Title: GUI for obtaining raw & transformed tests scores. Saves results
in tabular format.
Diff between TestScorer versions 1.1-0 dated 2013-04-19 and 1.2 dated 2013-06-24
Description: GUI for entering tests items and obtaining raw and
transformed scores. The results are shown in the console and
can be saved to a text file for further statistical analysis.
The GUI also generates scripts for scoring tests defined by the
user.
Author: Manel Salamero
Maintainer: Manel Salamero
DESCRIPTION | 15
MD5 | 16
NEWS | 8
R/TestScorer.R | 3379 +++++++++++++++++++++++++-------------------
inst/doc/TestScorerHelp.pdf |binary
inst/some.stuff/TST_DASS.r | 115 -
inst/some.stuff/TST_MHLC.r | 79 -
inst/some.stuff/TST_RAAS.r | 163 +-
man/TestScorer-internal.Rd | 2
9 files changed, 2225 insertions(+), 1552 deletions(-)
Title: Event History Analysis
Diff between eha versions 2.2-5 dated 2013-05-13 and 2.2-6 dated 2013-06-24
Description: Event history analysis: Sampling of risk sets in Cox
regression, selections in the Lexis diagram, bootstrapping.
Parametric proportional hazards fitting with left truncation
and right censoring for common families of distributions,
piecewise constant hazards, and discrete models. AFT regression
for left truncated and right censored data. Binary and Poisson
regression for clustered data, fixed and random effects with
bootstrapping.
Author: Göran Broström
Maintainer: Göran Broström
ChangeLog | 10 ++++++++++
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++++----------
NAMESPACE | 2 +-
R/BCoxreg.R |only
R/check.dist.R | 4 ++++
R/coxreg.R | 15 ++++++++++++---
R/phreg.R | 8 ++++++++
R/plot.coxreg.R | 16 ++++++++++++----
R/plot.hazards.R |only
R/plot.hazdata.R | 21 +++++++++++++++++----
R/plot.phreg.R | 35 +++++++++++++++++++++++++++++------
eha-Ex.R |only
man/BCoxreg.Rd |only
man/plot.hazdata.Rd | 4 +++-
15 files changed, 114 insertions(+), 33 deletions(-)
Title: Generalized Eigenvalues and QZ Decomposition
Diff between QZ versions 0.1-1 dated 2013-06-04 and 0.1-2 dated 2013-06-24
Description: QZ package provides generalized eigenvalues and QZ
decomposition (generalized Schur form) for an N-by-N
non-symmetric matrix A or paired matrices (A,B) with
eigenvalues reordering mechanism. The package is mainly based
complex*16 and double precision of LAPACK library (version
3.4.2.)
Author: Wei-Chen Chen, partly adapted and using routines from LAPACK.
Maintainer: Wei-Chen Chen
QZ-0.1-1/QZ/demo/ex1_qz_geigen.r |only
QZ-0.1-1/QZ/man/22_fda_geigen.Rd |only
QZ-0.1-2/QZ/ChangeLog | 6 +++
QZ-0.1-2/QZ/DESCRIPTION | 8 ++---
QZ-0.1-2/QZ/MD5 | 28 +++++++++---------
QZ-0.1-2/QZ/R/s3_ordqz.r |only
QZ-0.1-2/QZ/R/s3_qz_geigen.r | 2 +
QZ-0.1-2/QZ/demo/00Index | 2 -
QZ-0.1-2/QZ/demo/ex1_geigen.r |only
QZ-0.1-2/QZ/demo/ex3_ordqz.r | 7 +++-
QZ-0.1-2/QZ/inst/doc/QZ-guide.pdf |binary
QZ-0.1-2/QZ/inst/doc/QZ-include/01-introduction.tex | 4 +-
QZ-0.1-2/QZ/inst/doc/QZ-include/03-implementation.tex | 6 +--
QZ-0.1-2/QZ/man/00_QZ-package.Rd | 2 -
QZ-0.1-2/QZ/man/21_qz_geigen.Rd | 7 +++-
QZ-0.1-2/QZ/man/23_qz.Rd | 4 +-
QZ-0.1-2/QZ/man/24_ordqz.Rd |only
QZ-0.1-2/QZ/man/30_fda_geigen.Rd |only
18 files changed, 47 insertions(+), 29 deletions(-)
Title: Probability Models for Ranking Data
Diff between pmr versions 1.2.0 dated 2013-05-20 and 1.2.1 dated 2013-06-24
Description: Descriptive statistics (mean rank, pairwise frequencies,
and marginal matrix), Analytic Hierarchy Process models (with
Saaty's and Koczkodaj's inconsistencies), probability models
(Luce models, distance-based models, and rank-ordered logit
models) and visualization with multidimensional preference
analysis for ranking data are provided. Current, only complete
rankings are supported by this package.
