More information about tibbrConnector at CRAN
Permanent link
Title: Spatially explicit capture-recapture
Diff between secr versions 2.6.0 dated 2013-06-12 and 2.6.1 dated 2013-06-27
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive
detectors, such as traps, or by searching polygons or
transects. Models incorporating distance-dependent detection
are fitted by maximizing the likelihood. Tools are included for
data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford
DESCRIPTION | 8 +-
MD5 | 61 ++++++++--------
NAMESPACE | 10 ++
NEWS | 15 ++++
R/DENSITY.R | 12 ---
R/autoini.R | 3
R/derivedMS.R | 9 +-
R/esa.R | 4 -
R/make.capthist.R | 1
R/methods.R | 10 ++
R/regionN.R | 3
R/secr.fit.R | 10 +-
R/secrloglik.R | 10 +-
R/sim.capthist.R | 169 +++++++++++++++++++++++++++++++----------------
R/telemetry.R | 81 ++++++++++++++++++++++
R/utility.R | 23 ++++++
inst/doc/secr-manual.pdf |binary
man/DENSITY.Rd | 14 +--
man/addTelemetry.Rd | 5 -
man/make.capthist.Rd | 8 +-
man/make.traps.Rd | 6 -
man/mask.check.Rd | 6 -
man/model.average.Rd | 4 -
man/plot.capthist.Rd | 8 +-
man/read.telemetry.Rd |only
man/read.traps.Rd | 8 +-
man/secr-package.Rd | 4 -
man/secrdemo.Rd | 10 +-
man/suggest.buffer.Rd | 4 -
man/transformations.Rd | 3
man/traps.Rd | 6 -
src/secr.h | 20 +++++
32 files changed, 373 insertions(+), 162 deletions(-)
Title: MatchIt: Nonparametric Preprocessing for Parametric Casual
Inference
Diff between MatchIt versions 2.4-20 dated 2011-10-24 and 2.4-21 dated 2013-06-27
Description: MatchIt selects matched samples of the the original
treated and control groups with similar covariate distributions
-- can be used to match exactly on covariates, to match on
propensity scores, or perform a variety of other matching
procedures.
Author: Daniel Ho
Maintainer: Kosuke Imai
MatchIt-2.4-20/MatchIt/R/load.first.R |only
MatchIt-2.4-20/MatchIt/inst/doc |only
MatchIt-2.4-21/MatchIt/DESCRIPTION | 38 ++++++++-------
MatchIt-2.4-21/MatchIt/MD5 | 71 ++++++++++++-----------------
MatchIt-2.4-21/MatchIt/R/discard.R | 4 -
MatchIt-2.4-21/MatchIt/R/matchit2cem.R | 4 -
MatchIt-2.4-21/MatchIt/R/matchit2full.R | 4 -
MatchIt-2.4-21/MatchIt/R/matchit2genetic.R | 4 -
MatchIt-2.4-21/MatchIt/R/matchit2optimal.R | 4 -
MatchIt-2.4-21/MatchIt/data/lalonde.tab.gz |binary
MatchIt-2.4-21/MatchIt/vignettes |only
11 files changed, 60 insertions(+), 69 deletions(-)
Title: Multitaper spectral analysis tools
Diff between multitaper versions 1.0-5 dated 2013-05-14 and 1.0-6 dated 2013-06-27
Description: Generates Discrete Prolate Spheroidal Sequences, provides
functions and utilities for multitaper spectral analysis and
related problems.
Author: Karim Rahim
Maintainer: Karim Rahim
DESCRIPTION | 11 +++++------
MD5 | 8 ++++++--
inst |only
man/demod.dpss.Rd | 5 +++--
4 files changed, 14 insertions(+), 10 deletions(-)
More information about knitrBootstrap at CRAN
Permanent link
Title: PCIC implementation of Climdex routines
Diff between climdex.pcic versions 0.6-2 dated 2013-02-07 and 0.7-2 dated 2013-06-27
Description: The pcic_climdex package provides PCIC's implementation of
Climdex routines for computation of climate indices.
