Title: Two-table ExPosition
Diff between TExPosition versions 1.1 dated 2012-07-12 and 2.0.2 dated 2013-06-15
Description: TExPosition is an extension of ExPosition for two table
analyses, specifically, discriminant analyses.
Author: Derek Beaton, Jenny Rieck, Cherise R. Chin Fatt, Herve Abdi
Maintainer: Derek Beaton
TExPosition-1.1/TExPosition/R/TExPosition-internal.R |only
TExPosition-1.1/TExPosition/R/supplementaryRows.R |only
TExPosition-1.1/TExPosition/R/tepGraphHandler.R |only
TExPosition-1.1/TExPosition/man/supplementaryRows.Rd |only
TExPosition-2.0.2/TExPosition/DESCRIPTION | 11 -
TExPosition-2.0.2/TExPosition/MD5 | 26 +-
TExPosition-2.0.2/TExPosition/NAMESPACE | 2
TExPosition-2.0.2/TExPosition/R/print.tepDICA.R | 11 -
TExPosition-2.0.2/TExPosition/R/tepBADA.R | 34 +--
TExPosition-2.0.2/TExPosition/R/tepDICA.R | 10 -
TExPosition-2.0.2/TExPosition/R/tepGraphs.R | 136 ++++++++++-----
TExPosition-2.0.2/TExPosition/R/texpoDesignCheck.R | 7
TExPosition-2.0.2/TExPosition/man/TExPosition-package.Rd | 6
TExPosition-2.0.2/TExPosition/man/tepBADA.Rd | 13 -
TExPosition-2.0.2/TExPosition/man/tepDICA.Rd | 8
TExPosition-2.0.2/TExPosition/man/tepGraphs.Rd | 27 ++
16 files changed, 176 insertions(+), 115 deletions(-)
Title: Analysis of Quaternary Science Data
Diff between rioja versions 0.7-3 dated 2012-01-05 and 0.8-3 dated 2013-06-15
Description: Functions for the analysis of Quaternary science data,
including constrained clustering, WA, WAPLS, IKFA, MLRC and MAT
transfer functions, and stratigraphic diagrams.
Author: Steve Juggins
Maintainer: Steve Juggins
DESCRIPTION | 15 ++++----
MD5 | 62 ++++++++++++++++++------------------
NAMESPACE | 1
R/IKFA.r | 8 ++--
R/LWR.r | 10 ++---
R/MAT.r | 9 +++--
R/MLRC.r | 57 ++++++++++++++++++++-------------
R/PTF.r | 61 ++++++++++++++++++++++++++++++-----
R/WA.r | 13 ++++---
R/WAPLS.r | 54 ++++++++++++++++++-------------
R/internals.r | 2 -
R/strat.plot.r | 82 +++++++++++++++++++++++++++++++++++-------------
R/zzz.r | 2 -
inst/CITATION | 11 +++---
man/IKFA.Rd | 4 +-
man/LWR.Rd | 6 ++-
man/MAT.Rd | 4 +-
man/MLRC.Rd | 5 +-
man/PTF.Rd | 2 -
man/RLGH.Rd | 4 +-
man/WA.Rd | 10 +++--
man/WAPLS.Rd | 8 ++--
man/chclust.Rd | 2 -
man/compare.datasets.Rd | 2 -
man/interp.dataset.Rd | 2 -
man/rioja.package.Rd | 4 +-
man/strat.plot.Rd | 14 +++++---
src/chclust.cpp | 7 ++--
src/mat.cpp | 4 +-
src/mlrc.cpp | 9 ++++-
src/rdfmt.c | 7 +++-
src/wa.cpp | 5 ++
32 files changed, 313 insertions(+), 173 deletions(-)
Title: Multi-table ExPosition
Diff between MExPosition versions 1.0 dated 2012-07-13 and 2.0.3 dated 2013-06-15
Description: MExPosition is for descriptive (i.e., fixed-effects)
multi-table multivariate analysis the singular value
decomposition.
Author: Cherise R. Chin Fatt, Derek Beaton, Herve Abdi.