Author: Paul H. Lee and Philip L. H. Yu
Maintainer: Paul H. Lee
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
man/pmr-package.Rd | 4 ++--
3 files changed, 8 insertions(+), 8 deletions(-)
Title: Global Soil Information Facilities
Diff between GSIF versions 0.3-2 dated 2013-04-24 and 0.3-3 dated 2013-06-24
Description: Global Soil Information Facilities - tools (standards and
functions) and sample datasets for global soil mapping.
Author: Tomislav Hengl [cre, aut], Bas Kempen [aut], Gerard Heuvelink
[aut], Brendan Malone [ctb], Hannes Reuter [ctb]
Maintainer: Tomislav Hengl
DESCRIPTION | 12 +++++-----
MD5 | 55 ++++++++++++++++++++++++----------------------
NAMESPACE | 7 +++--
R/AAAA.R | 4 +++
R/FWTools.path.R | 4 +--
R/ZZZ.R | 2 -
R/fit.gstatModel.R | 8 +++---
R/fit.regModel.R | 17 +++++++++-----
R/fit.vgmModel.R | 7 ++++-
R/make.3Dgrid.R | 11 +++++----
R/predict.gstatModel.R | 43 ++++++++++++++++++++++++++---------
R/summary.R | 2 -
R/test.gstatModel.R |only
R/validate.R | 46 ++++++++++++++++++++------------------
man/GlobalSoilMap.Rd | 1
man/WPS.Rd | 1
man/fit.gstatModel.Rd | 20 +++++++++-------
man/fit.regModel.Rd | 7 ++---
man/fit.vgmModel.Rd | 1
man/gdalwarp.Rd |only
man/getID.Rd | 1
man/gstatModel.Rd | 2 +
man/make.3Dgrid.Rd | 7 ++---
man/makeGstatCmd.Rd | 3 +-
man/merge.Rd | 7 ++---
man/mpspline.Rd | 4 ++-
man/predict.gstatModel.Rd | 7 +++++
man/spfkm.Rd | 1
man/summary.Rd | 3 +-
man/test.gstatModel.Rd |only
30 files changed, 170 insertions(+), 113 deletions(-)
Title: Copula based cluster analysis
Diff between CoClust versions 0.2-7 dated 2012-08-05 and 0.2-9 dated 2013-06-24
Description: Copula based cluster analysis.
Author: Francesca Marta Lilja Di Lascio, Simone Giannerini
Maintainer: Simone Giannerini
ChangeLog.txt | 6 +
DESCRIPTION | 11 +
MD5 | 8 -
R/CoClust.R | 285 +++++++++++++++++++++++++------------------------
R/Internal_functions.R | 23 ++-
5 files changed, 183 insertions(+), 150 deletions(-)
Title: An R client for interacting with the White House's "We The
People" petition API.
