Title: Tools for spatial data analysis
Diff between SpatialTools versions 0.5.1 dated 2013-05-07 and 0.5.3 dated 2013-06-26
Description: Tools for spatial data analysis. Emphasis on kriging.
Provides functions for prediction and simulation. Intended to
be relatively straightforward, fast, and flexible.
Author: Joshua French
Maintainer: Joshua French
DESCRIPTION | 11 +-
MD5 | 20 ++---
NAMESPACE | 1
NEWS | 4 +
R/bayesian.R |only
R/cov.R | 2
R/preamble.R | 2
man/spLMPredictJoint.Rd |only
src/krige.cpp | 87 ++++++++++++++++++++++
src/krige.h | 7 +
src/utils.cpp | 187 +++++++++++++++++++++++++++++++++++++-----------
src/utils.h | 10 ++
12 files changed, 272 insertions(+), 59 deletions(-)
Title: Bridging the gap between qualitative data and quantitative
analysis
Diff between qdap versions 0.2.2 dated 2013-05-18 and 0.2.3 dated 2013-06-26
Description: This package automates many of the tasks associated with
quantitative discourse analysis of transcripts containing
discourse including frequency counts of sentence types, words,
sentences, turns of talk, syllables and other assorted analysis
tasks. The package provides parsing tools for preparing
transcript data. Many functions enable the user to aggregate
data by any number of grouping variables providing analysis and
seamless integration with other R packages that undertake
higher level analysis and visualization of text. This affords
the user a more efficient and targeted analysis. qdap is
designed for transcript analysis, however, many functions are
applicable to other areas of Text Mining /Natural Language
Processing
Author: Tyler Rinker
Maintainer: Tyler Rinker
qdap-0.2.2/qdap/man/print.ngram.Rd |only
qdap-0.2.3/qdap/DESCRIPTION | 67 -
qdap-0.2.3/qdap/MD5 | 402 +++++------
qdap-0.2.3/qdap/NAMESPACE | 4
qdap-0.2.3/qdap/NEWS | 40 +
qdap-0.2.3/qdap/R/Ldist.R |only
qdap-0.2.3/qdap/R/automated_readability_index.R | 8
qdap-0.2.3/qdap/R/bag.o.words.R | 3
qdap-0.2.3/qdap/R/beg2char.R | 36
qdap-0.2.3/qdap/R/blank2NA.R | 2
qdap-0.2.3/qdap/R/bracketX.R | 6
qdap-0.2.3/qdap/R/capitalizer.R | 6
qdap-0.2.3/qdap/R/cm_code.blank.R | 9
qdap-0.2.3/qdap/R/cm_combine.dummy.R | 8
qdap-0.2.3/qdap/R/cm_df.fill.R | 4
qdap-0.2.3/qdap/R/cm_df.temp.R | 14
qdap-0.2.3/qdap/R/cm_df.transcript.R | 6
qdap-0.2.3/qdap/R/cm_df2long.R | 27
qdap-0.2.3/qdap/R/cm_distance.R | 7
qdap-0.2.3/qdap/R/cm_dummy2long.R | 3
qdap-0.2.3/qdap/R/cm_r2l.R | 2
qdap-0.2.3/qdap/R/cm_range2long.R | 6
qdap-0.2.3/qdap/R/cm_t2l.R | 2
qdap-0.2.3/qdap/R/cm_time2long.R | 8
qdap-0.2.3/qdap/R/colsplit2df.R | 2
qdap-0.2.3/qdap/R/dir_map.R | 2
qdap-0.2.3/qdap/R/dissimilarity.R | 13
qdap-0.2.3/qdap/R/diversity.R | 6
qdap-0.2.3/qdap/R/end_inc.R | 8
qdap-0.2.3/qdap/R/formality.R | 10
qdap-0.2.3/qdap/R/gantt_wrap.R | 26
qdap-0.2.3/qdap/R/imperative.R | 15
qdap-0.2.3/qdap/R/incomplete.replace.R | 5
qdap-0.2.3/qdap/R/key_merge.R | 6
qdap-0.2.3/qdap/R/kullback.leibler.R | 3
qdap-0.2.3/qdap/R/left.just.R | 9
qdap-0.2.3/qdap/R/list2df.R |only
qdap-0.2.3/qdap/R/lookup.R | 36
qdap-0.2.3/qdap/R/mcsv_r.R | 11
qdap-0.2.3/qdap/R/multigsub.R | 21
qdap-0.2.3/qdap/R/multiscale.R | 10
qdap-0.2.3/qdap/R/name2sex.R |only
qdap-0.2.3/qdap/R/new_project.R | 44 -
qdap-0.2.3/qdap/R/ngrams.R | 20
qdap-0.2.3/qdap/R/outlier.detect.R | 6
qdap-0.2.3/qdap/R/outlier.labeler.R | 6
qdap-0.2.3/qdap/R/paste2.R | 6
qdap-0.2.3/qdap/R/polarity.R | 8
qdap-0.2.3/qdap/R/pos.R | 25