Maintainer: Cherise R. Chin Fatt
MExPosition-1.0/MExPosition/R/MExPosition-internal.R |only
MExPosition-1.0/MExPosition/R/matrixTrace.R |only
MExPosition-1.0/MExPosition/R/mpGraphHandler.r |only
MExPosition-1.0/MExPosition/R/print.mpDISTATIS.R |only
MExPosition-1.0/MExPosition/R/rvCoeff.R |only
MExPosition-1.0/MExPosition/man/matrixTrace.Rd |only
MExPosition-1.0/MExPosition/man/mpDISTATIS.Rd |only
MExPosition-1.0/MExPosition/man/mpDISTATIS.core.Rd |only
MExPosition-2.0.3/MExPosition/DESCRIPTION | 11
MExPosition-2.0.3/MExPosition/MD5 | 141 +++++--
MExPosition-2.0.3/MExPosition/NAMESPACE | 56 ++
MExPosition-2.0.3/MExPosition/R/mpANISOSTATIS.core.R | 187 +++-------
MExPosition-2.0.3/MExPosition/R/mpANISOTATIS.R |only
MExPosition-2.0.3/MExPosition/R/mpCANOSTATIS.R |only
MExPosition-2.0.3/MExPosition/R/mpCANOSTATIS.core.R |only
MExPosition-2.0.3/MExPosition/R/mpCOVSTATIS.R |only
MExPosition-2.0.3/MExPosition/R/mpCOVSTATIS.core.R |only
MExPosition-2.0.3/MExPosition/R/mpDISTATIS.R | 40 +-
MExPosition-2.0.3/MExPosition/R/mpDISTATIS.core.r | 157 +++-----
MExPosition-2.0.3/MExPosition/R/mpDOACT.STATIS.R |only
MExPosition-2.0.3/MExPosition/R/mpDOACT.STATIS.core.R |only
MExPosition-2.0.3/MExPosition/R/mpGraphs.R | 166 ++++++--
MExPosition-2.0.3/MExPosition/R/mpKPlus1STATIS.R |only
MExPosition-2.0.3/MExPosition/R/mpKPlus1STATIS.core.R |only
MExPosition-2.0.3/MExPosition/R/mpMFA.R | 19 -
MExPosition-2.0.3/MExPosition/R/mpMahalanobis.R |only
MExPosition-2.0.3/MExPosition/R/mpMultitable.R |only
MExPosition-2.0.3/MExPosition/R/mpOutputHandler.R | 18
MExPosition-2.0.3/MExPosition/R/mpPTA.R |only
MExPosition-2.0.3/MExPosition/R/mpPTA.core.R |only
MExPosition-2.0.3/MExPosition/R/mpSTATIS.R | 145 ++++---
MExPosition-2.0.3/MExPosition/R/mpSTATIS.columnPreproc.R | 3
MExPosition-2.0.3/MExPosition/R/mpSTATIS.core.R | 170 ++++-----
MExPosition-2.0.3/MExPosition/R/mpSTATIS.optimize.R | 51 +-
MExPosition-2.0.3/MExPosition/R/mpSTATIS.preprocess.R | 27 -
MExPosition-2.0.3/MExPosition/R/mpSTATIS.rowPreproc.R | 2
MExPosition-2.0.3/MExPosition/R/mpSTATIS.tablePreproc.R | 103 ++---
MExPosition-2.0.3/MExPosition/R/mpSumPCA.R |only
MExPosition-2.0.3/MExPosition/R/print.KPlus1.statis.compromise.R |only
MExPosition-2.0.3/MExPosition/R/print.KPlus1.statis.innerproduct.R |only
MExPosition-2.0.3/MExPosition/R/print.KPlus1.statis.overview.R |only
MExPosition-2.0.3/MExPosition/R/print.KPlus1.statis.table.R |only
MExPosition-2.0.3/MExPosition/R/print.covstatis.compromise.R |only
MExPosition-2.0.3/MExPosition/R/print.covstatis.innerproduct.R |only
MExPosition-2.0.3/MExPosition/R/print.covstatis.overview.R |only
MExPosition-2.0.3/MExPosition/R/print.covstatis.table.R |only
MExPosition-2.0.3/MExPosition/R/print.distatis.compromise.R | 20 -
MExPosition-2.0.3/MExPosition/R/print.distatis.innerproduct.R | 17
MExPosition-2.0.3/MExPosition/R/print.distatis.overview.R | 5
MExPosition-2.0.3/MExPosition/R/print.distatis.table.R | 21 -
MExPosition-2.0.3/MExPosition/R/print.doact.statis.compromise.R |only
MExPosition-2.0.3/MExPosition/R/print.doact.statis.innerproduct.R |only
MExPosition-2.0.3/MExPosition/R/print.doact.statis.overview.R |only
MExPosition-2.0.3/MExPosition/R/print.doact.statis.table.R |only
MExPosition-2.0.3/MExPosition/R/print.mexPosition.Output.R | 3
MExPosition-2.0.3/MExPosition/R/print.mpANISOSTATIS.R |only
MExPosition-2.0.3/MExPosition/R/print.mpCOVSTATIS.R |only
MExPosition-2.0.3/MExPosition/R/print.mpDISTATIS.r |only
MExPosition-2.0.3/MExPosition/R/print.mpDOACT.STATIS.R |only
MExPosition-2.0.3/MExPosition/R/print.mpKPlus1STATIS.R |only
MExPosition-2.0.3/MExPosition/R/print.mpSTATIS.R | 8
MExPosition-2.0.3/MExPosition/R/print.statis.compromise.R |only
MExPosition-2.0.3/MExPosition/R/print.statis.innerproduct.R | 6
MExPosition-2.0.3/MExPosition/R/print.statis.table.R | 18
MExPosition-2.0.3/MExPosition/man/MExPosition-package.Rd | 8
MExPosition-2.0.3/MExPosition/man/mpANISOSTATIS.Rd |only
MExPosition-2.0.3/MExPosition/man/mpANISOSTATIS.core.Rd | 63 +--
