Title: classes and methods for spatial data
Diff between sp versions 1.0-9 dated 2013-04-22 and 1.0-11 dated 2013-06-30
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
Author: Edzer Pebesma [aut, cre], Roger Bivand [aut], Barry Rowlingson
[ctb], Virgilio Gomez-Rubio [ctb]
Maintainer: Edzer Pebesma
sp-1.0-11/sp/DESCRIPTION | 13
sp-1.0-11/sp/MD5 | 89
sp-1.0-11/sp/NAMESPACE | 5
sp-1.0-11/sp/R/CRS-methods.R | 8
sp-1.0-11/sp/R/Spatial-methods.R | 7
sp-1.0-11/sp/R/SpatialGridDataFrame-methods.R | 25
sp-1.0-11/sp/R/SpatialLines-methods.R | 6
sp-1.0-11/sp/R/SpatialPoints-methods.R | 16
sp-1.0-11/sp/R/disaggregate.R |only
sp-1.0-11/sp/R/gridlines.R | 23
sp-1.0-11/sp/R/sp_spat1.R |only
sp-1.0-11/sp/R/zerodist.R | 7
sp-1.0-11/sp/inst/ChangeLog | 3228 ++++++++------------
sp-1.0-11/sp/inst/doc/csdacm.R |only
sp-1.0-11/sp/inst/doc/csdacm.Rnw |only
sp-1.0-11/sp/inst/doc/csdacm.pdf |only
sp-1.0-11/sp/inst/doc/intro_sp.pdf |binary
sp-1.0-11/sp/inst/doc/over.pdf |binary
sp-1.0-11/sp/inst/external/seamap105_mod.csv |only
sp-1.0-11/sp/inst/include/sp_xports.c | 6
sp-1.0-11/sp/man/CRS-class.Rd | 8
sp-1.0-11/sp/man/Spatial-class.Rd | 4
sp-1.0-11/sp/man/SpatialGridDataFrame-class.Rd | 2
sp-1.0-11/sp/man/SpatialPoints-class.Rd | 3
sp-1.0-11/sp/man/SpatialPointsDataFrame-class.Rd | 1
sp-1.0-11/sp/man/SpatialPolygons-class.Rd | 17
sp-1.0-11/sp/man/SpatialPolygonsDataFrame-class.Rd | 4
sp-1.0-11/sp/man/as.SpatialPolygons.GridTopology.Rd | 3
sp-1.0-11/sp/man/disaggregate.Rd |only
sp-1.0-11/sp/man/gridlines.Rd | 6
sp-1.0-11/sp/man/is.projected.Rd | 4
sp-1.0-11/sp/man/nowrapSpatialLines.Rd | 3
sp-1.0-11/sp/man/polygons.Rd | 8
sp-1.0-11/sp/man/recenter-methods.Rd | 6
sp-1.0-11/sp/man/spDistsN1.Rd | 4
sp-1.0-11/sp/man/spTransform.Rd | 2
sp-1.0-11/sp/man/spplot.Rd | 26
sp-1.0-11/sp/man/zerodist.Rd | 4
sp-1.0-11/sp/src/gcdist.c | 14
sp-1.0-11/sp/src/init.c | 2
sp-1.0-11/sp/src/sp.h | 3
sp-1.0-11/sp/src/sp_xports.c | 6
sp-1.0-11/sp/src/zerodist.c | 18
sp-1.0-11/sp/tests/Examples/sp-Ex.Rout.save | 89
sp-1.0-11/sp/tests/fail1.R | 3
sp-1.0-11/sp/tests/fail1.Rout.save | 8
sp-1.0-11/sp/vignettes |only
sp-1.0-9/sp/ChangeLog |only
sp-1.0-9/sp/x |only
sp-1.0-9/sp/xx |only
50 files changed, 1668 insertions(+), 2013 deletions(-)
Title: Adapt numerical records to fit (in)equality restrictions with
the Successive Projection Algorithm
Diff between rspa versions 0.1-2 dated 2013-05-08 and 0.1-3 dated 2013-06-30
Description: Based on (optionally sparse) quadratic optimization with
the main algorithms implemented in C. Includes features for
easy processing of many (smaller) records. The algorithm has
been tested on fairly large optimization problems with up to a
few million variables and several hundred thousand
restrictions.