qdap-0.2.3/qdap/R/prop.R | 12
qdap-0.2.3/qdap/R/qcombine.R | 6
qdap-0.2.3/qdap/R/qcv.R | 9
qdap-0.2.3/qdap/R/qdap-package.R | 68 +
qdap-0.2.3/qdap/R/qheat.R | 21
qdap-0.2.3/qdap/R/qprep.R | 10
qdap-0.2.3/qdap/R/question_type.R | 14
qdap-0.2.3/qdap/R/rank_freq_plot.R | 17
qdap-0.2.3/qdap/R/raw_pro_comb.R | 10
qdap-0.2.3/qdap/R/read.transcript.R | 20
qdap-0.2.3/qdap/R/replace_abbreviation.R | 2
qdap-0.2.3/qdap/R/replace_contraction.R | 6
qdap-0.2.3/qdap/R/replace_symbol.R | 16
qdap-0.2.3/qdap/R/scrubber.R | 10
qdap-0.2.3/qdap/R/sentSplit.R | 18
qdap-0.2.3/qdap/R/space_fill.R | 8
qdap-0.2.3/qdap/R/spaste.R | 5
qdap-0.2.3/qdap/R/speakerSplit.R | 4
qdap-0.2.3/qdap/R/stemmer.R | 8
qdap-0.2.3/qdap/R/stopwords.R | 37 -
qdap-0.2.3/qdap/R/strWrap.R | 2
qdap-0.2.3/qdap/R/strip.R | 15
qdap-0.2.3/qdap/R/syllable.sum.R | 15
qdap-0.2.3/qdap/R/synonyms.R | 13
qdap-0.2.3/qdap/R/tdm.R |only
qdap-0.2.3/qdap/R/termco.R | 30
qdap-0.2.3/qdap/R/termco.c.R | 11
qdap-0.2.3/qdap/R/tot_plot.R | 14
qdap-0.2.3/qdap/R/trans.cloud.R | 38 -
qdap-0.2.3/qdap/R/trans.venn.R | 31
qdap-0.2.3/qdap/R/wfm.R | 21
qdap-0.2.3/qdap/R/word.count.R | 58 -
qdap-0.2.3/qdap/R/word.network.plot.R | 29
qdap-0.2.3/qdap/R/word_associate.R | 31
qdap-0.2.3/qdap/R/word_diff_list.R | 22
qdap-0.2.3/qdap/R/word_list.R | 20
qdap-0.2.3/qdap/R/word_stats.R | 29
qdap-0.2.3/qdap/README.md | 4
qdap-0.2.3/qdap/data/BuckleySaltonSWL.rda |binary
qdap-0.2.3/qdap/data/DATA.rda |binary
qdap-0.2.3/qdap/data/DATA2.rda |binary
qdap-0.2.3/qdap/data/DICTIONARY.rda |binary
qdap-0.2.3/qdap/data/NAMES.rda |only
qdap-0.2.3/qdap/data/NAMES_LIST.rda |only
qdap-0.2.3/qdap/data/NAMES_SEX.rda |only
qdap-0.2.3/qdap/data/OnixTxtRetToolkitSWL1.rda |binary
qdap-0.2.3/qdap/data/SYNONYM.rda |binary
qdap-0.2.3/qdap/data/Top100Words.rda |binary
qdap-0.2.3/qdap/data/Top200Words.rda |binary
qdap-0.2.3/qdap/data/Top25Words.rda |binary
qdap-0.2.3/qdap/data/abbreviations.rda |binary
qdap-0.2.3/qdap/data/action.verbs.rda |binary
qdap-0.2.3/qdap/data/adverb.rda |binary
qdap-0.2.3/qdap/data/contractions.rda |binary
qdap-0.2.3/qdap/data/datalist | 3
qdap-0.2.3/qdap/data/emoticon.rda |binary
qdap-0.2.3/qdap/data/env.syl.rda |binary
qdap-0.2.3/qdap/data/env.syn.rda |binary
qdap-0.2.3/qdap/data/increase.amplification.words.rda |binary
qdap-0.2.3/qdap/data/interjections.rda |binary
qdap-0.2.3/qdap/data/labMT.rda |binary
qdap-0.2.3/qdap/data/mraja1.rda |binary
qdap-0.2.3/qdap/data/mraja1spl.rda |binary
qdap-0.2.3/qdap/data/negation.words.rda |binary
qdap-0.2.3/qdap/data/negative.words.rda |binary
qdap-0.2.3/qdap/data/positive.words.rda |binary
qdap-0.2.3/qdap/data/preposition.rda |binary
qdap-0.2.3/qdap/data/raj.act.1.rda |binary
qdap-0.2.3/qdap/data/raj.act.2.rda |binary
qdap-0.2.3/qdap/data/raj.act.3.rda |binary
qdap-0.2.3/qdap/data/raj.act.4.rda |binary
qdap-0.2.3/qdap/data/raj.act.5.rda |binary
qdap-0.2.3/qdap/data/raj.demographics.rda |binary
qdap-0.2.3/qdap/data/raj.rda |binary
qdap-0.2.3/qdap/data/rajPOS.rda |binary
qdap-0.2.3/qdap/data/rajSPLIT.rda |binary
qdap-0.2.3/qdap/inst/CITATION | 4
qdap-0.2.3/qdap/inst/extdata/docs/PROJECT_WORKFLOW_GUIDE.pdf |binary
qdap-0.2.3/qdap/inst/extdata/docs/extra_functions.R | 4
qdap-0.2.3/qdap/man/NAMES.Rd |only
qdap-0.2.3/qdap/man/NAMES_LIST.Rd |only
qdap-0.2.3/qdap/man/NAMES_SEX.Rd |only
qdap-0.2.3/qdap/man/Readability.Rd | 12
qdap-0.2.3/qdap/man/Word_Frequency_Matrix.Rd | 20
qdap-0.2.3/qdap/man/bag.o.words.Rd | 2
