Thu, 08 Aug 2013

Package scoring updated to version 0.2 with previous version 0.1 dated 2013-07-02

Title: Proper scoring rules
Description: Evaluating probabilistic forecasts via proper scoring rules. scoring implements the beta, power, and pseudospherical families of proper scoring rules. Included among these families are popular rules like the Brier (quadratic) score, logarithmic score, and spherical score. Also includes functionality for plotting scores that one would obtain under specific scoring rules. Functionality is currently limited to forecasts associated with two-alternative events.
Author: Ed Merkle
Maintainer: Ed Merkle

Diff between scoring versions 0.1 dated 2013-07-02 and 0.2 dated 2013-08-08

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 7 files changed, 16 insertions(+), 24 deletions(-)

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Package inline updated to version 0.3.13 with previous version 0.3.12 dated 2013-06-12

Title: Inline C, C++, Fortran function calls from R
Description: Functionality to dynamically define R functions and S4 methods with in-lined C, C++ or Fortran code supporting .C and .Call calling conventions.
Author: Oleg Sklyar, Duncan Murdoch, Mike Smith, Dirk Eddelbuettel, Romain Francois
Maintainer: Dirk Eddelbuettel

Diff between inline versions 0.3.12 dated 2013-06-12 and 0.3.13 dated 2013-08-08

 DESCRIPTION      |   16 +++++++---------
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 5 files changed, 35 insertions(+), 26 deletions(-)

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Package DTR updated to version 1.2 with previous version 1.1-1 dated 2013-06-12

Title: Estimation and comparison of dynamic treatment regimes
Description: Estimation and comparison of survival distributions of dynamic treatment regimes (DTRs) from sequentially randomized clinical trials
Author: Xinyu Tang and Maria Melguizo
Maintainer: Xinyu Tang

Diff between DTR versions 1.1-1 dated 2013-06-12 and 1.2 dated 2013-08-08

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New package codep with initial version 0.2-1
Package: codep
Type: Package
Title: Multiscale Codependence Analysis
Version: 0.2-1
Date: 2013-08-06
Author: Guillaume Guenard and Pierre Legendre, with contributions from Bertrand Pages
Maintainer: Guillaume Guenard
Description: Computation of Multiscale Codependence Analysis and spatial eigenvector maps, as an additional feature.
Depends: R (>= 3.0.0), stats
Suggests: vegan
License: GPL-2
LazyLoad: yes
Revision: 001
URL: http://www.r-project.org
Packaged: 2013-08-08 18:23:29 UTC; guenardg
Repository: CRAN
Date/Publication: 2013-08-09 00:25:35
NeedsCompilation: yes

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Package spt updated to version 1.13-8-8 with previous version 1.11-12-7 dated 2011-12-07

Title: Sierpinski Pedal Triangle
Description: This package collects algorithms related to Sierpinski pedal triangle (SPT).
Author: Bin Wang .
Maintainer: Bin Wang

Diff between spt versions 1.11-12-7 dated 2011-12-07 and 1.13-8-8 dated 2013-08-08

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 4 files changed, 9 insertions(+), 14 deletions(-)

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Package miRada updated to version 1.13.8-8 with previous version 0.1.11-13 dated 2012-11-13

Title: MicroRNA Microarray Data Analysis
Description: This package collects algorithms/functions developed for microRNA profiling data analyses. Analytical platforms include traditional hybridization microarray, CGH, beads-based microarray, and qRT-PCR array.
Author: Bin Wang .
Maintainer: Bin Wang

Diff between miRada versions 0.1.11-13 dated 2012-11-13 and 1.13.8-8 dated 2013-08-08

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 3 files changed, 6 insertions(+), 6 deletions(-)

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New package GGIR with initial version 0.6-17
Package: GGIR
Type: Package
Title: GGIR
Version: 0.6-17
Date: 2013-08-08
Author: Vincent T van Hees
Maintainer: Vincent T van Hees
Description: GGIR is a tool to process multi-day raw acceleration data
License: LGPL (>= 2.0, < 3)
Suggests: MASS, signal, seewave, zoo, mmap
Depends: stats, utils, GENEAread, matlab, bitops
Packaged: 2013-08-08 16:22:41 UTC; nvhv
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-08-08 19:46:43

