Title: Generating and fitting truncated (gamlss.family) distributions
Description: This is an add on package to GAMLSS. The purpose of this
package is to allow users to defined truncated distributions in
GAMLSS models. The main function gen.trun() generates truncated
version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
Diff between gamlss.tr versions 4.1-0 dated 2012-02-21 and 4.2-6 dated 2013-06-21
gamlss.tr-4.1-0/gamlss.tr/R/gen.trun.R |only
gamlss.tr-4.1-0/gamlss.tr/R/trun.R |only
gamlss.tr-4.1-0/gamlss.tr/R/trun.d.R |only
gamlss.tr-4.1-0/gamlss.tr/R/trun.p.R |only
gamlss.tr-4.1-0/gamlss.tr/R/trun.q.R |only
gamlss.tr-4.1-0/gamlss.tr/R/trun.r.R |only
gamlss.tr-4.2-6/gamlss.tr/DESCRIPTION | 9
gamlss.tr-4.2-6/gamlss.tr/MD5 | 28 +-
gamlss.tr-4.2-6/gamlss.tr/R/gen.trun-21-06-13.R |only
gamlss.tr-4.2-6/gamlss.tr/R/trun-21-06-13.R |only
gamlss.tr-4.2-6/gamlss.tr/R/trun.d-27-12-12.R |only
gamlss.tr-4.2-6/gamlss.tr/R/trun.p-27-12-12.R |only
gamlss.tr-4.2-6/gamlss.tr/R/trun.q-27-12-12.R |only
gamlss.tr-4.2-6/gamlss.tr/R/trun.r-28-12-12.R |only
gamlss.tr-4.2-6/gamlss.tr/man/gamlss.tr.package.Rd | 19 -
gamlss.tr-4.2-6/gamlss.tr/man/gen.trun.Rd | 118 ++++----
gamlss.tr-4.2-6/gamlss.tr/man/trun.Rd | 9
gamlss.tr-4.2-6/gamlss.tr/man/trun.d.Rd | 291 ++++++++++++---------
gamlss.tr-4.2-6/gamlss.tr/man/trun.p.Rd | 279 ++++++++++++--------
gamlss.tr-4.2-6/gamlss.tr/man/trun.q.Rd | 116 +++++---
gamlss.tr-4.2-6/gamlss.tr/man/trun.r.Rd | 192 ++++++++-----
21 files changed, 624 insertions(+), 437 deletions(-)
Title: Fitting an interval response variable using gamlss.family
distributions
Description: This is an add on package to GAMLSS. The purpose of this
package is to allow users to fit interval response variables in
GAMLSS models. The main function gen.cens() generates a
censored version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
Diff between gamlss.cens versions 4.1.0 dated 2012-02-21 and 4.2.6 dated 2013-06-21
DESCRIPTION | 9
MD5 | 20 +-
R/cens.R | 532 ++++++++++++++++++++++++++++----------------------------
R/cens.d.R | 86 ++++-----
R/cens.p.R | 96 +++++-----
R/gen.cens.R | 98 +++++-----
data/lip.rda |binary
man/cens.Rd | 261 ++++++++++++++-------------
man/cens.d.Rd | 90 ++++-----
man/cens.p.Rd | 86 ++++-----
man/gen.cens.Rd | 103 +++++-----
11 files changed, 703 insertions(+), 678 deletions(-)
Title: Download, manipulate, and present data from the US Census
American Community Survey
Description: Provides a general toolkit for downloading, managing,
analyzing, and presenting data from the U.S. Census American
Community Survey (ACS). Confidence intervals provided with the
data are converted to standard errors to be bundled with
estimates in complex acs objects. Package provides new methods
to conduct standard operations and tests of significance on acs
objects in statistically appropriate ways. Current version is
1.0 +/- .05.
Author: Ezra Haber Glenn
Maintainer: Ezra Haber Glenn
Diff between acs versions 0.8 dated 2012-03-18 and 1.0 dated 2013-06-21
DESCRIPTION | 31
MD5 | 58 +
NAMESPACE | 17
R-bkp |only
R/acs.R | 1305 +++++++++++++++++++++++++++++++++------
data/cpi.rda |binary
data/fips.county.rda |only
data/fips.county.subdivision.rda |only
data/fips.place.rda |only
data/fips.state.rda |only
data/kansas07.rda |binary
data/kansas09.rda |binary
data/lawrence10.rda |binary
inst |only
man/acs-class.Rd | 23
man/acs-package.Rd | 22
man/acs.fetch.Rd |only
man/acs.lookup-class.Rd |only
man/acs.lookup.Rd |only
man/api.key.install.Rd |only
man/currency.convert.Rd | 4
man/currency.year.Rd | 4
man/divide.acs.Rd |only
man/endyear.Rd | 5
man/fips.state.Rd |only
man/flatten.geo.set.Rd |only
man/geo.lookup.Rd |only
man/geo.make.Rd |only
man/geo.set-class.Rd |only
man/geography.Rd | 15
man/kansas07.Rd | 6
man/kansas09.Rd | 4
man/lawrence10.Rd | 2
man/plot-methods.Rd | 28
man/prompt.acs.Rd | 4
man/read.acs.Rd | 68 +-
man/sum-methods.Rd | 45 +
37 files changed, 1362 insertions(+), 279 deletions(-)
Title: GEE Solver for Correlated Nominal or Ordinal Multinomial
Responses
Description: GEE solver for correlated nominal or ordinal multinomial
responses using a local odds ratios parameterization.