Author: David Bronaugh
Maintainer: David Bronaugh
climdex.pcic-0.6-2/climdex.pcic/comparison |only
climdex.pcic-0.7-2/climdex.pcic/CHANGELOG | 6
climdex.pcic-0.7-2/climdex.pcic/DESCRIPTION | 12
climdex.pcic-0.7-2/climdex.pcic/MD5 | 19
climdex.pcic-0.7-2/climdex.pcic/R/climdex.r | 19
climdex.pcic-0.7-2/climdex.pcic/man/climdexInput.raw.Rd | 15
climdex.pcic-0.7-2/climdex.pcic/man/growing.season.length.Rd | 7
climdex.pcic-0.7-2/climdex.pcic/man/percent.days.op.threshold.Rd | 9
climdex.pcic-0.7-2/climdex.pcic/man/threshold.exceedance.duration.index.Rd | 4
climdex.pcic-0.7-2/climdex.pcic/src/Makevars |only
climdex.pcic-0.7-2/climdex.pcic/src/Makevars.win |only
climdex.pcic-0.7-2/climdex.pcic/src/zhang_running_quantile.cc | 406 +++++++---
12 files changed, 367 insertions(+), 130 deletions(-)
Title: Conditional Density Estimation Network Construction and
Evaluation
Diff between CaDENCE versions 1.1.1 dated 2013-02-09 and 1.2.0 dated 2013-06-27
Description: A probabilistic extension of the standard multi-layer
perceptron neural network
Author: Alex J. Cannon
Maintainer: Alex J. Cannon
DESCRIPTION | 9 +
MD5 | 14 +--
R/cadence.evaluate.R | 13 +-
R/cadence.fit.R | 223 +++++++++++++++++++++++++++++--------------------
man/CaDENCE-package.Rd | 7 +
man/cadence.fit.Rd | 66 +++++++++++---
man/cadence.predict.Rd | 3
man/gam.style.Rd | 9 +
8 files changed, 220 insertions(+), 124 deletions(-)
Title: Functions for wind resource assessment
Diff between bReeze versions 0.2-1 dated 2013-02-28 and 0.2-2 dated 2013-06-27
Description: A collection of functions to analyse, visualize and
interpret wind data and to calculate the potential energy
production of wind turbines.
Author: Christian Graul and Carsten Poppinga
Maintainer: Christian Graul
bReeze-0.2-1/bReeze/inst/NEWS |only
bReeze-0.2-1/bReeze/man/bReezeNews.Rd |only
bReeze-0.2-2/bReeze/DESCRIPTION | 8
bReeze-0.2-2/bReeze/MD5 | 113 ++---
bReeze-0.2-2/bReeze/NAMESPACE | 31 +
bReeze-0.2-2/bReeze/R/availability.R | 85 +++-
bReeze-0.2-2/bReeze/R/clean.R | 3
bReeze-0.2-2/bReeze/R/formatTS.R | 2
bReeze-0.2-2/bReeze/R/frequency.R | 7
bReeze-0.2-2/bReeze/R/monthStats.R | 3
bReeze-0.2-2/bReeze/R/plotAvailability.R | 3
bReeze-0.2-2/bReeze/R/plotDay.R | 3
bReeze-0.2-2/bReeze/R/plotMonthStats.R | 3
bReeze-0.2-2/bReeze/R/plotPC.R | 211 +++++++---
bReeze-0.2-2/bReeze/R/plotPolar.R | 10
bReeze-0.2-2/bReeze/R/plotTimeSeries.R | 4
bReeze-0.2-2/bReeze/R/plotTurbIEC.R | 3
bReeze-0.2-2/bReeze/R/printObject.R | 7
bReeze-0.2-2/bReeze/R/profile.R | 6
bReeze-0.2-2/bReeze/R/turbulence.R | 6
bReeze-0.2-2/bReeze/R/weibull.R | 7
bReeze-0.2-2/bReeze/R/wrapper.R |only
bReeze-0.2-2/bReeze/R/zzz.R | 125 +++++
bReeze-0.2-2/bReeze/inst/CHANGES |only
bReeze-0.2-2/bReeze/inst/powercurves/EWT_DW90_2MW.pow |only
bReeze-0.2-2/bReeze/inst/powercurves/EWT_DW96_2MW.pow |only
bReeze-0.2-2/bReeze/inst/powercurves/Enercon_E40_500kW.pow |only
bReeze-0.2-2/bReeze/inst/powercurves/Enercon_E66_1870kW.pow |only
bReeze-0.2-2/bReeze/inst/powercurves/Enercon_E66_2000kW.pow |only
bReeze-0.2-2/bReeze/inst/powercurves/Siemens_SWT-3.6MW-120m.pow |only
bReeze-0.2-2/bReeze/inst/powercurves/Vensys_100_2.5MW.pow |only
bReeze-0.2-2/bReeze/inst/powercurves/Vensys_109_2.5MW.pow |only
