4.0/MultiChIPmixHMM/data/data_Rep2.RData |binary
MultiChIPmixHMM-4.0/MultiChIPmixHMM/inst |only
MultiChIPmixHMM-4.0/MultiChIPmixHMM/man/data_Rep1.Rd | 22 ++---
MultiChIPmixHMM-4.0/MultiChIPmixHMM/man/data_Rep2.Rd | 22 ++---
MultiChIPmixHMM-4.0/MultiChIPmixHMM/man/multiChIPmix.Rd | 25 +++---
MultiChIPmixHMM-4.0/MultiChIPmixHMM/man/multiChIPmixHMM.Rd | 29 ++++---
MultiChIPmixHMM-4.0/MultiChIPmixHMM/vignettes |only
MultiChIPmixHMM-4.0/MultiChIPmixHMM/zzz.r |only
18 files changed, 145 insertions(+), 91 deletions(-)
Permanent link
Title: Calibration functions for analytical chemistry
Diff between chemCal versions 0.1-28 dated 2012-09-12 and 0.1-29 dated 2013-06-14
Description: chemCal provides simple functions for plotting linear
calibration functions and estimating standard errors for
measurements according to the Handbook of Chemometrics and
Qualimetrics: Part A by Massart et al. There are also functions
estimating the limit of detection (LOD) and limit of
quantification (LOQ). The functions work on model objects from
- optionally weighted - linear regression (lm) or robust linear
regression (rlm from the MASS package).
Author: Johannes Ranke
Maintainer: Johannes Ranke
DESCRIPTION | 13 +++++++------
MD5 | 10 +++++-----
data/din32645.rda |binary
inst/doc/chemCal.pdf |binary
vignettes/chemCal-001.pdf |binary
vignettes/chemCal-002.pdf |binary
6 files changed, 12 insertions(+), 11 deletions(-)
Title: Tools to analyse repertory grid data
Diff between OpenRepGrid versions 0.1.7 dated 2013-05-26 and 0.1.8 dated 2013-06-14
Description: Tools to analyse repertory grid data
Author: Mark Heckmann
Maintainer: Mark Heckmann
CHANGELOG | 10 ++++-
DESCRIPTION | 8 ++--
MD5 | 17 ++++----
NAMESPACE | 39 ++++++++++---------
NEWS | 4 ++
R/calc.r | 53 +++++++++++++++++---------
R/import.r | 65 ++++++++++++++++++++++++++------
man/clusterBoot.Rd | 67 ++++++++++++++++++++++------------
man/importTxtInternal.Rd | 3 +
man/multigridFileToSinglegridFiles.Rd |only
10 files changed, 181 insertions(+), 85 deletions(-)
Title: Miscellaneous Functions
Diff between miscF versions 0.1-1 dated 2013-05-01 and 0.1-2 dated 2013-06-14
Description: Various functions for random number generation, density
estimation, classification, curve fitting, and spatial data
analysis.
Author: Dai Feng
Maintainer: Dai Feng
ChangeLog | 11 ++
DESCRIPTION | 10 +-
MD5 | 11 +-
R/mvt.mcmc.R | 202 ++++++++++++-------------------------------------------
man/mvt.mcmc.Rd | 2
src/Makevars |only
src/Makevars.win |only
src/mvtmcmc.cpp |only
8 files changed, 68 insertions(+), 168 deletions(-)
Title: Least-squares means
Diff between lsmeans versions 1.06-05 dated 2013-02-14 and 1.06-06 dated 2013-06-14
Description: This package provides the function 'lsmeans' for
outputting so-called least-squares means for factor
combinations in an 'lm', 'lme', or 'lmer' object. It can also
compute contrasts or linear combinations of these least-squares
means, and several standard contrast families are provided.
Author: Russell V. Lenth
Maintainer: Russ Lenth
DESCRIPTION | 9 +++++----
MD5 | 9 +++++----
R/lsmeans.R | 19 +++++++------------
inst/NEWS | 5 +++++
inst/doc/using-lsmeans.R |only
lsmeans-Ex.R | 25 ++++++++++++++++++++++---
6 files changed, 44 insertions(+), 23 deletions(-)
Title: Foreach parallel adaptor for the Rmpi package
Diff between doMPI versions 0.1-5 dated 2010-08-10 and 0.2 dated 2013-06-14
Description: Provides a parallel backend for the %dopar% function using
the Rmpi package.
Author: Steve Weston
Maintainer: Steve Weston
doMPI-0.1-5/doMPI/R/nwsworkers.R |only
doMPI-0.1-5/doMPI/README |only
doMPI-0.1-5/doMPI/man/startNWScluster.Rd |only
doMPI-0.2/doMPI/DESCRIPTION | 16 +++---
doMPI-0.2/doMPI/MD5 |only
doMPI-0.2/doMPI/NAMESPACE | 11 ++--
doMPI-0.2/doMPI/NEWS | 12 ++++
doMPI-0.2/doMPI/R/doMPI.R | 66 ++++++++++++++++++++++---
doMPI-0.2/doMPI/R/dompiWorkerLoop.R | 60 ++++++++++++++++++----
doMPI-0.2/doMPI/R/exportDoMPI.R |only
doMPI-0.2/doMPI/R/master.R | 21 ++++++-
doMPI-0.2/doMPI/R/mpiworkers.R | 8 +--
doMPI-0.2/doMPI/R/profile.R | 2
doMPI-0.2/doMPI/R/rng.R |only
doMPI-0.2/doMPI/R/workers.R | 2
doMPI-0.2/doMPI/inst/RMPIworker.R | 31 +++--------
doMPI-0.2/doMPI/inst/doc/doMPI.R |only
doMPI-0.2/doMPI/inst/doc/doMPI.Rnw | 49 +++++++-----------
doMPI-0.2/doMPI/inst/doc/doMPI.pdf |binary
doMPI-0.2/doMPI/inst/examples/clusterexport.R |only
doMPI-0.2/doMPI/inst/examples/clusterexport2.R |only
doMPI-0.2/doMPI/inst/examples/file.R | 3 +
doMPI-0.2/doMPI/inst/examples/file2.R |only
doMPI-0.2/doMPI/inst/examples/initEnvir.R | 22 ++++++--
doMPI-0.2/doMPI/inst/examples/pi2.R | 2
doMPI-0.2/doMPI/inst/examples/prng.R |only
doMPI-0.2/doMPI/inst/examples/prng2.R |only
doMPI-0.2/doMPI/inst/examples/resample.R | 1
doMPI-0.2/doMPI/man/doMPI-package.Rd | 22 ++++++++
doMPI-0.2/doMPI/man/dompiWorkerLoop.Rd | 3 -
doMPI-0.2/doMPI/man/exportDoMPI.Rd |only
doMPI-0.2/doMPI/man/registerDoMPI.Rd | 3 -
doMPI-0.2/doMPI/man/setRngDoMPI.Rd |only
doMPI-0.2/doMPI/man/startMPIcluster.Rd | 4 -
doMPI-0.2/doMPI/test |only
doMPI-0.2/doMPI/vignettes |only
36 files changed, 236 insertions(+), 102 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-03 0.6
2013-04-03 0.7
2012-09-18 0.4
2012-06-21 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-23 0.48
2012-04-21 0.47
2012-01-02 0.46
2011-10-20 0.45
2011-03-24 0.43
2010-12-23 0.41
2010-11-18 0.40
2010-10-09 0.34
2010-07-24 0.32
2010-01-05 0.20.2
2009-12-28 0.20.1