MExPosition-2.0.3/MExPosition/man/mpCANOSTATIS.Rd |only
MExPosition-2.0.3/MExPosition/man/mpCANOSTATIS.core.Rd |only
MExPosition-2.0.3/MExPosition/man/mpCOVSTATIS.Rd |only
MExPosition-2.0.3/MExPosition/man/mpCOVSTATIS.core.Rd |only
MExPosition-2.0.3/MExPosition/man/mpDISTATIS.core.rd |only
MExPosition-2.0.3/MExPosition/man/mpDISTATIS.rd |only
MExPosition-2.0.3/MExPosition/man/mpDOACT.STATIS.Rd |only
MExPosition-2.0.3/MExPosition/man/mpDOACT.STATIS.core.Rd |only
MExPosition-2.0.3/MExPosition/man/mpGraphs.Rd | 13
MExPosition-2.0.3/MExPosition/man/mpKPlus1STATIS.Rd |only
MExPosition-2.0.3/MExPosition/man/mpKPlus1STATIS.core.Rd |only
MExPosition-2.0.3/MExPosition/man/mpMFA.Rd | 32 +
MExPosition-2.0.3/MExPosition/man/mpMahalanobis.Rd |only
MExPosition-2.0.3/MExPosition/man/mpMultitable.Rd |only
MExPosition-2.0.3/MExPosition/man/mpPTA.Rd |only
MExPosition-2.0.3/MExPosition/man/mpPTA.core.Rd |only
MExPosition-2.0.3/MExPosition/man/mpSTATIS.Rd | 33 +
MExPosition-2.0.3/MExPosition/man/mpSTATIS.columnPreproc.Rd | 7
MExPosition-2.0.3/MExPosition/man/mpSTATIS.core.Rd | 41 +-
MExPosition-2.0.3/MExPosition/man/mpSTATIS.optimize.Rd | 7
MExPosition-2.0.3/MExPosition/man/mpSTATIS.preprocess.Rd | 15
MExPosition-2.0.3/MExPosition/man/mpSTATIS.rowPreproc.Rd | 7
MExPosition-2.0.3/MExPosition/man/mpSTATIS.tablePreproc.Rd | 4
MExPosition-2.0.3/MExPosition/man/mpSumPCA.Rd |only
MExPosition-2.0.3/MExPosition/man/print.KPlus1.statis.compromise.Rd |only
MExPosition-2.0.3/MExPosition/man/print.KPlus1.statis.innerproduct.Rd |only
MExPosition-2.0.3/MExPosition/man/print.KPlus1.statis.overview.Rd |only
MExPosition-2.0.3/MExPosition/man/print.KPlus1.statis.table.Rd |only
MExPosition-2.0.3/MExPosition/man/print.covstatis.compromise.Rd |only
MExPosition-2.0.3/MExPosition/man/print.covstatis.innerproduct.Rd |only
MExPosition-2.0.3/MExPosition/man/print.covstatis.overview.Rd |only
MExPosition-2.0.3/MExPosition/man/print.covstatis.table.Rd |only
MExPosition-2.0.3/MExPosition/man/print.doact.statis.compromise.Rd |only
MExPosition-2.0.3/MExPosition/man/print.doact.statis.innerproduct.Rd |only
MExPosition-2.0.3/MExPosition/man/print.doact.statis.overview.Rd |only
MExPosition-2.0.3/MExPosition/man/print.doact.statis.table.Rd |only
MExPosition-2.0.3/MExPosition/man/print.mpANISOSTATIS.Rd |only
MExPosition-2.0.3/MExPosition/man/print.mpCOVSTATIS.Rd |only
MExPosition-2.0.3/MExPosition/man/print.mpDOACT.STATIS.Rd |only
MExPosition-2.0.3/MExPosition/man/print.mpKPlus1STATIS.Rd |only
MExPosition-2.0.3/MExPosition/man/print.statis.compromise.Rd |only
108 files changed, 912 insertions(+), 712 deletions(-)
Title: Pretty scientific plotting with minor-tick and log minor-tick
support
Diff between magicaxis versions 1.4 dated 2013-04-03 and 1.5 dated 2013-06-15
Description: Functions to make useful (and pretty) plots for scientific
plotting. Additional plotting features are added for base
plotting, with particular emphasis on making attractive log
axis plots.
Author: Aaron Robotham
Maintainer: Aaron Robotham
CHANGELOG | 25 ++++++++++++++++++++---
DESCRIPTION | 8 +++----
MD5 | 22 ++++++++++++---------
R/magaxis.R | 23 +++++++++++++++-------
R/magerr.R |only
R/maglab.R | 49 ++++++++++++++++++++++++++++++++++++-----------
R/magmap.R |only
R/magplot.R | 4 +--
man/magaxis.Rd | 12 +++++++++--
man/magerr.Rd |only
man/magicaxis-package.Rd | 4 +--
man/maglab.Rd | 11 ++++++++--
man/magmap.Rd |only
man/magplot.Rd | 10 ++++++++-
14 files changed, 124 insertions(+), 44 deletions(-)
Title: Analysis of Overdispersed Data using S3 methods
Diff between aods3 versions 0.3-11 dated 2013-05-29 and 0.4.0 dated 2013-06-15
Description: This package provides functions to analyse overdispersed
counts or proportions. These functions should be considered as
complements to more sophisticated methods such as generalized
estimating equations (GEE) or generalized linear mixed effect
models (GLMM). Package aods3 is an S3 re-implementation of the
deprecated S4 package aod.