Diff between wethepeople versions 0.5 dated 2013-06-04 and 0.6.1 dated 2013-06-24
Description: Implements an R client for the We The People petitions
API. The client supports loading petitions, signatures, and
users. Additionally, the package includes petition and
signature data samples. There are also several functions for
analyzing and visualizing the data. Term frequency calculations
and word clouds are supported using the tm and wordcloud
package, respectively. Petition and issue summary plots are
also implemented using the ggplot2 package. For additional
information about the We The People project, see
https://petitions.whitehouse.gov. Note that the API limits
requests to 10/second. For bulk data loading, please use the
data dump provided by the White House:
https://petitions.whitehouse.gov/developers
Author: Yoni Ben-Meshulam
Maintainer: Yoni Ben-Meshulam
DESCRIPTION | 8 +++++---
MD5 | 22 +++++++++++++++-------
NAMESPACE | 6 ++++++
NEWS | 10 ++++++++++
R/WeTheEntitiesAPIClient.r |only
R/WeThePeopleAPIClient.r | 9 ++++-----
R/melt_issues.r | 9 ++++++++-
R/plot_issue_signatures.r |only
R/plot_sentiment_analysis.r |only
R/plot_sentiment_density.r |only
R/wethepeople-package.r | 11 ++++++++++-
data/petitions.RData |binary
man/WeTheEntitiesAPIClient.Rd |only
man/plot_issue_signatures.Rd |only
man/plot_sentiment_analysis.Rd |only
man/plot_sentiment_density.Rd |only
16 files changed, 58 insertions(+), 17 deletions(-)
Title: Linear Predictive Models Based On The Liblinear C/C++ Library.
Diff between LiblineaR versions 1.80-6 dated 2013-03-26 and 1.80-7 dated 2013-06-24
Description: This R package is a wrapper around the liblinear C/C++
library for machine learning. LIBLINEAR is a linear classifier
for data with millions of instances and features. It supports
L2-regularized classifiers (such as L2-loss linear SVM, L1-loss
linear SVM, and logistic regression) as well as L1-regularized
classifiers (such as L2-loss linear SVM and logistic
regression). The main features of LiblineaR include multi-class
classification (one-vs-the rest, and Crammer & Singer method),
cross validation for model selection, probability estimates
(logistic regression only) or weights for unbalanced data. The
estimation of the models is particularly fast as compared to
other libraries. For more information on the C/C++ liblinear
library itself, refer to R.-E. Fan, K.-W. Chang, C.-J. Hsieh,
X.-R. Wang, and C.-J. Lin. LIBLINEAR: A Library for Large
Linear Classification, Journal of Machine Learning Research
9(2008), 1871-1874, available at
http://www.csie.ntu.edu.tw/~cjlin/liblinear . The two first
blocks of the package version indicates which version of
liblinear is currently supported. For example: 1.32-14 means
that the package supports the version 1.32 of liblinear.
Author: Thibault Helleputte
Maintainer: Thibault Helleputte
DESCRIPTION | 9 +++---
MD5 | 18 ++++++------
NEWS | 13 +++++++++
R/LiblineaR.R | 24 ++++++++++++----
R/predict.R | 27 ++++++++++++++----
man/LiblineaR-package.Rd | 4 +-
man/LiblineaR.Rd | 26 +++++++++++++++++-
man/predict.LiblineaR.Rd | 1
src/predictLinear.c | 30 ++++++++++++++++-----
src/trainLinear.c | 67 ++++++++++++++++++++++++++++++++---------------
10 files changed, 162 insertions(+), 57 deletions(-)
Title: eXtensible Time Series
Diff between xts versions 0.9-4 dated 2013-06-09 and 0.9-5 dated 2013-06-24
Description: Provide for uniform handling of R's different time-based
data classes by extending zoo, maximizing native format
information preservation and allowing for user level
customization and extension, while simplifying cross-class
interoperability.
Author: Jeffrey A. Ryan, Joshua M. Ulrich
Maintainer: Jeffrey A. Ryan
xts-0.9-4/xts/inst/doc/xts-faq.R |only
xts-0.9-4/xts/inst/doc/xts.R |only
xts-0.9-5/xts/DESCRIPTION | 10 +++++-----
xts-0.9-5/xts/MD5 | 14 ++++++--------
xts-0.9-5/xts/inst/doc/xts-faq.pdf |binary
xts-0.9-5/xts/inst/doc/xts.pdf |binary
xts-0.9-5/xts/inst/include/xts.h | 2 +-
xts-0.9-5/xts/inst/include/xtsAPI.h | 2 +-
xts-0.9-5/xts/src/endpoints.c | 2 +-
9 files changed, 14 insertions(+), 16 deletions(-)
Title: Seamless R and C++ Integration
Diff between Rcpp versions 0.10.3 dated 2013-03-23 and 0.10.4 dated 2013-06-24
Description: The Rcpp package provides R functions as well as a C++
library which facilitate the integration of R and C++.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ... The "Rcpp-introduction" vignette
provides a good entry point to Rcpp.