Author: Mark van der Loo
Maintainer: Mark van der Loo
DESCRIPTION | 6 +++---
MD5 | 15 ++++++++-------
NEWS | 5 ++++-
inst/doc/getting_started.R |only
inst/doc/getting_started.Rnw | 1 -
inst/doc/getting_started.pdf |binary
vignettes/Rplots.pdf |binary
vignettes/figure/unnamed-chunk-11.pdf |binary
vignettes/getting_started.Rnw | 1 -
9 files changed, 15 insertions(+), 13 deletions(-)
Title: Sample Generation by Replacement
Diff between sgr versions 1.0 dated 2013-03-18 and 1.0.1 dated 2013-06-30
Description: The library for Sample Generation by Replacement
simulations. The package can be used to perform fake data
analysis according to the sample generation by replacement
approach. It includes functions for making simple inferences
about discrete/ordinal fake data. The package allows to study
the implications of fake data for empirical results.
Author: Massimiliano Pastore & Luigi Lombardi
Maintainer: Massimiliano Pastore
DESCRIPTION | 14 +++++++++-----
MD5 | 28 ++++++++++++++--------------
R/partition.replacement.R | 2 ++
data/smokers.rda |binary
man/model.fake.par.Rd | 4 ++--
man/partition.replacement.Rd | 14 +++++++-------
man/pfake.Rd | 8 ++++----
man/pfakebad.Rd | 4 ++--
man/pfakegood.Rd | 4 ++--
man/rdatagen.Rd | 15 +++++++--------
man/rdatarepl.Rd | 2 +-
man/replacement.matrix.Rd | 10 +++++-----
man/sgr-package.Rd | 7 ++++---
man/smokers.Rd | 10 +++++-----
sgr-Ex.R | 17 +++++++++--------
15 files changed, 73 insertions(+), 66 deletions(-)
Title: Utility function for defining S3 methods
Diff between R.methodsS3 versions 1.4.2 dated 2012-06-27 and 1.4.4 dated 2013-06-30
Description: Methods that simplify the setup of S3 generic functions
and S3 methods. Major effort has been made in making
definition of methods as simple as possible with a minimum of
maintenance for package developers. For example, generic
functions are created automatically, if missing, and naming
conflict are automatically solved, if possible. The method
setMethodS3() is a good start for those who in the future may
want to migrate to S4. This is a cross-platform package
implemented in pure R that generates standard S3 methods.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
R.methodsS3-1.4.2/R.methodsS3/incl |only
R.methodsS3-1.4.4/R.methodsS3/DESCRIPTION | 21
R.methodsS3-1.4.4/R.methodsS3/MD5 | 30 -
R.methodsS3-1.4.4/R.methodsS3/inst/NEWS | 8
R.methodsS3-1.4.4/R.methodsS3/man/Non-documented_objects.Rd | 82 +--
R.methodsS3-1.4.4/R.methodsS3/man/R.KEYWORDS.Rd | 60 +-
R.methodsS3-1.4.4/R.methodsS3/man/R.methodsS3-package.Rd | 156 +++----
R.methodsS3-1.4.4/R.methodsS3/man/findDispatchMethodsS3.Rd | 86 ++--
R.methodsS3-1.4.4/R.methodsS3/man/getDispatchMethodS3.Rd | 84 ++-
R.methodsS3-1.4.4/R.methodsS3/man/getGenericS3.Rd | 80 +--
R.methodsS3-1.4.4/R.methodsS3/man/getMethodS3.Rd | 82 +--
R.methodsS3-1.4.4/R.methodsS3/man/isGenericS3.Rd | 92 ++--
R.methodsS3-1.4.4/R.methodsS3/man/isGenericS4.Rd | 88 ++--
R.methodsS3-1.4.4/R.methodsS3/man/setGenericS3.Rd | 158 +++----
R.methodsS3-1.4.4/R.methodsS3/man/setMethodS3.Rd | 256 ++++++------
R.methodsS3-1.4.4/R.methodsS3/man/throw.Rd | 112 ++---
16 files changed, 712 insertions(+), 683 deletions(-)
Title: Miscellaneous useful functions
Diff between rje versions 1.5 dated 2013-05-18 and 1.6 dated 2013-06-30
Description: A series of useful functions, some available in different
forms in other packages, but which have been extended or
modified in some way considered useful to the author.