Author: Matthieu Lesnoff
Maintainer: Renaud Lancelot
DESCRIPTION | 8 +-
MD5 | 36 +++++------
R/AIC.aodml.R | 11 ++-
R/anova.aodml.R | 41 +++++++-----
R/aodml.R | 152 +++++++++++++++++++++---------------------------
R/deviance.R | 2
R/drs.R | 6 +
R/fitted.R | 8 +-
R/iccbin.R | 4 -
R/invlink.R | 7 +-
R/link.R | 5 -
R/logLik.R | 4 -
R/predict.R | 9 +-
R/print.anova.aodml.R | 6 +
R/print.aodml.R | 3
R/print.summary.aodml.R | 2
R/vcov.R | 4 -
R/wald.test.R | 4 -
man/aodml.Rd | 120 ++++++++++++++++++++++---------------
19 files changed, 232 insertions(+), 200 deletions(-)
Title: Clustering Indices
Diff between clusterCrit versions 1.2.1 dated 2013-04-25 and 1.2.2 dated 2013-06-15
Description: compute clustering validation indices
Author: Bernard Desgraupes (University of Paris Ouest - Lab Modal'X)
Maintainer: Bernard Desgraupes
clusterCrit-1.2.1/clusterCrit/inst/doc/clusterCrit.R |only
clusterCrit-1.2.2/clusterCrit/DESCRIPTION | 8
clusterCrit-1.2.2/clusterCrit/MD5 | 19 -
clusterCrit-1.2.2/clusterCrit/R/main.R | 5
clusterCrit-1.2.2/clusterCrit/build/clusterCrit.pdf |binary
clusterCrit-1.2.2/clusterCrit/build/partial.rdb |binary
clusterCrit-1.2.2/clusterCrit/inst/unitTests/Makefile | 6
clusterCrit-1.2.2/clusterCrit/src/Makevars.in | 5
clusterCrit-1.2.2/clusterCrit/src/critCalc.f95 | 257 +++++++++---------
clusterCrit-1.2.2/clusterCrit/src/criteria.c | 110 ++++++-
clusterCrit-1.2.2/clusterCrit/src/criteria.h | 10
11 files changed, 257 insertions(+), 163 deletions(-)
Title: Basic Robust Statistics
Diff between robustbase versions 0.9-7 dated 2013-03-06 and 0.9-8 dated 2013-06-15
Description: "Essential" Robust Statistics. The goal is to provide
tools allowing to analyze data with robust methods. This
includes regression methodology including model selections and
multivariate statistics where we strive to cover the book
"Robust Statistics, Theory and Methods" by Maronna, Martin and
Yohai; Wiley 2006.
Author: Original code by many authors, notably Peter Rousseeuw and
Christophe Croux, see file 'Copyrights'; Valentin Todorov
Maintainer: Martin Maechler
robustbase-0.9-7/robustbase/man/glmrobMqle.control.Rd |only
robustbase-0.9-7/robustbase/man/tukeyChi.Rd |only
robustbase-0.9-8/robustbase/ChangeLog | 25
robustbase-0.9-8/robustbase/DESCRIPTION | 15
robustbase-0.9-8/robustbase/Done | 19
robustbase-0.9-8/robustbase/MD5 | 189 +--
robustbase-0.9-8/robustbase/NAMESPACE | 16
robustbase-0.9-8/robustbase/R/BYlogreg.R |only
robustbase-0.9-8/robustbase/R/MTestimador2.R |only
robustbase-0.9-8/robustbase/R/adjbox.R | 2
robustbase-0.9-8/robustbase/R/anova-glmrob.R | 1
robustbase-0.9-8/robustbase/R/anova.lmrob.R | 4
robustbase-0.9-8/robustbase/R/biweight-funs.R | 30
robustbase-0.9-8/robustbase/R/covMcd.R | 199 +--
robustbase-0.9-8/robustbase/R/glmrob.R | 68 -
robustbase-0.9-8/robustbase/R/glmrobMqle-DQD.R | 13
robustbase-0.9-8/robustbase/R/glmrobMqle.R | 101 +
robustbase-0.9-8/robustbase/R/lmrob.M.S.R | 31
robustbase-0.9-8/robustbase/R/lmrob.MM.R | 372 +++---
robustbase-0.9-8/robustbase/R/lmrob.R | 195 +--
robustbase-0.9-8/robustbase/R/ltsReg.R | 177 +-
robustbase-0.9-8/robustbase/R/nlrob.R | 8
robustbase-0.9-8/robustbase/R/plot.lmrob.R | 2
robustbase-0.9-8/robustbase/R/psi-rho-funs.R | 41
robustbase-0.9-8/robustbase/R/rrcov.control.R | 21
robustbase-0.9-8/robustbase/R/zzz.R | 6
robustbase-0.9-8/robustbase/TODO | 89 +
robustbase-0.9-8/robustbase/data/foodstamp.rda |only
robustbase-0.9-8/robustbase/experi-psi-rho-funs.R | 20
robustbase-0.9-8/robustbase/inst/doc/estimating.functions.R | 81 -
robustbase-0.9-8/robustbase/inst/doc/lmrob_simulation.R |only
robustbase-0.9-8/robustbase/inst/doc/lmrob_simulation.Rnw | 16
robustbase-0.9-8/robustbase/inst/doc/lmrob_simulation.bib | 51
robustbase-0.9-8/robustbase/inst/doc/lmrob_simulation.pdf |binary
robustbase-0.9-8/robustbase/inst/doc/psi-GGW.pdf |binary
robustbase-0.9-8/robustbase/inst/doc/psi-Hampel.pdf |binary
robustbase-0.9-8/robustbase/inst/doc/psi-Huber.pdf |binary
robustbase-0.9-8/robustbase/inst/doc/psi-LQQ.pdf |binary
robustbase-0.9-8/robustbase/inst/doc/psi-Welsh.pdf |binary
robustbase-0.9-8/robustbase/inst/doc/psi-bisquare.pdf |binary
robustbase-0.9-8/robustbase/inst/doc/psi-optimal.pdf |binary
robustbase-0.9-8/robustbase/inst/doc/psi_functions.R |only
robustbase-0.9-8/robustbase/inst/doc/psi_functions.Rnw | 331 +++--
robustbase-0.9-8/robustbase/inst/doc/psi_functions.pdf |binary
robustbase-0.9-8/robustbase/inst/doc/simulation.functions.R | 9
robustbase-0.9-8/robustbase/inst/xtraR/ex-funs.R | 19