Author: Anestis Touloumis
Maintainer: Anestis Touloumis
Diff between multgee versions 1.2 dated 2013-05-30 and 1.3 dated 2013-06-21
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 3 +++
R/nomLORgee.R | 2 +-
R/ordLORgee.R | 2 +-
5 files changed, 13 insertions(+), 10 deletions(-)
Title: Meta-Analysis Package for R
Description: The metafor package provides a comprehensive collection of
functions for conducting meta-analyses in R. The package
includes functions to calculate various effect size or outcome
measures, fit fixed-, random-, and mixed-effects models to such
data, carry out moderator and meta-regression analyses, and
create various types of meta-analytical plots (e.g., forest,
funnel, radial, and L'Abbe plots). For meta-analyses of 2x2
tables, proportions, incidence rates, and incidence rate
ratios, the package also provides functions that implement
specialized methods, including the Mantel-Haenszel method,
Peto's method, and a variety of suitable generalized linear
(mixed-effects) models (i.e., mixed-effects (conditional)
logistic and Poisson regression models).
Author: Wolfgang Viechtbauer
Maintainer: Wolfgang Viechtbauer
Diff between metafor versions 1.8-0 dated 2013-04-11 and 1.9-0 dated 2013-06-21
metafor-1.8-0/metafor/inst/doc/viechtbauer2010.pdf |only
metafor-1.8-0/metafor/vignettes/viechtbauer2010.Rnw |only
metafor-1.9-0/metafor/DESCRIPTION | 12
metafor-1.9-0/metafor/MD5 | 74 -
metafor-1.9-0/metafor/NAMESPACE | 1
metafor-1.9-0/metafor/NEWS | 103 +-
metafor-1.9-0/metafor/R/metafor.R | 978 +++++++++++++------
metafor-1.9-0/metafor/data/dat.bangertdrowns2004.rda |only
metafor-1.9-0/metafor/data/dat.bcg.rda |binary
metafor-1.9-0/metafor/data/dat.bonett2010.rda |binary
metafor-1.9-0/metafor/data/dat.colditz1994.rda |binary
metafor-1.9-0/metafor/data/dat.collins1985a.rda |binary
metafor-1.9-0/metafor/data/dat.collins1985b.rda |binary
metafor-1.9-0/metafor/data/dat.curtis1998.rda |binary
metafor-1.9-0/metafor/data/dat.hackshaw1998.rda |binary
metafor-1.9-0/metafor/data/dat.hart1999.rda |binary
metafor-1.9-0/metafor/data/dat.hine1989.rda |binary
metafor-1.9-0/metafor/data/dat.lee2004.rda |only
metafor-1.9-0/metafor/data/dat.mcdaniel1994.rda |binary
metafor-1.9-0/metafor/data/dat.nielweise2007.rda |binary
metafor-1.9-0/metafor/data/dat.nielweise2008.rda |binary
metafor-1.9-0/metafor/data/dat.normand1999.rda |binary
metafor-1.9-0/metafor/data/dat.pritz1997.rda |binary
metafor-1.9-0/metafor/data/dat.raudenbush1985.rda |binary
metafor-1.9-0/metafor/data/dat.yusuf1985.rda |binary
metafor-1.9-0/metafor/inst/doc/metafor.pdf |only
metafor-1.9-0/metafor/inst/doc/metafor_diagram.pdf |only
metafor-1.9-0/metafor/man/anova.rma.uni.Rd | 32
metafor-1.9-0/metafor/man/confint.rma.uni.Rd | 2
metafor-1.9-0/metafor/man/dat.bangertdrowns2004.Rd |only
metafor-1.9-0/metafor/man/dat.lee2004.Rd |only
metafor-1.9-0/metafor/man/escalc.Rd | 2
metafor-1.9-0/metafor/man/fsn.Rd | 13
metafor-1.9-0/metafor/man/hc.Rd |only
metafor-1.9-0/metafor/man/metafor-package.Rd | 8
metafor-1.9-0/metafor/man/print.anova.rma.uni.Rd | 2
metafor-1.9-0/metafor/man/print.hc.rma.uni.Rd |only
metafor-1.9-0/metafor/man/print.rma.uni.Rd | 15
metafor-1.9-0/metafor/man/qqnorm.rma.uni.Rd | 2
metafor-1.9-0/metafor/man/rma.glmm.Rd | 32
metafor-1.9-0/metafor/man/rma.uni.Rd | 13
metafor-1.9-0/metafor/man/trimfill.rma.uni.Rd | 15
metafor-1.9-0/metafor/vignettes/metafor.Rnw |only
metafor-1.9-0/metafor/vignettes/metafor_diagram.Rnw |only
44 files changed, 913 insertions(+), 391 deletions(-)
Title: Generalised Additive Models for Location Scale and Shape.
Description: The library for fitting GAMLSS models.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
Diff between gamlss versions 4.2-5 dated 2013-05-26 and 4.2-6 dated 2013-06-21
gamlss-4.2-5/gamlss/R/LR-test.R |only
gamlss-4.2-5/gamlss/R/SUMMARY-26-03-13.R |only
gamlss-4.2-5/gamlss/R/confint-gamlss-02-05-13.R |only
gamlss-4.2-5/gamlss/R/gen-Likelihood-22-03-13.R |only
gamlss-4.2-5/gamlss/R/lms-23-5-13.r |only
gamlss-4.2-5/gamlss/R/lms.r |only
gamlss-4.2-5/gamlss/R/vcoc-gamlss-22-03-13.R |only
gamlss-4.2-6/gamlss/DESCRIPTION | 8 -
gamlss-4.2-6/gamlss/MD5 | 34 +++--
gamlss-4.2-6/gamlss/NAMESPACE | 152 ++++++++++++------------
gamlss-4.2-6/gamlss/R/LR-test-12-06-2013.R |only
gamlss-4.2-6/gamlss/R/SUMMARY-15-06-13.R |only
gamlss-4.2-6/gamlss/R/confint-gamlss-17-06-13.R |only
gamlss-4.2-6/gamlss/R/extra.R | 3
gamlss-4.2-6/gamlss/R/fitDist17-05-13.R |only
gamlss-4.2-6/gamlss/R/gen-Likelihood-12-06-13.R |only
gamlss-4.2-6/gamlss/R/get-K-rvcov-16-06-2913.R |only
gamlss-4.2-6/gamlss/R/getSmo-18-6-13.R |only
gamlss-4.2-6/gamlss/R/lms-20-6-13.r |only
gamlss-4.2-6/gamlss/R/vcoc-gamlss-16-06-13.R |only
gamlss-4.2-6/gamlss/inst/doc/NEWS.txt | 18 ++
gamlss-4.2-6/gamlss/man/LR.test.Rd | 100 +++++++--------
gamlss-4.2-6/gamlss/man/getSmo.Rd |only
gamlss-4.2-6/gamlss/man/lms.Rd | 36 +++--
gamlss-4.2-6/gamlss/man/lpred.Rd | 122 +++++++++----------
gamlss-4.2-6/gamlss/man/rvcov.Rd |only
gamlss-4.2-6/gamlss/man/summary.gamlss.Rd | 104 ++++++++--------
27 files changed, 307 insertions(+), 270 deletions(-)
Title: String distance functions for R
Diff between stringdist versions 0.4-2 dated 2013-02-11 and 0.5.0 dated 2013-06-21
Description: Implements the following string distance functions: Q-gram
distance, Hamming distance, (weighted) Levenshtein, (weighted)
restricted Damerau-Levenshtein (a.k.a. optimal string
alignment), (weighted) Damerau-Levenshtein distance, longest
common substring distance.