qdap-0.2.3/qdap/man/beg2char.Rd | 11
qdap-0.2.3/qdap/man/blank2NA.Rd | 2
qdap-0.2.3/qdap/man/bracketX.Rd | 8
qdap-0.2.3/qdap/man/capitalizer.Rd | 6
qdap-0.2.3/qdap/man/cm_code.blank.Rd | 11
qdap-0.2.3/qdap/man/cm_combine.dummy.Rd | 11
qdap-0.2.3/qdap/man/cm_df.fill.Rd | 4
qdap-0.2.3/qdap/man/cm_df.temp.Rd | 12
qdap-0.2.3/qdap/man/cm_df.transcript.Rd | 8
qdap-0.2.3/qdap/man/cm_df2long.Rd | 28
qdap-0.2.3/qdap/man/cm_distance.Rd | 11
qdap-0.2.3/qdap/man/cm_dummy2long.Rd | 2
qdap-0.2.3/qdap/man/cm_range2long.Rd | 8
qdap-0.2.3/qdap/man/cm_time2long.Rd | 12
qdap-0.2.3/qdap/man/colsplit2df.Rd | 4
qdap-0.2.3/qdap/man/dir_map.Rd | 4
qdap-0.2.3/qdap/man/dissimilarity.Rd | 20
qdap-0.2.3/qdap/man/diversity.Rd | 8
qdap-0.2.3/qdap/man/end_inc.Rd | 12
qdap-0.2.3/qdap/man/formality.Rd | 12
qdap-0.2.3/qdap/man/gantt_wrap.Rd | 36
qdap-0.2.3/qdap/man/imperative.Rd | 22
qdap-0.2.3/qdap/man/incomplete.replace.Rd | 8
qdap-0.2.3/qdap/man/justification.Rd | 8
qdap-0.2.3/qdap/man/key_merge.Rd | 8
qdap-0.2.3/qdap/man/kullback.leibler.Rd | 2
qdap-0.2.3/qdap/man/lookup.Rd | 32
qdap-0.2.3/qdap/man/multicsv.Rd | 16
qdap-0.2.3/qdap/man/multigsub.Rd | 20
qdap-0.2.3/qdap/man/multiscale.Rd | 12
qdap-0.2.3/qdap/man/name2sex.Rd |only
qdap-0.2.3/qdap/man/new_project.Rd | 6
qdap-0.2.3/qdap/man/ngrams.Rd | 8
qdap-0.2.3/qdap/man/outlier.detect.Rd | 8
qdap-0.2.3/qdap/man/outlier.labeler.Rd | 4
qdap-0.2.3/qdap/man/paste2.Rd | 8
qdap-0.2.3/qdap/man/plot.character.table.Rd | 23
qdap-0.2.3/qdap/man/polarity.Rd | 14
qdap-0.2.3/qdap/man/pos.Rd | 30
qdap-0.2.3/qdap/man/print.character.table.Rd | 14
qdap-0.2.3/qdap/man/print.ngrams.Rd |only
qdap-0.2.3/qdap/man/prop.Rd | 12
qdap-0.2.3/qdap/man/qcombine.Rd | 8
qdap-0.2.3/qdap/man/qcv.Rd | 16
qdap-0.2.3/qdap/man/qheat.Rd | 22
qdap-0.2.3/qdap/man/qprep.Rd | 13
qdap-0.2.3/qdap/man/question_type.Rd | 16
qdap-0.2.3/qdap/man/rank_freq_plot.Rd | 24
qdap-0.2.3/qdap/man/read.transcript.Rd | 31
qdap-0.2.3/qdap/man/replace_abbreviation.Rd | 4
qdap-0.2.3/qdap/man/replace_contraction.Rd | 6
qdap-0.2.3/qdap/man/replace_symbol.Rd | 24
qdap-0.2.3/qdap/man/scrubber.Rd | 15
qdap-0.2.3/qdap/man/sentSplit.Rd | 23
qdap-0.2.3/qdap/man/space_fill.Rd | 11
qdap-0.2.3/qdap/man/spaste.Rd | 8
qdap-0.2.3/qdap/man/speakerSplit.Rd | 4
qdap-0.2.3/qdap/man/stemmer.Rd | 12
qdap-0.2.3/qdap/man/stopwords.Rd | 53 -
qdap-0.2.3/qdap/man/strWrap.Rd | 4
qdap-0.2.3/qdap/man/strip.Rd | 12
qdap-0.2.3/qdap/man/syllabication.Rd | 8
qdap-0.2.3/qdap/man/synonyms.Rd | 12
qdap-0.2.3/qdap/man/tdm.Rd |only
qdap-0.2.3/qdap/man/termco.Rd | 44 -
qdap-0.2.3/qdap/man/termco.c.Rd | 15
qdap-0.2.3/qdap/man/tot_plot.Rd | 16
qdap-0.2.3/qdap/man/trans.cloud.Rd | 39 -
qdap-0.2.3/qdap/man/trans.venn.Rd | 27
qdap-0.2.3/qdap/man/word.count.Rd | 37 -
qdap-0.2.3/qdap/man/word.network.plot.Rd | 34
qdap-0.2.3/qdap/man/word_associate.Rd | 43 -
qdap-0.2.3/qdap/man/word_diff_list.Rd | 28
qdap-0.2.3/qdap/man/word_list.Rd | 24
qdap-0.2.3/qdap/man/word_stats.Rd | 30
209 files changed, 1560 insertions(+), 1285 deletions(-)
Title: Functions to create and manipulate discrete random variables
Diff between discreteRV versions 1.0 dated 2013-04-17 and 1.0.1 dated 2013-06-26
Description: discreteRV implements a set of functions that allow
computations involving discrete random variables. It uses a
syntax which is familiar to that which is used in mathematical
statistics and probability courses.