bReeze-0.2-2/bReeze/inst/powercurves/Vensys_112_2.5MW.pow |only
bReeze-0.2-2/bReeze/inst/powercurves/Vensys_82_1.5MW.pow |only
bReeze-0.2-2/bReeze/man/availability.Rd | 19
bReeze-0.2-2/bReeze/man/availabilityInt.Rd | 5
bReeze-0.2-2/bReeze/man/bReeze-package.Rd | 6
bReeze-0.2-2/bReeze/man/changes.Rd |only
bReeze-0.2-2/bReeze/man/clean.Rd | 7
bReeze-0.2-2/bReeze/man/createMast.Rd | 6
bReeze-0.2-2/bReeze/man/createPC.Rd | 8
bReeze-0.2-2/bReeze/man/createSet.Rd | 3
bReeze-0.2-2/bReeze/man/energy.Rd | 9
bReeze-0.2-2/bReeze/man/formatTS.Rd | 6
bReeze-0.2-2/bReeze/man/frequency.Rd | 8
bReeze-0.2-2/bReeze/man/monthStats.Rd | 9
bReeze-0.2-2/bReeze/man/plotAep.Rd | 6
bReeze-0.2-2/bReeze/man/plotAvailability.Rd | 10
bReeze-0.2-2/bReeze/man/plotDay.Rd | 9
bReeze-0.2-2/bReeze/man/plotEnergy.Rd | 6
bReeze-0.2-2/bReeze/man/plotFrequency.Rd | 6
bReeze-0.2-2/bReeze/man/plotMonthStats.Rd | 9
bReeze-0.2-2/bReeze/man/plotPC.Rd | 21
bReeze-0.2-2/bReeze/man/plotPolar.Rd | 11
bReeze-0.2-2/bReeze/man/plotProfile.Rd | 6
bReeze-0.2-2/bReeze/man/plotTimeSeries.Rd | 6
bReeze-0.2-2/bReeze/man/plotTurbIEC.Rd | 9
bReeze-0.2-2/bReeze/man/plotTurbulence.Rd | 6
bReeze-0.2-2/bReeze/man/plotWbDir.Rd | 6
bReeze-0.2-2/bReeze/man/plotWeibull.Rd | 6
bReeze-0.2-2/bReeze/man/printObject.Rd | 6
bReeze-0.2-2/bReeze/man/profile.Rd | 15
bReeze-0.2-2/bReeze/man/readPC.Rd | 41 +
bReeze-0.2-2/bReeze/man/turbulence.Rd | 10
bReeze-0.2-2/bReeze/man/weibull.Rd | 14
65 files changed, 719 insertions(+), 210 deletions(-)
Title: parallel implementation of the "segment" function of package
"DNAcopy"
Diff between ParDNAcopy versions 1.1 dated 2013-06-23 and 1.3 dated 2013-06-27
Description: parallelized version of the "segment" function from
Bioconductor package "DNAcopy", utilizing multi-core
computation on host CPU
Author: Alex krasnitz, Guoli Sun
Maintainer: Guoli Sun
DESCRIPTION | 6 +++---
MD5 | 4 ++--
man/parSegment.Rd | 2 --
3 files changed, 5 insertions(+), 7 deletions(-)
Title: cold: a package for Count Longitudinal Data
Diff between cold versions 1.0 dated 2013-06-20 and 1.0-1 dated 2013-06-27
Description: cold performs regression analysis for longitudinal count
data using a self-decomposable probability distribution, a
random intercept term is also allowed. Estimation is via
maximization of the exact likelihood of a suitably defined
model.
Author: M. Helena Gonçalves and M. Salomé Cabral, apart from a set of
Fortran-77 subroutines written by R. Piessens and E. de
Doncker, belonging to the suite "Quadpack"
Maintainer: M. Helena Gonçalves
DESCRIPTION | 8 ++++----
MD5 | 19 ++++++++++---------
R/coldControl.R | 2 +-
history.txt |only
man/anova-methods.Rd | 2 +-
man/cold.Rd | 4 ++--
man/coldControl.Rd | 2 +-
man/coldIntegrate.Rd | 2 +-
man/fitted-methods.Rd | 2 +-
man/resid-methods.Rd | 2 +-
man/seizure.rd | 11 ++++++-----
11 files changed, 28 insertions(+), 26 deletions(-)
Title: Grain-size Statistics and Description of Sediment
Diff between G2Sd versions 1.2 dated 2012-01-10 and 2.0 dated 2013-06-27
Description: G2Sd package gives full descriptive statistics and a
physical description of sediment obtained with metric or phi
sieves according to the grain size distribution.