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Package gb updated to version 1.1.8-8 with previous version 1.0.11-24 dated 2011-11-28

Title: Generalize Lambda Distribution and Generalized Bootstrapping
Description: This package collects algorithms and functions for fitting data to a generalized lambda distribution via moment matching methods, and generalized bootstrapping.
Author: Bin Wang .
Maintainer: Bin Wang

Diff between gb versions 1.0.11-24 dated 2011-11-28 and 1.1.8-8 dated 2013-08-08

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Package DMwR updated to version 0.4.1 with previous version 0.4.0 dated 2013-06-28

Title: Functions and data for "Data Mining with R"
Description: This package includes functions and data accompanying the book "Data Mining with R, learning with case studies" by Luis Torgo, CRC Press 2010.
Author: Luis Torgo
Maintainer: Luis Torgo

Diff between DMwR versions 0.4.0 dated 2013-06-28 and 0.4.1 dated 2013-08-08

 CHANGES                       |    8 ++++-
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 man/tradingEvaluation.Rd      |    4 ++
 18 files changed, 87 insertions(+), 110 deletions(-)

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Package bda updated to version 2.2.8-8 with previous version 2.1.4-19 dated 2013-04-20

Title: Density Estimation for Binned/Weighted Data
Description: This package collects algorithms/functions developed for density estimation based on weighted or pre-binned data.
Author: Bin Wang .
Maintainer: Bin Wang

Diff between bda versions 2.1.4-19 dated 2013-04-20 and 2.2.8-8 dated 2013-08-08

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 35 files changed, 127 insertions(+), 140 deletions(-)

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Package WriteXLS updated to version 3.2.1 with previous version 3.2.0 dated 2013-07-28

Title: Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX) files
Description: Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX) files from one or more data frames. Each data frame will be written to a separate named worksheet in the Excel spreadsheet. The worksheet name will be the name of the data frame it contains or can be specified by the user.
Author: Marc Schwartz and various authors for Perl modules listed in each .pm file.
Maintainer: Marc Schwartz

Diff between WriteXLS versions 3.2.0 dated 2013-07-28 and 3.2.1 dated 2013-08-08

 DESCRIPTION            |    8 ++++----
 MD5                    |   12 ++++++------
 R/WriteXLS.R           |   17 ++++++++++++++++-
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 inst/Perl/WriteXLSX.pl |    2 +-
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 7 files changed, 45 insertions(+), 22 deletions(-)

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Package refGenome updated to version 1.1.2 with previous version 1.1.0 dated 2013-08-07

Title: Managing data from Ensembl and UCSC genome browsers.
Description: Functionality for import and managing of downloaded genome annotation Data from Ensembl genome browser (European Bioinformatics Institute) and from UCSC genome browser (University of California, Santa Cruz).
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers

Diff between refGenome versions 1.1.0 dated 2013-08-07 and 1.1.2 dated 2013-08-08

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New package stylo with initial version 0.5.1
Package: stylo
Type: Package
Title: functions for a variety of stylometric analyses
Version: 0.5.1
Date: 2013-08-07
Author: Maciej Eder, Jan Rybicki, Mike Kestemont
Maintainer: Maciej Eder
URL: https://sites.google.com/site/computationalstylistics/
Imports: tcltk, tcltk2, ape, pamr, e1071, class, lattice
Description: A number of functions, supplemented by GUI, to perform various analyses in the field of computational stylistics, authorship attribution, etc.
License: GPL (>= 3)
Packaged: 2013-08-08 13:21:12 UTC; m
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-08-08 17:46:21

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Package grofit updated to version 1.1.1 with previous version 1.1 dated 2012-08-24

Title: The package was developed to fit fit many growth curves obtained under different conditions.
Description: The package was developed to fit fit many growth curves obtained under different conditions in order to derive a conclusive dose-response curve, for instance for a compound that potentially affects growth. grofit fits data to different parametric models (function gcFitModel) and in addition provides a model free spline fit (function gcFitSpline) to circumvent systematic errors that might occur within application of parametric methods.
Author: Matthias Kahm, Maik Kschischo
Maintainer: ORPHANED