Author: Andreas Buja
Maintainer: Eric Hare
DESCRIPTION | 15
MD5 | 51 +--
NAMESPACE | 43 +-
R/discreteRV-Probabilities.r | 662 +++++++++++++++++++++++--------------------
R/discreteRV-Simulations.r | 170 +++++------
man/E.Rd | 40 +-
man/KURT.Rd | 34 +-
man/P.Rd | 44 +-
man/Prop.Rd | 46 +-
man/SD.Rd | 34 +-
man/SKEW.Rd | 34 +-
man/SofI.Rd | 58 +--
man/SofIID.Rd | 65 ++--
man/V.Rd | 34 +-
man/as.RV.Rd | 32 +-
man/make.RV.Rd | 74 ++--
man/margins.Rd |only
man/mult.Rd | 66 ++--
man/multN.Rd | 64 ++--
man/plot.RV.Rd | 104 +++---
man/plot.RVsim.Rd | 46 +-
man/print.RV.Rd | 43 +-
man/probs.Rd | 74 ++--
man/props.Rd | 58 +--
man/qqnorm.RV.Rd | 76 ++--
man/rsim.Rd | 54 +--
man/skewSim.Rd | 40 +-
27 files changed, 1069 insertions(+), 992 deletions(-)
Title: Firth's bias reduced logistic regression
Diff between logistf versions 1.20 dated 2013-05-16 and 1.21 dated 2013-06-26
Description: Firth's bias reduced logistic regression approach with
penalized profile likelihood based confidence intervals for
parameter estimates.
Author: Georg Heinze
Maintainer: Georg Heinze
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/logistf.control.R | 2 +-
R/logistf.fit.R | 23 ++++++++++++-----------
4 files changed, 20 insertions(+), 19 deletions(-)
Title: JudgeIt: A Program for Evaluating Electoral Systems and
Redistricting Plans
Diff between JudgeIt versions 1.5.0 dated 2013-06-19 and 1.5.1 dated 2013-06-26
Description: Examines two-party electoral systems and calculates
quantities of interest based on the behaviour of their
districts.
Author: Andrew Gelman, Gary King and Andrew C. Thomas
Maintainer: Andrew C. Thomas
DESCRIPTION | 11 ++++++-----
MD5 | 4 ++--
inst/doc/judgeit.pdf |binary
3 files changed, 8 insertions(+), 7 deletions(-)
Title: Wrapper for fftw3: includes 1-D, univariate and multivariate,
and 2-D transform
Diff between fftwtools versions 0.9-3 dated 2013-05-05 and 0.9-5 dated 2013-06-26
Description: This package is a wrapper for several fftw functions.
Please see the fftw package for additional tools. This package
provides access to the two-dimensional fft, the multivariate
fft, and the one-dimensional real to complex fft using fftw3.
The package includes the functions fftw and mvfftw which are
designed to mimic the functionality of the R functions fftw and
mvfft. The fft functions have a parameter that allows them to
not return the redundant complex conjugate when the input is
real data. Please see the package fftw for general
one-dimensional use of fftw, the discrete cosine transform, and
for more detailed use of performance enhancing plans when using
fftw. The calls to fftw and mvfftw in this package mimic the
standard routines in R.
Author: Karim Rahim
Maintainer: Karim Rahim
DESCRIPTION | 27 +++++++++++++++------------
MD5 | 10 +++++-----
inst/doc/testTimeAndSimpleUse.R | 2 ++
inst/doc/testTimeAndSimpleUse.Rnw | 2 ++
inst/doc/testTimeAndSimpleUse.pdf |binary
src/Makevars | 9 ++++++++-
6 files changed, 32 insertions(+), 18 deletions(-)
Title: Method Functions for Confidence Intervals and to Distill
Information from an Object
Diff between distillery versions 1.0 dated 2013-05-30 and 1.0-1 dated 2013-06-26
Description: Some very simple method functions for confidence interval
calculation and to distill pertinent information from a
potentially complex object; primarily used in common with
packages extRemes and SpatialVx.