Author: Mark van der Loo
Maintainer: Mark van der Loo
stringdist-0.4-2/stringdist/x.R |only
stringdist-0.5.0/stringdist/DESCRIPTION | 19 +
stringdist-0.5.0/stringdist/MD5 | 30 +--
stringdist-0.5.0/stringdist/NAMESPACE | 1
stringdist-0.5.0/stringdist/NEWS | 11 +
stringdist-0.5.0/stringdist/R/stringdist.R | 112 ++++++++---
stringdist-0.5.0/stringdist/R/utils.R |only
stringdist-0.5.0/stringdist/inst/tests/testQgrams.R |only
stringdist-0.5.0/stringdist/inst/tests/testStringdist.R | 77 +++++++
stringdist-0.5.0/stringdist/man/qgrams.Rd |only
stringdist-0.5.0/stringdist/man/stringdist.Rd | 158 ++++++++++++----
stringdist-0.5.0/stringdist/src/dl.c | 33 ++-
stringdist-0.5.0/stringdist/src/hamming.c | 69 +++---
stringdist-0.5.0/stringdist/src/lcs.c |only
stringdist-0.5.0/stringdist/src/lv.c | 41 ++--
stringdist-0.5.0/stringdist/src/osa.c | 37 ++-
stringdist-0.5.0/stringdist/src/qgram.c |only
stringdist-0.5.0/stringdist/src/qgram2.c |only
stringdist-0.5.0/stringdist/src/utils.c | 1
stringdist-0.5.0/stringdist/tmp |only
20 files changed, 436 insertions(+), 153 deletions(-)
Title: Seismic Time Series Analysis Tools
Diff between RSEIS versions 3.0-9 dated 2012-07-30 and 3.2-1 dated 2013-06-21
Description: Multiple interactive codes to view and analyze seismic
data, via spectrum analysis, wavelet transforms, particle
motion, hodograms. Includes general time-series tools,
plotting, filtering, interactive display.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 11 -
MD5 | 439 ++++++++++++++++++++++-----------------------
NEWS | 15 +
R/CHOP.SEISN.R | 1
R/FmakeDB.R |only
R/GETARAIC.R | 29 ++
R/JGET.seis.R | 19 +
R/JSAC.seis.R | 22 +-
R/JSEGY.seis.R | 62 +++++-
R/Mine.seis.R | 7
R/PICK.DOC.R | 139 ++++++--------
R/ReadInstr.R |only
R/YPIX.R | 2
R/buttonFUNCS.R | 6
R/getseis24.R | 8
R/hilbert.R | 4
R/makeDB.R | 24 +-
R/pickFUNCS.R | 23 +-
R/plotDB.R | 2
R/repairWPX.R | 21 ++
R/setupDB.R | 6
R/swig.R | 2
R/view.seis.R | 4
R/wigFUNCS.R | 64 ++++++
R/wlet.drive.R | 24 +-
R/write1sac.R | 9
R/xtract.trace.R | 10 +
inst/doc/hodo.R |only
inst/doc/hodo.pdf |binary
inst/doc/rseis.R |only
inst/doc/rseis.pdf |binary
man/ASCII.SEISN.Rd | 2
man/BUTREPLOT.Rd | 8
man/CE1.Rd | 2
man/CHOP.SEISN.Rd | 4
man/Comp1Dvel.Rd | 32 +--
man/Comp1Dvels.Rd | 32 +--
man/DAYSperYEAR.Rd | 2
man/DISPLACE.SEISN.Rd | 30 +--
man/DOsgram.Rd | 27 +-
man/EPOCHday.Rd | 4
man/EPOCHyear.Rd | 8
man/ETECTG.Rd | 5
man/FILT.SEISN.Rd | 16 -
man/FILT.spread.Rd | 17 +
man/FRWDft.Rd | 6
man/GAZI.Rd | 19 +
man/GETARAIC.Rd | 20 +-
man/GH.Rd | 14 -
man/GreatDist.Rd | 10 -
man/INSTFREQS.Rd | 6
man/INSTresponse.Rd | 4
man/INVRft.Rd | 6
man/JBLACK.Rd | 2
man/JGET.seis.Rd | 31 +--
man/JGRAY.Rd | 2
man/JSAC.seis.Rd | 32 +--
man/KH.Rd | 18 +
man/LocalUnwrap.Rd | 13 -
man/MTM.drive.Rd | 25 +-
man/MTMdisp.Rd | 6
man/MTMgabor.Rd | 22 +-
man/MTMplot.Rd | 4
man/Mine.seis.Rd | 8
man/Mmorlet.Rd | 2
man/NEWPLOT.WPX.Rd | 4
man/OH.Rd | 23 +-
man/P2GH.Rd | 4
man/PICK.DOC.Rd | 4
man/PLOT.ALLPX.Rd | 6
man/PLOT.MATN.Rd | 20 +-
man/PLOT.SEISN.Rd | 34 +--
man/PLOT.TTCURVE.Rd | 9
man/PLTpicks.Rd | 4
man/PMOT.drive.Rd | 8
man/PSTLTcurve.Rd | 20 +-
man/PreSet.Instr.Rd | 2
man/RSEIS-package.Rd | 4
man/Ray.time1D.Rd | 9
man/ReadInstr.Rd |only
man/ReadSet.Instr.Rd | 4
man/SELBUT.Rd | 5
man/SNET.drive.Rd | 4
man/SPECT.drive.Rd | 22 +-
man/STLTcurve.Rd | 6
man/TOCART.Rd | 4
man/VELMOD1D.Rd | 2
man/VELOCITY.SEISN.Rd | 31 +--
man/XTR.Rd | 14 -
man/YPIX.Rd | 8
man/YRsecdif.Rd | 8
man/ZOOM.SEISN.Rd | 6
man/Zdate.Rd | 8