Author: Robin Evans
Maintainer: Robin Evans
rje-1.5/rje/R/and0.R |only
rje-1.5/rje/R/arrayInd.R |only
rje-1.5/rje/R/combinations.R |only
rje-1.5/rje/R/condition.table.R |only
rje-1.5/rje/R/condition.table2.R |only
rje-1.5/rje/R/ddirichlet.R |only
rje-1.5/rje/R/expit.R |only
rje-1.5/rje/R/fsapply.R |only
rje-1.5/rje/R/greaterThan.R |only
rje-1.5/rje/R/indexBox.R |only
rje-1.5/rje/R/intervention.table.R |only
rje-1.5/rje/R/is.subset.R |only
rje-1.5/rje/R/is.wholenumber.R |only
rje-1.5/rje/R/last.R |only
rje-1.5/rje/R/logit.R |only
rje-1.5/rje/R/or0.R |only
rje-1.5/rje/R/patternRepeat.R |only
rje-1.5/rje/R/powerSet.R |only
rje-1.5/rje/R/powerSetMat.R |only
rje-1.5/rje/R/printPercentage.R |only
rje-1.5/rje/R/quickSort.R |only
rje-1.5/rje/R/rdirichlet.R |only
rje-1.5/rje/R/setmatch.R |only
rje-1.5/rje/R/setsetdiff.R |only
rje-1.5/rje/R/setsetequal.R |only
rje-1.5/rje/R/subarray.R |only
rje-1.5/rje/R/subsetMatrix.R |only
rje-1.5/rje/R/subsetOrder.R |only
rje-1.5/rje/R/subsetmatch.R |only
rje-1.5/rje/R/subtable.R |only
rje-1.5/rje/R/z%subof%.R |only
rje-1.6/rje/ChangeLog | 10 +-
rje-1.6/rje/DESCRIPTION | 10 +-
rje-1.6/rje/MD5 | 56 +++-----------
rje-1.6/rje/R/rje.R |only
rje-1.6/rje/man/Dirichlet.Rd | 132 +++++++++++++++++-----------------
rje-1.6/rje/man/and0.Rd | 5 -
rje-1.6/rje/man/armijo.Rd |only
rje-1.6/rje/man/arrayInd.Rd | 4 -
rje-1.6/rje/man/condition.table.Rd | 6 -
rje-1.6/rje/man/cubeHelix.Rd |only
rje-1.6/rje/man/fsapply.Rd | 60 +++++++--------
rje-1.6/rje/man/greaterThan.Rd | 2
rje-1.6/rje/man/intervention.table.Rd | 4 -
rje-1.6/rje/man/quickSort.Rd | 4 -
rje-1.6/rje/man/rje-package.Rd | 5 -
46 files changed, 135 insertions(+), 163 deletions(-)
Title: Rank Estimation for Linear Models
Diff between Rfit versions 0.14 dated 2011-10-13 and 0.17 dated 2013-06-30
Description: R estimation and inference for linear models. Estimation
is for general scores and a library of commonly used score
functions is included.