Author: Regis K. Gallon (MNHN), Jerome Fournier (CNRS|MNHN)
Maintainer: Regis K. Gallon
G2Sd-1.2/G2Sd/man/G2Sd-internal.Rd |only
G2Sd-1.2/G2Sd/man/plotgran.Rd |only
G2Sd-2.0/G2Sd/DESCRIPTION | 19
G2Sd-2.0/G2Sd/MD5 | 30 -
G2Sd-2.0/G2Sd/NAMESPACE | 8
G2Sd-2.0/G2Sd/NEWS |only
G2Sd-2.0/G2Sd/R/G2Sd-internal.R | 985 +++++++++++++++++++------------------
G2Sd-2.0/G2Sd/R/grandistrib.R |only
G2Sd-2.0/G2Sd/R/granplot.R | 77 +-
G2Sd-2.0/G2Sd/R/granstat.R | 11
G2Sd-2.0/G2Sd/data/coord_gran.rda |only
G2Sd-2.0/G2Sd/data/granulo.rda |binary
G2Sd-2.0/G2Sd/inst/CITATION | 39 -
G2Sd-2.0/G2Sd/inst/INDEX | 14
G2Sd-2.0/G2Sd/man/G2Sd-package.Rd | 21
G2Sd-2.0/G2Sd/man/coord_gran.Rd |only
G2Sd-2.0/G2Sd/man/grandistrib.Rd |only
G2Sd-2.0/G2Sd/man/granplot.Rd |only
G2Sd-2.0/G2Sd/man/granstat.Rd | 30 -
G2Sd-2.0/G2Sd/man/granulo.Rd | 25
20 files changed, 652 insertions(+), 607 deletions(-)
Title: Aggregation Operators and Preordered Sets
Diff between agop versions 0.1-1 dated 2013-06-27 and 0.1-3 dated 2013-06-27
Description: Tools supporting multi-criteria decision making, including
variable number of criteria, by means of aggregation operators
and preordered sets. Possible applications include, but are not
limited to, scientometrics and bibliometrics.
Author: Marek Gagolewski [aut, cre], Anna Cena [ctb]
Maintainer: Marek Gagolewski
DESCRIPTION | 8 +--
MD5 | 16 +++---
NEWS | 6 ++
inst/doc/agop-Tutorial.pdf |binary
src/agop.h | 26 +++++++----
src/agops_classical.cpp | 28 ++++++------
src/agops_impact.cpp | 68 ++++++++++++++---------------
src/preorders.cpp | 18 +++----
src/prepare_arg.cpp | 104 ++++++++++++++++++++++-----------------------
9 files changed, 145 insertions(+), 129 deletions(-)
Title: An R package to interact with the Project Vote Smart API for
scientific research
Diff between pvsR versions 0.1 dated 2013-05-29 and 0.1.1 dated 2013-06-27
Description: The pvsR package facilitates data retrieval from Project
Vote Smart's rich online data base on US politics via the
Project Vote Smart application programming interface (PVS API).
The functions in this package cover most PVS API classes and
methods and return the requested data in a data frame.
Author: Ulrich Matter
Maintainer: Ulrich Matter
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NAMESPACE | 4 ++--
NEWS | 6 ++++++
R/pvsRequest.R | 2 +-
5 files changed, 17 insertions(+), 11 deletions(-)
Title: Measuring Association and Testing Independence Efficiently
Diff between matie versions 1.0 dated 2013-01-20 and 1.1 dated 2013-06-27
Description: Uses a ratio of weighted distributions to estimate
association between variables in a data set.
Author: Ben Murrell, Dan Murrell & Hugh Murrell.
Maintainer: Hugh Murrell
DESCRIPTION | 12 ++++++------
MD5 | 46 +++++++++++++++++++++++-----------------------
NAMESPACE | 9 +++++++++
R/agram.R | 35 +++++++++++++++++++----------------
R/fdg.R | 18 +++++++++++-------
R/ma.R | 20 +++++++++++++++-----
R/rwt.R | 6 ++++--
R/tap.R | 2 +-
man/agram.Rd | 21 ++++++++++-----------
man/baseballData.Rd | 2 +-
man/fbvs.Rd | 5 +++--
man/fdg.Rd | 11 +++++------
man/ma.Rd | 28 ++++++++++++++++++----------
man/ma.nl.Rd | 5 ++---
man/ma.test.Rd | 20 ++++++++++----------
man/matie-package.Rd | 29 ++++++++++++++++++++++++-----
man/pd.Rd | 4 ++--
man/rwt.Rd | 2 +-
man/sbd.Rd | 4 ++--
man/shpd.Rd | 4 ++--
man/spa.Rd | 49 +++++++++++++++++++++++++++++++------------------
man/std.Rd | 4 ++--
man/tap.Rd | 4 ++--
src/maxlike.c | 9 +++++----
24 files changed, 208 insertions(+), 141 deletions(-)
Title: Visualising bipartite networks and calculating some (ecological)
indices.