man/addWPX.Rd | 6
man/addtix.Rd | 4
man/applytaper.Rd | 4
man/attime12.Rd | 11 -
man/autoreg.Rd | 4
man/brune.doom.Rd | 4
man/brune.search.Rd | 19 +
man/butfilt.Rd | 7
man/catWPX.Rd | 6
man/checkWPX.Rd | 2
man/choosfilt.Rd | 6
man/cleanWPX.Rd | 2
man/cleanpickfile.Rd | 2
man/colorwig.Rd | 4
man/comp.env.Rd | 6
man/complex.hodo.Rd | 10 -
man/contwlet.Rd | 4
man/convert2Rseis.Rd | 32 +--
man/deconinst.Rd | 8
man/deleteWPX.Rd | 8
man/detail.pick.Rd | 4
man/detrend.Rd | 10 -
man/distseisnXY.Rd | 6
man/doGABOR.AR.Rd | 18 -
man/doGABOR.MTM.Rd | 9
man/editDB.Rd | 24 --
man/envelope.Rd | 4
man/evolAR.Rd | 27 +-
man/evolMTM.Rd | 24 +-
man/evolfft.Rd | 14 -
man/filedatetime.Rd | 4
man/filterstamp.Rd | 12 -
man/finteg.Rd | 4
man/fixUWstasLL.Rd | 4
man/fixcomps.Rd | 2
man/fromjul.Rd | 8
man/gaddtix.Rd | 10 -
man/genrick.Rd | 10 -
man/get.corner.Rd | 20 +-
man/get.slepians.Rd | 8
man/getIRIS.Rd | 6
man/getPDEcsv.Rd | 10 -
man/getphaselag2.Rd | 14 -
man/getseis24.Rd | 9
man/getvertsorder.Rd | 6
man/gpoly.Rd | 2
man/grotseis.Rd | 66 +++---
man/hilbert.Rd | 4
man/hilow.Rd | 6
man/hodogram.Rd | 10 -
man/hypot.Rd | 9
man/idpoints.hodo.Rd | 18 +
man/infoDB.Rd | 6
man/insertNAs.Rd | 4
man/jadjust.length.Rd | 2
man/jitter.lab.Rd | 56 ++---
man/jlegend.Rd | 6
man/jstats.Rd | 2
man/leests.Rd | 2
man/letter.it.Rd | 4
man/logspace.Rd | 4
man/longfft.Rd | 22 +-
man/makeDB.Rd | 80 +++++---
man/makefreq.Rd | 6
man/markseis24.Rd | 18 +
man/matsquiggle.Rd | 23 +-
man/mirror.matrix.Rd | 2
man/mtapspec.Rd | 5
man/next2.Rd | 4
man/parseFN2STA.Rd | 2
man/partmotnet.Rd | 8
man/peaks.Rd | 8
man/pickit.Rd | 8
man/pickseis24.Rd | 12 -
man/plocator.Rd | 4
man/plotDB.Rd | 6
man/plotJGET.Rd | 4
man/plotarrivals.Rd | 2
man/plotevol.Rd | 36 +--
man/plotseis24.Rd | 6
man/plotwlet.Rd | 7
man/plt.MTM0.Rd | 49 ++---
man/prep1wig.Rd | 56 +++--
man/prepSEIS.Rd | 52 ++---
man/pwlet2freqs.Rd | 10 -
man/rDUMPLOC.Rd | 8
man/rdistaz.Rd | 12 -
man/recdate.Rd | 8
man/repairWPX.Rd | 6
man/replaceWPX.Rd | 6
man/rsspec.taper.Rd | 4
man/ruler.Rd | 2
man/saveWPX.Rd | 4
man/scal2freqs.Rd | 14 -
man/secdif.Rd | 11 -
man/secdifL.Rd | 11 -
man/secdifv.Rd | 11 -
man/seiscols.Rd | 6
man/seisorder.Rd | 9
man/selAPX.Rd | 4
man/setWPX.Rd | 6
man/setstas.Rd | 8
man/setupDB.Rd | 8
man/setwelch.Rd | 43 ++--
man/setwpix.Rd | 28 +-
man/setypx.Rd | 2
man/showdatetime.Rd | 5
man/sigconv.Rd | 20 +-
man/sigconvGR.Rd | 24 +-
man/swig.ALLPX.Rd | 6
man/swig.Rd | 17 +
man/symshot1.Rd | 2
man/trapz.Rd | 2
man/travel.time1D.Rd | 4
man/tung.pulse.Rd | 4
man/varsquig.Rd | 8
man/varsquiggle.Rd | 14 -
man/view.seis.Rd | 61 +++---
man/wiggle.env.Rd | 2
man/winmark.Rd | 23 +-
man/winseis24.Rd | 6
man/wlet.do.Rd | 25 +-
man/write1sac.Rd | 45 ++--
man/writeUW.Commentcard.Rd | 4
man/writeUW.DOTcard.Rd | 4
man/writeUW.Fcard.Rd | 2
man/xcor2.Rd | 16 -
man/xprod.Rd | 6
man/xtract.trace.Rd | 2
src/ARAIC.c | 14 -
223 files changed, 1834 insertions(+), 1405 deletions(-)
Title: Continuous Time Autoregressive Models
Diff between cts versions 1.0-16 dated 2013-06-13 and 1.0-17 dated 2013-06-21
Description: Continuous Time Autoregressive Models and the Kalman
Filter
Author: Fortran original by G. Tunnicliffe-Wilson and Zhu Wang, R port
by Zhu Wang with contribution from John Nash, Netlib and NAG
authors
Maintainer: Zhu Wang
cts-1.0-16/cts/inst/doc/kf.bib |only
cts-1.0-16/cts/src/dgetrf.f |only
cts-1.0-16/cts/src/dgetrs.f |only
cts-1.0-17/cts/DESCRIPTION | 9 +++++----
cts-1.0-17/cts/MD5 | 12 ++++++------
cts-1.0-17/cts/NEWS | 7 ++++++-