Author: Eric Gilleland
Maintainer: Eric Gilleland
DESCRIPTION | 13 ++++++++-----
MD5 | 3 ++-
man/distillery-package.Rd |only
3 files changed, 10 insertions(+), 6 deletions(-)
Title: Mediation analysis with missing data using bootstrap
Diff between bmem versions 1.3 dated 2012-06-26 and 1.4 dated 2013-06-26
Description: Four methods for mediation analysis with missing data:
Listwise deletion, Pairwise deletion, Multiple imputation, and
Two Stage Maximum Likelihood algorithm. For MI and TS-ML,
auxiliary variables can be included. Bootstrap confidence
intervals for mediation effects are obtained. The robust method
is also implemented for TS-ML. Since version 1.4, bmem adds the
capability to conduct power analysis for mediation models.
Author: Zhiyong Zhang and Lijuan Wang
Maintainer: Zhiyong Zhang
DESCRIPTION | 16
MD5 | 87 -
NAMESPACE | 23
R/bmem.R | 3011 ++++++++++++++++++++++++++++++--------------------
man/bmem-package.Rd | 52
man/bmem.Rd | 84 -
man/bmem.bs.Rd | 78 -
man/bmem.ci.bc.Rd | 56
man/bmem.ci.bc1.Rd | 46
man/bmem.ci.bca.Rd | 56
man/bmem.ci.bca1.Rd | 38
man/bmem.ci.norm.Rd | 52
man/bmem.ci.p.Rd | 52
man/bmem.cov.Rd | 38
man/bmem.em.Rd | 54
man/bmem.em.boot.Rd | 74 -
man/bmem.em.cov.Rd | 36
man/bmem.em.jack.Rd | 56
man/bmem.em.rcov.Rd | 54
man/bmem.list.Rd | 40
man/bmem.list.boot.Rd | 42
man/bmem.list.cov.Rd | 34
man/bmem.list.jack.Rd | 40
man/bmem.mi.Rd | 44
man/bmem.mi.boot.Rd | 48
man/bmem.mi.cov.Rd | 36
man/bmem.mi.jack.Rd | 36
man/bmem.moments.Rd | 32
man/bmem.pair.Rd | 32
man/bmem.pair.boot.Rd | 34
man/bmem.pair.cov.Rd | 26
man/bmem.pair.jack.Rd | 32
man/bmem.pattern.Rd | 24
man/bmem.plot.Rd | 60
man/bmem.raw2cov.Rd | 54
man/bmem.sem.Rd | 46
man/bmem.sobel.Rd | 66 -
man/bmem.sobel.ind.Rd | 58
man/bmem.ssq.Rd | 32
man/bmem.v.Rd | 36
man/plot.bmem.Rd | 62 -
man/popPar.Rd |only
man/power.basic.Rd |only
man/power.boot.Rd |only
man/power.curve.Rd |only
man/summary.bmem.Rd | 44
man/summary.power.Rd |only
47 files changed, 2778 insertions(+), 2143 deletions(-)
Title: Sequential Parameter Optimization
Diff between SPOT versions 1.0.4045 dated 2013-04-11 and 1.0.4184 dated 2013-06-26
Description: R-Package for Sequential Parameter Optimization Toolbox
Author: T. Bartz-Beielstein with contributions from: J. Ziegenhirt, W.
Konen, O. Flasch, M. Friese, P. Koch, M. Zaefferer, B. Naujoks
Maintainer: Martin Zaefferer
SPOT-1.0.4045/SPOT/R/esOptim.R |only
SPOT-1.0.4184/SPOT/DESCRIPTION | 38 -
SPOT-1.0.4184/SPOT/MD5 | 111 ++-
SPOT-1.0.4184/SPOT/NAMESPACE | 8
SPOT-1.0.4184/SPOT/NEWS | 3
SPOT-1.0.4184/SPOT/R/spot.R | 8
SPOT-1.0.4184/SPOT/R/spotAlgStartEs.R | 78 +-
SPOT-1.0.4184/SPOT/R/spotAlgStartRgp.R | 3
SPOT-1.0.4184/SPOT/R/spotAlgStartSmsEmoaGlg.R |only
SPOT-1.0.4184/SPOT/R/spotCreateDesignLhsOpt.R | 4
SPOT-1.0.4184/SPOT/R/spotGaussianLandscapeGenerator.R | 297 +++++++++-
SPOT-1.0.4184/SPOT/R/spotHelpFunctions.R | 14
SPOT-1.0.4184/SPOT/R/spotOptimEs.R |only
SPOT-1.0.4184/SPOT/R/spotOptimizationFunctions.R | 3
SPOT-1.0.4184/SPOT/R/spotPredictCoForrester.R | 107 +--
SPOT-1.0.4184/SPOT/R/spotPredictDace.R | 6
SPOT-1.0.4184/SPOT/R/spotPredictEsvm.R | 19
SPOT-1.0.4184/SPOT/R/spotPredictForrester.R | 18
SPOT-1.0.4184/SPOT/R/spotPredictKsvm.R | 27
SPOT-1.0.4184/SPOT/R/spotReportMAMP.R | 91 ++-
SPOT-1.0.4184/SPOT/R/spotReportSAMP.R | 88 ++
SPOT-1.0.4184/SPOT/R/spotSurf.R | 15
SPOT-1.0.4184/SPOT/inst/demo01TreeBranin/demo01TreeBranin.conf | 24
SPOT-1.0.4184/SPOT/inst/demo02RandomForestBranin/demo02RandomForestBranin.conf | 24