Diff between bipartite versions 2.00 dated 2013-03-17 and 2.01 dated 2013-06-27
Description: Bipartite provides functions to visualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focuses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Author: Carsten F. Dormann, Jochen Fruend and Bernd Gruber, with
additional code from Mariano Devoto, Jose Iriondo, Rouven
Strauss and Diego Vazquez, also based on C-code developed by
Nils Bluethgen, Aaron Clauset/Rouven Strauss and Miguel
Rodriguez-Girones.
Maintainer: Carsten F. Dormann
bipartite-2.00/bipartite/R/nested.R |only
bipartite-2.01/bipartite/DESCRIPTION | 9
bipartite-2.01/bipartite/MD5 | 72 -
bipartite-2.01/bipartite/NAMESPACE | 2
bipartite-2.01/bipartite/R/C.score.R | 8
bipartite-2.01/bipartite/R/ND.r | 8
bipartite-2.01/bipartite/R/computeModules.R | 6
bipartite-2.01/bipartite/R/degreedistr.R | 47
bipartite-2.01/bipartite/R/nested.r |only
bipartite-2.01/bipartite/R/nestedrank.R |only
bipartite-2.01/bipartite/R/plotweb.R | 820 +++++++++++------
bipartite-2.01/bipartite/R/second.extinct.R | 33
bipartite-2.01/bipartite/R/slope.bipartite.R | 1
bipartite-2.01/bipartite/R/specieslevel.R | 32
bipartite-2.01/bipartite/R/web2edges.R | 2
bipartite-2.01/bipartite/data/junker2013.rda |only
bipartite-2.01/bipartite/inst/doc/Dormann2008Rnews.pdf |binary
bipartite-2.01/bipartite/man/C.score.Rd | 2
bipartite-2.01/bipartite/man/ND.rd | 4
bipartite-2.01/bipartite/man/bipartite-package.Rd | 23
bipartite-2.01/bipartite/man/closeness_w.Rd | 2
bipartite-2.01/bipartite/man/clustering_tm.Rd | 7
bipartite-2.01/bipartite/man/degreedistr.Rd | 6
bipartite-2.01/bipartite/man/extinction.Rd | 3
bipartite-2.01/bipartite/man/fd.Rd | 2
bipartite-2.01/bipartite/man/grouplevel.Rd | 8
bipartite-2.01/bipartite/man/junker2013.Rd |only
bipartite-2.01/bipartite/man/nested.Rd | 4
bipartite-2.01/bipartite/man/nestedrank.Rd |only
bipartite-2.01/bipartite/man/networklevel.Rd | 10
bipartite-2.01/bipartite/man/plotweb.Rd | 20
bipartite-2.01/bipartite/man/second.extinct.Rd | 8
bipartite-2.01/bipartite/man/slope.bipartite.Rd | 6
bipartite-2.01/bipartite/man/specieslevel.Rd | 36
bipartite-2.01/bipartite/man/versionlog.Rd | 2
bipartite-2.01/bipartite/man/visweb.Rd | 3
bipartite-2.01/bipartite/man/webs2array.Rd | 3
bipartite-2.01/bipartite/man/wine.rd | 6
bipartite-2.01/bipartite/src/dendro.h | 6
bipartite-2.01/bipartite/src/identifyModules.cc | 10
40 files changed, 813 insertions(+), 398 deletions(-)
Title: Interfaces to various state-of-art SVD and eigensolvers
Diff between svd versions 0.3.1-2 dated 2013-04-14 and 0.3.2 dated 2013-06-27
Description: This package provides various R bindings to various SVD
and eigensolvers (PROPACK, nuTRLan)
Author: Anton Korobeynikov
Maintainer: Anton Korobeynikov
DESCRIPTION | 6
MD5 | 16 -
NAMESPACE | 1
R/extmat.R | 6
man/extmat.Rd | 14 -
src/extmat.c | 40 +++
src/trlan/trlan.c | 566 ++++++++++++++++++++++++++++++++++------------------
src/trlan/trlaux.c | 192 ++++++++++++-----
src/trlan/trlcore.c | 16 +
9 files changed, 595 insertions(+), 262 deletions(-)
Title: (Standardised) Major Axis Estimation and Testing Routines
Diff between smatr versions 3.3 dated 2013-04-05 and 3.4 dated 2013-06-27
Description: This package provides methods of fitting bivariate lines
in allometry using the major axis (MA) or standardised major
axis (SMA), and for making inferences about such lines. The
available methods of inference include confidence intervals and
one-sample tests for slope and elevation, testing for a common
slope or elevation amongst several allometric lines,
constructing a confidence interval for a common slope or
elevation, and testing for no shift along a common axis,
amongst several samples.