Diff between grofit versions 1.1 dated 2012-08-24 and 1.1.1 dated 2013-08-08

 DESCRIPTION       |   13 +++++++++----
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 4 files changed, 14 insertions(+), 9 deletions(-)

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Package gRim updated to version 0.1-17 with previous version 0.1-16 dated 2013-05-30

Title: Graphical Interaction Models
Description: gRaphical Interaction Models: Models for for contingency tables (i.e. log-linear models) Graphical Gaussian models for multivariate normal data (i.e. covariance selection models) Mixed interaction models
Author: Søren Højsgaard
Maintainer: Søren Højsgaard

Diff between gRim versions 0.1-16 dated 2013-05-30 and 0.1-17 dated 2013-08-08

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 8 files changed, 31 insertions(+), 19 deletions(-)

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Package gRain updated to version 1.2-1 with previous version 1.2-0 dated 2013-07-14

Title: Graphical Independence Networks
Description: A package for probability propagation in graphical independence networks, also known as probabilistic expert systems or Bayesian networks.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard

Diff between gRain versions 1.2-0 dated 2013-07-14 and 1.2-1 dated 2013-08-08

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Package driftsel updated to version 2.0.1 with previous version 1.0 dated 2013-04-24

Title: Distinguishing drift and natural selection as causes of phenotypic differentiation
Description: Neutrality test for quantitative traits
Author: Markku Karhunen & Otso Ovaskainen
Maintainer: Markku Karhunen

Diff between driftsel versions 1.0 dated 2013-04-24 and 2.0.1 dated 2013-08-08

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Package SPMS updated to version 2.0 with previous version 1.0 dated 2013-05-29

Title: Sub-Pathway Mining Software
Description: Use new methods to mine sub-pathway,but user need to prepare for xml format data of KEGG PATHWAY and store them in "xml" folder under "paths"(paths library is the default directory which is set by user) library,prepare KEGG pathway map data and store them in "png" folder under the "paths"(paths library is the default directory which is set by user) library in advance.
Author: Xiaomeng Ni
Maintainer: Xiaomeng Ni

Diff between SPMS versions 1.0 dated 2013-05-29 and 2.0 dated 2013-08-08

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Package moult updated to version 1.3 with previous version 1.2 dated 2013-01-16

Title: Models for Analysing Moult in Birds
Description: Functions to estimate start and duration of moult from moult data (of types 1 to 5), based on models developed in Underhill and Zucchini (1988, 1990). Allows modelling parameters as functions of covariates.
Author: Birgit Erni . Based on models developed by Underhill and Zucchini (1988, 1990).
Maintainer: Birgit Erni

Diff between moult versions 1.2 dated 2013-01-16 and 1.3 dated 2013-08-08

 DESCRIPTION |   23 ++++++++++++-----------
 MD5         |    7 ++++---
 NEWS        |    7 +++++++
 R/moult.R   |   35 +++++++++++++++++------------------
 inst/doc    |only
 5 files changed, 40 insertions(+), 32 deletions(-)

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New package Rpoppler with initial version 0.0-0
Package: Rpoppler
Version: 0.0-0
Title: PDF tools based on Poppler
Description: PDF tools based on the Poppler library
Author: Kurt Hornik
Maintainer: Kurt Hornik
License: GPL-2
SystemRequirements: Poppler Glib interface headers and libraries () [Debian/Ubuntu: libpoppler-glib-dev, Fedora: poppler-glib-devel]
OS_type: unix
Packaged: 2013-08-08 08:01:17 UTC; hornik
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-08-08 10:05:59

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Package wq updated to version 0.3-11 with previous version 0.3-10 dated 2013-05-26

Title: Exploring water quality monitoring data
Description: Functions to assist in the processing and exploration of data from environmental monitoring programs. The name "wq" stands for "water quality" and reflects the original focus on time series data for physical and chemical properties of water, as well as the plankton. The package is intended for programs that sample approximately monthly at discrete stations, a feature of many legacy data sets. Most of the functions should be useful for analysis of similar-frequency time series regardless of the subject matter.
Author: Alan D. Jassby and James E. Cloern
Maintainer: Alan Jassby