cts-1.0-17/cts/inst/COPYRIGHTS |only
cts-1.0-17/cts/inst/doc/kf.pdf |binary
cts-1.0-17/cts/vignettes |only
9 files changed, 17 insertions(+), 11 deletions(-)
Title: Analysis of configuration frequencies (CFA)
Diff between cfa versions 0.9-2 dated 2011-05-24 and 0.9-3 dated 2013-06-21
Description: Analysis of configuration frequencies for simple and
repeated measures, more sample CFa, hierarchical CFA,
bootstrap-CFA, functional CFA, Kieser-Victor CFA and various
plots, and Lindner's test using a conventional and an
accelerated algorithm
Author: Stefan Funke
Maintainer: Stefan Funke
cfa-0.9-2/cfa/R/lcfa.R |only
cfa-0.9-2/cfa/man/lcfa.Rd |only
cfa-0.9-3/cfa/DESCRIPTION | 16 +++++++++-------
cfa-0.9-3/cfa/MD5 |only
cfa-0.9-3/cfa/NAMESPACE | 3 ++-
cfa-0.9-3/cfa/R/PXisM.R |only
cfa-0.9-3/cfa/R/PXisMclassic.R |only
cfa-0.9-3/cfa/R/cfa.r | 22 +++++++++++-----------
cfa-0.9-3/cfa/man/PXisM.Rd |only
cfa-0.9-3/cfa/man/PXisMclassic.Rd |only
cfa-0.9-3/cfa/man/fCFA.Rd | 15 ++++++++++-----
cfa-0.9-3/cfa/man/hcfa.Rd | 4 +++-
12 files changed, 35 insertions(+), 25 deletions(-)
Title: Tools for reading and handling spatial objects
Diff between maptools versions 0.8-23 dated 2013-02-10 and 0.8-24 dated 2013-06-21
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Author: Roger Bivand [cre, aut], Nicholas Lewin-Koh [aut], Edzer
Pebesma [ctb], Eric Archer [ctb], Adrian Baddeley [ctb],
Hans-Jörg Bibiko [ctb], Steven Brey [ctb], Jonathan Callahan
[ctb], German Carrillo [ctb], Stéphane Dray [ctb], David
Forrest [ctb], Michael Friendly [ctb], Patrick Giraudoux [ctb],
Duncan Golicher [ctb], Virgilio Gómez Rubio [ctb], Patrick
Hausmann [ctb], Karl Ove Hufthammer [ctb], Thomas Jagger [ctb],
Sebastian Luque [ctb], Don MacQueen [ctb], Andrew Niccolai
[ctb], Oscar Perpiñán Lamigueiro [ctb], Tom Short [ctb], Greg
Snow [ctb], Ben Stabler [ctb], Murray Stokely [ctb], Rolf
Turner [ctb]
Maintainer: Roger Bivand
maptools-0.8-23/maptools/LICENSE |only
maptools-0.8-24/maptools/ChangeLog | 41 ++++++++
maptools-0.8-24/maptools/DESCRIPTION | 51 +++++-----
maptools-0.8-24/maptools/MD5 | 59 ++++++++----
maptools-0.8-24/maptools/NAMESPACE | 2
maptools-0.8-24/maptools/R/Spatial-methods.R | 4
maptools-0.8-24/maptools/R/SpatialLines-methods.R | 1
maptools-0.8-24/maptools/R/SpatialPoints-methods.R | 1
maptools-0.8-24/maptools/R/SpatialPolys-methods.R | 2
maptools-0.8-24/maptools/R/kmlLines.R |only
maptools-0.8-24/maptools/R/kmlPolygons.R |only
maptools-0.8-24/maptools/inst/ChangeLog | 41 ++++++++
maptools-0.8-24/maptools/inst/doc |only
maptools-0.8-24/maptools/inst/shapes/co37_d90.dbf |only
maptools-0.8-24/maptools/inst/shapes/co37_d90.shp |only
maptools-0.8-24/maptools/inst/shapes/co37_d90.shx |only
maptools-0.8-24/maptools/inst/shapes/co45_d90.dbf |only
maptools-0.8-24/maptools/inst/shapes/co45_d90.shp |only
maptools-0.8-24/maptools/inst/shapes/co45_d90.shx |only
maptools-0.8-24/maptools/inst/shapes/co51_d90.dbf |only
maptools-0.8-24/maptools/inst/shapes/co51_d90.shp |only
maptools-0.8-24/maptools/inst/shapes/co51_d90.shx |only
maptools-0.8-24/maptools/inst/share/90mfips.txt |only
maptools-0.8-24/maptools/man/CCmaps.Rd | 5 -
maptools-0.8-24/maptools/man/kmlLines.Rd |only
maptools-0.8-24/maptools/man/kmlPoints.Rd | 6 -
maptools-0.8-24/maptools/man/kmlPolygons.Rd |only
maptools-0.8-24/maptools/man/map2SpatialPolygons.Rd | 4
maptools-0.8-24/maptools/man/sun-methods.Rd | 2
maptools-0.8-24/maptools/maptools-Ex.R | 74 ++++++++++++++-