Author: David Warton
Maintainer: Remko Duursma
DESCRIPTION | 8 ++---
MD5 | 22 +++++++------
NAMESPACE | 14 +++++---
R/alpha.fun.R | 32 ++++++++++----------
R/fitted.sma.R | 83 ++++++++++++++++++++++++++++++++++++++++------------
R/logLik_sma.R |only
R/nicePlot.R | 12 ++++++-
R/predict.sma.R |only
R/sma.R | 21 ++++++-------
data/leaflife.RData |binary
data/leafmeas.RData |binary
man/fitted.sma.Rd | 14 +++++---
man/sma.Rd | 5 +--
13 files changed, 137 insertions(+), 74 deletions(-)
Title: Implementation of POSIXct work-alike for 365 and 360 day
calendars.
Diff between PCICt versions 0.5-3 dated 2013-02-07 and 0.5-4 dated 2013-06-27
Description: This package implements a work-alike to R's POSIXct class
which implements 360- and 365-day calendars in addition to the
gregorian calendar.
Author: David Bronaugh
Maintainer: David Bronaugh
CHANGELOG | 4 ++++
DESCRIPTION | 13 +++++++------
MD5 | 6 +++---
tests/bootstrap.R | 12 +++++++-----
4 files changed, 21 insertions(+), 14 deletions(-)
Title: Markdown rendering for R
Diff between markdown versions 0.6 dated 2013-06-18 and 0.6.1 dated 2013-06-27
Description: Markdown is a plain-text formatting syntax that can be
converted to XHTML or other formats. This package provides R
bindings to the Sundown markdown rendering library.
Author: JJ Allaire, Jeffrey Horner, Vicent Marti, and Natacha Porte
Maintainer: Yihui Xie
DESCRIPTION | 10
MD5 | 22
NEWS | 2
R/renderMarkdown.R | 6
R/rpubsUpload.R | 6
inst/COPYING | 916 +++++++++++++----------------------------
inst/doc/markdown-examples.R | 16
inst/include/markdown_rstubs.c | 6
inst/include/markdown_rstubs.h | 6
src/Rinit.c | 6
src/Rmarkdown.c | 6
src/Rmarkdown.h | 6
12 files changed, 342 insertions(+), 666 deletions(-)
Title: Sequential Parametric and Nonparametric Change Detection
Diff between cpm versions 1.0 dated 2012-02-06 and 1.1 dated 2013-06-27
Description: Sequential and batch change detection for univariate data
streams, using the change point model framework. Functions are
provided to allow the parametric monitoring of sequences of
Gaussian and Bernoulli random variables, along with more
general nonparametric functions for monitoring sequences which
have an unspecified or unknown distribution.
Author: Gordon J. Ross
Maintainer: Gordon J. Ross
cpm-1.0/cpm/inst/CITATION |only
cpm-1.0/cpm/inst/doc/chap1_changemean.pdf |only
cpm-1.0/cpm/inst/doc/chap1_changevar.pdf |only
cpm-1.0/cpm/inst/doc/jabref.bib |only
cpm-1.0/cpm/inst/doc/multiplechanges.pdf |only
cpm-1.0/cpm/inst/doc/realdata1.pdf |only
cpm-1.0/cpm/inst/doc/realdata2.pdf |only
cpm-1.0/cpm/inst/doc/realdata3.pdf |only
cpm-1.0/cpm/inst/doc/singlechange1.pdf |only
cpm-1.0/cpm/inst/doc/singlechange2.pdf |only
cpm-1.0/cpm/src/hyper.c |only
cpm-1.0/cpm/src/hyper.h |only
cpm-1.0/cpm/src/hypercpp.cpp |only
cpm-1.1/cpm/DESCRIPTION | 24