Diff between wq versions 0.3-10 dated 2013-05-26 and 0.3-11 dated 2013-08-08

 wq-0.3-10/wq/ChangeLog                |only
 wq-0.3-11/wq/DESCRIPTION              |   28 +++-----
 wq-0.3-11/wq/MD5                      |   51 +++++++--------
 wq-0.3-11/wq/NAMESPACE                |    4 -
 wq-0.3-11/wq/NEWS                     |only
 wq-0.3-11/wq/R/WqData-class.R         |   29 ++++++++
 wq-0.3-11/wq/R/eofNum.R               |    2 
 wq-0.3-11/wq/R/eofPlot.R              |    6 -
 wq-0.3-11/wq/R/mannKen.R              |    9 +-
 wq-0.3-11/wq/R/phenoAmp.R             |    6 -
 wq-0.3-11/wq/R/phenoPhase.R           |    4 -
 wq-0.3-11/wq/R/plotSeason.R           |   12 ++-
 wq-0.3-11/wq/R/plotTs.R               |    6 -
 wq-0.3-11/wq/R/plotTsAnom.R           |    7 +-
 wq-0.3-11/wq/R/plotTsTile.R           |   60 ++++++++++++------
 wq-0.3-11/wq/R/seaRoll.R              |    6 +
 wq-0.3-11/wq/R/seasonTrend.R          |    9 +-
 wq-0.3-11/wq/R/tsMake.R               |    8 +-
 wq-0.3-11/wq/R/wqData.R               |   19 +++--
 wq-0.3-11/wq/README                   |only
 wq-0.3-11/wq/inst/CITATION            |   40 +++++++-----
 wq-0.3-11/wq/inst/doc/wq-package.R    |  112 +++++++++++++++++-----------------
 wq-0.3-11/wq/inst/doc/wq-package.Rnw  |    1 
 wq-0.3-11/wq/man/WqData-class.Rd      |   64 +++++++------------
 wq-0.3-11/wq/man/plotTsTile.Rd        |   17 +++--
 wq-0.3-11/wq/man/wq-package.Rd        |   65 ++++++++++++++++++-
 wq-0.3-11/wq/man/wqData.Rd            |    9 +-
 wq-0.3-11/wq/vignettes/wq-package.Rnw |    1 
 28 files changed, 349 insertions(+), 226 deletions(-)

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Package maps updated to version 2.3-3 with previous version 2.3-2 dated 2013-03-13

Title: Draw Geographical Maps
Description: Display of maps. Projection code and larger maps are in separate packages (mapproj and mapdata).
Author: Original S code by Richard A. Becker and Allan R. Wilks. R version by Ray Brownrigg . Enhancements by Thomas P Minka
Maintainer: Ray Brownrigg

Diff between maps versions 2.3-2 dated 2013-03-13 and 2.3-3 dated 2013-08-08

 DESCRIPTION           |   14 +++++++-------
 MD5                   |    8 ++++----
 data/county.fips.rda  |binary
 data/world.cities.rda |binary
 man/map.Rd            |    9 +++++----
 5 files changed, 16 insertions(+), 15 deletions(-)

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New package HHG with initial version 1.0
Package: HHG
Type: Package
Title: Heller-Heller-Gorfine Tests of Independence
Version: 1.0
Date: 2013-06-15
Author: Shachar Kaufman, based in part on an earlier implementation by Ruth Heller and Yair Heller.
Maintainer: Shachar Kaufman
Suggests: MASS
Description: Heller-Heller-Gorfine (HHG) tests are a set of statistical tests of independence between two random vectors of arbitrary dimensions. For the case of testing independence between random variables (rather than vectors), the package also offers implementations of the DDP and ADP tests which are consistent against all continuous alternatives but are distribution-free, and thus much faster to apply.
License: GPL-2
Packaged: 2013-08-08 06:44:42 UTC; Shachar
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-08-08 08:57:08

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