Author: John Kloke, Joseph McKean
Maintainer: John Kloke
Rfit-0.14/Rfit/R/default.rfit.R |only
Rfit-0.17/Rfit/DESCRIPTION | 9 +++++----
Rfit-0.17/Rfit/MD5 | 26 +++++++++++++++++---------
Rfit-0.17/Rfit/NAMESPACE |only
Rfit-0.17/Rfit/R/gettau.R | 2 +-
Rfit-0.17/Rfit/R/gettauF0.R |only
Rfit-0.17/Rfit/R/jaeckel.R | 26 +++++++++++++++++++++-----
Rfit-0.17/Rfit/R/oneway.rfit.R | 4 ++++
Rfit-0.17/Rfit/R/print.summary.rfit.R | 2 +-
Rfit-0.17/Rfit/R/rfit.default.R |only
Rfit-0.17/Rfit/R/summary.rfit.R | 17 +++++++++++------
Rfit-0.17/Rfit/data/CardioRiskFactors.rda |only
Rfit-0.17/Rfit/man/CardioRiskFactors.Rd |only
Rfit-0.17/Rfit/man/gettau.Rd | 19 ++++---------------
Rfit-0.17/Rfit/man/rfit.Rd | 6 ++++--
Rfit-0.17/Rfit/src |only
16 files changed, 68 insertions(+), 43 deletions(-)
Title: Access to The Dataverse Network API
Diff between dvn versions 0.1 dated 2013-01-31 and 0.2 dated 2013-06-30
Description: Provides access to The Dataverse Network API via the RCurl
package, enabling access to archived data (and metadata), along
with a number of functions to translate responses to API calls
into R data structures using the XML package.
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper
DESCRIPTION | 9 +++++----
MD5 | 9 +++++----
NEWS | 4 ++++
R/dvn.r | 33 +++++++++++++++++++++------------
README.md |only
man/dvn-package.Rd | 38 +++++++++++++++++++++++---------------
6 files changed, 58 insertions(+), 35 deletions(-)
Title: Allele Retention, Inbreeding, and Demography
Diff between AlleleRetain versions 1.3 dated 2013-01-02 and 1.3.1 dated 2013-06-30
Description: Simulate the effect of management or demography on allele
retention and inbreeding accumulation in bottlenecked
populations of animals with overlapping generations.
Author: Emily Weiser
Maintainer: Emily Weiser
DESCRIPTION | 7 ++++---
MD5 | 6 +++---
R/AlleleRetain.R | 1 +
inst/doc/AlleleRetain_User_Guide.pdf |binary
4 files changed, 8 insertions(+), 6 deletions(-)
Title: Forecasting functions for time series and linear models
Diff between forecast versions 4.05 dated 2013-06-19 and 4.06 dated 2013-06-30
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 3 +++
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/errors.R | 4 ++--
4 files changed, 12 insertions(+), 9 deletions(-)
Title: RSDA - R to Symbolic Data Analysis
Diff between RSDA versions 1.0 dated 2013-05-29 and 1.1 dated 2013-06-30
Description: Symbolic Data Analysis (SDA) was proposed by professor
Edwin DIDAY in 1987, the main purpose of SDA is to substitute
the set of rows (cases) in the data table for a concept (second
order statistical unit). This package implements, to the
symbolic case, certain techniques of automatic classification,
as well as some linear models.
Author: Oldemar Rodriguez R. with contributions from Johnny Villalobos
M.
Maintainer: Oldemar Rodriguez
DESCRIPTION | 14 +++--
MD5 | 118 ++++++++++++++++++++++++++++++++++++----------
NAMESPACE | 7 +-
R/Dbload.R |only
R/R2.L.R |only
R/R2.U.R |only
R/RMSE.L.R |only
R/RMSE.U.R |only
R/Scon.R |only
R/Sconcept.R |only
R/Shis.R |only
R/Sint.R |only
R/Sobject.R |only
R/Sset.R |only
R/cfa.CVPRealz.R |only
R/cfa.Czz.R |only
R/cfa.MatrixZ.R |only
R/cfa.minmax.R |only
R/cfa.scatterplot.R |only
R/cfa.totals.R |only
