Title: Modeling and Inferring Gene Networks
Diff between GeneNet versions 1.2.6 dated 2013-03-08 and 1.2.7 dated 2013-06-16
Description: GeneNet is a package for analyzing gene expression (time
series) data with focus on the inference of gene networks. In
particular, GeneNet implements the methods of Schaefer and
Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007)
for learning large-scale gene association networks (including
assignment of putative directions).
Author: Juliane Schaefer, Rainer Opgen-Rhein, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
GeneNet-1.2.6/GeneNet/R/ggm.make.graph.R |only
GeneNet-1.2.6/GeneNet/man/ggm.make.graph.Rd |only
GeneNet-1.2.7/GeneNet/DESCRIPTION | 14 ++---
GeneNet-1.2.7/GeneNet/MD5 | 22 ++++-----
GeneNet-1.2.7/GeneNet/NAMESPACE | 4 -
GeneNet-1.2.7/GeneNet/NEWS | 10 ++++
GeneNet-1.2.7/GeneNet/R/ggm.make.igraph.R |only
GeneNet-1.2.7/GeneNet/R/ggm.simulate.data.R | 16 +++---
GeneNet-1.2.7/GeneNet/data/ecoli.rda |binary
GeneNet-1.2.7/GeneNet/inst/doc/arabidopsis-net.R | 36 +++++++--------
GeneNet-1.2.7/GeneNet/inst/doc/ecoli-net.R | 54 ++++++++++-------------
GeneNet-1.2.7/GeneNet/inst/doc/tcell-net.R | 52 +++++++++-------------
GeneNet-1.2.7/GeneNet/man/GeneNet-internal.Rd | 3 -
GeneNet-1.2.7/GeneNet/man/ggm.make.igraph.Rd |only
14 files changed, 103 insertions(+), 108 deletions(-)
Title: Distribution function of quadratic forms in normal variables
Diff between CompQuadForm versions 1.4 dated 2012-08-10 and 1.4.1 dated 2013-06-16
Description: Computes the distribution function of quadratic forms in
normal variables using Imhof's method, Davies's algorithm,
Farebrother's algorithm or Liu et al.'s algorithm.
Author: P. Lafaye de Micheaux
Maintainer: P. Lafaye de Micheaux
DESCRIPTION | 9 +++++----
MD5 | 12 ++++++------
R/zzz.R | 4 ++--
inst/HISTORY | 13 +++++++++++++
man/davies.Rd | 3 ++-
man/farebrother.Rd | 3 ++-
man/imhof.Rd | 7 ++++---
7 files changed, 34 insertions(+), 17 deletions(-)
Title: Statistical methods for visual fields
Diff between visualFields versions 0.3-2 dated 2013-06-08 and 0.3-3 dated 2013-06-16
Description: A collection of tools for analyzing the field of vision.
It provides a framework for development and use of innovative
methods for visualization, statistical analysis, and clinical
interpretation of visual-field loss and its change over time.
It is intended to be a tool for collaborative research.
Author: The visualFields Development Team
Maintainer: Ivan Marin-Franch
DESCRIPTION | 6 +++---
MD5 | 24 ++++++++++++------------
R/agecalc.R | 9 ++++++---
R/loadvfxml.R | 4 ++--
R/vflayout.R | 26 +++++++++-----------------
R/vflayout_legoplot.R | 31 +++++++++++--------------------
R/vflayout_poplr.R | 32 ++++++++++++--------------------
doc/news.txt | 5 ++++-
man/agecalc.Rd | 3 ++-
man/loadvfxml.Rd | 3 ++-
man/vflayout.Rd | 23 ++++++++++++++++++++---
man/vflayout_legoplot.Rd | 30 +++++++++++++++++++++++++++++-
man/vflayout_poplr.Rd | 41 +++++++++++++++++++++++++++++++++++------
13 files changed, 147 insertions(+), 90 deletions(-)
Title: Quantile Regression Using Asymmetric Laplace Distribution
Diff between ALDqr versions 0.1 dated 2013-06-08 and 0.2 dated 2013-06-16
Description: EM algorithm for estimation of parameters and other
methods in a quantile regression.
Author: Luis Benites Sanchez
Maintainer: Luis Benites Sanchez
DESCRIPTION | 10 +-
MD5 | 6 -
R/EM.qr.r | 292 +++++++++++++++++++++++++++++------------------------------
man/EM.qr.Rd | 10 +-
4 files changed, 161 insertions(+), 157 deletions(-)