Conversion from C++ to R and back is driven by the templates Rcpp::wrap
and Rcpp::as which are highly flexible and extensible, as
documented in the "Rcpp-extending" vignette.
Rcpp also provides Rcpp modules, a framework that allows exposing C++
functions and classes to the R level. The "Rcpp-modules"
vignette details the current set of features of Rcpp-modules.
Rcpp includes a concept called Rcpp sugar that brings many R functions
into C++. Sugar takes advantage of lazy evaluation and
expression templates to achieve great performance while
exposing a syntax that is much nicer to use than the equivalent
low-level loop code. The "Rcpp-sugar" vignette gives an
overview of the feature.
Rcpp attributes provide a high-level syntax for declaring C++ functions
as callable from R and automatically generating the code
required to invoke them. Attributes are intended to facilitate
both interactive use of C++ within R sessions as well as to
support R package development. Attributes are built on top of
Rcpp modules and their implementation is based on previous work
in the inline package.
Many examples are included, and around 881 unit tests in 412 unit test
functions provide additional usage examples.
An earlier version of Rcpp, containing what we now call the 'classic
Rcpp API' was written during 2005 and 2006 by Dominick Samperi.
This code has been factored out of Rcpp into the package
RcppClassic, and it is still available for code relying on the
older interface. New development should always use this Rcpp
package instead.
Additional documentation is available via the paper by Eddelbuettel and
Francois (2011, JSS) paper and the book by Eddelbuettel (2013,
Springer); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Douglas Bates, John Chambers and JJ Allaire
Maintainer: Dirk Eddelbuettel
ChangeLog | 174 ++
DESCRIPTION | 20
MD5 | 136 +-
R/Attributes.R | 31
TODO | 11
inst/CITATION | 2
inst/NEWS.Rd | 67 +
inst/THANKS | 2
inst/doc/Makefile | 15
inst/doc/Rcpp-FAQ.R |only
inst/doc/Rcpp-FAQ.pdf |binary
inst/doc/Rcpp-FAQ/Rcpp-FAQ.Rnw | 20
inst/doc/Rcpp-attributes.R |only
inst/doc/Rcpp-attributes.pdf |binary
inst/doc/Rcpp-extending.R |only
inst/doc/Rcpp-extending.pdf |binary
inst/doc/Rcpp-introduction.R |only
inst/doc/Rcpp-introduction.Rnw | 13
inst/doc/Rcpp-introduction.pdf |binary
inst/doc/Rcpp-modules.R |only
inst/doc/Rcpp-modules.pdf |binary
inst/doc/Rcpp-package.R |only
inst/doc/Rcpp-package.pdf |binary
inst/doc/Rcpp-quickref.R |only
inst/doc/Rcpp-quickref.pdf |binary
inst/doc/Rcpp-sugar.R |only
inst/doc/Rcpp-sugar.pdf |binary
inst/doc/Rcpp-unitTests.R |only
inst/doc/Rcpp-unitTests.pdf |binary
inst/doc/Rcpp.bib | 55
inst/doc/unitTests-results/Rcpp-unitTests.html | 24
inst/doc/unitTests-results/Rcpp-unitTests.txt | 47
inst/include/Rcpp/DataFrame.h | 3
inst/include/Rcpp/Date.h | 18
inst/include/Rcpp/DottedPair.h | 6
inst/include/Rcpp/Named.h | 2
inst/include/Rcpp/api/meat/DottedPair.h | 12
inst/include/Rcpp/api/meat/Vector.h | 33
inst/include/Rcpp/config.h | 2
inst/include/Rcpp/generated/DataFrame_generated.h | 122 -
inst/include/Rcpp/grow.h | 2
inst/include/Rcpp/module/Module_generated_CppFunction.h | 660 ++++++++--
inst/include/Rcpp/module/Module_generated_CppMethod.h | 398 ++++--