R/deter.coefficient.R |only
R/interscal.B.R |only
R/interscal.R |only
R/interscal.delta.R |only
R/interval.dist.R | 61 +++++++++++++++--------
R/interval.dist.tobj.R | 93 +++++++++++++++++++++---------------
R/predictsym.glm.R |only
R/predictsym.lm.R |only
R/sym.cfa.R |only
R/sym.glm.R |only
R/sym.lm.R | 91 +++++++++++++++--------------------
R/sym.lm.bi.R |only
R/sym.normalize.R |only
data/Cardiological.rda |only
data/StudentsGrades.rda |binary
data/USCrime.rda |only
data/VeterinaryData.rda |binary
data/ex1_db2so.rda |only
data/ex_cfa1.rda |only
data/ex_cfa2.rda |only
data/example1.rda |binary
data/example2.rda |binary
data/example3.rda |binary
data/example4.rda |binary
data/example5.rda |binary
data/example6.rda |binary
data/example7.rda |binary
data/int_prost_test.rda |only
data/int_prost_train.rda |only
data/lynne1.rda |binary
data/lynne2.rda |binary
data/oils.rda |binary
data/uscrime_int.rda |only
man/Cardiological.Rd |only
man/Dbload.Rd |only
man/R2.L.Rd |only
man/R2.U.Rd |only
man/RMSE.L.Rd |only
man/RMSE.U.Rd |only
man/RSDA-package.Rd | 4 -
man/Scon.Rd |only
man/Sconcept.Rd |only
man/Shis.Rd |only
man/Sint.Rd |only
man/Sobject.Rd |only
man/Sset.Rd |only
man/USCrime.Rd |only
man/cfa.CVPRealz.Rd |only
man/cfa.Czz.Rd |only
man/cfa.MatrixZ.Rd |only
man/cfa.minmax.Rd |only
man/cfa.scatterplot.Rd |only
man/cfa.totals.Rd |only
man/deter.coefficient.Rd |only
man/display.sym.table.Rd | 1
man/ex1_db2so.Rd |only
man/ex_cfa1.Rd |only
man/ex_cfa2.Rd |only
man/int_prost_test.Rd |only
man/int_prost_train.Rd |only
man/interscal.B.Rd |only
man/interscal.Rd |only
man/interscal.delta.Rd |only
man/interval.dist.Rd | 2
man/interval.dist.tobj.Rd | 3 -
man/predictsym.glm.Rd |only
man/predictsym.lm.Rd |only
man/sym.cfa.Rd |only
man/sym.cov.Rd | 4 -
man/sym.glm.Rd |only
man/sym.lm.Rd | 101 +++++++++++++++++----------------------
man/sym.lm.bi.Rd |only
man/sym.normalize.Rd |only
man/sym.variance.Rd | 4 -
man/uscrime_int.Rd |only
95 files changed, 298 insertions(+), 205 deletions(-)
Title: vcd extensions and additions
Diff between vcdExtra versions 0.5-7 dated 2013-03-05 and 0.5-10 dated 2013-06-30
Description: Provides additional data sets, methods and documentation
to complement the vcd package for Visualizing Categorical Data
and the gnm package for Generalized Nonlinear Models. In
particular, vcdExtra extends mosaic, assoc and sieve plots from
vcd to handle glm() and gnm() models and adds a 3D version in
mosaic3d.
Author: Michael Friendly with Heather Turner, Achim Zeileis, Duncan
Murdoch and David Firth
Maintainer: Michael Friendly
vcdExtra-0.5-10/vcdExtra/DESCRIPTION | 15
vcdExtra-0.5-10/vcdExtra/MD5 | 103 +++---
vcdExtra-0.5-10/vcdExtra/NEWS | 10
vcdExtra-0.5-10/vcdExtra/R/datasets.R | 28 +
vcdExtra-0.5-10/vcdExtra/data/Abortion.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Alligator.RData |binary
vcdExtra-0.5-10/vcdExtra/data/Bartlett.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Caesar.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Cancer.rda |binary
vcdExtra-0.5-10/vcdExtra/data/DaytonSurvey.RData |binary
vcdExtra-0.5-10/vcdExtra/data/Detergent.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Donner.RData |only
vcdExtra-0.5-10/vcdExtra/data/Draft1970.RData |only