cpm-1.1/cpm/MD5 | 97 +-
cpm-1.1/cpm/NAMESPACE | 2
cpm-1.1/cpm/R/ChangePointModeljoint.R |only
cpm-1.1/cpm/R/detectChangePoint.R | 3
cpm-1.1/cpm/R/detectChangePointBatch.R |only
cpm-1.1/cpm/R/getBatchThreshold.R |only
cpm-1.1/cpm/R/loadThresholds.R | 3
cpm-1.1/cpm/R/sysdata.rda |binary
cpm-1.1/cpm/R/verifyArguments.R | 10
cpm-1.1/cpm/inst/doc/cpm.R |only
cpm-1.1/cpm/inst/doc/cpm.Rnw | 564 ----------------
cpm-1.1/cpm/inst/doc/cpm.pdf |binary
cpm-1.1/cpm/man/cpmPackage.Rd | 13
cpm-1.1/cpm/man/detectChangePoint.Rd | 34
cpm-1.1/cpm/man/detectChangePointBatch.Rd |only
cpm-1.1/cpm/man/getBatchThreshold.Rd |only
cpm-1.1/cpm/man/makeChangePointModel.Rd | 11
cpm-1.1/cpm/man/processStream.Rd | 14
cpm-1.1/cpm/src/ChangePointModel.cpp | 7
cpm-1.1/cpm/src/ChangePointModel.h | 6
cpm-1.1/cpm/src/ChangePointModelCVM.cpp | 2
cpm-1.1/cpm/src/ChangePointModelCVM.h | 2
cpm-1.1/cpm/src/ChangePointModelExponential.cpp |only
cpm-1.1/cpm/src/ChangePointModelExponential.h |only
cpm-1.1/cpm/src/ChangePointModelExponentialAdjusted.cpp |only
cpm-1.1/cpm/src/ChangePointModelExponentialAdjusted.h |only
cpm-1.1/cpm/src/ChangePointModelF.h | 2
cpm-1.1/cpm/src/ChangePointModelFET.cpp | 5
cpm-1.1/cpm/src/ChangePointModelFET.h | 2
cpm-1.1/cpm/src/ChangePointModelJointNormal.cpp | 3
cpm-1.1/cpm/src/ChangePointModelJointNormal.h | 4
cpm-1.1/cpm/src/ChangePointModelJointNormalAdjusted.cpp |only
cpm-1.1/cpm/src/ChangePointModelJointNormalAdjusted.h |only
cpm-1.1/cpm/src/ChangePointModelJointNormalHawkins.cpp |only
cpm-1.1/cpm/src/ChangePointModelJointNormalHawkins.h |only
cpm-1.1/cpm/src/ChangePointModelKS.cpp | 2
cpm-1.1/cpm/src/ChangePointModelKS.h | 2
cpm-1.1/cpm/src/ChangePointModelLepage.h | 2
cpm-1.1/cpm/src/ChangePointModelMW.cpp | 2
cpm-1.1/cpm/src/ChangePointModelMW.h | 2
cpm-1.1/cpm/src/ChangePointModelMood.cpp | 2
cpm-1.1/cpm/src/ChangePointModelMood.h | 2
cpm-1.1/cpm/src/ChangePointModelPoisson.cpp |only
cpm-1.1/cpm/src/ChangePointModelPoisson.h |only
cpm-1.1/cpm/src/ChangePointModelRInterface.cpp | 84 ++
cpm-1.1/cpm/src/ChangePointModelT.cpp | 10
cpm-1.1/cpm/src/ChangePointModelT.h | 2
cpm-1.1/cpm/src/ChangePointModelWithOrders.h | 2
cpm-1.1/cpm/src/ChangePointModelWithRanks.h | 2
cpm-1.1/cpm/src/cpmMLE.c | 54 +
64 files changed, 299 insertions(+), 677 deletions(-)
Title: Average bioequivalence and bioavailability data analysis tool
Diff between bear versions 2.5.5 dated 2013-05-07 and 2.5.6 dated 2013-06-27
Description: An average bioequivalence (ABE) and bioavailability data
analysis tool including sample size estimation,
noncompartmental analysis (NCA), ANOVA (lm) for a standard
RT/TR 2x2x2 crossover design or a parallel study. And linear
mixed effect model (lme of nlme) for a 2-treatment, 2-sequence
with 2 periods or more (i.e. 2x2x3/2x2x4) replicate crossover
design.
