Title: Competing risks regression for Stratified and Clustered data
Diff between crrSC versions 1.0.3 dated 2012-11-06 and 1.1 dated 2013-06-22
Description: Extension of cmprsk to Stratified and Clustered data.
Goodness of fit test for Fine-Gray model.
Author: Bingqing Zhou and Aurelien Latouche
Maintainer: Aurelien Latouche
DESCRIPTION | 10 +
MD5 | 13 +-
NAMESPACE | 10 -
R/pshtest.r |only
data/bce.RData |only
man/bce.Rd |only
man/pshtest.Rd |only
src/crrc.c |only
src/crrcc.c | 157 +++++++++++++++-----------
src/crrcs.c | 337 ++++++++++++++++++++++-----------------------------------
10 files changed, 247 insertions(+), 280 deletions(-)
Title: C++ implementations of phylogenetic calculations
Diff between cladoRcpp versions 0.11 dated 2013-04-11 and 0.14 dated 2013-06-22
Description: This package implements in C++/Rcpp various
cladogenesis-related calculations that are slow in pure R.
These include the calculation of the probability of various
scenarios for the inheritance of geographic range at the
divergence events on a phylogenetic tree, and other
calculations necessary for models which are not continuous-time
markov chains (CTMC), but where change instead occurs
instantaneously at speciation events. Typically these models
must assess the probability of every possible combination of
(ancestor state, left descendent state, right descendent
state). This means that there are up to (# of states)^3
combinations to investigate, and in biogeographical models,
there can easily be hundreds of states, so calculation time
becomes an issue. C++ implementation plus clever tricks (many
combinations can be eliminated a priori) can greatly speed the
computation time over naive R implementations.
Author: Nicholas J. Matzke [aut, cre, cph]
Maintainer: Nicholas J. Matzke
cladoRcpp-0.11/cladoRcpp/inst |only
cladoRcpp-0.14/cladoRcpp/DESCRIPTION | 8
cladoRcpp-0.14/cladoRcpp/MD5 | 39 -
cladoRcpp-0.14/cladoRcpp/R/cladoRcpp-package.R | 337 ++++++---
cladoRcpp-0.14/cladoRcpp/R/cladoRcpp.R | 132 ++-
cladoRcpp-0.14/cladoRcpp/man/Rcpp_combn_zerostart.Rd | 12
cladoRcpp-0.14/cladoRcpp/man/areas_list_to_states_list_old.Rd | 54 -
cladoRcpp-0.14/cladoRcpp/man/cladoRcpp-package.Rd | 363 ++++++----
cladoRcpp-0.14/cladoRcpp/man/numstates_from_numareas.Rd | 58 -
cladoRcpp-0.14/cladoRcpp/man/rcpp_areas_list_to_states_list.Rd | 34
cladoRcpp-0.14/cladoRcpp/man/rcpp_calc_anclikes_sp.Rd | 19
cladoRcpp-0.14/cladoRcpp/man/rcpp_calc_anclikes_sp_COOprobs.Rd | 19
cladoRcpp-0.14/cladoRcpp/man/rcpp_calc_anclikes_sp_COOweights_faster.Rd | 29
cladoRcpp-0.14/cladoRcpp/man/rcpp_calc_anclikes_sp_prebyte.Rd | 19
cladoRcpp-0.14/cladoRcpp/man/rcpp_calc_anclikes_sp_rowsums.Rd | 19
cladoRcpp-0.14/cladoRcpp/man/rcpp_calc_anclikes_sp_using_COOprobs.Rd | 12
cladoRcpp-0.14/cladoRcpp/man/rcpp_calc_rowsums_for_COOweights_columnar.Rd | 16
cladoRcpp-0.14/cladoRcpp/man/rcpp_calc_splitlikes_using_COOweights_columnar.Rd | 16