vcdExtra-0.5-10/vcdExtra/data/Draft1970table.RData |only
vcdExtra-0.5-10/vcdExtra/data/Dyke.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Fungicide.rda |binary
vcdExtra-0.5-10/vcdExtra/data/GSS.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Gilby.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Hauser79.RData |binary
vcdExtra-0.5-10/vcdExtra/data/Heart.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Heckman.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Hoyt.rda |binary
vcdExtra-0.5-10/vcdExtra/data/ICU.rda |binary
vcdExtra-0.5-10/vcdExtra/data/JobSat.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Mammograms.RData |binary
vcdExtra-0.5-10/vcdExtra/data/Mental.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Mobility.rda |binary
vcdExtra-0.5-10/vcdExtra/data/TV.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Vietnam.rda |binary
vcdExtra-0.5-10/vcdExtra/data/Yamaguchi87.RData |binary
vcdExtra-0.5-10/vcdExtra/inst/doc/vcd-tutorial.R |only
vcdExtra-0.5-10/vcdExtra/inst/doc/vcd-tutorial.Rnw | 312 +++++++++++++++++---
vcdExtra-0.5-10/vcdExtra/inst/doc/vcd-tutorial.pdf |binary
vcdExtra-0.5-10/vcdExtra/man/CMHtest.Rd | 11
vcdExtra-0.5-10/vcdExtra/man/Donner.Rd |only
vcdExtra-0.5-10/vcdExtra/man/Draft1970.Rd |only
vcdExtra-0.5-10/vcdExtra/man/Draft1970table.Rd |only
vcdExtra-0.5-10/vcdExtra/man/Dyke.Rd | 31 +
vcdExtra-0.5-10/vcdExtra/man/Hauser79.Rd | 5
vcdExtra-0.5-10/vcdExtra/man/Kway.Rd | 8
vcdExtra-0.5-10/vcdExtra/man/Vietnam.Rd | 7
vcdExtra-0.5-10/vcdExtra/man/Yamaguchi87.Rd | 3
vcdExtra-0.5-10/vcdExtra/man/collapse.table.Rd | 49 +++
vcdExtra-0.5-10/vcdExtra/man/datasets.Rd | 14
vcdExtra-0.5-10/vcdExtra/man/mosaic.glm.Rd | 7
vcdExtra-0.5-10/vcdExtra/man/mosaic3d.Rd | 3
vcdExtra-0.5-10/vcdExtra/man/vcdExtra-package.Rd | 8
vcdExtra-0.5-10/vcdExtra/vignettes/vcd-tutorial.Rnw | 312 +++++++++++++++++---
vcdExtra-0.5-7/vcdExtra/vignettes/fig |only
49 files changed, 763 insertions(+), 163 deletions(-)
Title: Phylogenetic Tools for comparative biology (and other things)
Diff between phytools versions 0.2-80 dated 2013-05-31 and 0.2-90 dated 2013-06-30
Description: phytools provides various functions for phylogenetic
analysis, mostly relevant to comparative biology.
Author: Liam J. Revell
Maintainer: Liam J. Revell
phytools-0.2-80/phytools/R/bind.tip.R |only
phytools-0.2-90/phytools/DESCRIPTION | 8
phytools-0.2-90/phytools/MD5 | 33 +-
phytools-0.2-90/phytools/NAMESPACE | 6
phytools-0.2-90/phytools/R/brownieREML.R | 44 +--
phytools-0.2-90/phytools/R/evol.vcv.R | 315 +++++++---------------
phytools-0.2-90/phytools/R/fancyTree.R | 5
phytools-0.2-90/phytools/R/phylomorphospace.R | 8
phytools-0.2-90/phytools/R/phylomorphospace3d.R | 9
phytools-0.2-90/phytools/R/plotSimmap.R | 49 +++
phytools-0.2-90/phytools/R/plotTree.R | 6
phytools-0.2-90/phytools/R/read.newick.R | 184 +++++++-----
phytools-0.2-90/phytools/R/utilities.R | 71 ++++
phytools-0.2-90/phytools/man/add.simmap.legend.Rd |only
phytools-0.2-90/phytools/man/collapse.to.star.Rd |only
phytools-0.2-90/phytools/man/findMRCA.Rd | 15 -
phytools-0.2-90/phytools/man/phylomorphospace.Rd | 2
phytools-0.2-90/phytools/man/plotSimmap.Rd | 3
phytools-0.2-90/phytools/man/read.newick.Rd | 8
19 files changed, 414 insertions(+), 352 deletions(-)