robustbase-0.9-8/robustbase/inst/xtraR/lmrob-trace_lev.R |only
robustbase-0.9-8/robustbase/inst/xtraR/m-s_fns.R | 48
robustbase-0.9-8/robustbase/inst/xtraR/plot-psiFun.R | 81 +
robustbase-0.9-8/robustbase/inst/xtraR/subsample-fns.R | 301 ++--
robustbase-0.9-8/robustbase/man/BYlogreg.Rd |only
robustbase-0.9-8/robustbase/man/M.psi.Rd |only
robustbase-0.9-8/robustbase/man/Qn.Rd | 11
robustbase-0.9-8/robustbase/man/chgDefaults-methods.Rd | 3
robustbase-0.9-8/robustbase/man/covMcd.Rd | 56
robustbase-0.9-8/robustbase/man/education.Rd | 2
robustbase-0.9-8/robustbase/man/epilepsy.Rd | 9
robustbase-0.9-8/robustbase/man/foodstamp.Rd |only
robustbase-0.9-8/robustbase/man/glmrob.Rd | 55
robustbase-0.9-8/robustbase/man/glmrob.control.Rd |only
robustbase-0.9-8/robustbase/man/lmrob..M..fit.Rd | 9
robustbase-0.9-8/robustbase/man/lmrob.M.S.Rd | 11
robustbase-0.9-8/robustbase/man/lmrob.Rd | 57
robustbase-0.9-8/robustbase/man/lmrob.control.Rd | 7
robustbase-0.9-8/robustbase/man/los.Rd | 14
robustbase-0.9-8/robustbase/man/ltsReg.Rd | 11
robustbase-0.9-8/robustbase/man/pkg-internal.Rd | 5
robustbase-0.9-8/robustbase/man/plot-methods.Rd | 18
robustbase-0.9-8/robustbase/man/possumDiv.Rd | 23
robustbase-0.9-8/robustbase/man/psi_func-class.Rd | 10
robustbase-0.9-8/robustbase/man/rrcov.control.Rd | 38
robustbase-0.9-8/robustbase/man/summarizeRobWeights.Rd | 11
robustbase-0.9-8/robustbase/man/tukeyPsi1.Rd | 37
robustbase-0.9-8/robustbase/man/vaso.Rd | 2
robustbase-0.9-8/robustbase/man/weights.lmrob.Rd | 32
robustbase-0.9-8/robustbase/src/init.c | 34
robustbase-0.9-8/robustbase/src/lmrob.c | 735 ++++++++----
robustbase-0.9-8/robustbase/src/mc.c | 5
robustbase-0.9-8/robustbase/src/qn_sn.c | 1
robustbase-0.9-8/robustbase/src/rffastmcd.f | 9
robustbase-0.9-8/robustbase/src/robustbase.h | 31
robustbase-0.9-8/robustbase/src/wgt_himed.c | 1
robustbase-0.9-8/robustbase/tests/MCD-specials.Rout.save | 22
robustbase-0.9-8/robustbase/tests/MT-tst.R |only
robustbase-0.9-8/robustbase/tests/NAcoef.Rout.save | 48
robustbase-0.9-8/robustbase/tests/binom-ni-small.R | 1
robustbase-0.9-8/robustbase/tests/binom-ni-small.Rout.save | 27
robustbase-0.9-8/robustbase/tests/glmrob-1.R | 107 +
robustbase-0.9-8/robustbase/tests/lmrob-data.R | 4
robustbase-0.9-8/robustbase/tests/lmrob-data.Rout.save | 303 ++--
robustbase-0.9-8/robustbase/tests/lmrob-methods.Rout.save | 325 ++---
robustbase-0.9-8/robustbase/tests/lmrob-psifns.R | 76 -
robustbase-0.9-8/robustbase/tests/lmrob-psifns.Rout.save | 695 ++++++-----
robustbase-0.9-8/robustbase/tests/m-s-estimator.R | 42
robustbase-0.9-8/robustbase/tests/m-s-estimator.Rout.save | 318 +++--
robustbase-0.9-8/robustbase/tests/nlrob-tst.R | 6
robustbase-0.9-8/robustbase/tests/poisson-ex.R | 125 +-
robustbase-0.9-8/robustbase/tests/psi-rho-etc.R | 29
robustbase-0.9-8/robustbase/tests/psi-rho-etc.Rout.save | 36
robustbase-0.9-8/robustbase/tests/tlts.Rout.save | 36
robustbase-0.9-8/robustbase/tests/weights.R | 3
robustbase-0.9-8/robustbase/tests/weights.Rout.save | 60
102 files changed, 3698 insertions(+), 2383 deletions(-)
Title: Various plotting functions
Diff between plotrix versions 3.4-7 dated 2013-04-13 and 3.4-8 dated 2013-06-15
Description: Lots of plots, various labeling, axis and color scaling
functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry
Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi,
Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl
Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa
Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos, Robby
Engelmann, Michael Hecker, Felix Steinbeck, Hans Borchers,
Henrik Singmann,Ted Toal
Maintainer: Jim Lemon
DESCRIPTION | 8 -
INDEX | 1
MD5 | 53 +++++-----
NEWS | 14 ++
R/addtable2plot.R | 3
R/barp.R | 2
R/box.heresy.R | 2
R/floatpie.R | 12 +-
R/gap.barplot.R | 4
R/gap.plot.R | 37 ++++---
R/kiteChart.R | 6 -
R/plot_bg.R |only
R/pyramid.plot.R | 4
R/radial.plot.R | 4
R/twoord.plot.R | 66 ++++++++-----
data/soils.rda |binary
man/add.ps.Rd | 66 +++++++------
man/addtable2plot.Rd | 5 -
man/barp.Rd | 10 +-
man/do.first.Rd |only
man/draw.ellipse.Rd | 21 ++--
man/floating.pie.Rd | 10 +-
man/gap.plot.Rd | 12 +-
man/kiteChart.Rd | 11 +-
man/plot_bg.Rd |only
man/pyramid.plot.Rd | 5 -
man/radial.plot.Rd | 7 -
man/raw.means.plot.Rd | 248 +++++++++++++++++++++++++++++++++++---------------
man/twoord.plot.Rd | 54 ++++++----
29 files changed, 423 insertions(+), 242 deletions(-)
Title: Exploratory analysis with the singular value decomposition.