maptools-0.8-24/maptools/src/Rcentroid.c | 2
maptools-0.8-24/maptools/src/Rgshhs.c | 18 +--
maptools-0.8-24/maptools/src/Rshapewrite1.c | 30 +++---
maptools-0.8-24/maptools/src/insiders.c | 2
maptools-0.8-24/maptools/src/shapefil.h | 14 +-
maptools-0.8-24/maptools/src/shpopen.c | 94 ++++++++++----------
maptools-0.8-24/maptools/src/shptree.c | 46 ++++-----
maptools-0.8-24/maptools/vignettes |only
38 files changed, 337 insertions(+), 162 deletions(-)
Title: Spatial dependence: weighting schemes, statistics and models
Diff between spdep versions 0.5-56 dated 2013-01-11 and 0.5-57 dated 2013-06-21
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tessellations, for summarizing these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord
G and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut], Micah Altman [ctb], Luc Anselin [ctb],
Renato Assunção [ctb], Olaf Berke [ctb], Andrew Bernat [ctb],
Guillaume Blanchet [ctb], Eric Blankmeyer [ctb], Marilia
Carvalho [ctb], Bjarke Christensen [ctb], Yongwan Chun [ctb],
Carsten Dormann [ctb], Stéphane Dray [ctb], Rein Halbersma
[ctb], Elias Krainski [ctb], Pierre Legendre [ctb], Nicholas
Lewin-Koh [ctb], Hongfei Li [ctb], Jielai Ma [ctb], Giovanni
Millo [ctb], Werner Mueller [ctb], Hisaji Ono [ctb], Pedro
Peres-Neto [ctb], Gianfranco Piras [ctb], Markus Reder [ctb],
Michael Tiefelsdorf [ctb], Danlin Yu [ctb]
Maintainer: Roger Bivand
spdep-0.5-56/spdep/LICENCE |only
spdep-0.5-56/spdep/inst/etc/shapes/columbusRegression.txt |only
spdep-0.5-56/spdep/inst/etc/weights/e80_queen.gal |only
spdep-0.5-57/spdep/ChangeLog | 42 +++++++++
spdep-0.5-57/spdep/DESCRIPTION | 53 ++++++++---
spdep-0.5-57/spdep/MD5 | 62 ++++++++------
spdep-0.5-57/spdep/R/error.spsarlm.R | 1
spdep-0.5-57/spdep/R/mcmcsamp.R | 2
spdep-0.5-57/spdep/inst/ChangeLog | 42 +++++++++
spdep-0.5-57/spdep/inst/doc/CO69.R |only
spdep-0.5-57/spdep/inst/doc/CO69.Rnw | 1
spdep-0.5-57/spdep/inst/doc/CO69.pdf |binary
spdep-0.5-57/spdep/inst/doc/SpatialFiltering.R |only
spdep-0.5-57/spdep/inst/doc/SpatialFiltering.Rnw |only
spdep-0.5-57/spdep/inst/doc/SpatialFiltering.pdf |only
spdep-0.5-57/spdep/inst/doc/nb.R |only
spdep-0.5-57/spdep/inst/doc/nb.Rnw |only
spdep-0.5-57/spdep/inst/doc/nb.pdf |only
spdep-0.5-57/spdep/inst/doc/sids.R |only
spdep-0.5-57/spdep/inst/doc/sids.Rnw | 1
spdep-0.5-57/spdep/inst/doc/sids.pdf |binary
spdep-0.5-57/spdep/inst/etc/shapes/NY8_utm18.dbf |only
spdep-0.5-57/spdep/inst/etc/shapes/NY8_utm18.prj |only
spdep-0.5-57/spdep/inst/etc/shapes/NY8_utm18.shp |only
spdep-0.5-57/spdep/inst/etc/shapes/NY8_utm18.shx |only
spdep-0.5-57/spdep/inst/etc/weights/NY_nb.gal |only
spdep-0.5-57/spdep/man/MCMCsamp.Rd | 1
spdep-0.5-57/spdep/man/impacts.sarlm.Rd | 9 +-
spdep-0.5-57/spdep/man/lagmess.Rd | 3
spdep-0.5-57/spdep/man/lm.morantest.exact.Rd | 4
spdep-0.5-57/spdep/man/localmoran.exact.Rd | 10 +-
spdep-0.5-57/spdep/man/spautolm.Rd | 6 -
spdep-0.5-57/spdep/man/tolerance.nb.Rd | 28 ++++--
spdep-0.5-57/spdep/man/trW.Rd | 5 -
spdep-0.5-57/spdep/spdep-Ex.R | 5 -
spdep-0.5-57/spdep/src/dnn.c | 6 -
spdep-0.5-57/spdep/src/ml_sse.c | 11 +-
spdep-0.5-57/spdep/src/polypoly.c | 4
spdep-0.5-57/spdep/src/skater.c | 2
spdep-0.5-57/spdep/src/spdep.h | 1
40 files changed, 227 insertions(+), 72 deletions(-)
Title: Outlier Detection using Quantile Regression for Censored Data
Diff between OutlierDC versions 0.2.1 dated 2013-03-18 and 0.2.5 dated 2013-06-21
Description: This provides three algorithms to detect outliers based on
censored quantile regression.