SPOT-1.0.4184/SPOT/inst/demo03LmBranin/demo03LmBranin.conf | 26
SPOT-1.0.4184/SPOT/inst/demo04MlegpBranin/demo04MlegpBranin.conf | 32 -
SPOT-1.0.4184/SPOT/inst/demo05TgpBranin/demo05TgpBranin.conf | 32 -
SPOT-1.0.4184/SPOT/inst/demo06TreeSann/demo06TreeSann.conf | 26
SPOT-1.0.4184/SPOT/inst/demo07RandomForestSann/demo07RandomForestSann.conf | 28
SPOT-1.0.4184/SPOT/inst/demo08LmSann/demo08LmSann.conf | 28
SPOT-1.0.4184/SPOT/inst/demo09MlegpSann/demo09MlegpSann.conf | 32 -
SPOT-1.0.4184/SPOT/inst/demo10TgpSann/demo10TgpSann.conf | 28
SPOT-1.0.4184/SPOT/inst/demo11Java/demo11Java.conf | 50 -
SPOT-1.0.4184/SPOT/inst/demo12Sann/sann0001.conf | 36 -
SPOT-1.0.4184/SPOT/inst/demo13RandomForestMlegpSann/demo13RandomForestMlegpSann.conf | 28
SPOT-1.0.4184/SPOT/inst/demo14LmOptimSann/demo14LmOptimSann.conf | 38 -
SPOT-1.0.4184/SPOT/inst/demo16EsBranin/es1.conf | 28
SPOT-1.0.4184/SPOT/inst/demo17Rgp/rgp0001.conf | 26
SPOT-1.0.4184/SPOT/inst/demoMixedModelAnalysis/glges01.conf | 38 -
SPOT-1.0.4184/SPOT/inst/demoMixedModelAnalysis/glges02.conf | 38 -
SPOT-1.0.4184/SPOT/inst/doc/SPOT.pdf |binary
SPOT-1.0.4184/SPOT/man/SPOT-package.Rd | 2
SPOT-1.0.4184/SPOT/man/daceBuilder.Rd | 7
SPOT-1.0.4184/SPOT/man/forrBuilder.Rd | 7
SPOT-1.0.4184/SPOT/man/forrCoBuilder.Rd | 21
SPOT-1.0.4184/SPOT/man/spotAlgEsQuickTest.Rd | 9
SPOT-1.0.4184/SPOT/man/spotAlgStartSmsEmoaGlg.Rd |only
SPOT-1.0.4184/SPOT/man/spotCreateDesignLhsOpt.Rd | 2
SPOT-1.0.4184/SPOT/man/spotGlgCore.Rd |only
SPOT-1.0.4184/SPOT/man/spotGlgCreate.Rd | 5
SPOT-1.0.4184/SPOT/man/spotGlgCreateN.Rd |only
SPOT-1.0.4184/SPOT/man/spotGlgCreateRot.Rd |only
SPOT-1.0.4184/SPOT/man/spotGlgCreateRotSearched.Rd |only
SPOT-1.0.4184/SPOT/man/spotGlgEval.Rd | 3
SPOT-1.0.4184/SPOT/man/spotGlgEvalN.Rd |only
SPOT-1.0.4184/SPOT/man/spotGlgEvalRot.Rd |only
SPOT-1.0.4184/SPOT/man/spotGlgInit.Rd | 3
SPOT-1.0.4184/SPOT/man/spotGlgInitN.Rd |only
SPOT-1.0.4184/SPOT/man/spotPredictCoForrester.Rd | 5
SPOT-1.0.4184/SPOT/man/spotPredictForrester.Rd | 5
SPOT-1.0.4184/SPOT/man/spotSurfContour.Rd | 6
SPOT-1.0.4184/SPOT/vignettes/SPOT.Rnw | 13
62 files changed, 1007 insertions(+), 581 deletions(-)
Title: Structural Equation Modeling using RAM Notation
Diff between RAMpath versions 0.3.5 dated 2013-03-07 and 0.3.6 dated 2013-06-26
Description: RAMpath is a rewrite of RAMpath software developed by John
McArdle and Steven Boker. However, it does more than the
original software by providing flexible fit of growth curve
models, univariate and bivariate latent change score models. It
can also generate the vector field plot for the bivariate
latent change score models.
Author: Zhiyong Zhang, Jack McArdle, Aki Hamagami, & Kevin Grimm
Maintainer: Zhiyong Zhang
DESCRIPTION | 14 +++++++-------
MD5 | 20 ++++++++++----------
R/blcs.R | 25 +++++++++++++++++++++++++
data/ex1.txt.gz |binary
data/ex2.txt.gz |binary
data/ex3.txt.gz |binary
man/plot.RAMpath.Rd | 5 ++++-
man/ramBLCS.Rd | 5 ++++-
man/ramLCM.Rd | 4 +++-
man/ramLCS.Rd | 3 ++-
man/ramVF.Rd | 3 ++-
11 files changed, 57 insertions(+), 22 deletions(-)
Title: Package for Plotting Categorical Longitudinal and Time-Series
Data
Diff between longCatEDA versions 0.13 dated 2013-03-30 and 0.16 dated 2013-06-26
Description: Package for Plotting Categorical Longitudinal and
Time-Series Data
Author: Stephen Tueller. Funded by the National Institute on Drug Abuse
(NIDA) Award number 1R03DA030850 and the National Institute on
Alcohol Abuse and Alcoholism (NIAAA) Award Number R03 AA019775.