Diff between ExPosition versions 1.1 dated 2012-07-12 and 2.1.3 dated 2013-06-15
Description: ExPosition is for descriptive (i.e., fixed-effects)
multivariate analysis with the singular value decomposition.
Author: Derek Beaton, Cherise R. Chin Fatt, Herve Abdi
Maintainer: Derek Beaton
ExPosition-1.1/ExPosition/R/ExPosition-internal.R |only
ExPosition-1.1/ExPosition/R/epGraphHandler.R |only
ExPosition-2.1.3/ExPosition/DESCRIPTION | 11
ExPosition-2.1.3/ExPosition/MD5 | 109 +++++--
ExPosition-2.1.3/ExPosition/NAMESPACE | 2
ExPosition-2.1.3/ExPosition/R/PDQ.R | 4
ExPosition-2.1.3/ExPosition/R/acknowledgements.R |only
ExPosition-2.1.3/ExPosition/R/basePDQ.R | 26 -
ExPosition-2.1.3/ExPosition/R/caSupplementalElementsPreProcessing.R |only
ExPosition-2.1.3/ExPosition/R/calculateConstraints.R | 8
ExPosition-2.1.3/ExPosition/R/chi2Dist.R |only
ExPosition-2.1.3/ExPosition/R/computeConstraints.R | 18 -
ExPosition-2.1.3/ExPosition/R/computeMW.R | 59 ++--
ExPosition-2.1.3/ExPosition/R/coreCA.R | 16 -
ExPosition-2.1.3/ExPosition/R/coreMDS.R |only
ExPosition-2.1.3/ExPosition/R/corePCA.R | 50 +--
ExPosition-2.1.3/ExPosition/R/designCheck.R | 6
ExPosition-2.1.3/ExPosition/R/epCA.R | 8
ExPosition-2.1.3/ExPosition/R/epGPCA.R | 18 -
ExPosition-2.1.3/ExPosition/R/epGraphs.R | 139 ++++++----
ExPosition-2.1.3/ExPosition/R/epMCA.R | 12
ExPosition-2.1.3/ExPosition/R/epMDS.R | 33 --
ExPosition-2.1.3/ExPosition/R/epOutputHandler.R | 7
ExPosition-2.1.3/ExPosition/R/epPCA.R | 21 -
ExPosition-2.1.3/ExPosition/R/expo.scale.R |only
ExPosition-2.1.3/ExPosition/R/genPDQ.R | 4
ExPosition-2.1.3/ExPosition/R/makeDistancesAndWeights.R |only
ExPosition-2.1.3/ExPosition/R/mca.eigen.fix.R | 8
ExPosition-2.1.3/ExPosition/R/mdsSupplementalElementsPreProcessing.R |only
ExPosition-2.1.3/ExPosition/R/mdsTransform.R |only
ExPosition-2.1.3/ExPosition/R/nominalCheck.R |only
ExPosition-2.1.3/ExPosition/R/pcaSupplementaryColsPreProcessing.R |only
ExPosition-2.1.3/ExPosition/R/pcaSupplementaryRowsPreProcessing.R |only
ExPosition-2.1.3/ExPosition/R/pickSVD.R | 85 ++++--
ExPosition-2.1.3/ExPosition/R/print.epCA.R | 3
ExPosition-2.1.3/ExPosition/R/print.epGraphs.R | 12
ExPosition-2.1.3/ExPosition/R/print.epMCA.R | 3
ExPosition-2.1.3/ExPosition/R/print.epMDS.R | 3
ExPosition-2.1.3/ExPosition/R/print.epSVD.R | 3
ExPosition-2.1.3/ExPosition/R/rvCoeff.R |only
ExPosition-2.1.3/ExPosition/R/supplementalProjection.R |only
ExPosition-2.1.3/ExPosition/R/supplementaryCols.R |only
ExPosition-2.1.3/ExPosition/R/supplementaryRows.R |only
ExPosition-2.1.3/ExPosition/data/beer.tasting.notes.rda |binary
ExPosition-2.1.3/ExPosition/data/coffee.data.rda |only
ExPosition-2.1.3/ExPosition/man/ExPosition-package.Rd | 6
ExPosition-2.1.3/ExPosition/man/acknowledgements.Rd |only
ExPosition-2.1.3/ExPosition/man/caSupplementalElementsPreProcessing.Rd |only
ExPosition-2.1.3/ExPosition/man/chi2Dist.Rd |only
ExPosition-2.1.3/ExPosition/man/coffee.data.Rd |only
ExPosition-2.1.3/ExPosition/man/coreCA.Rd | 5