Author: Soo-Heang Eo
Maintainer: Soo-Heang Eo
OutlierDC-0.2.1/OutlierDC/COPYING |only
OutlierDC-0.2.5/OutlierDC/DESCRIPTION | 12 -
OutlierDC-0.2.5/OutlierDC/MD5 | 19 +-
OutlierDC-0.2.5/OutlierDC/NEWS | 16 ++
OutlierDC-0.2.5/OutlierDC/R/LCRQ.R | 154 +++++++++++------------
OutlierDC-0.2.5/OutlierDC/R/class.R | 8 -
OutlierDC-0.2.5/OutlierDC/R/odc.R | 42 ++++--
OutlierDC-0.2.5/OutlierDC/R/subfunctions.R | 104 ++++++++++-----
OutlierDC-0.2.5/OutlierDC/man/OutlierDC-class.Rd | 9 -
OutlierDC-0.2.5/OutlierDC/man/odc.Rd | 50 ++++---
OutlierDC-0.2.5/OutlierDC/man/update.Rd | 9 -
11 files changed, 258 insertions(+), 165 deletions(-)
Title: Nonlinear Calibration
Diff between nCal versions 0.1-1 dated 2013-05-10 and 0.2-1 dated 2013-06-21
Description: nCal is a package that performs nonlinear calibration and
curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc.
Additional documentation can be found on
http://research.fhcrc.org/youyifong/en/resources/ncal.html.
Author: Youyi Fong
Maintainer: Youyi Fong
ChangeLog | 9
DESCRIPTION | 21 -
MD5 | 56 +-
NAMESPACE | 4
R/5pl.R | 635 +++++++++-----------------------
R/5pl_parameterization_calculus.R |only
R/bcrm.R | 163 ++++++--
R/drm.fit.R | 1
R/ncal.R | 123 +++---
R/ncalGUI.R | 135 +++++-
R/read.luminex.xls.R | 19
R/youtilcopy.R | 28 +
inst/doc |only
inst/jags_script/model_gh_norm_4pl.txt |only
inst/jags_script/model_gh_t4_4pl.txt |only
inst/misc/02-14A22-IgA-Biotin-short.xls |only
inst/misc/02-14A22-IgA-Biotin-tiny.xls |only
inst/misc/02-14A22-IgA-Biotin.xls |binary
inst/unitTests |only
man/5PL.Rd | 23 -
man/bcrm.Rd | 23 -
man/get.S1.Rd | 49 ++
man/getConc.Rd |only
man/ncal.Rd | 69 +--
man/plot.bcrm.Rd | 12
man/read.luminex.xls.Rd | 20 -
tests |only
vignettes |only
28 files changed, 710 insertions(+), 680 deletions(-)
Title: Seasonal analysis and graphics, especially for climatology
Diff between seas versions 0.4-1 dated 2013-01-08 and 0.4-2 dated 2013-06-21
Description: Capable of deriving seasonal statistics, such as
"normals", and analysis of seasonal data, such as departures.
This package also has graphics capabilities for representing
seasonal data, including boxplots for seasonal parameters, and
bars for summed normals. There are many specific functions
related to climatology, including precipitation normals,
temperature normals, cumulative precipitation departures and
precipitation interarrivals. However, this package is designed
to represent any time-varying parameter with a discernible
seasonal signal, such as found in hydrology and ecology.
Author: Mike Toews
Maintainer: Mike Toews
seas-0.4-1/seas/seas_0.4-0.tar.gz |only
seas-0.4-2/seas/DESCRIPTION | 11 +++++++----
seas-0.4-2/seas/MD5 | 14 +++++++-------
seas-0.4-2/seas/R/getstnname.R | 9 +++++----
seas-0.4-2/seas/R/sysdata.rda |only
seas-0.4-2/seas/data/mscdata.rda |binary
seas-0.4-2/seas/data/mscstn.rda |binary
seas-0.4-2/seas/inst/ChangeLog | 5 +++++
seas-0.4-2/seas/man/mksub.Rd | 1 -
9 files changed, 24 insertions(+), 16 deletions(-)
Title: Power and Sample size based on two one-sided t-tests (TOST) for
(bio)equivalence studies
Diff between PowerTOST versions 1.1-05 dated 2013-06-17 and 1.1-06 dated 2013-06-21
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies. See
function known.designs() for study designs covered. Moreover
the package contains functions for power and sample size based
on 'expected' power in case of uncertain (estimated)
variability. ----- Added are functions for the power and
sample size for the ratio of two means with normally
distributed data on the original scale (based on Fieller's
confidence ('fiducial') interval). ----- Contains further
functions for power and sample size calculations based on
non-inferiority t-test. This is not a TOST procedure but
eventually useful if the question of 'non-superiority' must be
evaluated. The power and sample size calculations based on
non-inferiority test may also performed via 'expected' power in
case of uncertain (estimated) variability. ----- Contains
functions power.scABEL() and sampleN.scABEL() to calculate
power and sample size for the BE decision via scaled (widened)
BE acceptance limits based on simulations. Contains functions
power.RSABE() and sampleN.RSABE() to calculate power and sample
size for the BE decision via reference scaled ABE criterion
according to the FDA procedure based on simulations. Contains
further functions power.NTIDFDA() and sampleN.NTIDFDA() to
calculate power and sample size for the BE decision via the FDA
procedure for NTID's based on simulations.
Author: Detlew Labes
Maintainer: Detlew Labes
DESCRIPTION | 8 ++++----
MD5 | 22 +++++++++++-----------
NEWS | 5 +++++
R/power_RSABE_NTID.R | 1 +
R/samplesize_RSABE_NTID.R | 2 ++
man/PowerTOST-package.Rd | 11 ++++++-----
man/power.NTIDFDA.Rd | 18 ++++++++++++------
man/power.RSABE.Rd | 19 +++++++++++--------
man/power.scABEL.Rd | 9 +++++----
man/sampleN.NTIDFDA.Rd | 22 ++++++++++++----------
man/sampleN.RSABE.Rd | 9 ++++++---
man/sampleN.scABEL.Rd | 12 +++++++++---
12 files changed, 84 insertions(+), 54 deletions(-)
Title: Binarization of numeric data arrays
Diff between ArrayBin versions 0.1 dated 2013-02-01 and 0.2 dated 2013-06-21
Description: Fast adaptive binarization for numeric data arrays,
particularly designed for high-throughput biological datasets.