inst/include/Rcpp/module/Module_generated_Pointer_CppMethod.h | 390 +++--
inst/include/Rcpp/module/class.h | 3
inst/include/Rcpp/stats/random/rf.h | 6
inst/include/Rcpp/stats/random/runif.h | 7
inst/include/Rcpp/sugar/functions/all.h | 4
inst/include/Rcpp/sugar/functions/functions.h | 6
inst/include/Rcpp/sugar/functions/is_finite.h |only
inst/include/Rcpp/sugar/functions/is_infinite.h |only
inst/include/Rcpp/sugar/functions/is_na.h | 4
inst/include/Rcpp/sugar/functions/is_nan.h |only
inst/include/Rcpp/sugar/functions/na_omit.h |only
inst/include/Rcpp/traits/is_finite.h |only
inst/include/Rcpp/traits/is_infinite.h |only
inst/include/Rcpp/traits/is_na.h | 13
inst/include/Rcpp/traits/is_nan.h |only
inst/include/Rcpp/traits/named_object.h | 16
inst/include/Rcpp/traits/traits.h | 5
inst/include/Rcpp/vector/MatrixRow.h | 3
inst/include/Rcpp/vector/string_proxy.h | 13
inst/unitTests/cpp/Reference.cpp |only
inst/unitTests/cpp/S4.cpp |only
inst/unitTests/cpp/Vector.cpp | 47
inst/unitTests/cpp/dates.cpp |only
inst/unitTests/cpp/sugar.cpp | 17
inst/unitTests/runit.Date.R | 196 --
inst/unitTests/runit.Reference.R |only
inst/unitTests/runit.S4.R | 146 --
inst/unitTests/runit.Vector.R | 43
inst/unitTests/runit.sugar.R | 27
man/pluginsAttribute.Rd | 3
man/setRcppClass.Rd | 6
src/Date.cpp | 6
src/Makevars | 6
src/Module.cpp | 4
src/api.cpp | 118 +
src/attributes.cpp | 72 -
79 files changed, 1999 insertions(+), 1037 deletions(-)
Title: Generate LaTeX tables of descriptive statistics
Diff between reporttools versions 1.0.8 dated 2012-03-23 and 1.0.9 dated 2013-06-24
Description: The functions in this package are especially helpful when
writing reports of data analysis using Sweave.
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach
reporttools-1.0.8/reporttools/inst/doc/jss.dtx |only
reporttools-1.0.8/reporttools/inst/doc/jsslogo.jpg |only
reporttools-1.0.8/reporttools/inst/doc/report.bib |only
reporttools-1.0.9/reporttools/DESCRIPTION | 9
reporttools-1.0.9/reporttools/MD5 | 46 -
reporttools-1.0.9/reporttools/NAMESPACE | 5
reporttools-1.0.9/reporttools/NEWS | 8
reporttools-1.0.9/reporttools/R/checkDateSuccession.r | 49 +
reporttools-1.0.9/reporttools/R/displayCrossTabs.r | 21
reporttools-1.0.9/reporttools/R/displayKbyC.r | 3
reporttools-1.0.9/reporttools/R/formatPval.R | 168 +++---
reporttools-1.0.9/reporttools/R/pairwise.fisher.test.r |only
reporttools-1.0.9/reporttools/R/tableContinuous.r | 386 +++++++-------
reporttools-1.0.9/reporttools/R/tableDate.r | 8
reporttools-1.0.9/reporttools/R/tableNominal.R | 13
reporttools-1.0.9/reporttools/R/transformVarNames.r | 11
reporttools-1.0.9/reporttools/R/twoGroupComparisons.r | 6
reporttools-1.0.9/reporttools/inst/doc/reporttools.R |only
reporttools-1.0.9/reporttools/inst/doc/reporttools.pdf |binary
reporttools-1.0.9/reporttools/man/checkDateSuccession.Rd | 6
reporttools-1.0.9/reporttools/man/pairwise.fisher.test.Rd |only
reporttools-1.0.9/reporttools/man/reporttools-package.Rd | 6
reporttools-1.0.9/reporttools/man/tableContinuous.Rd | 3
reporttools-1.0.9/reporttools/man/tableDate.Rd | 3
reporttools-1.0.9/reporttools/man/tableNominal.Rd | 12
reporttools-1.0.9/reporttools/vignettes |only
26 files changed, 408 insertions(+), 355 deletions(-)