ExPosition-2.1.3/ExPosition/man/coreMDS.Rd |only
ExPosition-2.1.3/ExPosition/man/corePCA.Rd | 9
ExPosition-2.1.3/ExPosition/man/designCheck.Rd | 8
ExPosition-2.1.3/ExPosition/man/epCA.Rd | 3
ExPosition-2.1.3/ExPosition/man/epGPCA.Rd | 9
ExPosition-2.1.3/ExPosition/man/epGraphs.Rd | 28 +-
ExPosition-2.1.3/ExPosition/man/epMCA.Rd | 6
ExPosition-2.1.3/ExPosition/man/epMDS.Rd | 27 +
ExPosition-2.1.3/ExPosition/man/epPCA.Rd | 7
ExPosition-2.1.3/ExPosition/man/expo.scale.Rd |only
ExPosition-2.1.3/ExPosition/man/makeDistancesAndWeights.Rd |only
ExPosition-2.1.3/ExPosition/man/mca.eigen.fix.Rd | 13
ExPosition-2.1.3/ExPosition/man/mdsSupplementalElementsPreProcessing.Rd |only
ExPosition-2.1.3/ExPosition/man/mdsTransform.Rd |only
ExPosition-2.1.3/ExPosition/man/nominalCheck.Rd |only
ExPosition-2.1.3/ExPosition/man/pcaSupplementaryColsPreProcessing.Rd |only
ExPosition-2.1.3/ExPosition/man/pcaSupplementaryRowsPreProcessing.Rd |only
ExPosition-2.1.3/ExPosition/man/pickSVD.Rd |only
ExPosition-2.1.3/ExPosition/man/rvCoeff.Rd |only
ExPosition-2.1.3/ExPosition/man/supplementalProjection.Rd |only
ExPosition-2.1.3/ExPosition/man/supplementaryCols.Rd |only
ExPosition-2.1.3/ExPosition/man/supplementaryRows.Rd |only
73 files changed, 442 insertions(+), 347 deletions(-)
Title: Read and Write SAS XPORT Files
Diff between SASxport versions 1.3.4 dated 2013-06-01 and 1.3.5 dated 2013-06-15
Description: This package provides functions for reading, listing the
contents of, and writing SAS xport format files. The functions
support reading and writing of either individual data frames or
sets of data frames. Further, a mechanism has been provided
for customizing how variables of different data types are
stored.
Author: Unless otherwise noted, the contents of this package were
written by Gregory R. Warnes
Maintainer: Gregory R. Warnes
ChangeLog | 25 ++++++
DESCRIPTION | 8 +-
MD5 | 50 +++++++------
NEWS | 8 ++
R/fstr.R | 6 +
R/lookup.xport.R | 1
R/read.xport.R | 122 ++++++++++++++++------------------
R/write.xport.R | 33 +++++----
inst/ChangeLog | 25 ++++++
inst/NEWS | 8 ++
src/SASxport.c | 5 +
src/writeSAS.c | 2
tests/Alfalfa_Test.Rout.save | 4 -
tests/Theoph.Rout.save | 4 -
tests/cars.Rout.save | 4 -
tests/testDates.Rout.save | 4 -
tests/testDuplicateNames.Rout.save | 4 -
tests/testEmpty.R |only
tests/testEmpty.Rout.save |only
tests/testManyNames.Rout.save | 4 -
tests/testNegative.Rout.save | 4 -
tests/testNumeric.Rout.save | 4 -
tests/testUnnamedComponents.Rout.save | 4 -
tests/test_as_is.Rout.save | 4 -
tests/test_fields.Rout.save | 4 -
tests/xport.Rout.save | 4 -
tests/xxx.Rout.save | 4 -
27 files changed, 211 insertions(+), 134 deletions(-)
Title: raster: Geographic data analysis and modeling
Diff between raster versions 2.1-25 dated 2013-04-12 and 2.1-37 dated 2013-06-15
Description: Reading, writing, manipulating, analyzing and modeling of
gridded spatial data. The package implements basic and
high-level functions and processing of very large files is
supported.