cladoRcpp-0.14/cladoRcpp/man/rcpp_convolve.Rd | 8
cladoRcpp-0.14/cladoRcpp/man/rcpp_states_list_to_DEmat.Rd | 39 -
cladoRcpp-0.14/cladoRcpp/src/calc_anclikes_sp.cpp | 7
21 files changed, 648 insertions(+), 592 deletions(-)
Title: Spatial and Space-Time Point Pattern Analysis
Diff between splancs versions 2.01-32 dated 2013-01-16 and 2.01-33 dated 2013-06-22
Description: Spatial and Space-Time Point Pattern Analysis Functions
Author: Roger Bivand [cre], Barry Rowlingson [aut], Peter Diggle [aut],
Giovanni Petris [ctb], Stephen Eglen [ctb]
Maintainer: Roger Bivand
splancs-2.01-32/splancs/LICENCE |only
splancs-2.01-32/splancs/inst/LICENCE |only
splancs-2.01-33/splancs/ChangeLog | 17 +++++++++++++++++
splancs-2.01-33/splancs/DESCRIPTION | 21 +++++++++++++--------
splancs-2.01-33/splancs/MD5 | 13 ++++++-------
splancs-2.01-33/splancs/inst/ChangeLog | 17 +++++++++++++++++
splancs-2.01-33/splancs/inst/README |only
splancs-2.01-33/splancs/man/burkitt.Rd | 8 ++++++--
splancs-2.01-33/splancs/src/ptinpoly.c | 4 ++--
9 files changed, 61 insertions(+), 19 deletions(-)
Title: Interface between GRASS 6+ geographical information system and R
Diff between spgrass6 versions 0.8-1 dated 2013-05-02 and 0.8-2 dated 2013-06-22
Description: Interpreted interface between GRASS 6+ geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Author: Roger Bivand [cre, aut], Rainer Krug [ctb], Markus Neteler
[ctb]
Maintainer: Roger Bivand
ChangeLog | 9 +++++++++
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
inst/ChangeLog | 9 +++++++++
inst/doc/spgrass6_0.3.pdf |binary
man/initGRASS.Rd | 3 ++-
man/readRAST6.Rd | 7 +++++--
man/spgrass6.Rd | 3 ++-
8 files changed, 38 insertions(+), 15 deletions(-)
Title: Choose univariate class intervals
Diff between classInt versions 0.1-19 dated 2012-11-05 and 0.1-20 dated 2013-06-22
Description: A package for choosing univariate class intervals for
mapping or other graphics purposes
Author: Roger Bivand [aut, cre], Hisaji Ono [ctb], Richard Dunlap
[ctb], Matthieu Stigler [ctb]
Maintainer: Roger Bivand
ChangeLog | 31 +++++++++++++++++++++++++++++++
DESCRIPTION | 9 +++++----
MD5 | 16 ++++++++--------
R/classInt.R | 2 +-
inst/ChangeLog | 31 +++++++++++++++++++++++++++++++
man/classIntervals.Rd | 25 +++++++++++++++----------
man/findColours.Rd | 15 +++++++++------
man/findCols.Rd | 3 ++-
man/jenks.tests.Rd | 3 ++-
9 files changed, 104 insertions(+), 31 deletions(-)
Title: Interface to Geometry Engine - Open Source (GEOS)
Diff between rgeos versions 0.2-17 dated 2013-05-02 and 0.2-19 dated 2013-06-22
Description: Interface to Geometry Engine - Open Source (GEOS) using
the C API for topology operations on geometries. The GEOS
library is external to the package, and, when installing the
package from source, must be correctly installed first. Windows
and Mac Intel OS X binaries are provided on CRAN.