Maintainer: Stephen Tueller
longCatEDA-0.13/longCatEDA/R/longCatEDA_0.13.r |only
longCatEDA-0.16/longCatEDA/DESCRIPTION | 12 +++---
longCatEDA-0.16/longCatEDA/MD5 | 15 ++++---
longCatEDA-0.16/longCatEDA/NEWS |only
longCatEDA-0.16/longCatEDA/R/longCatEDA_0.16.r |only
longCatEDA-0.16/longCatEDA/man/colChoose.Rd | 36 ++++++++++++-------
longCatEDA-0.16/longCatEDA/man/longCat-class.Rd | 2 -
longCatEDA-0.16/longCatEDA/man/longCatEDA-package.Rd | 2 -
longCatEDA-0.16/longCatEDA/man/longCatPlot.Rd | 16 ++++++--
longCatEDA-0.16/longCatEDA/man/sorter.Rd | 10 ++---
10 files changed, 58 insertions(+), 35 deletions(-)
Title: Exact (Restricted) Likelihood Ratio tests for mixed and additive
models.
Diff between RLRsim versions 2.0-12 dated 2013-02-26 and 2.1-0 dated 2013-06-26
Description: Rapid, simulation-based exact (restricted) likelihood
ratio tests for testing the presence of variance
components/nonparametric terms for models fit with
nlme::lme(),lme4::lmer(), mgcv::gamm() and SemiPar:spm()
Author: Fabian Scheipl, Ben Bolker
Maintainer: Fabian Scheipl
DESCRIPTION | 10 -
MD5 | 24 +--
R/LRTSim.R | 132 ++++++++++++------
R/RLRTSim.R | 320 +++++++++++++++++++++++++++-------------------
R/exactLRT.R | 131 ++++++++++--------
R/exactRLRT.R | 167 ++++++++++++------------
R/extract.lmeDesign.R | 124 ++++++++---------
R/extract.lmerDesign.R | 102 +++++++-------
R/extract.lmerModDesign.R | 68 ++++-----
man/LRTSim.Rd | 166 ++++++++++++-----------
man/RLRsim-package.Rd | 50 +++----
man/exactLRT.Rd | 129 +++++++++---------
man/exactRLRT.Rd | 169 ++++++++++++------------
13 files changed, 866 insertions(+), 726 deletions(-)
Title: Functions for medical statistics book with some demographic data
Diff between fmsb versions 0.3.9 dated 2013-06-10 and 0.4.0 dated 2013-06-26
Description: Several utility functions for the book entitled "Practices
of Medical and Health Data Analysis using R" (Pearson Education
Japan, 2007) with Japanese demographic data and some
demographic analysis related functions.
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
DESCRIPTION | 8 +--
MD5 | 16 +++---
NEWS | 4 +
R/demogjpn.R | 124 +++++++++++++++++++++++++++++++++---------------------
man/CT.Rd | 5 ++
man/Denny.Rd | 5 ++
man/Hadwiger.Rd | 6 ++
man/Nagelkerke.Rd | 7 +++
man/lifetable.Rd | 15 +++++-
9 files changed, 127 insertions(+), 63 deletions(-)
Title: Gene Set Analysis Exploiting Pathway Topology
Diff between topologyGSA versions 1.2.0 dated 2013-03-01 and 1.2.1 dated 2013-06-26
Description: Using Gaussian graphical models we propose a novel
approach to perform pathway analysis using gene expression.
Given the structure of a graph (a pathway) we introduce two
statistical tests to compare the mean and the concentration
matrices between two groups. Specifically, these tests can be
performed on the graph and on its connected components
(cliques).
Author: Sofia Massa, Gabriele Sales
Maintainer: Gabriele Sales
DESCRIPTION | 19 +++++++++++++------
MD5 | 6 +++---
NAMESPACE | 1 +
R/cliques.R | 2 +-
4 files changed, 18 insertions(+), 10 deletions(-)
Title: R/Weka interface
Diff between RWeka versions 0.4-17 dated 2013-04-16 and 0.4-18 dated 2013-06-26
Description: An R interface to Weka (Version 3.7.9). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package RWeka contains the interface code, the
Weka jar is in a separate package RWekajars. For more
information on Weka see http://www.cs.waikato.ac.nz/~ml/weka/.
Author: Kurt Hornik [aut, cre], Christian Buchta [ctb], Torsten Hothorn
[ctb], Alexandros Karatzoglou [ctb], David Meyer [ctb], Achim
Zeileis [ctb]
Maintainer: Kurt Hornik
CHANGELOG | 5 +++++
DESCRIPTION | 6 +++---
MD5 | 14 +++++++-------
inst/doc/RWeka.R | 20 ++++++++++----------
inst/doc/RWeka.Rnw | 9 +++++++--
inst/doc/RWeka.pdf |binary
man/WPM.Rd | 9 +++++++++
vignettes/RWeka.Rnw | 9 +++++++--
8 files changed, 48 insertions(+), 24 deletions(-)
Title: Surrogate variable analysis using partial least squares in a
gene expression study.
Diff between svapls versions 1.1 dated 2013-03-13 and 1.2 dated 2013-06-26
Description: Accurate identification of genes that are truly
differentially expressed over two sample varieties, after
adjusting for hidden subject-specific effects of residual
heterogeneity.