Includes options to filter out rows of the array with
insufficient magnitude or variation (based on gap statistic).
Author: Ed Curry
Maintainer: Ed Curry
DESCRIPTION | 9 +++++----
MD5 | 8 ++++----
R/binarize_array.R | 10 ++++++++--
R/clusterDisc.R | 38 +++++++++++++++++++++-----------------
man/binarize_array.Rd | 4 +++-
5 files changed, 41 insertions(+), 28 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-06 1.2
2011-04-11 1.1
2010-02-03 1.0-1
2010-02-03 1.0-2
2010-02-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-02 0.3
2010-11-30 0.2
2010-11-13 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-10-14 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-05-17 0.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-02-19 1.2.1
2011-05-10 1.2
2011-05-09 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-06-24 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-03 0.1
Title: Estimation of spatial autoregressive models with and without
heteroskedastic innovations
Diff between sphet versions 1.1-12 dated 2012-04-13 and 1.4 dated 2013-06-21
Description: Generalized Method of Moment estimation of Cliff-Ord-type
spatial autoregressive models with and without heteroskedastic
innovations
Author: Gianfranco Piras
Maintainer: Gianfranco Piras
sphet-1.1-12/sphet/data/knn10columbus.txt.xz |only
sphet-1.4/sphet/ChangeLog | 12 +++++++-
sphet-1.4/sphet/DESCRIPTION | 20 +++++++------
sphet-1.4/sphet/MD5 | 35 ++++++++++++++---------
sphet-1.4/sphet/NAMESPACE | 2 -
sphet-1.4/sphet/R/Omega.R | 29 ++++++++++++++-----
sphet-1.4/sphet/R/circular.R |only
sphet-1.4/sphet/R/gm_functions.R |only
sphet-1.4/sphet/R/gs2slshet.R | 21 +++++++++-----
sphet-1.4/sphet/R/ivreg.R |only
sphet-1.4/sphet/R/s2slshac.R | 14 ++++-----
sphet-1.4/sphet/R/spreg.R |only
sphet-1.4/sphet/R/twostagels.R | 8 +++--
sphet-1.4/sphet/R/utilities.R | 40 ++++++++++++++++-----------
sphet-1.4/sphet/data/coldis.rda |binary
sphet-1.4/sphet/data/knn10columbus.txt.gz |only
sphet-1.4/sphet/inst/doc/sphet.R |only
sphet-1.4/sphet/inst/doc/sphet.pdf |binary
sphet-1.4/sphet/man/circular.Rd |only
sphet-1.4/sphet/man/distance.Rd | 1
sphet-1.4/sphet/man/gstslshet.Rd | 8 +++--
sphet-1.4/sphet/man/spreg.Rd |only
sphet-1.4/sphet/man/stslshac.Rd | 4 +-
23 files changed, 122 insertions(+), 72 deletions(-)
Title: Easy analysis and visualization of factorial experiments.
Diff between ez versions 4.1-1 dated 2012-08-11 and 4.2-0 dated 2013-06-21
Description: This package facilitates easy analysis of factorial
experiments, including purely within-Ss designs (a.k.a.
"repeated measures"), purely between-Ss designs, and mixed
within-and-between-Ss designs. The functions in this package
aim to provide simple, intuitive and consistent specification
of data analysis and visualization. Visualization functions
also include design visualization for pre-analysis data
auditing, and correlation matrix visualization. Finally, this
package includes functions for non-parametric analysis,
including permutation tests and bootstrap resampling. The
bootstrap function obtains predictions either by cell means or
by more advanced/powerful mixed effects models, yielding
predictions and confidence intervals that may be easily
visualized at any level of the experiment's design.
Author: Michael A. Lawrence
Maintainer: Michael A. Lawrence
ez-4.1-1/ez/R/progress_time.R |only
ez-4.1-1/ez/man/progress_time.Rd |only
ez-4.2-0/ez/CHANGES | 5 +++++
ez-4.2-0/ez/DESCRIPTION | 9 +++++----
ez-4.2-0/ez/MD5 | 16 +++++++---------
ez-4.2-0/ez/NAMESPACE | 2 +-
ez-4.2-0/ez/R/ez-internal.R | 2 ++
ez-4.2-0/ez/R/ezCor.R | 4 ++--
ez-4.2-0/ez/R/ezPredict.R | 4 ++--
ez-4.2-0/ez/man/ez-package.Rd | 9 ++++-----
10 files changed, 28 insertions(+), 23 deletions(-)
Title: Constrained, covariance-matching constrained and universal point
or block kriging
Diff between constrainedKriging versions 0.2.0 dated 2013-06-17 and 0.2.1 dated 2013-06-21
More information about constrainedKriging at CRAN
Description: The constrainedKriging package provides functions for
efficient computations of nonlinear spatial predictions with
local change of support. The package supplies functions for
tow-dimensional spatial interpolation by constrained,
covariance-matching constrained and universal (external drift)
kriging for points or block of any shape for data with a
nonstationary mean function and an isotropic weakly stationary
variogram. The linear spatial interpolation methods,
constrained and covariance-matching constrained kriging,
provide approximately unbiased prediction for nonlinear target
values under change of support. The constrainedKriging package
extends the range of geostatistical tools available in R and
provides a veritable alternative to conditional simulation for
nonlinear spatial prediction problems with local change of
support.
Author: Christoph Hofer
Maintainer: Christoph Hofer
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
R/covmodlist.R | 2 +-
R/f.intersect.area.R | 12 +-----------
inst/ChangeLog.txt | 3 +++
5 files changed, 14 insertions(+), 21 deletions(-)
Permanent link