Author: Hsin-ya Lee, Yung-jin Lee
Maintainer: Yung-jin Lee
DESCRIPTION | 8 +-
MD5 | 82 ++++++++++++-----------
NEWS | 31 ++++++++
R/ARS.r | 143 ++++++++++++++++++++++++++++++----------
R/NCA.BANOVAmenu.r | 4 -
R/NCA.r | 55 ++++++++++++++-
R/NCAoutput.r | 84 ++++++++++++++++--------
R/NCAplot.r | 2
R/NCAreglplot.r | 136 ++++++++++++++++++++++----------------
R/NCAsave.r | 4 -
R/NCAselect.r | 42 ++++++------
R/NCAselectsave.r | 4 -
R/OutputFilez.r | 4 -
R/Singlego.r | 2
R/TTT.r | 154 +++++++++++++++++++++++++++++++++++---------
R/TTTAIC.r | 141 ++++++++++++++++++++++++++++++----------
R/TTTARS.r | 138 ++++++++++++++++++++++++++++++---------
R/about.bear.r | 2
R/aic.r | 141 ++++++++++++++++++++++++++++++----------
R/bye.r | 4 -
R/description_AIC.r | 10 +-
R/description_ARS.r | 2
R/description_BANOVA.r | 2
R/description_NCA.r | 20 ++---
R/description_NCAinput.r | 6 -
R/description_ParaMIX.r | 2
R/description_TOST_lnCmax.r | 2
R/description_TTT.r | 10 +-
R/description_TTTAIC.r | 2
R/description_TTTARS.r | 2
R/description_drugcode.r | 23 +++---
R/description_import.r | 4 -
R/description_load.r | 4 -
R/description_plot.r | 4 -
R/description_pointselect.r | 24 ++++--
R/description_version.r | 4 -
R/go.r | 68 +------------------
R/go2menu.r |only
R/logo_plot_desc.r | 6 -
R/sizemenu.r | 2
R/test.nca_stat.r | 2
R/zzz.R | 2
man/go2menu.rd |only
43 files changed, 927 insertions(+), 455 deletions(-)
Title: Adaptive differential evolution, b6e6rl variant
Diff between b6e6rl versions 1.0 dated 2013-06-20 and 1.1 dated 2013-06-27
Description: This package contains b6e6rl algorithm, adaptive
differential evolution for global optimization.
Author: Marek Spruzina
Maintainer: Marek Spruzina
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/CRexp_set.R | 30 +++++++++++++++---------------
R/b6e6rl.R | 3 +--
4 files changed, 23 insertions(+), 24 deletions(-)
Title: Model selection and multimodel inference based on (Q)AIC(c)
Diff between AICcmodavg versions 1.30 dated 2013-05-16 and 1.31 dated 2013-06-27
Description: This package includes functions to create model selection
tables based on Akaike's information criterion (AIC) and the
second-order AIC (AICc), as well as their quasi-likelihood
counterparts (QAIC, QAICc). Tables are printed with delta AIC
and Akaike weights. The package also features functions to
conduct classic model averaging (multimodel inference) for a
given parameter of interest and predicted values, as well as a
shrinkage version of model averaging parameter estimates.
Other handy functions enable the computation of relative
variable importance, evidence ratios, and confidence sets for
the best model. The present version works with Cox regression
('coxph' class), linear models ('lm' class), generalized linear
models ('glm' class), linear models fit by generalized least
squares ('gls' class), linear mixed models ('lme' class),
generalized linear mixed models ('mer' and 'merMod' classes),
multinomial and ordinal logistic regressions ('multinom',
'polr', 'clm', and 'clmm' classes), robust regression models
('rlm' class), nonlinear models ('nls' class), and nonlinear
mixed models ('nlme' class). The package also supports various
models incorporating detection probabilities such as
single-season occupancy models ('unmarkedFitOccu' and
'unmarkedFitOccuFP classes), multiple-season occupancy models
('unmarkedFitColExt' class), single-season heterogeneity models
('unmarkedFitOccuRN' class), single-season and multiple-season
N-mixture models for repeated counts ('unmarkedFitPCount' and
'unmarkedFitPCO' classes, respectively), and distance sampling
models ('unmarkedFitDS' and 'unmarkedFitGDS' classes).
Author: Marc J. Mazerolle
Maintainer: Marc J. Mazerolle
DESCRIPTION | 34 +--
MD5 | 52 ++--
R/AICc.R | 6
R/AICc.mer.R | 23 ++
R/aictab.R | 36 +--
R/aictab.mer.R | 68 ++++++
R/fam.link.mer.r | 128 ++++++++----
R/importance.R | 29 +-
R/modavg.R | 35 ++-
R/modavg.effect.mer.r | 140 +++++++++++++
R/modavg.effect.r | 25 +-
R/modavg.mer.R | 242 ++++++++++++++++++++++
R/modavg.shrink.R | 34 +--
R/modavg.shrink.mer.R | 110 ++++++++++
R/modavgpred.R | 138 ++++++++++++-
R/predictSE.mer.r | 488 +++++++++++++++++++++++++++++++++++++++++++++-
inst/NEWS | 9
man/AICc.Rd | 42 ++-
man/AICcmodavg-package.Rd | 51 ++--
man/aictab.Rd | 35 +--
man/extractSE.mer.Rd | 10
man/fam.link.mer.Rd | 14 -
man/modavg.Rd | 47 ++--
man/modavg.effect.Rd | 23 +-
man/modavg.shrink.Rd | 29 +-
man/modavgpred.Rd | 28 +-
man/predictSE.mer.Rd | 12 -
27 files changed, 1609 insertions(+), 279 deletions(-)