Author: Sutirtha Chakraborty, Somnath Datta and Susmita Datta
Maintainer: Sutirtha Chakraborty
DESCRIPTION | 14 -
MD5 | 22 +-
NAMESPACE | 3
R/fitModel.R | 380 +++++++++++++++++++++++++-----------------------
R/hfp.R | 23 +-
R/svpls.R | 164 ++++++++++----------
data/hidden_fac.dat.rda |binary
man/fitModel.Rd | 4
man/hfp.Rd | 12 -
man/hidden_fac.dat.Rd | 27 +++
man/svapls-package.Rd | 12 -
man/svpls.Rd | 19 +-
12 files changed, 367 insertions(+), 313 deletions(-)
Title: Mark-Recapture Distance Sampling (mrds)
Diff between mrds versions 2.1.0 dated 2012-12-11 and 2.1.2 dated 2013-06-26
Description: This package implements mark-recapture distance sampling
methods as described in D.L. Borchers, W. Zucchini and Fewster,
R.M. (1988), "Mark-recapture models for line transect surveys",
Biometrics 54: 1207-1220. and Laake, J.L. (1999) "Distance
sampling with independent observers: Reducing bias from
heterogeneity by weakening the conditional independence
assumption." in Amstrup, G.W., Garner, S.C., Laake, J.L.,
Manly, B.F.J., McDonald, L.L. and Robertson, D.G. (eds) "Marine
mammal survey and assessment methods", Balkema, Rotterdam:
137-148 and Borchers, D.L., Laake, J.L., Southwell, C. and
Paxton, C.L.G. "Accommodating unmodelled heterogeneity in
double-observer distance sampling surveys". 2006. Biometrics
62:372-378.)
Author: Jeff Laake
Maintainer: Jeff Laake
DESCRIPTION | 11 ++-
MD5 | 117 ++++++++++++++++++++--------------------
NEWS | 27 +++++++++
R/create.ddfobj.R | 6 +-
R/ddf.R | 25 +++++---
R/ddf.gof.R | 8 +-
R/ddf.io.fi.R | 34 +++++++----
R/ddf.rem.fi.R | 20 +++++-
R/ddf.trial.fi.R | 19 +++++-
R/det.tables.R | 4 +
R/detfct.R | 23 +++++--
R/flpt.lnl.r | 11 ++-
R/histline.R | 2
R/integratelogistic.R | 4 -
R/integratelogisticdup.R | 4 -
R/integratepdf.r | 9 ++-
R/keyfct.th.R |only
R/mcds.R | 2
R/model.description.R | 4 +
R/mrds-package.R | 36 ++++++++----
R/pdot.dsr.integrate.logistic.R | 23 +++++--
R/plot.det.tables.R | 3 -
R/plot.ds.R | 3 -
R/plot.io.R | 30 +++-------
R/plot.io.fi.R | 29 +++------
R/plot.rem.R | 23 ++-----
R/plot.rem.fi.R | 24 ++------
R/plot.trial.R | 22 ++-----
R/plot.trial.fi.R | 23 ++-----
R/plot_cond.R | 9 ++-
R/plot_uncond.R | 30 ++--------
R/predict.ds.R | 2
R/predict.io.fi.R | 6 --
R/print.summary.ds.R | 2
R/summary.ds.R | 2
data/book.tee.data.rda |binary
man/ddf.Rd | 26 ++++++--
man/det.tables.Rd | 4 +
man/distpdf.Rd | 3 -
man/histline.Rd | 2
man/integratepdf.Rd | 3 -
man/plot.det.tables.Rd | 3 -
man/plot.ds.Rd | 3 -
man/plot.io.Rd | 21 ++-----
man/plot.io.fi.Rd | 20 ++----
man/plot.rem.Rd | 21 ++-----
man/plot.rem.fi.Rd | 21 ++-----
man/plot.trial.Rd | 20 ++----
man/plot.trial.fi.Rd | 21 ++-----
man/plot_cond.Rd | 10 ++-
man/plot_uncond.Rd | 10 ++-
man/predict.ds.Rd | 2
man/predict.io.fi.Rd | 2
man/ptdata.distance.Rd | 3 -
man/ptdata.dual.Rd | 3 -
man/ptdata.removal.Rd | 3 -
man/ptdata.single.Rd | 3 -
man/stake77.Rd | 12 ++--
man/stake78.Rd | 12 ++--
tests/run-all.R | 2
60 files changed, 429 insertions(+), 398 deletions(-)
Title: Get energy data from the UK Dept of Energy and Climate Change
Diff between decctools versions 0.1.0 dated 2013-06-24 and 0.1.1 dated 2013-06-26
Description: decctools provides functions for retrieving energy
statistics from the United Kingdom Department of Energy and
Climate Change and related data sources. The current version
focuses on total final energy consumption statistics at the
local authority, MSOA, and LSOA geographies. Methods for
calculating the generation mix of grid electricity and its
associated carbon intensity are also provided.
Author: James Keirstead
Maintainer: James Keirstead
DESCRIPTION | 12 ++++++------
MD5 | 8 ++++----
NEWS | 5 +++++
R/utils.r | 4 +++-
README.md | 4 +++-
5 files changed, 21 insertions(+), 12 deletions(-)