Author: Roger Bivand [cre, aut], Colin Rundel [aut], Edzer Pebesma
[ctb], Karl Ove Hufthammer [ctb]
Maintainer: Roger Bivand
ChangeLog | 43 ++++++
DESCRIPTION | 8 -
MD5 | 56 +++----
NAMESPACE | 2
R/labelpt.R | 217 +++++++++++++++++++++++++-----
R/rgeos_misc.R | 21 +-
R/rgeos_predicate_binary.R | 37 ++++-
R/rgeos_predicate_unary.R | 14 +
R/rgeos_topology.R | 18 ++
R/rgeos_topology_binary.R | 10 +
configure | 28 +++
configure.ac | 8 -
inst/ChangeLog | 43 ++++++
inst/SVN_VERSION | 2
man/comment-functions.Rd | 55 ++++---
man/constructor-SpatialCollections.Rd | 3
man/labelpt.Rd | 239 +++++++++++++++++++++++++---------
man/misc-gBuffer.Rd | 12 +
man/misc-gDistance.Rd | 5
man/pred-binary-gIntersects.Rd | 6
man/pred-binary-gRelate.Rd | 27 ++-
man/pred-unary-gIsValid.Rd | 23 ++-
man/topo-bin-gIntersection.Rd | 3
man/topo-bin-gUnion.Rd | 3
man/topo-unary-gCentroid.Rd | 3
man/topo-unary-gConvexHull.Rd | 3
man/topo-unary-gEnvelope.Rd | 3
man/topo-unary-gPointOnSurface.Rd | 10 -
man/topo-unary-gSimplify.Rd | 3
29 files changed, 694 insertions(+), 211 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.8-9 dated 2013-05-02 and 0.8-10 dated 2013-06-22
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.6.3) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and
Expat) are provided on CRAN.
Author: Roger Bivand [cre, aut], Tim Keitt [aut], Barry Rowlingson
[aut], Edzer Pebesma [ctb], Michael Sumner [ctb], Robert
Hijmans [ctb]
Maintainer: Roger Bivand
ChangeLog | 33 +++++++++++++++++++++++++++++++++
DESCRIPTION | 8 ++++----
MD5 | 26 +++++++++++++-------------
R/ogr_sp.R | 9 ++++++++-
R/ogr_write.R | 2 +-
configure | 2 +-
configure.ac | 2 +-
inst/ChangeLog | 33 +++++++++++++++++++++++++++++++++
inst/SVN_VERSION | 2 +-
inst/doc/OGR_shape_encoding.pdf |binary
man/readGDAL.Rd | 2 +-
man/readOGR.Rd | 2 ++
man/spTransform-methods.Rd | 2 +-
man/writeOGR.Rd | 3 ++-
14 files changed, 101 insertions(+), 25 deletions(-)
Title: Geographically weighted regression
Diff between spgwr versions 0.6-19 dated 2013-01-10 and 0.6-21 dated 2013-06-22
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://gwr.nuim.ie/
Author: Roger Bivand [cre, aut], Danlin Yu [aut], Tomoki Nakaya [ctb],
Miquel-Angel Garcia-Lopez [ctb]
Maintainer: Roger Bivand
ChangeLog | 37 +++++++++++++++++++++++++++++++++++++
DESCRIPTION | 23 +++++++++++++----------
MD5 | 43 ++++++++++++++++++++++++-------------------
R/gwe.R | 22 ++++++++++++++--------
R/gwr.R | 11 +++++++----
R/gwr.cv.R | 11 +++++++----
R/gwr1.R | 11 +++++++----
R/gwr1.cv.R | 11 +++++++----
inst/ChangeLog | 37 +++++++++++++++++++++++++++++++++++++
inst/backstore |only
inst/doc |only
man/LMZ.F3GWR.test.Rd | 2 +-
man/georgia.Rd | 2 +-
man/ggwr.Rd | 2 +-
man/ggwr.sel.Rd | 2 +-
man/gw.cov.Rd | 2 +-
man/gwr.Rd | 2 +-
man/gwr.bisquare.Rd | 2 +-
man/gwr.cv.Rd | 2 +-
man/gwr.gauss.Rd | 2 +-
man/gwr.tricube.Rd | 2 +-
src/gwe.c | 2 +-
vignettes |only
23 files changed, 164 insertions(+), 64 deletions(-)
Title: GGEBiplotGUI: Interactive GGE Biplots in R
Diff between GGEBiplotGUI versions 1.0-5 dated 2013-05-01 and 1.0-6 dated 2013-06-22
Description: A GUI with which to construct and interact with GGE
biplots.