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
raster-2.1-25/raster/man/shp.Rd |only
raster-2.1-37/raster/ChangeLog | 11
raster-2.1-37/raster/DESCRIPTION | 13
raster-2.1-37/raster/MD5 | 184 +++---
raster-2.1-37/raster/NAMESPACE | 2
raster-2.1-37/raster/R/AAAClasses.R | 34 -
raster-2.1-37/raster/R/aggregate.R | 10
raster-2.1-37/raster/R/artith.R | 20
raster-2.1-37/raster/R/brick.R | 3
raster-2.1-37/raster/R/calc.R | 2
raster-2.1-37/raster/R/canProcessInMemory.R | 4
raster-2.1-37/raster/R/cellValues.R | 2
raster-2.1-37/raster/R/compare.R | 55 +-
raster-2.1-37/raster/R/compareCRS.R | 13
raster-2.1-37/raster/R/connection.R | 109 +++-
raster-2.1-37/raster/R/crop.R | 2
raster-2.1-37/raster/R/crosstab.R | 39 -
raster-2.1-37/raster/R/cut.R | 2
raster-2.1-37/raster/R/depracated.R | 13
raster-2.1-37/raster/R/dim.R | 4
raster-2.1-37/raster/R/disaggregate.R | 2
raster-2.1-37/raster/R/extend.R | 10
raster-2.1-37/raster/R/extent.R | 76 ++
raster-2.1-37/raster/R/extractPolygons.R | 8
raster-2.1-37/raster/R/factor.R | 4
raster-2.1-37/raster/R/filler.R |only
raster-2.1-37/raster/R/focal.R | 18
raster-2.1-37/raster/R/focalWeight.R |only
raster-2.1-37/raster/R/getValuesBlock.R | 2
raster-2.1-37/raster/R/hdr.R | 13
raster-2.1-37/raster/R/hist.R | 8
raster-2.1-37/raster/R/imageplot2.R | 8
raster-2.1-37/raster/R/indexReplace.R | 140 +++--
raster-2.1-37/raster/R/indexReplaceBrick.R | 52 +
raster-2.1-37/raster/R/init.R | 2
raster-2.1-37/raster/R/kml.R | 7
raster-2.1-37/raster/R/layerize.R | 70 +-
raster-2.1-37/raster/R/math.R | 15
raster-2.1-37/raster/R/mean.R | 23
raster-2.1-37/raster/R/minValue.R | 103 ++-
raster-2.1-37/raster/R/netCDFread.R | 38 +
raster-2.1-37/raster/R/netCDFtoRasterCD.R | 35 -
raster-2.1-37/raster/R/notused.R | 4
raster-2.1-37/raster/R/raster.R | 9
raster-2.1-37/raster/R/rasterOptions.R | 4
raster-2.1-37/raster/R/rasterizePolygons.R | 21
raster-2.1-37/raster/R/ratify.R | 2
raster-2.1-37/raster/R/readAscii.R | 18
raster-2.1-37/raster/R/readCells.R | 14
raster-2.1-37/raster/R/readRasterBrick.R | 9
raster-2.1-37/raster/R/readRasterLayer.R | 42 -
raster-2.1-37/raster/R/rotate.R | 2
raster-2.1-37/raster/R/sampleRandom.R | 79 +-
raster-2.1-37/raster/R/show.R | 7
raster-2.1-37/raster/R/stretch.R | 7
raster-2.1-37/raster/R/subs.R | 2
raster-2.1-37/raster/R/subset.R | 2
raster-2.1-37/raster/R/summary-methods.R | 3
raster-2.1-37/raster/R/trim.R | 18
raster-2.1-37/raster/R/which.max.R |only
raster-2.1-37/raster/R/writeRaster.R | 2
raster-2.1-37/raster/R/zonal.R | 83 ++-
raster-2.1-37/raster/inst/doc/Raster.R | 732 +++++++++++++--------------
raster-2.1-37/raster/inst/doc/Raster.pdf |binary
raster-2.1-37/raster/inst/doc/functions.R | 686 ++++++++++++-------------
raster-2.1-37/raster/inst/doc/functions.Rnw | 54 +
raster-2.1-37/raster/inst/doc/functions.pdf |binary
raster-2.1-37/raster/inst/doc/rasterfile.R | 6
raster-2.1-37/raster/inst/doc/rasterfile.pdf |binary
raster-2.1-37/raster/man/area.Rd | 8
raster-2.1-37/raster/man/as.data.frame.Rd | 6
raster-2.1-37/raster/man/compare.Rd | 13
raster-2.1-37/raster/man/crosstab.Rd | 20
raster-2.1-37/raster/man/extend.Rd | 8
raster-2.1-37/raster/man/extent.Rd | 10
raster-2.1-37/raster/man/extract.Rd | 3
raster-2.1-37/raster/man/flip.Rd | 2
raster-2.1-37/raster/man/focal.Rd | 26
raster-2.1-37/raster/man/focalWeight.Rd |only
raster-2.1-37/raster/man/merge.Rd | 7
raster-2.1-37/raster/man/plotRGB.Rd | 6
raster-2.1-37/raster/man/predict.Rd | 38 +
raster-2.1-37/raster/man/programming.Rd | 18
raster-2.1-37/raster/man/projectRaster.Rd | 3
raster-2.1-37/raster/man/raster-package.Rd | 5
raster-2.1-37/raster/man/raster.Rd | 1
raster-2.1-37/raster/man/rasterize.Rd | 7
raster-2.1-37/raster/man/replacement.Rd | 9
raster-2.1-37/raster/man/shapefile.Rd |only
raster-2.1-37/raster/man/strech.Rd |only
raster-2.1-37/raster/man/subset.Rd | 20
raster-2.1-37/raster/man/trim.Rd | 35 -
raster-2.1-37/raster/man/which.Rd | 2
raster-2.1-37/raster/man/which.minmax.Rd |only
raster-2.1-37/raster/man/zonal.Rd | 8
raster-2.1-37/raster/src/edge.c | 73 +-
raster-2.1-37/raster/src/terrain.c | 2
97 files changed, 1928 insertions(+), 1364 deletions(-)