Author: Elisa Frutos Bernal
Maintainer: Elisa Frutos Bernal
ChangeLog | 1 +
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/GGEBiplot.R | 3 ++-
4 files changed, 10 insertions(+), 8 deletions(-)
Title: Discrete Beta Kernel Graduation of mortality data
Diff between DBKGrad versions 1.01 dated 2012-09-19 and 1.2 dated 2013-06-22
Description: This package allows for nonparametric graduation of
mortality rates using fixed or adaptive discrete beta kernel
estimator.
Author: Angelo Mazza and Antonio Punzo
Maintainer: Angelo Mazza
DBKGrad-1.01/DBKGrad/data/Sicily2008M.rda |only
DBKGrad-1.01/DBKGrad/man/Sicily2008M.Rd |only
DBKGrad-1.2/DBKGrad/DESCRIPTION | 12
DBKGrad-1.2/DBKGrad/MD5 | 16
DBKGrad-1.2/DBKGrad/NAMESPACE | 10
DBKGrad-1.2/DBKGrad/R/dbkGrad.R | 735 ++++++++++++++++++++++-------
DBKGrad-1.2/DBKGrad/data/ItalyM.RData |only
DBKGrad-1.2/DBKGrad/man/DBKGrad-package.Rd | 4
DBKGrad-1.2/DBKGrad/man/ItalyM.Rd |only
DBKGrad-1.2/DBKGrad/man/dbkGrad.Rd | 174 +++---
DBKGrad-1.2/DBKGrad/man/plot.dbkGrad.Rd | 115 ++--
11 files changed, 751 insertions(+), 315 deletions(-)
Title: Entropy and Mutual Information Estimation
Description: This package implements various estimators of entropy,
such as the shrinkage estimator by Hausser and Strimmer, the
maximum likelihood and the Millow-Madow estimator, various
Bayesian estimators, and the Chao-Shen estimator. It also
offers an R interface to the NSB estimator. Furthermore, it
provides functions for estimating mutual information.
Author: Jean Hausser and Korbinian Strimmer
Maintainer: Korbinian Strimmer
Diff between entropy versions 1.1.8 dated 2013-03-25 and 1.1.9 dated 2013-06-22
DESCRIPTION | 10 +++++-----
MD5 | 18 ++++++++++--------
NAMESPACE | 1 +
NEWS | 7 +++++++
R/discretize.R |only
man/discretize.Rd |only
man/entropy.Dirichlet.Rd | 2 +-
man/entropy.Rd | 9 ++++++---
man/entropy.empirical.Rd | 2 +-
man/entropy.plugin.Rd | 2 +-
man/entropy.shrink.Rd | 8 +++++---
11 files changed, 37 insertions(+), 22 deletions(-)
Title: Compiling the NHL Real Time Scoring System Database for easy use
in R
Description: Compiling the NHL Real Time Scoring System Database for
easy use in R
Author: A.C. Thomas, Samuel L. Ventura
Maintainer: A.C. Thomas
Diff between nhlscrapr versions 1.0 dated 2013-06-17 and 1.0.2 dated 2013-06-22
DESCRIPTION | 8 +--
MD5 | 14 +++---
R/convert-html.R | 109 ++++++++++++++++++++++++-----------------------
R/integrate.R | 25 +++++-----
data/nhl20022013.RData |binary
man/nhl20022013.Rd | 10 +++-
man/nhlscrapr-package.Rd | 4 -
man/process-games.Rd | 2
8 files changed, 91 insertions(+), 81 deletions(-)